AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020788.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020788.01.T01 MTR_4g058930 85.097 463 8 3 1 402 1 463 0.0 790
MsG0480020788.01.T01 MTR_4g058930 87.143 140 18 0 390 529 533 672 1.29e-72 244
MsG0480020788.01.T01 MTR_4g058930 85.466 461 6 3 1 400 1 461 0.0 789
MsG0480020788.01.T01 MTR_4g058930 88.679 159 18 0 390 548 533 691 2.76e-87 284
MsG0480020788.01.T01 MTR_2g094570 65.678 472 86 13 1 406 57 518 0.0 583
MsG0480020788.01.T01 MTR_2g094570 65.000 160 39 3 406 548 589 748 1.48e-55 199
MsG0480020788.01.T01 MTR_2g094570 65.678 472 86 13 1 406 1 462 0.0 582
MsG0480020788.01.T01 MTR_2g094570 65.000 160 39 3 406 548 533 692 9.10e-56 199
MsG0480020788.01.T01 MTR_2g094570 65.678 472 86 13 1 406 1 462 0.0 581
MsG0480020788.01.T01 MTR_2g094570 61.157 121 30 3 406 509 533 653 4.94e-36 143
MsG0480020788.01.T01 MTR_1g064430 55.202 471 123 9 9 404 24 481 3.14e-167 491
MsG0480020788.01.T01 MTR_1g064430 73.077 78 21 0 445 522 610 687 1.37e-29 124
MsG0480020788.01.T01 MTR_1g064430 55.202 471 123 9 9 404 37 494 5.40e-167 491
MsG0480020788.01.T01 MTR_1g064430 73.077 78 21 0 445 522 623 700 1.73e-29 123
MsG0480020788.01.T01 MTR_1g094960 58.186 452 128 10 1 391 8 459 3.42e-164 481
MsG0480020788.01.T01 MTR_7g101280 52.174 460 147 8 9 399 28 483 1.60e-155 459
MsG0480020788.01.T01 MTR_0041s0110 52.174 460 147 8 9 399 28 483 1.60e-155 459
MsG0480020788.01.T01 MTR_7g101275 48.368 337 125 8 21 325 1 320 7.62e-96 298
MsG0480020788.01.T01 MTR_0041s0120 44.540 348 134 9 21 325 1 332 4.44e-86 273
MsG0480020788.01.T01 MTR_5g061220 38.776 441 197 14 12 398 19 440 3.65e-81 263
MsG0480020788.01.T01 MTR_2g024430 41.389 360 168 9 9 342 17 359 7.02e-80 259
MsG0480020788.01.T01 MTR_5g040880 37.819 431 220 11 4 398 3 421 1.42e-77 254
MsG0480020788.01.T01 MTR_5g082140 39.098 399 197 10 1 369 1 383 9.01e-76 247
MsG0480020788.01.T01 MTR_2g018690 39.173 411 194 11 2 376 13 403 4.71e-75 256
MsG0480020788.01.T01 MTR_8g079492 38.780 410 196 11 2 376 13 402 2.87e-73 251
MsG0480020788.01.T01 MTR_3g073420 56.585 205 86 1 9 210 16 220 9.88e-73 243
MsG0480020788.01.T01 MTR_3g073420 41.358 162 74 6 255 398 298 456 5.05e-22 100
MsG0480020788.01.T01 MTR_8g079492 38.443 411 197 11 2 376 13 403 2.25e-72 248
MsG0480020788.01.T01 MTR_2g006270 35.663 415 203 11 3 387 4 384 9.61e-69 229
MsG0480020788.01.T01 MTR_5g076270 38.655 357 178 7 5 328 17 365 2.52e-68 236
MsG0480020788.01.T01 MTR_2g014770 40.116 344 175 7 6 321 47 387 2.07e-67 229
MsG0480020788.01.T01 MTR_3g064050 37.632 380 194 8 6 352 20 389 2.54e-67 233
MsG0480020788.01.T01 MTR_2g043250 39.266 354 172 7 3 323 14 357 3.35e-67 236
MsG0480020788.01.T01 MTR_2g014770 36.730 422 223 11 6 386 47 465 5.08e-67 230
MsG0480020788.01.T01 MTR_1g024025 40.115 349 167 7 6 321 37 376 1.29e-66 234
MsG0480020788.01.T01 MTR_4g124900 38.220 382 191 8 3 352 14 382 1.99e-66 233
MsG0480020788.01.T01 MTR_4g124900 38.220 382 191 8 3 352 14 382 2.03e-66 234
MsG0480020788.01.T01 MTR_2g005240 31.171 632 286 20 12 520 23 628 6.57e-66 226
MsG0480020788.01.T01 MTR_8g100050 38.187 364 176 9 12 339 59 409 1.62e-65 226
MsG0480020788.01.T01 MTR_4g088210 40.176 341 171 8 12 321 38 376 2.86e-65 225
MsG0480020788.01.T01 MTR_4g088210 40.176 341 171 8 12 321 38 376 3.86e-65 225
MsG0480020788.01.T01 MTR_8g100050 38.187 364 176 9 12 339 59 409 4.06e-65 227
MsG0480020788.01.T01 MTR_2g093740 39.788 377 183 11 12 350 56 426 7.40e-65 224
MsG0480020788.01.T01 MTR_1g058210 36.111 360 208 7 1 341 1 357 1.24e-64 218
MsG0480020788.01.T01 MTR_7g062540 36.461 373 200 8 1 344 3 367 2.45e-64 223
MsG0480020788.01.T01 MTR_2g093740 39.788 377 183 11 12 350 56 426 2.74e-64 224
MsG0480020788.01.T01 MTR_2g093740 39.788 377 183 11 12 350 56 426 4.59e-64 224
MsG0480020788.01.T01 MTR_4g021580 38.378 370 196 11 7 350 14 377 7.89e-64 220
MsG0480020788.01.T01 MTR_4g021580 38.378 370 196 11 7 350 14 377 1.12e-63 220
MsG0480020788.01.T01 MTR_8g027440 37.366 372 193 6 3 342 16 379 1.39e-63 220
MsG0480020788.01.T01 MTR_8g101360 37.921 356 180 7 2 324 21 368 6.65e-63 223
MsG0480020788.01.T01 MTR_5g040740 39.809 314 162 6 1 299 1 302 2.54e-62 210
MsG0480020788.01.T01 MTR_2g093740 38.462 390 183 12 12 350 56 439 4.70e-61 214
MsG0480020788.01.T01 MTR_2g093740 38.462 390 183 12 12 350 56 439 7.91e-61 214
MsG0480020788.01.T01 MTR_2g093740 38.462 390 183 12 12 350 56 439 1.58e-60 214
MsG0480020788.01.T01 MTR_4g060460 37.736 371 183 8 12 342 54 416 8.17e-60 212
MsG0480020788.01.T01 MTR_4g060460 37.736 371 183 8 12 342 54 416 8.92e-60 212
MsG0480020788.01.T01 MTR_2g006380 33.415 407 208 14 7 387 15 384 2.99e-56 196
MsG0480020788.01.T01 MTR_8g079492 38.757 338 159 9 67 376 3 320 1.92e-54 197
MsG0480020788.01.T01 MTR_5g061890 36.011 361 160 13 9 327 9 340 1.49e-50 179
MsG0480020788.01.T01 MTR_5g060780 35.112 356 161 12 9 322 9 336 3.43e-50 178
MsG0480020788.01.T01 MTR_5g460920 35.112 356 161 12 9 322 9 336 8.04e-49 174
MsG0480020788.01.T01 MTR_5g062970 42.632 190 102 3 12 195 38 226 1.79e-47 166
MsG0480020788.01.T01 MTR_2g093740 41.429 280 138 7 91 350 23 296 4.13e-45 168
MsG0480020788.01.T01 MTR_2g093740 41.429 280 138 7 91 350 23 296 5.80e-45 169
MsG0480020788.01.T01 MTR_8g446900 31.307 329 182 7 56 362 12 318 4.46e-43 158
MsG0480020788.01.T01 MTR_2g093740 40.273 293 136 9 91 350 23 309 1.13e-41 159
MsG0480020788.01.T01 MTR_2g093740 39.590 293 138 8 91 350 23 309 1.36e-41 159
MsG0480020788.01.T01 MTR_5g060630 30.909 385 204 14 9 338 9 386 6.72e-38 147
MsG0480020788.01.T01 MTR_5g460740 30.909 385 204 14 9 338 9 386 6.72e-38 147
MsG0480020788.01.T01 MTR_5g060770 27.473 364 189 11 55 397 6 315 2.43e-22 99.0
MsG0480020788.01.T01 MTR_5g062960 32.692 156 67 4 260 398 30 164 1.81e-12 67.0
MsG0480020788.01.T01 MTR_1g058350 32.432 148 83 4 102 237 71 213 5.48e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020788.01.T01 AT4G30080 55.388 464 138 13 4 404 12 469 5.05e-162 477
MsG0480020788.01.T01 AT4G30080 68.182 88 28 0 440 527 581 668 1.55e-32 132
MsG0480020788.01.T01 AT2G28350 55.085 472 106 12 3 389 2 452 9.70e-159 468
MsG0480020788.01.T01 AT2G28350 60.952 105 37 2 428 528 562 666 2.60e-32 132
MsG0480020788.01.T01 AT2G28350 55.085 472 106 12 3 389 2 452 1.42e-158 469
MsG0480020788.01.T01 AT2G28350 60.800 125 45 2 428 548 562 686 9.62e-41 157
MsG0480020788.01.T01 AT1G77850 39.333 450 205 12 9 398 16 457 2.08e-96 305
MsG0480020788.01.T01 AT1G77850 39.333 450 205 12 9 398 16 457 3.51e-96 305
MsG0480020788.01.T01 AT2G46530 32.612 601 318 18 12 548 21 598 9.08e-75 249
MsG0480020788.01.T01 AT2G46530 32.612 601 318 18 12 548 42 619 1.49e-74 249
MsG0480020788.01.T01 AT1G30330 39.947 378 184 9 3 347 14 381 1.30e-72 249
MsG0480020788.01.T01 AT1G30330 39.894 376 183 9 5 347 18 383 4.66e-72 248
MsG0480020788.01.T01 AT1G30330 39.894 376 183 9 5 347 18 383 4.66e-72 248
MsG0480020788.01.T01 AT3G61830 31.005 587 318 16 4 527 14 576 2.28e-71 239
MsG0480020788.01.T01 AT5G37020 38.810 353 175 7 9 328 19 363 5.00e-69 237
MsG0480020788.01.T01 AT5G37020 38.810 353 175 7 9 328 19 363 1.02e-68 237
MsG0480020788.01.T01 AT2G33860 39.466 337 175 5 12 321 54 388 5.95e-67 228
MsG0480020788.01.T01 AT1G19850 39.255 349 175 6 4 321 35 377 1.12e-66 232
MsG0480020788.01.T01 AT1G19850 39.255 349 175 6 4 321 46 388 1.55e-66 232
MsG0480020788.01.T01 AT1G19220 38.961 385 184 10 3 352 14 382 8.01e-66 232
MsG0480020788.01.T01 AT5G60450 38.630 365 181 8 12 340 41 398 1.09e-64 225
MsG0480020788.01.T01 AT5G60450 38.630 365 181 8 12 340 65 422 1.56e-64 225
MsG0480020788.01.T01 AT1G59750 38.606 373 183 9 12 350 22 382 3.49e-64 222
MsG0480020788.01.T01 AT1G59750 38.606 373 183 9 12 350 22 382 3.53e-64 222
MsG0480020788.01.T01 AT1G59750 38.606 373 183 9 12 350 22 382 3.53e-64 222
MsG0480020788.01.T01 AT1G59750 38.606 373 183 9 12 350 22 382 3.55e-64 222
MsG0480020788.01.T01 AT5G20730 38.227 361 196 6 3 338 15 373 3.69e-64 227
MsG0480020788.01.T01 AT5G20730 37.396 361 200 5 3 338 15 374 2.39e-63 225
MsG0480020788.01.T01 AT5G20730 37.396 361 200 5 3 338 15 374 2.77e-63 225
MsG0480020788.01.T01 AT5G62000 38.667 375 171 12 9 340 52 410 5.02e-63 222
MsG0480020788.01.T01 AT5G62000 38.667 375 171 12 9 340 52 410 5.02e-63 222
MsG0480020788.01.T01 AT5G62000 38.667 375 171 12 9 340 52 410 5.02e-63 222
MsG0480020788.01.T01 AT5G62000 38.667 375 171 12 9 340 52 410 5.02e-63 222
MsG0480020788.01.T01 AT5G62000 38.667 375 171 12 9 340 52 410 6.69e-63 221
MsG0480020788.01.T01 AT4G23980 38.551 345 171 9 8 321 8 342 3.99e-62 216
MsG0480020788.01.T01 AT4G23980 38.551 345 171 9 8 321 8 342 4.39e-62 216
MsG0480020788.01.T01 AT3G61830 30.303 528 292 13 52 527 22 525 3.36e-58 203
MsG0480020788.01.T01 AT1G35240 30.293 581 327 19 6 526 21 583 2.39e-57 202
MsG0480020788.01.T01 AT2G46530 31.388 497 266 13 106 548 36 511 3.00e-53 189
MsG0480020788.01.T01 AT1G34390 28.305 590 337 18 6 525 21 594 1.32e-52 189
MsG0480020788.01.T01 AT1G34310 34.225 374 187 12 6 342 21 372 2.66e-50 182
MsG0480020788.01.T01 AT1G34170 28.187 557 312 19 6 528 19 521 1.55e-49 179
MsG0480020788.01.T01 AT1G35540 34.085 355 192 9 6 335 21 358 1.71e-49 181
MsG0480020788.01.T01 AT1G35520 34.454 357 197 9 3 331 18 365 4.59e-49 179
MsG0480020788.01.T01 AT1G34410 34.311 341 190 8 6 321 21 352 6.24e-49 179
MsG0480020788.01.T01 AT5G37020 38.672 256 125 4 97 328 21 268 2.56e-47 176
MsG0480020788.01.T01 AT1G34170 33.041 342 195 8 6 321 19 352 3.71e-47 172
MsG0480020788.01.T01 AT2G33860 40.948 232 118 3 107 321 2 231 1.22e-44 164
MsG0480020788.01.T01 AT1G34170 32.456 342 171 10 6 321 19 326 1.10e-42 159
MsG0480020788.01.T01 AT1G43950 39.524 210 110 6 6 206 21 222 1.45e-38 141
MsG0480020788.01.T01 AT2G36080 37.838 111 63 3 102 207 33 142 1.38e-11 63.9
MsG0480020788.01.T01 AT2G36080 37.838 111 63 3 102 207 33 142 1.38e-11 63.9
MsG0480020788.01.T01 AT2G36080 37.838 111 63 3 102 207 33 142 4.05e-11 63.5
MsG0480020788.01.T01 AT2G36080 37.838 111 63 3 102 207 33 142 4.12e-11 63.9

Find 142 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGATCATGTGAAATTTA+AGG 0.117603 4:+48336322 MsG0480020788.01.T01:three_prime_UTR
TTCTAGGATTAGTTGGTTTA+TGG 0.143329 4:+48334116 MsG0480020788.01.T01:CDS
TTGAAACTGAAGACTCTTCT+AGG 0.222931 4:+48334100 MsG0480020788.01.T01:CDS
ACCCTTGATTTATCACTTCT+TGG 0.257467 4:+48335528 MsG0480020788.01.T01:CDS
GGAAAGTGAGAAAGGGTATT+TGG 0.265159 4:+48333138 MsG0480020788.01.T01:CDS
TTGACAATTCTGACAGATTC+AGG 0.268164 4:+48336034 MsG0480020788.01.T01:CDS
TCATCTTGTGGATGGACTTC+AGG 0.278431 4:+48333787 MsG0480020788.01.T01:CDS
CTAATACAAACATTGATCTA+AGG 0.281084 4:+48333257 MsG0480020788.01.T01:CDS
AACAATGTAAATTGTGGAAT+TGG 0.287100 4:+48333820 MsG0480020788.01.T01:CDS
TAATAATGTTAACCAAGATT+TGG 0.290265 4:+48336517 MsG0480020788.01.T01:three_prime_UTR
GGGCCAAACAGCCCCTTCTT+TGG 0.299415 4:+48335010 MsG0480020788.01.T01:CDS
GGAGCCAGGCATGCTCAATT+TGG 0.301173 4:+48335064 MsG0480020788.01.T01:CDS
GGGAACAATTGCTTCTGTTC+AGG 0.316761 4:+48334137 MsG0480020788.01.T01:CDS
CACCAGCAACAAGCTTCTTC+TGG 0.317024 4:-48333675 None:intergenic
ATGAGGATTCAATGGTGTTC+TGG 0.321716 4:+48334057 MsG0480020788.01.T01:CDS
TCTAGGATTAGTTGGTTTAT+GGG 0.340586 4:+48334117 MsG0480020788.01.T01:CDS
CGCCGGCACTTGCTTACAAC+AGG 0.344728 4:+48333634 MsG0480020788.01.T01:CDS
AATTGTGGAATTGGACCTTT+TGG 0.346313 4:+48333829 MsG0480020788.01.T01:CDS
TGTGGATGGACTTCAGGTTC+AGG 0.346418 4:+48333793 MsG0480020788.01.T01:CDS
TGGCAACTTGGATTGGATAT+TGG 0.355146 4:+48335465 MsG0480020788.01.T01:CDS
TAATGAAGCTTCTTCCTTTG+AGG 0.360496 4:+48333362 MsG0480020788.01.T01:CDS
TTCACCACTGATTCTTTGTA+AGG 0.370999 4:+48333288 MsG0480020788.01.T01:CDS
TTCTTCCTTGGTGGAGTGAA+AGG 0.377163 4:-48334911 None:intergenic
GGTTGTTGGTGTTAAATTCA+TGG 0.380615 4:+48333309 MsG0480020788.01.T01:CDS
AACTGAAGTTTATTGTTGTA+AGG 0.391924 4:-48335111 None:intergenic
AAACCAAAGAAGGGGCTGTT+TGG 0.394320 4:-48335013 None:intergenic
CAATGCTCCTGCATGTATAC+AGG 0.395010 4:+48335042 MsG0480020788.01.T01:CDS
AGGATGTGCACGGTGAGCTT+TGG 0.396378 4:+48333581 MsG0480020788.01.T01:CDS
AAGACTCTTCTAGGATTAGT+TGG 0.399400 4:+48334109 MsG0480020788.01.T01:CDS
TTCGCCACCACCGTCTGAAC+AGG 0.425252 4:-48333559 None:intergenic
CTGATTCTTTGTAAGGTTGT+TGG 0.426252 4:+48333295 MsG0480020788.01.T01:CDS
CTAATGCTGCTGAGTTTAGT+TGG 0.428567 4:+48335445 MsG0480020788.01.T01:CDS
CATTATGCAAATATGCTTAG+AGG 0.429939 4:-48336237 None:intergenic
GCCTACTACTACAGGTTACA+TGG 0.430758 4:+48334801 MsG0480020788.01.T01:intron
ACAGGTTCTGTGAAGCAAAT+TGG 0.432138 4:+48335639 MsG0480020788.01.T01:CDS
TGAAGGTGGTGGTGATGGTT+TGG 0.435992 4:+48333405 MsG0480020788.01.T01:CDS
ACGGTGAGCTTTGGAAGTTT+AGG 0.437969 4:+48333590 MsG0480020788.01.T01:CDS
TGAGGATTCAATGGTGTTCT+GGG 0.446254 4:+48334058 MsG0480020788.01.T01:CDS
AACCAAGAAGTGATAAATCA+AGG 0.446549 4:-48335530 None:intergenic
TAAATGTGGGGTCCAAATCT+TGG 0.447589 4:-48336529 None:intergenic
TTCAATGGTGTTCTGGGATG+AGG 0.448575 4:+48334064 MsG0480020788.01.T01:CDS
TCCTCCAAATTGAGCATGCC+TGG 0.451469 4:-48335068 None:intergenic
GGAAACCGCAGCTTCTTCCT+TGG 0.455567 4:-48334923 None:intergenic
CAGCTATGGCATGCTTGTGC+TGG 0.456859 4:+48333166 MsG0480020788.01.T01:CDS
AACCGCAGCTTCTTCCTTGG+TGG 0.459037 4:-48334920 None:intergenic
AAGTTTAGGCATATTTATAG+AGG 0.471597 4:+48333604 MsG0480020788.01.T01:CDS
TAACATGTTTGATTTAGAAA+AGG 0.472953 4:+48335581 MsG0480020788.01.T01:CDS
AACCAGAAGAAGCTTGTTGC+TGG 0.473424 4:+48333673 MsG0480020788.01.T01:CDS
GCTGAGTTTAGTTGGCAACT+TGG 0.473727 4:+48335453 MsG0480020788.01.T01:CDS
TATGATGAAGGTGGTGGTGA+TGG 0.474350 4:+48333400 MsG0480020788.01.T01:CDS
TCTTCCTTGGTGGAGTGAAA+GGG 0.480887 4:-48334910 None:intergenic
TCAGAGCTTGGTTATGATGA+AGG 0.480927 4:+48333388 MsG0480020788.01.T01:CDS
TCAATGAAGGAAAGTGAGAA+AGG 0.482138 4:+48333130 None:intergenic
ATTGTCAGATAAACCAAAGA+AGG 0.484820 4:-48335023 None:intergenic
TCACAAAGGTGAACATGGAT+TGG 0.488178 4:+48336195 MsG0480020788.01.T01:CDS
GTTTAGTTGGCAACTTGGAT+TGG 0.492268 4:+48335458 MsG0480020788.01.T01:CDS
AGGGGCTGTTTGGCCCGAGC+TGG 0.496697 4:-48335003 None:intergenic
CAAAATCAAATCACTAAATG+TGG 0.497749 4:-48336543 None:intergenic
TGTTCAGACGGTGGTGGCGA+AGG 0.501569 4:+48333561 MsG0480020788.01.T01:CDS
GGTTCTAACAATGTAAATTG+TGG 0.502204 4:+48333814 MsG0480020788.01.T01:CDS
AGAAGAGTCTTCAGTTTCAA+AGG 0.502379 4:-48334097 None:intergenic
TTGATGGTTCATCTTGTGGA+TGG 0.504684 4:+48333779 MsG0480020788.01.T01:CDS
AGAAGATTCTCTTATCAAGA+TGG 0.506507 4:+48336427 MsG0480020788.01.T01:three_prime_UTR
GATATTGTGTTTACTTAATG+TGG 0.509710 4:+48336274 MsG0480020788.01.T01:three_prime_UTR
AATCTGATGCAAACAATGGT+GGG 0.510020 4:+48333470 MsG0480020788.01.T01:CDS
CTATGGCATGCTTGTGCTGG+TGG 0.512929 4:+48333169 MsG0480020788.01.T01:CDS
GCATGCTTGTGCTGGTGGAA+TGG 0.513876 4:+48333174 MsG0480020788.01.T01:CDS
TTGTGGAAAGTAGAAAACTT+TGG 0.520773 4:-48333218 None:intergenic
TGTTAAGGCTTCAGCTGTGA+AGG 0.522163 4:+48334029 MsG0480020788.01.T01:intron
CCTTTGAGGAATTCAGAGCT+TGG 0.522861 4:+48333376 MsG0480020788.01.T01:CDS
GGCTGAGCCGCCTGTTCAGA+CGG 0.523312 4:+48333549 MsG0480020788.01.T01:CDS
CTGCATGTATACAGGGAGCC+AGG 0.523472 4:+48335050 MsG0480020788.01.T01:CDS
GAAGAGTCTTCAGTTTCAAA+GGG 0.524779 4:-48334096 None:intergenic
AAATAATGATGCATATATCA+TGG 0.525854 4:+48336481 MsG0480020788.01.T01:three_prime_UTR
AAAATCAAATCACTAAATGT+GGG 0.528594 4:-48336542 None:intergenic
TAATACAAACATTGATCTAA+GGG 0.528805 4:+48333258 MsG0480020788.01.T01:CDS
AAATTGGTGAAGAACCCTTC+AGG 0.536171 4:+48335655 MsG0480020788.01.T01:CDS
CAATGAAGGAAAGTGAGAAA+GGG 0.542351 4:+48333131 None:intergenic
ACCCTGTTGTAAGCAAGTGC+CGG 0.547262 4:-48333636 None:intergenic
GCATGTTCAGCATGTCCTTG+TGG 0.548555 4:-48333235 None:intergenic
CAGCTGTGAAGGCTGCTATG+AGG 0.549739 4:+48334040 MsG0480020788.01.T01:CDS
CTGGCTCCCTGTATACATGC+AGG 0.552767 4:-48335049 None:intergenic
GATACTAATTCGACCAACCA+CGG 0.553761 4:-48334863 None:intergenic
ATCGTCTCAGCACAGTACCT+TGG 0.557673 4:-48333505 None:intergenic
TCTGATGCAAACAATGGTGG+GGG 0.561128 4:+48333472 MsG0480020788.01.T01:CDS
GCCGCCTGTTCAGACGGTGG+TGG 0.561486 4:+48333555 MsG0480020788.01.T01:CDS
ATACTAATTCGACCAACCAC+GGG 0.564828 4:-48334862 None:intergenic
GCCAGGCATGCTCAATTTGG+AGG 0.565841 4:+48335067 MsG0480020788.01.T01:CDS
ATTGGATATTGGTCATTGCA+AGG 0.566046 4:+48335476 MsG0480020788.01.T01:CDS
GGAACTCACAAAGGTGAACA+TGG 0.567844 4:+48336190 MsG0480020788.01.T01:CDS
GAAGCGTGTTAGCCCGTGGT+TGG 0.567936 4:+48334850 MsG0480020788.01.T01:CDS
TTGTCAGATAAACCAAAGAA+GGG 0.569032 4:-48335022 None:intergenic
ATAGTAAAGACAAAGAGAAG+TGG 0.569647 4:+48335391 MsG0480020788.01.T01:CDS
CAATCTGATGCAAACAATGG+TGG 0.570087 4:+48333469 MsG0480020788.01.T01:CDS
AGTTTAGGCATATTTATAGA+GGG 0.570327 4:+48333605 MsG0480020788.01.T01:CDS
GCTTGTTGCTGGTGATTCTG+TGG 0.572232 4:+48333684 MsG0480020788.01.T01:CDS
ACCAAGAAGTGATAAATCAA+GGG 0.572563 4:-48335529 None:intergenic
AAAACTTTGGAGTTCACTTG+AGG 0.572950 4:-48333205 None:intergenic
ATCTGATGCAAACAATGGTG+GGG 0.580572 4:+48333471 MsG0480020788.01.T01:CDS
AAAGTCTTAGCAAAAGATGC+AGG 0.580849 4:-48333442 None:intergenic
CCAAGCTCTGAATTCCTCAA+AGG 0.581047 4:-48333376 None:intergenic
GAGAATGGTGAATTGTGTGT+TGG 0.591957 4:+48333721 MsG0480020788.01.T01:CDS
AATTGTGTGTTGGAATTCGT+AGG 0.592214 4:+48333731 MsG0480020788.01.T01:CDS
TTTATAGAGGGACACCGCGC+CGG 0.597722 4:+48333617 MsG0480020788.01.T01:CDS
CTTTCCGAGGCTTGATTACG+CGG 0.601538 4:+48333528 MsG0480020788.01.T01:CDS
TTGCCTGAAAACGTCGGTGA+CGG 0.603464 4:-48334980 None:intergenic
TGGAGTCAGAAGATGTTGGA+AGG 0.603517 4:+48335505 MsG0480020788.01.T01:CDS
AGGCTGCTATGAGGATTCAA+TGG 0.603915 4:+48334049 MsG0480020788.01.T01:CDS
CTCCACCAAGGAAGAAGCTG+CGG 0.604549 4:+48334918 MsG0480020788.01.T01:CDS
GGTATTTGGATCCACAGCTA+TGG 0.606132 4:+48333152 MsG0480020788.01.T01:CDS
GCCACCACCGTCTGAACAGG+CGG 0.614156 4:-48333556 None:intergenic
TTCTTGGAGTCAGAAGATGT+TGG 0.615581 4:+48335501 MsG0480020788.01.T01:CDS
AAAGGGCTGAAATGAATGAC+TGG 0.619094 4:-48334893 None:intergenic
CCTACTACTACAGGTTACAT+GGG 0.623681 4:+48334802 MsG0480020788.01.T01:intron
TGACGGAAACTGAACATCGA+GGG 0.624449 4:-48334963 None:intergenic
GCACAAGCATGCCATAGCTG+TGG 0.631502 4:-48333163 None:intergenic
GTGCTGAGACGATCTTTCCG+AGG 0.634969 4:+48333515 MsG0480020788.01.T01:CDS
ACACAAAAGCAATACCTGAA+GGG 0.638283 4:-48335669 None:intergenic
TCAGCCGCGTAATCAAGCCT+CGG 0.639890 4:-48333532 None:intergenic
GACGGAAACTGAACATCGAG+GGG 0.641637 4:-48334962 None:intergenic
AATGCTCCTGCATGTATACA+GGG 0.643769 4:+48335043 MsG0480020788.01.T01:CDS
GGCTGACCCTGAAACTGATG+AGG 0.645568 4:+48333330 MsG0480020788.01.T01:CDS
CTTGGTTATGATGAAGGTGG+TGG 0.646806 4:+48333394 MsG0480020788.01.T01:CDS
ACGTGAAGCGTGTTAGCCCG+TGG 0.646883 4:+48334846 MsG0480020788.01.T01:CDS
AAATCAAATCACTAAATGTG+GGG 0.647086 4:-48336541 None:intergenic
ATTGTGTGTTGGAATTCGTA+GGG 0.656892 4:+48333732 MsG0480020788.01.T01:CDS
TCACAGAACCTGTTGCATCA+CGG 0.662294 4:-48335629 None:intergenic
GTTGTAAGCAAGTGCCGGCG+CGG 0.664793 4:-48333631 None:intergenic
TGAGCCGCCTGTTCAGACGG+TGG 0.665475 4:+48333552 MsG0480020788.01.T01:CDS
GGCACTTGCTTACAACAGGG+TGG 0.673448 4:+48333638 MsG0480020788.01.T01:CDS
TGGATAACAGGAACTCACAA+AGG 0.673838 4:+48336181 MsG0480020788.01.T01:CDS
TGTCAGATAAACCAAAGAAG+GGG 0.674937 4:-48335021 None:intergenic
AGCTGGTTGCCTGAAAACGT+CGG 0.679058 4:-48334986 None:intergenic
ACAACCTTACAAAGAATCAG+TGG 0.680398 4:-48333292 None:intergenic
CTGATGCAAACAATGGTGGG+GGG 0.689649 4:+48333473 MsG0480020788.01.T01:CDS
GCCGGCACTTGCTTACAACA+GGG 0.691948 4:+48333635 MsG0480020788.01.T01:CDS
TCAGCCCTTTCACTCCACCA+AGG 0.700439 4:+48334906 MsG0480020788.01.T01:CDS
GAGCTTGGTTATGATGAAGG+TGG 0.703479 4:+48333391 MsG0480020788.01.T01:CDS
ACTCAATCTGATGCAAACAA+TGG 0.706199 4:+48333466 MsG0480020788.01.T01:CDS
GTGACGGAAACTGAACATCG+AGG 0.721853 4:-48334964 None:intergenic
GTGGTGGCGAAGGATGTGCA+CGG 0.739739 4:+48333571 MsG0480020788.01.T01:CDS
ACGGAAACTGAACATCGAGG+GGG 0.755057 4:-48334961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGAACAGAATATTTTTA+TGG + Chr4:48336381-48336400 MsG0480020788.01.T01:three_prime_UTR 15.0%
!!! ATTGTTTTTTAGTTACAATT+TGG + Chr4:48334208-48334227 MsG0480020788.01.T01:intron 15.0%
!!! TTTGTTATTGTTCATTTTTA+TGG + Chr4:48334300-48334319 MsG0480020788.01.T01:intron 15.0%
!! AAAATCAAATCACTAAATGT+GGG - Chr4:48336545-48336564 None:intergenic 20.0%
!! AAATAATGATGCATATATCA+TGG + Chr4:48336481-48336500 MsG0480020788.01.T01:three_prime_UTR 20.0%
!! AATGAAACAATTAGTAGTAT+AGG - Chr4:48334416-48334435 None:intergenic 20.0%
!! GAAATGTCTTATATAATAAG+AGG + Chr4:48336136-48336155 MsG0480020788.01.T01:intron 20.0%
!! TAATAATGTTAACCAAGATT+TGG + Chr4:48336517-48336536 MsG0480020788.01.T01:three_prime_UTR 20.0%
!! TAATACAAACATTGATCTAA+GGG + Chr4:48333258-48333277 MsG0480020788.01.T01:CDS 20.0%
!! TTATGATCATGTGAAATTTA+AGG + Chr4:48336322-48336341 MsG0480020788.01.T01:three_prime_UTR 20.0%
!!! ATAAGAGAATCTTCTTTTTT+TGG - Chr4:48336422-48336441 None:intergenic 20.0%
!!! TAACATGTTTGATTTAGAAA+AGG + Chr4:48335581-48335600 MsG0480020788.01.T01:CDS 20.0%
! AAAAAAGAAAATGCTCCAAA+AGG - Chr4:48333847-48333866 None:intergenic 25.0%
! AAATCAAATCACTAAATGTG+GGG - Chr4:48336544-48336563 None:intergenic 25.0%
! AACAATGTAAATTGTGGAAT+TGG + Chr4:48333820-48333839 MsG0480020788.01.T01:CDS 25.0%
! AACTGAAGTTTATTGTTGTA+AGG - Chr4:48335114-48335133 None:intergenic 25.0%
! AAGTTTAGGCATATTTATAG+AGG + Chr4:48333604-48333623 MsG0480020788.01.T01:CDS 25.0%
! ACAACAATAAACTTCAGTTA+GGG + Chr4:48335115-48335134 MsG0480020788.01.T01:intron 25.0%
! AGGGAAAAAATGATAAAGTT+TGG + Chr4:48335251-48335270 MsG0480020788.01.T01:intron 25.0%
! AGTTTAGGCATATTTATAGA+GGG + Chr4:48333605-48333624 MsG0480020788.01.T01:CDS 25.0%
! CAAAATCAAATCACTAAATG+TGG - Chr4:48336546-48336565 None:intergenic 25.0%
! CTAATACAAACATTGATCTA+AGG + Chr4:48333257-48333276 MsG0480020788.01.T01:CDS 25.0%
! GATATTGTGTTTACTTAATG+TGG + Chr4:48336274-48336293 MsG0480020788.01.T01:three_prime_UTR 25.0%
! TAAAAAACAATACCTGAAGA+AGG - Chr4:48334199-48334218 None:intergenic 25.0%
! TAAGTTTCACAATACATTCT+AGG + Chr4:48335846-48335865 MsG0480020788.01.T01:intron 25.0%
! TACAACAATAAACTTCAGTT+AGG + Chr4:48335114-48335133 MsG0480020788.01.T01:intron 25.0%
! TTGAACACATCTTTACATAA+GGG + Chr4:48334241-48334260 MsG0480020788.01.T01:intron 25.0%
!! AAAATAGAGTGAAGTCATTT+TGG - Chr4:48335904-48335923 None:intergenic 25.0%
!! ATTTTGCTACTGTACAATAA+TGG - Chr4:48335944-48335963 None:intergenic 25.0%
!! TTTTGCTACTGTACAATAAT+GGG - Chr4:48335943-48335962 None:intergenic 25.0%
!!! AAACATCAGTTTTGTCTTTT+TGG + Chr4:48335306-48335325 MsG0480020788.01.T01:intron 25.0%
!!! ATTGAGAAATGTTGTTTTGA+TGG + Chr4:48333888-48333907 MsG0480020788.01.T01:CDS 25.0%
!!! GAAATAACCTGTTTTAAGTA+GGG + Chr4:48334676-48334695 MsG0480020788.01.T01:intron 25.0%
!!! TGAAATAACCTGTTTTAAGT+AGG + Chr4:48334675-48334694 MsG0480020788.01.T01:intron 25.0%
!!! TGAACAGAATATTTTTATGG+AGG + Chr4:48336384-48336403 MsG0480020788.01.T01:three_prime_UTR 25.0%
!!! TGAACTTTTTTTCAAACTCT+TGG + Chr4:48334623-48334642 MsG0480020788.01.T01:intron 25.0%
AACCAAGAAGTGATAAATCA+AGG - Chr4:48335533-48335552 None:intergenic 30.0%
ACCAAGAAGTGATAAATCAA+GGG - Chr4:48335532-48335551 None:intergenic 30.0%
AGAAGATTCTCTTATCAAGA+TGG + Chr4:48336427-48336446 MsG0480020788.01.T01:three_prime_UTR 30.0%
AGTAAACAACTTCAAATGGT+TGG - Chr4:48333981-48334000 None:intergenic 30.0%
AGTACTGCTATTGGATTAAT+GGG + Chr4:48335964-48335983 MsG0480020788.01.T01:intron 30.0%
ATAGTAAAGACAAAGAGAAG+TGG + Chr4:48335391-48335410 MsG0480020788.01.T01:CDS 30.0%
ATTGTCAGATAAACCAAAGA+AGG - Chr4:48335026-48335045 None:intergenic 30.0%
CATTATGCAAATATGCTTAG+AGG - Chr4:48336240-48336259 None:intergenic 30.0%
GAAACAATTAGTAGTATAGG+AGG - Chr4:48334413-48334432 None:intergenic 30.0%
GGATAGTAAACAACTTCAAA+TGG - Chr4:48333985-48334004 None:intergenic 30.0%
GTTGAACACATCTTTACATA+AGG + Chr4:48334240-48334259 MsG0480020788.01.T01:intron 30.0%
TAGCAAAATAGTACTGCTAT+TGG + Chr4:48335955-48335974 MsG0480020788.01.T01:intron 30.0%
TAGTACTGCTATTGGATTAA+TGG + Chr4:48335963-48335982 MsG0480020788.01.T01:intron 30.0%
TTGTAGACTAAACTAACAAC+CGG - Chr4:48335810-48335829 None:intergenic 30.0%
TTGTCAGATAAACCAAAGAA+GGG - Chr4:48335025-48335044 None:intergenic 30.0%
TTGTGGAAAGTAGAAAACTT+TGG - Chr4:48333221-48333240 None:intergenic 30.0%
! AAAGTTTTCTACTTTCCACA+AGG + Chr4:48333220-48333239 MsG0480020788.01.T01:CDS 30.0%
! GACTCAATTTTATGCTTCTT+TGG + Chr4:48334263-48334282 MsG0480020788.01.T01:intron 30.0%
! GGTTCTAACAATGTAAATTG+TGG + Chr4:48333814-48333833 MsG0480020788.01.T01:CDS 30.0%
! TTCACGTTTTGTAGTAAATC+AGG - Chr4:48334833-48334852 None:intergenic 30.0%
! TTCATATTCAGACTTTTCAG+AGG - Chr4:48336368-48336387 None:intergenic 30.0%
! TTTTCACTCTTGTGATTATG+AGG + Chr4:48334651-48334670 MsG0480020788.01.T01:intron 30.0%
!! AGGATCTTGATTGTTTTTCA+GGG + Chr4:48336156-48336175 MsG0480020788.01.T01:intron 30.0%
!! TCTAGGATTAGTTGGTTTAT+GGG + Chr4:48334117-48334136 MsG0480020788.01.T01:CDS 30.0%
!! TTCATTTTTATGGTCATCTC+TGG + Chr4:48334310-48334329 MsG0480020788.01.T01:intron 30.0%
!! TTCTAGGATTAGTTGGTTTA+TGG + Chr4:48334116-48334135 MsG0480020788.01.T01:CDS 30.0%
!!! ATTTTTTCCCTATACTCAAC+AGG - Chr4:48335242-48335261 None:intergenic 30.0%
!!! GTGTCTTTTGCTAGTTTTTT+TGG + Chr4:48335783-48335802 MsG0480020788.01.T01:intron 30.0%
!!! TGTTTTGATGGTAATTTGAG+TGG + Chr4:48333900-48333919 MsG0480020788.01.T01:intron 30.0%
!!! TTTTGCTAGTTTTTTTGGTC+CGG + Chr4:48335788-48335807 MsG0480020788.01.T01:intron 30.0%
AAAGTCTTAGCAAAAGATGC+AGG - Chr4:48333445-48333464 None:intergenic 35.0%
AAATCCTACTATGCACATCA+AGG - Chr4:48335164-48335183 None:intergenic 35.0%
AACACAAAAGCAATACCTGA+AGG - Chr4:48335673-48335692 None:intergenic 35.0%
AACATCTCCCTACTTAAAAC+AGG - Chr4:48334686-48334705 None:intergenic 35.0%
AATCTGATGCAAACAATGGT+GGG + Chr4:48333470-48333489 MsG0480020788.01.T01:CDS 35.0%
AATTGTGTGTTGGAATTCGT+AGG + Chr4:48333731-48333750 MsG0480020788.01.T01:CDS 35.0%
ACAACCTTACAAAGAATCAG+TGG - Chr4:48333295-48333314 None:intergenic 35.0%
ACACAAAAGCAATACCTGAA+GGG - Chr4:48335672-48335691 None:intergenic 35.0%
ACCCTTGATTTATCACTTCT+TGG + Chr4:48335528-48335547 MsG0480020788.01.T01:CDS 35.0%
ACTCAATCTGATGCAAACAA+TGG + Chr4:48333466-48333485 MsG0480020788.01.T01:CDS 35.0%
AGAAGAGTCTTCAGTTTCAA+AGG - Chr4:48334100-48334119 None:intergenic 35.0%
ATGTTTGGAAGCTGTGAAAT+TGG + Chr4:48333946-48333965 MsG0480020788.01.T01:intron 35.0%
ATTGGATATTGGTCATTGCA+AGG + Chr4:48335476-48335495 MsG0480020788.01.T01:CDS 35.0%
ATTGTGTGTTGGAATTCGTA+GGG + Chr4:48333732-48333751 MsG0480020788.01.T01:CDS 35.0%
ATTGTTATGCCTACTACTAC+AGG + Chr4:48334793-48334812 MsG0480020788.01.T01:intron 35.0%
CAAAAACCTCATCAGTTTCA+GGG - Chr4:48333339-48333358 None:intergenic 35.0%
CAATCTGGGCAATAATATCA+AGG - Chr4:48334598-48334617 None:intergenic 35.0%
CTGATTCTTTGTAAGGTTGT+TGG + Chr4:48333295-48333314 MsG0480020788.01.T01:CDS 35.0%
GAAGAGTCTTCAGTTTCAAA+GGG - Chr4:48334099-48334118 None:intergenic 35.0%
GTACTGCTATTGGATTAATG+GGG + Chr4:48335965-48335984 MsG0480020788.01.T01:intron 35.0%
GTGATATTGTGGATAATCAC+AGG + Chr4:48334525-48334544 MsG0480020788.01.T01:intron 35.0%
TAATGAAGCTTCTTCCTTTG+AGG + Chr4:48333362-48333381 MsG0480020788.01.T01:CDS 35.0%
TACTGCTATTGGATTAATGG+GGG + Chr4:48335966-48335985 MsG0480020788.01.T01:intron 35.0%
TATCATGCCTGTTGAGTATA+GGG + Chr4:48335232-48335251 MsG0480020788.01.T01:intron 35.0%
TGATATTATTGCCCAGATTG+CGG + Chr4:48334598-48334617 MsG0480020788.01.T01:intron 35.0%
TGTCAGATAAACCAAAGAAG+GGG - Chr4:48335024-48335043 None:intergenic 35.0%
TTATCATGCCTGTTGAGTAT+AGG + Chr4:48335231-48335250 MsG0480020788.01.T01:intron 35.0%
TTGAAACTGAAGACTCTTCT+AGG + Chr4:48334100-48334119 MsG0480020788.01.T01:CDS 35.0%
TTGACAATTCTGACAGATTC+AGG + Chr4:48336034-48336053 MsG0480020788.01.T01:CDS 35.0%
! AATTGTGGAATTGGACCTTT+TGG + Chr4:48333829-48333848 MsG0480020788.01.T01:CDS 35.0%
! AGACAAAGAGAAGTGGTTTT+TGG + Chr4:48335398-48335417 MsG0480020788.01.T01:CDS 35.0%
! ATTTGTTGCTCAGTGAGTAT+TGG - Chr4:48335336-48335355 None:intergenic 35.0%
! GTCGATTTAGCTGAAATCAT+AGG + Chr4:48334371-48334390 MsG0480020788.01.T01:intron 35.0%
! TTTTGAATAAACAAGCGCCT+CGG + Chr4:48335691-48335710 MsG0480020788.01.T01:intron 35.0%
! TTTTGGATGCATTTTCAGCT+GGG + Chr4:48335415-48335434 MsG0480020788.01.T01:CDS 35.0%
! TTTTTGGATGCATTTTCAGC+TGG + Chr4:48335414-48335433 MsG0480020788.01.T01:CDS 35.0%
!! AAAACTTTGGAGTTCACTTG+AGG - Chr4:48333208-48333227 None:intergenic 35.0%
!! AAGACTCTTCTAGGATTAGT+TGG + Chr4:48334109-48334128 MsG0480020788.01.T01:CDS 35.0%
!! GAGGATCTTGATTGTTTTTC+AGG + Chr4:48336155-48336174 MsG0480020788.01.T01:intron 35.0%
!! GGTTGTTGGTGTTAAATTCA+TGG + Chr4:48333309-48333328 MsG0480020788.01.T01:CDS 35.0%
!! TGATTCTGTGGTGTTTTTGA+GGG + Chr4:48333696-48333715 MsG0480020788.01.T01:CDS 35.0%
!! TTCACCACTGATTCTTTGTA+AGG + Chr4:48333288-48333307 MsG0480020788.01.T01:CDS 35.0%
AAAGGGCTGAAATGAATGAC+TGG - Chr4:48334896-48334915 None:intergenic 40.0%
AAATTGGTGAAGAACCCTTC+AGG + Chr4:48335655-48335674 MsG0480020788.01.T01:CDS 40.0%
AATGCTCCTGCATGTATACA+GGG + Chr4:48335043-48335062 MsG0480020788.01.T01:CDS 40.0%
ACAGGTTCTGTGAAGCAAAT+TGG + Chr4:48335639-48335658 MsG0480020788.01.T01:CDS 40.0%
ACCACCGTCTAACATATTCA+AGG - Chr4:48335718-48335737 None:intergenic 40.0%
ACTGCTATTGGATTAATGGG+GGG + Chr4:48335967-48335986 MsG0480020788.01.T01:intron 40.0%
ATACTAATTCGACCAACCAC+GGG - Chr4:48334865-48334884 None:intergenic 40.0%
ATATTATTGCCCAGATTGCG+GGG + Chr4:48334600-48334619 MsG0480020788.01.T01:intron 40.0%
ATCTGATGCAAACAATGGTG+GGG + Chr4:48333471-48333490 MsG0480020788.01.T01:CDS 40.0%
ATGAGGATTCAATGGTGTTC+TGG + Chr4:48334057-48334076 MsG0480020788.01.T01:CDS 40.0%
CAATCTGATGCAAACAATGG+TGG + Chr4:48333469-48333488 MsG0480020788.01.T01:CDS 40.0%
CAGGCATGATAAGCTTTCTT+TGG - Chr4:48335223-48335242 None:intergenic 40.0%
CATTGCTAGTCGTGATATTG+TGG + Chr4:48334514-48334533 MsG0480020788.01.T01:intron 40.0%
CCTACTACTACAGGTTACAT+GGG + Chr4:48334802-48334821 MsG0480020788.01.T01:intron 40.0%
CGGTCCTTGAATATGTTAGA+CGG + Chr4:48335711-48335730 MsG0480020788.01.T01:intron 40.0%
CTAATGCTGCTGAGTTTAGT+TGG + Chr4:48335445-48335464 MsG0480020788.01.T01:CDS 40.0%
CTCTGGTGTTTGTGGTTATA+TGG + Chr4:48334327-48334346 MsG0480020788.01.T01:intron 40.0%
GAGAATGGTGAATTGTGTGT+TGG + Chr4:48333721-48333740 MsG0480020788.01.T01:CDS 40.0%
GATACTAATTCGACCAACCA+CGG - Chr4:48334866-48334885 None:intergenic 40.0%
GATATTATTGCCCAGATTGC+GGG + Chr4:48334599-48334618 MsG0480020788.01.T01:intron 40.0%
GCAAAAACCTCATCAGTTTC+AGG - Chr4:48333340-48333359 None:intergenic 40.0%
GGAATTCGTAGGGCAAAAAA+GGG + Chr4:48333742-48333761 MsG0480020788.01.T01:CDS 40.0%
GTTTAGTTGGCAACTTGGAT+TGG + Chr4:48335458-48335477 MsG0480020788.01.T01:CDS 40.0%
TAAATGTGGGGTCCAAATCT+TGG - Chr4:48336532-48336551 None:intergenic 40.0%
TCACAAAGGTGAACATGGAT+TGG + Chr4:48336195-48336214 MsG0480020788.01.T01:CDS 40.0%
TCAGAGCTTGGTTATGATGA+AGG + Chr4:48333388-48333407 MsG0480020788.01.T01:CDS 40.0%
TCCTTGAATATGTTAGACGG+TGG + Chr4:48335714-48335733 MsG0480020788.01.T01:intron 40.0%
TCTAACATATTCAAGGACCG+AGG - Chr4:48335711-48335730 None:intergenic 40.0%
TGAAGCCTTAACACAGAACT+CGG - Chr4:48334022-48334041 None:intergenic 40.0%
TGAGGATTCAATGGTGTTCT+GGG + Chr4:48334058-48334077 MsG0480020788.01.T01:CDS 40.0%
TGGAATTCGTAGGGCAAAAA+AGG + Chr4:48333741-48333760 MsG0480020788.01.T01:CDS 40.0%
TGGATAACAGGAACTCACAA+AGG + Chr4:48336181-48336200 MsG0480020788.01.T01:CDS 40.0%
TTCTTGGAGTCAGAAGATGT+TGG + Chr4:48335501-48335520 MsG0480020788.01.T01:CDS 40.0%
! TGGCAACTTGGATTGGATAT+TGG + Chr4:48335465-48335484 MsG0480020788.01.T01:CDS 40.0%
! TGGTCATTGCAAGGTTTTCT+TGG + Chr4:48335485-48335504 MsG0480020788.01.T01:CDS 40.0%
! TTGATGGTTCATCTTGTGGA+TGG + Chr4:48333779-48333798 MsG0480020788.01.T01:CDS 40.0%
!! GGAAAGTGAGAAAGGGTATT+TGG + Chr4:48333138-48333157 MsG0480020788.01.T01:CDS 40.0%
!! GGTTTTGATGGTTCATCTTG+TGG + Chr4:48333775-48333794 MsG0480020788.01.T01:CDS 40.0%
!! GTGATTCTGTGGTGTTTTTG+AGG + Chr4:48333695-48333714 MsG0480020788.01.T01:CDS 40.0%
!! TATCTTTGAGATCGCAACTG+AGG - Chr4:48334568-48334587 None:intergenic 40.0%
!! TCAAGGTGCTGAATGTTAGT+AGG - Chr4:48335147-48335166 None:intergenic 40.0%
!!! CTTGATTGTTTTTCAGGGCA+TGG + Chr4:48336161-48336180 MsG0480020788.01.T01:intron 40.0%
!!! GTTTTTTACCGTGATGCAAC+AGG + Chr4:48335621-48335640 MsG0480020788.01.T01:CDS 40.0%
!!! TTTTTCAGGGCATGGATAAC+AGG + Chr4:48336169-48336188 MsG0480020788.01.T01:intron 40.0%
AAAAAGTTCACCCCGCAATC+TGG - Chr4:48334613-48334632 None:intergenic 45.0%
AAAAGTTCACCCCGCAATCT+GGG - Chr4:48334612-48334631 None:intergenic 45.0%
AAACCAAAGAAGGGGCTGTT+TGG - Chr4:48335016-48335035 None:intergenic 45.0%
AGCACCTTGATGTGCATAGT+AGG + Chr4:48335157-48335176 MsG0480020788.01.T01:intron 45.0%
AGCTCAATTGTCATACTGCG+AGG + Chr4:48334475-48334494 MsG0480020788.01.T01:intron 45.0%
AGGCTGCTATGAGGATTCAA+TGG + Chr4:48334049-48334068 MsG0480020788.01.T01:CDS 45.0%
ATGGTCATCTCTGGTGTTTG+TGG + Chr4:48334319-48334338 MsG0480020788.01.T01:intron 45.0%
CAATGCTCCTGCATGTATAC+AGG + Chr4:48335042-48335061 MsG0480020788.01.T01:CDS 45.0%
CAGGCAGCAAAAATGTGAGA+GGG + Chr4:48336053-48336072 MsG0480020788.01.T01:CDS 45.0%
CCCATGTAACCTGTAGTAGT+AGG - Chr4:48334805-48334824 None:intergenic 45.0%
CGTAGGGCAAAAAAGGGAAT+CGG + Chr4:48333748-48333767 MsG0480020788.01.T01:CDS 45.0%
CTTGGTTATGATGAAGGTGG+TGG + Chr4:48333394-48333413 MsG0480020788.01.T01:CDS 45.0%
GAAGCCTTAACACAGAACTC+GGG - Chr4:48334021-48334040 None:intergenic 45.0%
GAGCTTGGTTATGATGAAGG+TGG + Chr4:48333391-48333410 MsG0480020788.01.T01:CDS 45.0%
GCCTACTACTACAGGTTACA+TGG + Chr4:48334801-48334820 MsG0480020788.01.T01:intron 45.0%
GCTGAGTTTAGTTGGCAACT+TGG + Chr4:48335453-48335472 MsG0480020788.01.T01:CDS 45.0%
GGAACTCACAAAGGTGAACA+TGG + Chr4:48336190-48336209 MsG0480020788.01.T01:CDS 45.0%
GGGAACAATTGCTTCTGTTC+AGG + Chr4:48334137-48334156 MsG0480020788.01.T01:CDS 45.0%
GGTATTTGGATCCACAGCTA+TGG + Chr4:48333152-48333171 MsG0480020788.01.T01:CDS 45.0%
TCACAGAACCTGTTGCATCA+CGG - Chr4:48335632-48335651 None:intergenic 45.0%
TCAGGCAGCAAAAATGTGAG+AGG + Chr4:48336052-48336071 MsG0480020788.01.T01:CDS 45.0%
TCTGATGCAAACAATGGTGG+GGG + Chr4:48333472-48333491 MsG0480020788.01.T01:CDS 45.0%
TCTTCCTTGGTGGAGTGAAA+GGG - Chr4:48334913-48334932 None:intergenic 45.0%
TGACGGAAACTGAACATCGA+GGG - Chr4:48334966-48334985 None:intergenic 45.0%
TGGAGTCAGAAGATGTTGGA+AGG + Chr4:48335505-48335524 MsG0480020788.01.T01:CDS 45.0%
TGTTAAGGCTTCAGCTGTGA+AGG + Chr4:48334029-48334048 MsG0480020788.01.T01:intron 45.0%
TTCTTCCTTGGTGGAGTGAA+AGG - Chr4:48334914-48334933 None:intergenic 45.0%
! CCTTTGAGGAATTCAGAGCT+TGG + Chr4:48333376-48333395 MsG0480020788.01.T01:CDS 45.0%
! GATGCATTTTCAGCTGGGAA+AGG + Chr4:48335420-48335439 MsG0480020788.01.T01:CDS 45.0%
! TATGATGAAGGTGGTGGTGA+TGG + Chr4:48333400-48333419 MsG0480020788.01.T01:CDS 45.0%
! TCATCTTGTGGATGGACTTC+AGG + Chr4:48333787-48333806 MsG0480020788.01.T01:CDS 45.0%
!! AACCAGAAGAAGCTTGTTGC+TGG + Chr4:48333673-48333692 MsG0480020788.01.T01:CDS 45.0%
!! ACGGTGAGCTTTGGAAGTTT+AGG + Chr4:48333590-48333609 MsG0480020788.01.T01:CDS 45.0%
!! CCAAGCTCTGAATTCCTCAA+AGG - Chr4:48333379-48333398 None:intergenic 45.0%
!! GTGTTTTTGAGGGCTGAGAA+TGG + Chr4:48333706-48333725 MsG0480020788.01.T01:CDS 45.0%
!! TTCAATGGTGTTCTGGGATG+AGG + Chr4:48334064-48334083 MsG0480020788.01.T01:CDS 45.0%
ACCCTGTTGTAAGCAAGTGC+CGG - Chr4:48333639-48333658 None:intergenic 50.0%
ACGGAAACTGAACATCGAGG+GGG - Chr4:48334964-48334983 None:intergenic 50.0%
AGCTGGTTGCCTGAAAACGT+CGG - Chr4:48334989-48335008 None:intergenic 50.0%
AGGGCAAAAAAGGGAATCGG+TGG + Chr4:48333751-48333770 MsG0480020788.01.T01:CDS 50.0%
ATCGTCTCAGCACAGTACCT+TGG - Chr4:48333508-48333527 None:intergenic 50.0%
CACCAGCAACAAGCTTCTTC+TGG - Chr4:48333678-48333697 None:intergenic 50.0%
CACTCCCGAGTTCTGTGTTA+AGG + Chr4:48334014-48334033 MsG0480020788.01.T01:intron 50.0%
CAGGTTGTTGATCCTATCGC+TGG + Chr4:48334156-48334175 MsG0480020788.01.T01:intron 50.0%
CTTTCCGAGGCTTGATTACG+CGG + Chr4:48333528-48333547 MsG0480020788.01.T01:CDS 50.0%
GACGGAAACTGAACATCGAG+GGG - Chr4:48334965-48334984 None:intergenic 50.0%
GAGTGAGGGCTGAAGATGTT+TGG + Chr4:48333931-48333950 MsG0480020788.01.T01:intron 50.0%
GAGTGGAAGAGTGAGAGTGA+GGG + Chr4:48333917-48333936 MsG0480020788.01.T01:intron 50.0%
GCAAAAAAGGGAATCGGTGG+TGG + Chr4:48333754-48333773 MsG0480020788.01.T01:CDS 50.0%
GCATGTTCAGCATGTCCTTG+TGG - Chr4:48333238-48333257 None:intergenic 50.0%
TCCTCCAAATTGAGCATGCC+TGG - Chr4:48335071-48335090 None:intergenic 50.0%
TGAGTGGAAGAGTGAGAGTG+AGG + Chr4:48333916-48333935 MsG0480020788.01.T01:intron 50.0%
TTGCCTGAAAACGTCGGTGA+CGG - Chr4:48334983-48335002 None:intergenic 50.0%
! CTGATGCAAACAATGGTGGG+GGG + Chr4:48333473-48333492 MsG0480020788.01.T01:CDS 50.0%
! GCTTGTTGCTGGTGATTCTG+TGG + Chr4:48333684-48333703 MsG0480020788.01.T01:CDS 50.0%
! GTGACGGAAACTGAACATCG+AGG - Chr4:48334967-48334986 None:intergenic 50.0%
! TGTGGATGGACTTCAGGTTC+AGG + Chr4:48333793-48333812 MsG0480020788.01.T01:CDS 50.0%
! TTTCCGTCACCGACGTTTTC+AGG + Chr4:48334977-48334996 MsG0480020788.01.T01:CDS 50.0%
!! AATACCTGAAGAAGGCGCCA+CGG - Chr4:48334191-48334210 None:intergenic 50.0%
!! ACGTTTTCAGGCAACCAGCT+CGG + Chr4:48334989-48335008 MsG0480020788.01.T01:CDS 50.0%
!! TGAAGGTGGTGGTGATGGTT+TGG + Chr4:48333405-48333424 MsG0480020788.01.T01:CDS 50.0%
!!! GGAATCGGTGGTGGTTTTGA+TGG + Chr4:48333763-48333782 MsG0480020788.01.T01:CDS 50.0%
AACCGCAGCTTCTTCCTTGG+TGG - Chr4:48334923-48334942 None:intergenic 55.0%
AGGATGTGCACGGTGAGCTT+TGG + Chr4:48333581-48333600 MsG0480020788.01.T01:CDS 55.0%
CAGCTATGGCATGCTTGTGC+TGG + Chr4:48333166-48333185 MsG0480020788.01.T01:CDS 55.0%
CAGCTGTGAAGGCTGCTATG+AGG + Chr4:48334040-48334059 MsG0480020788.01.T01:CDS 55.0%
CGGAGAATTAGGCCAGCGAT+AGG - Chr4:48334171-48334190 None:intergenic 55.0%
CTATGGCATGCTTGTGCTGG+TGG + Chr4:48333169-48333188 MsG0480020788.01.T01:CDS 55.0%
CTCCACCAAGGAAGAAGCTG+CGG + Chr4:48334918-48334937 MsG0480020788.01.T01:CDS 55.0%
CTGCATGTATACAGGGAGCC+AGG + Chr4:48335050-48335069 MsG0480020788.01.T01:CDS 55.0%
CTGGCTCCCTGTATACATGC+AGG - Chr4:48335052-48335071 None:intergenic 55.0%
GCACAAGCATGCCATAGCTG+TGG - Chr4:48333166-48333185 None:intergenic 55.0%
GCCAGGCATGCTCAATTTGG+AGG + Chr4:48335067-48335086 MsG0480020788.01.T01:CDS 55.0%
GCCGGCACTTGCTTACAACA+GGG + Chr4:48333635-48333654 MsG0480020788.01.T01:CDS 55.0%
GGAAACCGCAGCTTCTTCCT+TGG - Chr4:48334926-48334945 None:intergenic 55.0%
GGAGCCAGGCATGCTCAATT+TGG + Chr4:48335064-48335083 MsG0480020788.01.T01:CDS 55.0%
GGCACTTGCTTACAACAGGG+TGG + Chr4:48333638-48333657 MsG0480020788.01.T01:CDS 55.0%
GGCTGACCCTGAAACTGATG+AGG + Chr4:48333330-48333349 MsG0480020788.01.T01:CDS 55.0%
GTGCTGAGACGATCTTTCCG+AGG + Chr4:48333515-48333534 MsG0480020788.01.T01:CDS 55.0%
TCAGCCCTTTCACTCCACCA+AGG + Chr4:48334906-48334925 MsG0480020788.01.T01:CDS 55.0%
TCAGCCGCGTAATCAAGCCT+CGG - Chr4:48333535-48333554 None:intergenic 55.0%
TTTATAGAGGGACACCGCGC+CGG + Chr4:48333617-48333636 MsG0480020788.01.T01:CDS 55.0%
! ATCGCTGGCCTAATTCTCCG+TGG + Chr4:48334171-48334190 MsG0480020788.01.T01:intron 55.0%
! GCATGCTTGTGCTGGTGGAA+TGG + Chr4:48333174-48333193 MsG0480020788.01.T01:CDS 55.0%
! GTGGGGGGTTTTCTGTTCCA+AGG + Chr4:48333488-48333507 MsG0480020788.01.T01:CDS 55.0%
!! AACTCGGGAGTGCTTGCTCT+TGG - Chr4:48334006-48334025 None:intergenic 55.0%
!! AGAAGGCGCCACGGAGAATT+AGG - Chr4:48334182-48334201 None:intergenic 55.0%
!! CGTTTTCAGGCAACCAGCTC+GGG + Chr4:48334990-48335009 MsG0480020788.01.T01:CDS 55.0%
ACGTGAAGCGTGTTAGCCCG+TGG + Chr4:48334846-48334865 MsG0480020788.01.T01:CDS 60.0%
AGGGGGAAGTCGAGGTTTGG+TGG - Chr4:48334947-48334966 None:intergenic 60.0%
CGCCGGCACTTGCTTACAAC+AGG + Chr4:48333634-48333653 MsG0480020788.01.T01:CDS 60.0%
GAACATCGAGGGGGAAGTCG+AGG - Chr4:48334955-48334974 None:intergenic 60.0%
GAAGCGTGTTAGCCCGTGGT+TGG + Chr4:48334850-48334869 MsG0480020788.01.T01:CDS 60.0%
GGGCCAAACAGCCCCTTCTT+TGG + Chr4:48335010-48335029 MsG0480020788.01.T01:CDS 60.0%
TCGAGGGGGAAGTCGAGGTT+TGG - Chr4:48334950-48334969 None:intergenic 60.0%
TTCGCCACCACCGTCTGAAC+AGG - Chr4:48333562-48333581 None:intergenic 60.0%
TTCTCCGTGGCGCCTTCTTC+AGG + Chr4:48334184-48334203 MsG0480020788.01.T01:intron 60.0%
! GTGGTGGCGAAGGATGTGCA+CGG + Chr4:48333571-48333590 MsG0480020788.01.T01:CDS 60.0%
! TGTTCAGACGGTGGTGGCGA+AGG + Chr4:48333561-48333580 MsG0480020788.01.T01:CDS 60.0%
!! GTTGTAAGCAAGTGCCGGCG+CGG - Chr4:48333634-48333653 None:intergenic 60.0%
GCCACCACCGTCTGAACAGG+CGG - Chr4:48333559-48333578 None:intergenic 65.0%
GGCTGAGCCGCCTGTTCAGA+CGG + Chr4:48333549-48333568 MsG0480020788.01.T01:CDS 65.0%
TGAGCCGCCTGTTCAGACGG+TGG + Chr4:48333552-48333571 MsG0480020788.01.T01:CDS 65.0%
AGGGGCTGTTTGGCCCGAGC+TGG - Chr4:48335006-48335025 None:intergenic 70.0%
GCCGCCTGTTCAGACGGTGG+TGG + Chr4:48333555-48333574 MsG0480020788.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 48333133 48336587 48333133 ID=MsG0480020788.01;Name=MsG0480020788.01
Chr4 mRNA 48333133 48336587 48333133 ID=MsG0480020788.01.T01;Parent=MsG0480020788.01;Name=MsG0480020788.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0.4|0.33|1|1|1|6|344|550
Chr4 exon 48333133 48333909 48333133 ID=MsG0480020788.01.T01:exon:8406;Parent=MsG0480020788.01.T01
Chr4 exon 48334036 48334158 48334036 ID=MsG0480020788.01.T01:exon:8407;Parent=MsG0480020788.01.T01
Chr4 exon 48334815 48335130 48334815 ID=MsG0480020788.01.T01:exon:8408;Parent=MsG0480020788.01.T01
Chr4 exon 48335373 48335676 48335373 ID=MsG0480020788.01.T01:exon:8409;Parent=MsG0480020788.01.T01
Chr4 exon 48336009 48336074 48336009 ID=MsG0480020788.01.T01:exon:8410;Parent=MsG0480020788.01.T01
Chr4 exon 48336177 48336587 48336177 ID=MsG0480020788.01.T01:exon:8411;Parent=MsG0480020788.01.T01
Chr4 CDS 48333133 48333909 48333133 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 CDS 48334036 48334158 48334036 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 CDS 48334815 48335130 48334815 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 CDS 48335373 48335676 48335373 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 CDS 48336009 48336074 48336009 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 CDS 48336177 48336243 48336177 ID=MsG0480020788.01.T01:cds;Parent=MsG0480020788.01.T01
Chr4 three_prime_UTR 48336244 48336587 48336244 ID=MsG0480020788.01.T01:three_prime_utr;Parent=MsG0480020788.01.T01
Gene Sequence

>MsG0480020788.01.T01

ATGAAGGAAAGTGAGAAAGGGTATTTGGATCCACAGCTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATACCTCAAGTGAACTCCAAAGTTTTCTACTTTCCACAAGGACATGCTGAACATGCTAATACAAACATTGATCTAAGGGTTTCAGTTTCACCACTGATTCTTTGTAAGGTTGTTGGTGTTAAATTCATGGCTGACCCTGAAACTGATGAGGTTTTTGCTGTAATGAAGCTTCTTCCTTTGAGGAATTCAGAGCTTGGTTATGATGAAGGTGGTGGTGATGGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAACAATGGTGGGGGGTTTTCTGTTCCAAGGTACTGTGCTGAGACGATCTTTCCGAGGCTTGATTACGCGGCTGAGCCGCCTGTTCAGACGGTGGTGGCGAAGGATGTGCACGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACACCGCGCCGGCACTTGCTTACAACAGGGTGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGTAGGGCAAAAAAGGGAATCGGTGGTGGTTTTGATGGTTCATCTTGTGGATGGACTTCAGGTTCAGGTTCTAACAATGTAAATTGTGGAATTGGACCTTTTGGAGCATTTTCTTTTTTCTTGAAAGAAGAGAATAAGACATTGAGAAATGTTGTTTTGATGGCTTCAGCTGTGAAGGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAAGACTCTTCTAGGATTAGTTGGTTTATGGGAACAATTGCTTCTGTTCAGGTTACATGGGATGAGCCTGATTTACTACAAAACGTGAAGCGTGTTAGCCCGTGGTTGGTCGAATTAGTATCAAATGTACCAGTCATTCATTTCAGCCCTTTCACTCCACCAAGGAAGAAGCTGCGGTTTCCACCAAACCTCGACTTCCCCCTCGATGTTCAGTTTCCGTCACCGACGTTTTCAGGCAACCAGCTCGGGCCAAACAGCCCCTTCTTTGGTTTATCTGACAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATTTCAACCTTACAACAATAAACTTCAAAAAAAATTCAGTAGATGATAGTAAAGACAAAGAGAAGTGGTTTTTGGATGCATTTTCAGCTGGGAAAGGTTCTAATGCTGCTGAGTTTAGTTGGCAACTTGGATTGGATATTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCCTTGATTTATCACTTCTTGGTTCTTATGAAGAGCTCTACAAGAAACTTGCTAACATGTTTGATTTAGAAAAGGCTGAGATGTTGAATCATGTTTTTTACCGTGATGCAACAGGTTCTGTGAAGCAAATTGGTGAAGAACCCTTCAGTGAATTCATGAAGACAGCTAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTGAGAGGGGCATGGATAACAGGAACTCACAAAGGTGAACATGGATTGGATGCATCAAACAAAACAGACCTCTAA

Protein sequence

>MsG0480020788.01.T01

MKESEKGYLDPQLWHACAGGMVQIPQVNSKVFYFPQGHAEHANTNIDLRVSVSPLILCKVVGVKFMADPETDEVFAVMKLLPLRNSELGYDEGGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGFDGSSCGWTSGSGSNNVNCGIGPFGAFSFFLKEENKTLRNVVLMASAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPPNLDFPLDVQFPSPTFSGNQLGPNSPFFGLSDNAPACIQGARHAQFGGISLSDFNLTTINFKKNSVDDSKDKEKWFLDAFSAGKGSNAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKAEMLNHVFYRDATGSVKQIGEEPFSEFMKTAKRLTILTDSGSKNVRGAWITGTHKGEHGLDASNKTDL*