AlfalfaGEDB | MsG0180000794.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000794.01

KEGG: -
GO: GO:0004252 GO:0016021
PFAM: PF01694

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000794.01.T01	XP_003588536.2	96.324	136	5	0	6	141	150	285	1.43E-84	259

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000794.01.T01	Q84MB5	80.147	136	27	0	6	141	139	274	2.43E-63	197

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000794.01.T01	G7I4B9	96.324	136	5	0	6	141	150	285	6.81e-85	259

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000794.01	MsG0180005303.01	-0.810499	1.118253e-50	6.751511e-48
MsG0180000794.01	MsG0180006096.01	0.800400	1.466970e-48	6.824141e-46
MsG0180000794.01	MsG0280007547.01	0.803284	3.751728e-49	1.877814e-46
MsG0180000794.01	MsG0280007903.01	0.814257	1.689653e-51	1.128183e-48
MsG0180000794.01	MsG0280011376.01	0.804120	2.516059e-49	1.286748e-46
MsG0180000794.01	MsG0380015166.01	0.813501	2.478910e-51	1.621681e-48
MsG0180000794.01	MsG0380015533.01	0.800495	1.403466e-48	6.544312e-46
MsG0180000794.01	MsG0380016740.01	0.835511	1.608064e-56	1.970693e-53
MsG0180000794.01	MsG0380017085.01	0.812880	3.393706e-51	2.182993e-48
MsG0180000794.01	MsG0380017126.01	0.804490	2.106642e-49	1.087615e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000794.01.T01	MTR_1g008300	96.324	136	5	0	6	141	150	285	1.73e-88	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000794.01.T01	AT5G25640	59.712	139	47	1	6	135	146	284	2.20e-38	131

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Find 36 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGTTTGCTCCAACAC+CGG	0.484733	1:+11263188	None:intergenic
AACCATATTGCACACCTTTC+TGG	0.256823	1:-11262216	MsG0180000794.01.T01:CDS
AAGCTTGTTGAAGAAGAGGG+AGG	0.592709	1:-11263243	MsG0180000794.01.T01:CDS
ACTGTTTCAGTTGGAGCTTC+TGG	0.317045	1:-11263141	MsG0180000794.01.T01:CDS
AGGAAAGCTTGTTGAAGAAG+AGG	0.467402	1:-11263247	MsG0180000794.01.T01:CDS
ATCCTTGAGGTGCTTATATT+GGG	0.342592	1:-11262966	MsG0180000794.01.T01:CDS
CAAGCTTCAACATCTTTACC+AGG	0.545205	1:-11262273	MsG0180000794.01.T01:CDS
CAATGCGTAGCCTCCACGAA+AGG	0.605361	1:+11262248	None:intergenic
CAATTTCATGTACCTTTACA+AGG	0.431794	1:+11263088	None:intergenic
CACCAACAAGAGCACCAGAA+AGG	0.589348	1:+11262202	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATATTGCAAGCCATTTG+CGG	+	Chr1:11262963-11262982	None:intergenic	30.0%
ACATATTTGACACATCTGAA+GGG	+	Chr1:11262876-11262895	None:intergenic	30.0%
CAATTTCATGTACCTTTACA+AGG	+	Chr1:11262343-11262362	None:intergenic	30.0%
GAACTTGATTTAGATGTCAT+GGG	-	Chr1:11262428-11262447	MsG0180000794.01.T01:intron	30.0%
TACATATTTGACACATCTGA+AGG	+	Chr1:11262877-11262896	None:intergenic	30.0%
TGAACTTGATTTAGATGTCA+TGG	-	Chr1:11262427-11262446	MsG0180000794.01.T01:intron	30.0%
AAGAACTTGGAGAAACAAAC+TGG	+	Chr1:11262395-11262414	None:intergenic	35.0%
AGCACACTCATGAAATTTAC+AGG	+	Chr1:11262658-11262677	None:intergenic	35.0%
GGGTTTATACTTGAACAACT+AGG	-	Chr1:11263068-11263087	MsG0180000794.01.T01:intron	35.0%
TGATTTAGATGTCATGGGAT+TGG	-	Chr1:11262433-11262452	MsG0180000794.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	11262149	11263301	11262149	ID=MsG0180000794.01;Name=MsG0180000794.01
Chr1	mRNA	11262149	11263301	11262149	ID=MsG0180000794.01.T01;Parent=MsG0180000794.01;Name=MsG0180000794.01.T01;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|1\|1\|3\|0\|141
Chr1	exon	11263101	11263301	11263101	ID=MsG0180000794.01.T01:exon:865;Parent=MsG0180000794.01.T01
Chr1	exon	11262947	11263009	11262947	ID=MsG0180000794.01.T01:exon:866;Parent=MsG0180000794.01.T01
Chr1	exon	11262149	11262310	11262149	ID=MsG0180000794.01.T01:exon:867;Parent=MsG0180000794.01.T01
Chr1	CDS	11263101	11263301	11263101	ID=MsG0180000794.01.T01:cds;Parent=MsG0180000794.01.T01
Chr1	CDS	11262947	11263009	11262947	ID=MsG0180000794.01.T01:cds;Parent=MsG0180000794.01.T01
Chr1	CDS	11262149	11262310	11262149	ID=MsG0180000794.01.T01:cds;Parent=MsG0180000794.01.T01

Gene Sequence

>MsG0180000794.01.T01

ATGAACATTTGTTATTTCGTTGCTTTCACAACAGGAAAGCTTGTTGAAGAAGAGGGAGGAAGTTTTGCTTTGTGGCTTTCTTACATTCTTACCGGTGTTGGAGCAAACCTTGTTTCCTGGCTGATTTTACCAAGAAACACTGTTTCAGTTGGAGCTTCTGGTGCTGTTTTTGGGTTATTTACTATCAGCGTCCTTGTAAAGATGTCATGGGATTGGAGGAAGATCCTTGAGGTGCTTATATTGGGTCAGTTTGTTGTAGAGAAGGTCATGGAAGCAGCTCAAGCTTCAACATCTTTACCAGGAACCTTTCGTGGAGGCTACGCATTGCAAAATGTCAACCATATTGCACACCTTTCTGGTGCTCTTGTTGGTGTGCTCTTGGTTTGGCTTCTTAGCAAAGTTCCTTCTGATTCTTCAGACCGATAA

Protein sequence

>MsG0180000794.01.T01

MNICYFVAFTTGKLVEEEGGSFALWLSYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASTSLPGTFRGGYALQNVNHIAHLSGALVGVLLVWLLSKVPSDSSDR*