Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025444.01.T01 | KEH19097.1 | 98.507 | 201 | 3 | 0 | 1 | 201 | 1 | 201 | 1.02E-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025444.01.T01 | Q7ZVZ7 | 42.714 | 199 | 107 | 5 | 6 | 199 | 27 | 223 | 5.88E-46 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025444.01.T01 | G7KCB2 | 98.507 | 201 | 3 | 0 | 1 | 201 | 1 | 201 | 4.02e-141 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048652.01 | MsG0580025444.01 | 0.810365 | 1.194973e-50 | 7.189309e-48 |
| MsG0080048694.01 | MsG0580025444.01 | -0.827340 | 1.651157e-54 | 1.589712e-51 |
| MsG0080048695.01 | MsG0580025444.01 | -0.826451 | 2.693111e-54 | 2.526622e-51 |
| MsG0080048948.01 | MsG0580025444.01 | -0.844046 | 9.634827e-59 | 1.536669e-55 |
| MsG0080049038.01 | MsG0580025444.01 | -0.813266 | 2.792340e-51 | 1.814930e-48 |
| MsG0080049076.01 | MsG0580025444.01 | -0.823941 | 1.055855e-53 | 9.221895e-51 |
| MsG0180000076.01 | MsG0580025444.01 | 0.867005 | 1.881837e-65 | 6.469600e-62 |
| MsG0180000659.01 | MsG0580025444.01 | 0.805316 | 1.416026e-49 | 7.468040e-47 |
| MsG0180001925.01 | MsG0580025444.01 | -0.858689 | 6.931211e-63 | 1.784021e-59 |
| MsG0180004124.01 | MsG0580025444.01 | -0.818837 | 1.590928e-52 | 1.204141e-49 |
| MsG0180004125.01 | MsG0580025444.01 | -0.817133 | 3.862735e-52 | 2.789600e-49 |
| MsG0180004559.01 | MsG0580025444.01 | 0.854984 | 8.549722e-62 | 1.944328e-58 |
| MsG0180006063.01 | MsG0580025444.01 | -0.831290 | 1.815132e-55 | 1.960981e-52 |
| MsG0280010944.01 | MsG0580025444.01 | 0.832999 | 6.860912e-56 | 7.798684e-53 |
| MsG0380012191.01 | MsG0580025444.01 | 0.805356 | 1.388995e-49 | 7.333054e-47 |
| MsG0380013921.01 | MsG0580025444.01 | -0.810812 | 9.567528e-51 | 5.825097e-48 |
| MsG0380013928.01 | MsG0580025444.01 | -0.822556 | 2.223285e-53 | 1.867339e-50 |
| MsG0380013943.01 | MsG0580025444.01 | -0.808137 | 3.589710e-50 | 2.036363e-47 |
| MsG0380013945.01 | MsG0580025444.01 | -0.803663 | 3.130146e-49 | 1.582067e-46 |
| MsG0380013953.01 | MsG0580025444.01 | -0.810633 | 1.046117e-50 | 6.338718e-48 |
| MsG0380013975.01 | MsG0580025444.01 | -0.801944 | 7.091069e-49 | 3.429951e-46 |
| MsG0380013997.01 | MsG0580025444.01 | -0.807947 | 3.940664e-50 | 2.224184e-47 |
| MsG0380014006.01 | MsG0580025444.01 | -0.802961 | 4.374898e-49 | 2.171774e-46 |
| MsG0380014016.01 | MsG0580025444.01 | -0.806490 | 8.021996e-50 | 4.359894e-47 |
| MsG0380014020.01 | MsG0580025444.01 | -0.807408 | 5.129718e-50 | 2.855036e-47 |
| MsG0380014029.01 | MsG0580025444.01 | -0.820690 | 6.003354e-53 | 4.783227e-50 |
| MsG0380014032.01 | MsG0580025444.01 | -0.806586 | 7.656532e-50 | 4.171385e-47 |
| MsG0380014735.01 | MsG0580025444.01 | -0.801356 | 9.359237e-49 | 4.460459e-46 |
| MsG0380014754.01 | MsG0580025444.01 | 0.803840 | 2.876468e-49 | 1.460558e-46 |
| MsG0480019588.01 | MsG0580025444.01 | 0.858585 | 7.449047e-63 | 1.910399e-59 |
| MsG0480020537.01 | MsG0580025444.01 | 0.839861 | 1.230043e-57 | 1.720880e-54 |
| MsG0480023067.01 | MsG0580025444.01 | 0.801191 | 1.011634e-48 | 4.801202e-46 |
| MsG0480023195.01 | MsG0580025444.01 | 0.811020 | 8.626985e-51 | 5.282022e-48 |
| MsG0480023322.01 | MsG0580025444.01 | 0.822319 | 2.524347e-53 | 2.105765e-50 |
| MsG0480023324.01 | MsG0580025444.01 | 0.836134 | 1.117843e-56 | 1.395967e-53 |
| MsG0480023364.01 | MsG0580025444.01 | 0.817188 | 3.753205e-52 | 2.714549e-49 |
| MsG0480023698.01 | MsG0580025444.01 | 0.828383 | 9.268525e-55 | 9.198189e-52 |
| MsG0480023944.01 | MsG0580025444.01 | 0.812282 | 4.585007e-51 | 2.903183e-48 |
| MsG0580024119.01 | MsG0580025444.01 | 0.819455 | 1.151078e-52 | 8.862395e-50 |
| MsG0580024144.01 | MsG0580025444.01 | -0.846196 | 2.527553e-59 | 4.316171e-56 |
| MsG0580025443.01 | MsG0580025444.01 | 0.939018 | 2.570297e-99 | 2.577225e-94 |
| MsG0580025444.01 | MsG0580025464.01 | 0.828969 | 6.688335e-55 | 6.751051e-52 |
| MsG0580025444.01 | MsG0580025486.01 | -0.816269 | 6.033278e-52 | 4.255519e-49 |
| MsG0580025444.01 | MsG0580025620.01 | 0.809547 | 1.792954e-50 | 1.055761e-47 |
| MsG0580025444.01 | MsG0580027677.01 | -0.801914 | 7.189175e-49 | 3.474967e-46 |
| MsG0580025444.01 | MsG0580028302.01 | 0.819089 | 1.394825e-52 | 1.063009e-49 |
| MsG0580025444.01 | MsG0580029623.01 | 0.844393 | 7.773175e-59 | 1.253090e-55 |
| MsG0580025444.01 | MsG0580030179.01 | 0.827985 | 1.155781e-54 | 1.133810e-51 |
| MsG0580025444.01 | MsG0680030658.01 | -0.807175 | 5.745787e-50 | 3.178536e-47 |
| MsG0580025444.01 | MsG0680031841.01 | 0.800143 | 1.654716e-48 | 7.647412e-46 |
| MsG0580025444.01 | MsG0680035870.01 | -0.809541 | 1.798561e-50 | 1.058882e-47 |
| MsG0580025444.01 | MsG0780038047.01 | -0.803791 | 2.945013e-49 | 1.493454e-46 |
| MsG0580025444.01 | MsG0780038810.01 | 0.849248 | 3.651627e-60 | 6.881450e-57 |
| MsG0580025444.01 | MsG0780039916.01 | 0.804310 | 2.297478e-49 | 1.180672e-46 |
| MsG0580025444.01 | MsG0780040266.01 | 0.828895 | 6.970320e-55 | 7.020399e-52 |
| MsG0580025444.01 | MsG0780041531.01 | -0.810256 | 1.261572e-50 | 7.568284e-48 |
| MsG0580025444.01 | MsG0780041705.01 | 0.806212 | 9.179785e-50 | 4.954120e-47 |
| MsG0580025444.01 | MsG0880043261.01 | 0.849487 | 3.133330e-60 | 5.949170e-57 |
| MsG0580025444.01 | MsG0880043431.01 | 0.818566 | 1.833476e-52 | 1.377243e-49 |
| MsG0580025444.01 | MsG0880043983.01 | 0.825480 | 4.582605e-54 | 4.181725e-51 |
| MsG0580025444.01 | MsG0880045413.01 | -0.804402 | 2.197559e-49 | 1.131983e-46 |
| MsG0580025444.01 | MsG0880045584.01 | 0.801422 | 9.072693e-49 | 4.330992e-46 |
| MsG0580025444.01 | MsG0880047465.01 | 0.813268 | 2.790026e-51 | 1.813497e-48 |
| MsG0580025444.01 | MsG0880047466.01 | 0.815088 | 1.105686e-51 | 7.550244e-49 |
| MsG0380015802.01 | MsG0580025444.01 | -0.802028 | 6.812759e-49 | 3.302518e-46 |
| MsG0380015871.01 | MsG0580025444.01 | 0.805277 | 1.442459e-49 | 7.599658e-47 |
| MsG0380016051.01 | MsG0580025444.01 | 0.805467 | 1.316455e-49 | 6.969979e-47 |
| MsG0380016110.01 | MsG0580025444.01 | 0.815947 | 7.119233e-52 | 4.977150e-49 |
| MsG0380016935.01 | MsG0580025444.01 | -0.814805 | 1.277552e-51 | 8.657720e-49 |
| MsG0380017231.01 | MsG0580025444.01 | 0.832990 | 6.893928e-56 | 7.834117e-53 |
| MsG0380017730.01 | MsG0580025444.01 | 0.800608 | 1.330498e-48 | 6.221980e-46 |
| MsG0380017967.01 | MsG0580025444.01 | 0.811237 | 7.742336e-51 | 4.767115e-48 |
| MsG0380017997.01 | MsG0580025444.01 | 0.819278 | 1.262983e-52 | 9.675480e-50 |
| MsG0280006884.01 | MsG0580025444.01 | 0.832743 | 7.943118e-56 | 8.959316e-53 |
| MsG0280007786.01 | MsG0580025444.01 | 0.849270 | 3.600416e-60 | 6.789008e-57 |
| MsG0280008002.01 | MsG0580025444.01 | 0.837272 | 5.732104e-57 | 7.407360e-54 |
| MsG0280008407.01 | MsG0580025444.01 | 0.831072 | 2.053961e-55 | 2.204827e-52 |
| MsG0280008820.01 | MsG0580025444.01 | -0.825875 | 3.692250e-54 | 3.407795e-51 |
| MsG0280009526.01 | MsG0580025444.01 | 0.804004 | 2.659149e-49 | 1.355912e-46 |
| MsG0280009864.01 | MsG0580025444.01 | -0.812214 | 4.744849e-51 | 2.998830e-48 |
| MsG0280010142.01 | MsG0580025444.01 | -0.820743 | 5.838349e-53 | 4.658648e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025444.01.T01 | MTR_8g037335 | 98.507 | 201 | 3 | 0 | 1 | 201 | 1 | 201 | 1.24e-145 | 409 |
| MsG0580025444.01.T01 | MTR_5g029210 | 98.507 | 201 | 3 | 0 | 1 | 201 | 1 | 201 | 1.02e-144 | 409 |
| MsG0580025444.01.T01 | MTR_7g032640 | 60.804 | 199 | 73 | 1 | 1 | 199 | 1 | 194 | 7.69e-84 | 253 |
| MsG0580025444.01.T01 | MTR_3g075410 | 61.307 | 199 | 72 | 2 | 1 | 199 | 1 | 194 | 2.46e-83 | 252 |
| MsG0580025444.01.T01 | MTR_7g017430 | 60.891 | 202 | 68 | 2 | 1 | 199 | 1 | 194 | 1.94e-78 | 240 |
| MsG0580025444.01.T01 | MTR_6g018930 | 57.767 | 206 | 80 | 2 | 1 | 199 | 1 | 206 | 1.96e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025444.01.T01 | AT1G32190 | 78.537 | 205 | 40 | 1 | 1 | 201 | 1 | 205 | 1.19e-108 | 318 |
| MsG0580025444.01.T01 | AT2G24320 | 60.302 | 199 | 73 | 2 | 1 | 199 | 1 | 193 | 1.64e-84 | 253 |
| MsG0580025444.01.T01 | AT4G31020 | 60.000 | 200 | 73 | 2 | 1 | 199 | 1 | 194 | 4.27e-84 | 251 |
| MsG0580025444.01.T01 | AT4G31020 | 60.000 | 200 | 73 | 2 | 1 | 199 | 1 | 194 | 4.27e-84 | 251 |
| MsG0580025444.01.T01 | AT4G24760 | 59.799 | 199 | 75 | 2 | 1 | 199 | 1 | 194 | 3.43e-83 | 251 |
| MsG0580025444.01.T01 | AT3G30380 | 59.024 | 205 | 78 | 2 | 1 | 205 | 1 | 199 | 1.10e-82 | 251 |
| MsG0580025444.01.T01 | AT2G24320 | 60.938 | 192 | 69 | 2 | 8 | 199 | 1 | 186 | 2.80e-82 | 246 |
| MsG0580025444.01.T01 | AT3G30380 | 59.024 | 205 | 78 | 2 | 1 | 205 | 1 | 199 | 2.89e-82 | 250 |
| MsG0580025444.01.T01 | AT3G01690 | 59.512 | 205 | 78 | 2 | 1 | 205 | 1 | 200 | 7.93e-82 | 248 |
| MsG0580025444.01.T01 | AT5G14390 | 61.307 | 199 | 72 | 2 | 1 | 199 | 1 | 194 | 1.81e-81 | 247 |
| MsG0580025444.01.T01 | AT5G38220 | 60.302 | 199 | 72 | 3 | 1 | 199 | 1 | 192 | 4.57e-78 | 234 |
| MsG0580025444.01.T01 | AT5G38220 | 60.302 | 199 | 72 | 3 | 1 | 199 | 1 | 192 | 6.24e-77 | 234 |
| MsG0580025444.01.T01 | AT5G38220 | 60.302 | 199 | 72 | 3 | 1 | 199 | 1 | 192 | 6.24e-77 | 234 |
| MsG0580025444.01.T01 | AT1G66900 | 59.204 | 201 | 74 | 3 | 1 | 199 | 1 | 195 | 1.09e-75 | 229 |
| MsG0580025444.01.T01 | AT1G13610 | 56.500 | 200 | 83 | 3 | 1 | 199 | 1 | 197 | 5.26e-73 | 225 |
| MsG0580025444.01.T01 | AT1G32190 | 88.462 | 78 | 9 | 0 | 119 | 196 | 38 | 115 | 7.85e-43 | 147 |
| MsG0580025444.01.T01 | AT1G13610 | 64.634 | 82 | 29 | 0 | 120 | 201 | 18 | 99 | 1.46e-27 | 105 |
Find 51 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACACAGCGGCATTCTTTC+TGG | 0.128334 | 5:-18697476 | MsG0580025444.01.T01:CDS |
| CATGGCAATGCTGCTGATTT+AGG | 0.205462 | 5:-18699699 | MsG0580025444.01.T01:CDS |
| TTCCTGGCCAACTCCATATT+TGG | 0.237019 | 5:+18697583 | None:intergenic |
| TTTGACATTTATAAGGTAAT+AGG | 0.258623 | 5:-18697416 | MsG0580025444.01.T01:CDS |
| TCCCGCAGGTATGACTATTC+TGG | 0.284559 | 5:-18697866 | MsG0580025444.01.T01:intron |
| GAATGCCTTGAAACCAAATA+TGG | 0.310658 | 5:-18697596 | MsG0580025444.01.T01:CDS |
| TGATCTCTTTGTTCAACTTA+AGG | 0.314107 | 5:-18699667 | MsG0580025444.01.T01:CDS |
| CAGGAAGACGTAATCTTATA+CGG | 0.331817 | 5:-18697566 | MsG0580025444.01.T01:CDS |
| AGCAAAGTTAATCTTGCATA+AGG | 0.341545 | 5:+18699729 | None:intergenic |
| AGGTATGACTATTCTGGATA+TGG | 0.361762 | 5:-18697860 | MsG0580025444.01.T01:CDS |
| CAACTCCATATTTGGTTTCA+AGG | 0.370723 | 5:+18697591 | None:intergenic |
| CAAAGAAAAGCCTACCTTGC+CGG | 0.379208 | 5:+18697829 | None:intergenic |
| CGTATAAGATTACGTCTTCC+TGG | 0.406105 | 5:+18697567 | None:intergenic |
| GCAAAGTTAATCTTGCATAA+GGG | 0.428314 | 5:+18699730 | None:intergenic |
| ATCTTATACGGGCAATCAGT+TGG | 0.448134 | 5:-18697554 | MsG0580025444.01.T01:CDS |
| TTAACTTTGCTTTATTCTCA+TGG | 0.455196 | 5:-18699717 | MsG0580025444.01.T01:CDS |
| AAGTGGACCAACATTGCATT+TGG | 0.456630 | 5:-18697531 | MsG0580025444.01.T01:CDS |
| TCTGGATATGGTGCCTCTAC+CGG | 0.462209 | 5:-18697848 | MsG0580025444.01.T01:CDS |
| TTCTTCAGCTGATACGTTGG+TGG | 0.465989 | 5:+18699882 | None:intergenic |
| TTATCATCAGGATGAGGAAT+CGG | 0.478365 | 5:+18699819 | None:intergenic |
| TCATCCTGATGATAACTCAT+TGG | 0.484592 | 5:-18699811 | MsG0580025444.01.T01:CDS |
| CTTCTTGTTGACACAAAACA+TGG | 0.495893 | 5:-18699783 | MsG0580025444.01.T01:CDS |
| AGCTGATACGTTGGTGGTGA+AGG | 0.499741 | 5:+18699888 | None:intergenic |
| ACATCCAATGAGTTATCATC+AGG | 0.502138 | 5:+18699807 | None:intergenic |
| AAAGCCTACCTTGCCGGTAG+AGG | 0.512003 | 5:+18697835 | None:intergenic |
| TTCTTCTTCAGCTGATACGT+TGG | 0.513005 | 5:+18699879 | None:intergenic |
| CTCTATGTCAGCATATGTGC+TGG | 0.520235 | 5:+18697628 | None:intergenic |
| AACCAAATATGGAGTTGGCC+AGG | 0.523037 | 5:-18697585 | MsG0580025444.01.T01:CDS |
| AATCTCAGAGTTAATCTCAT+GGG | 0.526908 | 5:-18699642 | MsG0580025444.01.T01:CDS |
| TACGGGCAATCAGTTGGAAG+TGG | 0.541674 | 5:-18697548 | MsG0580025444.01.T01:CDS |
| TTAGCTGCCAAATGCAATGT+TGG | 0.556035 | 5:+18697524 | None:intergenic |
| CTTGAAACCAAATATGGAGT+TGG | 0.559208 | 5:-18697590 | MsG0580025444.01.T01:CDS |
| GCATATGTGCTGGATTCACT+AGG | 0.560112 | 5:+18697638 | None:intergenic |
| TGTGTGATGAATGGGTTGCA+TGG | 0.573626 | 5:-18699946 | None:intergenic |
| ATGAGGAATCGGAGAAGCGG+TGG | 0.579853 | 5:+18699830 | None:intergenic |
| AGGAAGACGTAATCTTATAC+GGG | 0.584093 | 5:-18697565 | MsG0580025444.01.T01:CDS |
| CAGCACATATGCTGACATAG+AGG | 0.584108 | 5:-18697627 | MsG0580025444.01.T01:CDS |
| AGAACCACGCCTCTCAGCCT+CGG | 0.605262 | 5:+18697497 | None:intergenic |
| AATGAGTTATCATCAGGATG+AGG | 0.605904 | 5:+18699813 | None:intergenic |
| TAATCTCAGAGTTAATCTCA+TGG | 0.609130 | 5:-18699643 | MsG0580025444.01.T01:CDS |
| ATCTCAGAGTTAATCTCATG+GGG | 0.613897 | 5:-18699641 | MsG0580025444.01.T01:intron |
| GAATGATGACGGCAAACTCA+CGG | 0.619460 | 5:-18699859 | MsG0580025444.01.T01:CDS |
| AGGATGAGGAATCGGAGAAG+CGG | 0.631727 | 5:+18699827 | None:intergenic |
| ATATGGTGCCTCTACCGGCA+AGG | 0.642432 | 5:-18697843 | MsG0580025444.01.T01:intron |
| GTTACCGAGGCTGAGAGGCG+TGG | 0.644100 | 5:-18697501 | MsG0580025444.01.T01:CDS |
| CAGCTGAAGAAGAATGATGA+CGG | 0.645153 | 5:-18699870 | MsG0580025444.01.T01:CDS |
| GCTAAGTTACCGAGGCTGAG+AGG | 0.669433 | 5:-18697506 | MsG0580025444.01.T01:CDS |
| TGATACGTTGGTGGTGAAGG+TGG | 0.669917 | 5:+18699891 | None:intergenic |
| ATTTGGCAGCTAAGTTACCG+AGG | 0.676887 | 5:-18697514 | MsG0580025444.01.T01:CDS |
| AGAGGCGTGGTTCTACACAG+CGG | 0.771216 | 5:-18697488 | MsG0580025444.01.T01:CDS |
| TGATGACGGCAAACTCACGG+TGG | 0.787140 | 5:-18699856 | MsG0580025444.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATACAAAAGCTAAA+TGG | + | Chr5:18699161-18699180 | None:intergenic | 15.0% |
| !! | AATAGTAAATTGAATGTAAA+GGG | + | Chr5:18698972-18698991 | None:intergenic | 15.0% |
| !! | AATTTATACAAAAGCTAAAT+GGG | + | Chr5:18699160-18699179 | None:intergenic | 15.0% |
| !! | TAATAGTAAATTGAATGTAA+AGG | + | Chr5:18698973-18698992 | None:intergenic | 15.0% |
| !! | TTTACATTCAATTTACTATT+AGG | - | Chr5:18698972-18698991 | MsG0580025444.01.T01:intron | 15.0% |
| !!! | ATTTTATAGAATCAATTCAT+TGG | - | Chr5:18699003-18699022 | MsG0580025444.01.T01:intron | 15.0% |
| !!! | ATTTTTTGTTTGTTTGTTTA+GGG | + | Chr5:18698361-18698380 | None:intergenic | 15.0% |
| !!! | TGATTAATTTGAAAAACATA+AGG | + | Chr5:18697709-18697728 | None:intergenic | 15.0% |
| !!! | TTTAATTCTAATGCTTTAAA+AGG | + | Chr5:18698713-18698732 | None:intergenic | 15.0% |
| !! | AAAAACTGGAAAACTTTAAA+CGG | + | Chr5:18698575-18698594 | None:intergenic | 20.0% |
| !! | AAATTGAGAAAGTAAAACAA+AGG | + | Chr5:18698543-18698562 | None:intergenic | 20.0% |
| !! | ATCAAGATAATACAAAACAA+GGG | + | Chr5:18697881-18697900 | None:intergenic | 20.0% |
| !! | ATGAAAAAGTTAAAGTGAAA+AGG | - | Chr5:18698379-18698398 | MsG0580025444.01.T01:intron | 20.0% |
| !! | GAAAATGATAAATGTATGTT+TGG | - | Chr5:18698733-18698752 | MsG0580025444.01.T01:intron | 20.0% |
| !! | GAACTTCAAATCAATAATAA+TGG | + | Chr5:18699138-18699157 | None:intergenic | 20.0% |
| !! | TATTATGTTAATCTATGCAT+TGG | - | Chr5:18697988-18698007 | MsG0580025444.01.T01:intron | 20.0% |
| !! | TTTGACATTTATAAGGTAAT+AGG | - | Chr5:18699893-18699912 | MsG0580025444.01.T01:CDS | 20.0% |
| !!! | AATAGTTTATTTGGTTTTAG+TGG | - | Chr5:18697937-18697956 | MsG0580025444.01.T01:intron | 20.0% |
| !!! | ATAGTTTATTTGGTTTTAGT+GGG | - | Chr5:18697938-18697957 | MsG0580025444.01.T01:intron | 20.0% |
| !!! | CATTTTTTGTTTGTTTGTTT+AGG | + | Chr5:18698362-18698381 | None:intergenic | 20.0% |
| !!! | CTTTAAAAGGAAAATAATGT+TGG | + | Chr5:18698700-18698719 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTGACATTTATA+AGG | - | Chr5:18699886-18699905 | MsG0580025444.01.T01:CDS | 20.0% |
| ! | AAAAAAGCAGCATGTATTTA+TGG | - | Chr5:18698417-18698436 | MsG0580025444.01.T01:intron | 25.0% |
| ! | AAGTTAAAGTGAAAAGGAAA+AGG | - | Chr5:18698385-18698404 | MsG0580025444.01.T01:intron | 25.0% |
| ! | ATGGCAAAGTATATTATTAC+AGG | + | Chr5:18699119-18699138 | None:intergenic | 25.0% |
| ! | CATCAAGATAATACAAAACA+AGG | + | Chr5:18697882-18697901 | None:intergenic | 25.0% |
| ! | GAAAGATTACAACAATTCAA+AGG | + | Chr5:18699083-18699102 | None:intergenic | 25.0% |
| ! | GATGTAAATCAAACCATTTA+TGG | + | Chr5:18699287-18699306 | None:intergenic | 25.0% |
| ! | GGCAACAAAAATAGTTTATT+TGG | - | Chr5:18697928-18697947 | MsG0580025444.01.T01:intron | 25.0% |
| ! | TAAAAAGTGAACATGTACAT+TGG | - | Chr5:18699260-18699279 | MsG0580025444.01.T01:intron | 25.0% |
| ! | TACTCTTTCTCTTTCTTATT+AGG | - | Chr5:18697907-18697926 | MsG0580025444.01.T01:intron | 25.0% |
| ! | TGTTTGGTATAAGGATTAAT+TGG | - | Chr5:18698111-18698130 | MsG0580025444.01.T01:intron | 25.0% |
| !! | ATTGTCATTTCTTTGATGTA+TGG | + | Chr5:18698237-18698256 | None:intergenic | 25.0% |
| !! | TACCTTTGTTTAGATTCTAT+TGG | - | Chr5:18698464-18698483 | MsG0580025444.01.T01:intron | 25.0% |
| !! | TTAACTTTGCTTTATTCTCA+TGG | - | Chr5:18697592-18697611 | MsG0580025444.01.T01:CDS | 25.0% |
| !!! | ATAATTGATTTTGACACGTT+TGG | - | Chr5:18698796-18698815 | MsG0580025444.01.T01:intron | 25.0% |
| !!! | ATTTGCTTTAGAAGTTTCAT+TGG | - | Chr5:18699201-18699220 | MsG0580025444.01.T01:intron | 25.0% |
| AAAGTGAAAAGGAAAAGGAA+AGG | - | Chr5:18698390-18698409 | MsG0580025444.01.T01:intron | 30.0% | |
| AAGTGAAAAGGAAAAGGAAA+GGG | - | Chr5:18698391-18698410 | MsG0580025444.01.T01:intron | 30.0% | |
| AATCTCAGAGTTAATCTCAT+GGG | - | Chr5:18697667-18697686 | MsG0580025444.01.T01:intron | 30.0% | |
| ACTACCAAGAAGAAAAAGTT+AGG | + | Chr5:18698490-18698509 | None:intergenic | 30.0% | |
| AGCAAAGTTAATCTTGCATA+AGG | + | Chr5:18697583-18697602 | None:intergenic | 30.0% | |
| GCAAAGTTAATCTTGCATAA+GGG | + | Chr5:18697582-18697601 | None:intergenic | 30.0% | |
| GGATACATTCATGTAAAAGT+GGG | + | Chr5:18698940-18698959 | None:intergenic | 30.0% | |
| GTAGAAAGTAGATGAAGTTA+AGG | - | Chr5:18698312-18698331 | MsG0580025444.01.T01:intron | 30.0% | |
| TAAGAAAATGCTTAGGTGTA+TGG | + | Chr5:18699053-18699072 | None:intergenic | 30.0% | |
| TAATCTCAGAGTTAATCTCA+TGG | - | Chr5:18697666-18697685 | MsG0580025444.01.T01:intron | 30.0% | |
| TCTAACTTGATGCTAGAATT+TGG | - | Chr5:18698859-18698878 | MsG0580025444.01.T01:intron | 30.0% | |
| TGATCTCTTTGTTCAACTTA+AGG | - | Chr5:18697642-18697661 | MsG0580025444.01.T01:intron | 30.0% | |
| TGGATACATTCATGTAAAAG+TGG | + | Chr5:18698941-18698960 | None:intergenic | 30.0% | |
| TGTAGGATAAGAAAATGCTT+AGG | + | Chr5:18699060-18699079 | None:intergenic | 30.0% | |
| ! | AAGTTAGAGTCAATTTTGGA+AGG | + | Chr5:18698847-18698866 | None:intergenic | 30.0% |
| ! | CATCAAGTTAGAGTCAATTT+TGG | + | Chr5:18698851-18698870 | None:intergenic | 30.0% |
| ! | CTGCATAGTTTTTGCAAAAT+CGG | + | Chr5:18698158-18698177 | None:intergenic | 30.0% |
| ! | GATAAATGTATGTTTGGTTC+CGG | - | Chr5:18698739-18698758 | MsG0580025444.01.T01:intron | 30.0% |
| ! | TGGGTTGAACAATAAATTTG+AGG | + | Chr5:18698921-18698940 | None:intergenic | 30.0% |
| ! | TTACAACAATTCAAAGGTGT+AGG | + | Chr5:18699077-18699096 | None:intergenic | 30.0% |
| !! | GGAAAATAATGTTGGTAGTA+TGG | + | Chr5:18698692-18698711 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTGGTGTGTTTA+TGG | - | Chr5:18698622-18698641 | MsG0580025444.01.T01:intron | 30.0% |
| !!! | AGTTTTTTGGTGTGTTTATG+GGG | - | Chr5:18698624-18698643 | MsG0580025444.01.T01:intron | 30.0% |
| !!! | GAGTTTTTTGGTGTGTTTAT+GGG | - | Chr5:18698623-18698642 | MsG0580025444.01.T01:intron | 30.0% |
| AAAGCTTTCAAAGAACACCA+AGG | + | Chr5:18698657-18698676 | None:intergenic | 35.0% | |
| AAGCTTTCAAAGAACACCAA+GGG | + | Chr5:18698656-18698675 | None:intergenic | 35.0% | |
| AATGAGTTATCATCAGGATG+AGG | + | Chr5:18697499-18697518 | None:intergenic | 35.0% | |
| ACATCCAATGAGTTATCATC+AGG | + | Chr5:18697505-18697524 | None:intergenic | 35.0% | |
| AGGAAGACGTAATCTTATAC+GGG | - | Chr5:18699744-18699763 | MsG0580025444.01.T01:CDS | 35.0% | |
| AGGTATGACTATTCTGGATA+TGG | - | Chr5:18699449-18699468 | MsG0580025444.01.T01:intron | 35.0% | |
| ATCTCAGAGTTAATCTCATG+GGG | - | Chr5:18697668-18697687 | MsG0580025444.01.T01:intron | 35.0% | |
| CAGGAAGACGTAATCTTATA+CGG | - | Chr5:18699743-18699762 | MsG0580025444.01.T01:CDS | 35.0% | |
| CATGTACATTGGTCCATAAA+TGG | - | Chr5:18699271-18699290 | MsG0580025444.01.T01:intron | 35.0% | |
| CTTCTTGTTGACACAAAACA+TGG | - | Chr5:18697526-18697545 | MsG0580025444.01.T01:CDS | 35.0% | |
| CTTGAAACCAAATATGGAGT+TGG | - | Chr5:18699719-18699738 | MsG0580025444.01.T01:CDS | 35.0% | |
| GAATGCCTTGAAACCAAATA+TGG | - | Chr5:18699713-18699732 | MsG0580025444.01.T01:CDS | 35.0% | |
| GAATGTAAAGGGCTTATGTT+TGG | + | Chr5:18698961-18698980 | None:intergenic | 35.0% | |
| GGATTAATTGGTCGAAATCA+CGG | - | Chr5:18698123-18698142 | MsG0580025444.01.T01:intron | 35.0% | |
| GGCCAATAGAATCTAAACAA+AGG | + | Chr5:18698469-18698488 | None:intergenic | 35.0% | |
| TAATACAAAACAAGGGTCAG+TGG | + | Chr5:18697874-18697893 | None:intergenic | 35.0% | |
| TCATCCTGATGATAACTCAT+TGG | - | Chr5:18697498-18697517 | MsG0580025444.01.T01:CDS | 35.0% | |
| TGATGTGCATGTTTGGTATA+AGG | - | Chr5:18698102-18698121 | MsG0580025444.01.T01:intron | 35.0% | |
| TTATCATCAGGATGAGGAAT+CGG | + | Chr5:18697493-18697512 | None:intergenic | 35.0% | |
| ! | CAACTCCATATTTGGTTTCA+AGG | + | Chr5:18699721-18699740 | None:intergenic | 35.0% |
| !! | GTGAGTATGTGTTTTAGATC+TGG | - | Chr5:18698047-18698066 | MsG0580025444.01.T01:intron | 35.0% |
| !! | TTGGCCTAACTTTTTCTTCT+TGG | - | Chr5:18698483-18698502 | MsG0580025444.01.T01:intron | 35.0% |
| !!! | GGACATAGCATAGAGTTTTT+TGG | - | Chr5:18698611-18698630 | MsG0580025444.01.T01:intron | 35.0% |
| AAGTGGACCAACATTGCATT+TGG | - | Chr5:18699778-18699797 | MsG0580025444.01.T01:CDS | 40.0% | |
| ATCCAGAATAGTCATACCTG+CGG | + | Chr5:18699448-18699467 | None:intergenic | 40.0% | |
| ATCCATGTAGGGGTAAAAAC+TGG | + | Chr5:18698589-18698608 | None:intergenic | 40.0% | |
| ATCTTATACGGGCAATCAGT+TGG | - | Chr5:18699755-18699774 | MsG0580025444.01.T01:CDS | 40.0% | |
| CAGCTGAAGAAGAATGATGA+CGG | - | Chr5:18697439-18697458 | MsG0580025444.01.T01:CDS | 40.0% | |
| CGTATAAGATTACGTCTTCC+TGG | + | Chr5:18699745-18699764 | None:intergenic | 40.0% | |
| GTAGATGAAGTTAAGGCTTC+TGG | - | Chr5:18698319-18698338 | MsG0580025444.01.T01:intron | 40.0% | |
| GTGAATGTGATGTGCATGTT+TGG | - | Chr5:18698095-18698114 | MsG0580025444.01.T01:intron | 40.0% | |
| TACCTGCGGGAAGAAAAAAA+AGG | + | Chr5:18699434-18699453 | None:intergenic | 40.0% | |
| TTAATTGGTCGAAATCACGG+TGG | - | Chr5:18698126-18698145 | MsG0580025444.01.T01:intron | 40.0% | |
| TTAGCTGCCAAATGCAATGT+TGG | + | Chr5:18699788-18699807 | None:intergenic | 40.0% | |
| TTCTTCTTCAGCTGATACGT+TGG | + | Chr5:18697433-18697452 | None:intergenic | 40.0% | |
| TTTGATGTATGGTATCACCG+TGG | + | Chr5:18698226-18698245 | None:intergenic | 40.0% | |
| ! | ATTTTGCCTCCTCCAAAAAC+CGG | + | Chr5:18698761-18698780 | None:intergenic | 40.0% |
| ! | CAGCTTTAGTCTAGAAATGC+TGG | + | Chr5:18699390-18699409 | None:intergenic | 40.0% |
| ! | TTCCAGTTTTTACCCCTACA+TGG | - | Chr5:18698584-18698603 | MsG0580025444.01.T01:intron | 40.0% |
| ! | TTTTTACCCCTACATGGATG+TGG | - | Chr5:18698590-18698609 | MsG0580025444.01.T01:intron | 40.0% |
| !! | GTATGTTTGGTTCCGGTTTT+TGG | - | Chr5:18698746-18698765 | MsG0580025444.01.T01:intron | 40.0% |
| !! | TTTTGGTGTGTTTATGGGGA+TGG | - | Chr5:18698628-18698647 | MsG0580025444.01.T01:intron | 40.0% |
| !!! | AACCTTTTTTTTCTTCCCGC+AGG | - | Chr5:18699429-18699448 | MsG0580025444.01.T01:intron | 40.0% |
| AACCAAATATGGAGTTGGCC+AGG | - | Chr5:18699724-18699743 | MsG0580025444.01.T01:CDS | 45.0% | |
| ACCGTGGTTACTCGAAATCA+CGG | + | Chr5:18698210-18698229 | None:intergenic | 45.0% | |
| ACTAAGTTCTGTCGCAACGA+TGG | - | Chr5:18699517-18699536 | MsG0580025444.01.T01:intron | 45.0% | |
| ATTTGGCAGCTAAGTTACCG+AGG | - | Chr5:18699795-18699814 | MsG0580025444.01.T01:CDS | 45.0% | |
| CAAAGAAAAGCCTACCTTGC+CGG | + | Chr5:18699483-18699502 | None:intergenic | 45.0% | |
| CAGCACATATGCTGACATAG+AGG | - | Chr5:18699682-18699701 | MsG0580025444.01.T01:CDS | 45.0% | |
| CTATGTCCACATCCATGTAG+GGG | + | Chr5:18698599-18698618 | None:intergenic | 45.0% | |
| CTCTATGTCAGCATATGTGC+TGG | + | Chr5:18699684-18699703 | None:intergenic | 45.0% | |
| GCATATGTGCTGGATTCACT+AGG | + | Chr5:18699674-18699693 | None:intergenic | 45.0% | |
| GCTATGTCCACATCCATGTA+GGG | + | Chr5:18698600-18698619 | None:intergenic | 45.0% | |
| TCCAGAATAGTCATACCTGC+GGG | + | Chr5:18699447-18699466 | None:intergenic | 45.0% | |
| TGCTATGTCCACATCCATGT+AGG | + | Chr5:18698601-18698620 | None:intergenic | 45.0% | |
| TGGTTACTCGAAATCACGGT+GGG | + | Chr5:18698206-18698225 | None:intergenic | 45.0% | |
| TTCCTGGCCAACTCCATATT+TGG | + | Chr5:18699729-18699748 | None:intergenic | 45.0% | |
| TTCTTCAGCTGATACGTTGG+TGG | + | Chr5:18697430-18697449 | None:intergenic | 45.0% | |
| ! | ACCGTGATTTCGAGTAACCA+CGG | - | Chr5:18698206-18698225 | MsG0580025444.01.T01:intron | 45.0% |
| ! | GGAGGAGGCAAAATTGATTC+TGG | - | Chr5:18698767-18698786 | MsG0580025444.01.T01:intron | 45.0% |
| !! | CATGGCAATGCTGCTGATTT+AGG | - | Chr5:18697610-18697629 | MsG0580025444.01.T01:CDS | 45.0% |
| !! | GAATGATGACGGCAAACTCA+CGG | - | Chr5:18697450-18697469 | MsG0580025444.01.T01:CDS | 45.0% |
| !! | TGTTTGGTTCCGGTTTTTGG+AGG | - | Chr5:18698749-18698768 | MsG0580025444.01.T01:intron | 45.0% |
| AGGATGAGGAATCGGAGAAG+CGG | + | Chr5:18697485-18697504 | None:intergenic | 50.0% | |
| CTACACAGCGGCATTCTTTC+TGG | - | Chr5:18699833-18699852 | MsG0580025444.01.T01:CDS | 50.0% | |
| GTGGTTACTCGAAATCACGG+TGG | + | Chr5:18698207-18698226 | None:intergenic | 50.0% | |
| TACGGGCAATCAGTTGGAAG+TGG | - | Chr5:18699761-18699780 | MsG0580025444.01.T01:CDS | 50.0% | |
| TCCCGCAGGTATGACTATTC+TGG | - | Chr5:18699443-18699462 | MsG0580025444.01.T01:intron | 50.0% | |
| TCTGGATATGGTGCCTCTAC+CGG | - | Chr5:18699461-18699480 | MsG0580025444.01.T01:intron | 50.0% | |
| TGTTTAGGGAAGACACCCTC+TGG | + | Chr5:18698347-18698366 | None:intergenic | 50.0% | |
| TTAAGGCTTCTGGCACCAGA+GGG | - | Chr5:18698329-18698348 | MsG0580025444.01.T01:intron | 50.0% | |
| ! | CGGCAAGGTAGGCTTTTCTT+TGG | - | Chr5:18699481-18699500 | MsG0580025444.01.T01:intron | 50.0% |
| !! | AGCTGATACGTTGGTGGTGA+AGG | + | Chr5:18697424-18697443 | None:intergenic | 50.0% |
| !! | TGATACGTTGGTGGTGAAGG+TGG | + | Chr5:18697421-18697440 | None:intergenic | 50.0% |
| !! | TTGGTTCCGGTTTTTGGAGG+AGG | - | Chr5:18698752-18698771 | MsG0580025444.01.T01:intron | 50.0% |
| AAAGCCTACCTTGCCGGTAG+AGG | + | Chr5:18699477-18699496 | None:intergenic | 55.0% | |
| ATATGGTGCCTCTACCGGCA+AGG | - | Chr5:18699466-18699485 | MsG0580025444.01.T01:intron | 55.0% | |
| ATGAGGAATCGGAGAAGCGG+TGG | + | Chr5:18697482-18697501 | None:intergenic | 55.0% | |
| GCTAAGTTACCGAGGCTGAG+AGG | - | Chr5:18699803-18699822 | MsG0580025444.01.T01:CDS | 55.0% | |
| GTTAAGGCTTCTGGCACCAG+AGG | - | Chr5:18698328-18698347 | MsG0580025444.01.T01:intron | 55.0% | |
| GTTTATGGGGATGGAGCCCT+TGG | - | Chr5:18698637-18698656 | MsG0580025444.01.T01:intron | 55.0% | |
| ! | AGAGGCGTGGTTCTACACAG+CGG | - | Chr5:18699821-18699840 | MsG0580025444.01.T01:CDS | 55.0% |
| !! | TGATGACGGCAAACTCACGG+TGG | - | Chr5:18697453-18697472 | MsG0580025444.01.T01:CDS | 55.0% |
| AGAACCACGCCTCTCAGCCT+CGG | + | Chr5:18699815-18699834 | None:intergenic | 60.0% | |
| GGTGCCTCTACCGGCAAGGT+AGG | - | Chr5:18699470-18699489 | MsG0580025444.01.T01:intron | 65.0% | |
| GTTACCGAGGCTGAGAGGCG+TGG | - | Chr5:18699808-18699827 | MsG0580025444.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 18697373 | 18699958 | 18697373 | ID=MsG0580025444.01;Name=MsG0580025444.01 |
| Chr5 | mRNA | 18697373 | 18699958 | 18697373 | ID=MsG0580025444.01.T01;Parent=MsG0580025444.01;Name=MsG0580025444.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|3|0|213 |
| Chr5 | exon | 18699642 | 18699958 | 18699642 | ID=MsG0580025444.01.T01:exon:28613;Parent=MsG0580025444.01.T01 |
| Chr5 | exon | 18697844 | 18697880 | 18697844 | ID=MsG0580025444.01.T01:exon:28612;Parent=MsG0580025444.01.T01 |
| Chr5 | exon | 18697373 | 18697660 | 18697373 | ID=MsG0580025444.01.T01:exon:28611;Parent=MsG0580025444.01.T01 |
| Chr5 | CDS | 18699642 | 18699958 | 18699642 | ID=MsG0580025444.01.T01:cds;Parent=MsG0580025444.01.T01 |
| Chr5 | CDS | 18697844 | 18697880 | 18697844 | ID=MsG0580025444.01.T01:cds;Parent=MsG0580025444.01.T01 |
| Chr5 | CDS | 18697373 | 18697660 | 18697373 | ID=MsG0580025444.01.T01:cds;Parent=MsG0580025444.01.T01 |
| Gene Sequence |
| Protein sequence |
