AlfalfaGEDB | MsG0180002488.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002488.01

KEGG: -
GO: -
PFAM: PF13839

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002488.01.T01	XP_003609734.2	84.076	157	24	1	60	215	233	389	7.14E-86	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002488.01.T01	Q9FJ06	53.165	158	71	3	60	215	219	375	9.45E-47	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002488.01.T01	G7JMR6	84.076	157	24	1	60	215	233	389	3.41e-86	273

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000470.01	MsG0180002488.01	0.803644	3.159968e-49	1.596352e-46
MsG0180001063.01	MsG0180002488.01	0.811424	7.049096e-51	4.361998e-48
MsG0180002488.01	MsG0180003773.01	0.816709	4.808611e-52	3.432535e-49
MsG0180002488.01	MsG0180003952.01	0.812951	3.273213e-51	2.109408e-48
MsG0180002488.01	MsG0180004765.01	0.800332	1.514461e-48	7.033052e-46
MsG0180002488.01	MsG0280007241.01	0.805943	1.045649e-49	5.604500e-47
MsG0180002488.01	MsG0280011175.01	0.801425	9.057396e-49	4.324082e-46
MsG0180002488.01	MsG0380014251.01	0.807646	4.566689e-50	2.557269e-47
MsG0180002488.01	MsG0380017343.01	0.834375	3.109198e-56	3.682943e-53
MsG0180002488.01	MsG0480018372.01	0.878899	1.932485e-69	1.026436e-65

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002488.01.T01	MTR_4g121560	84.076	157	24	1	60	215	233	389	8.65e-90	273
MsG0180002488.01.T01	MTR_7g093450	47.771	157	80	2	60	215	366	521	2.71e-45	160
MsG0180002488.01.T01	MTR_0136s0010	45.860	157	83	2	60	215	288	443	2.44e-44	156
MsG0180002488.01.T01	MTR_5g059400	45.223	157	83	3	61	215	294	449	3.64e-43	153
MsG0180002488.01.T01	MTR_1g116130	45.223	157	83	3	61	215	294	449	3.64e-43	153
MsG0180002488.01.T01	MTR_8g069790	48.101	158	77	3	60	215	296	450	6.45e-43	152
MsG0180002488.01.T01	MTR_5g033800	45.912	159	83	2	60	217	263	419	5.32e-42	149
MsG0180002488.01.T01	MTR_4g126950	42.405	158	87	3	60	215	227	382	2.36e-35	131
MsG0180002488.01.T01	MTR_5g033800	51.402	107	50	1	60	166	263	367	3.16e-33	124
MsG0180002488.01.T01	MTR_7g029590	54.918	122	39	3	96	205	1	118	1.37e-31	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002488.01.T01	AT5G49340	53.165	158	71	3	60	215	219	375	9.63e-48	164
MsG0180002488.01.T01	AT3G12060	45.860	157	83	2	60	215	314	469	8.87e-45	158
MsG0180002488.01.T01	AT1G60790	50.625	160	76	3	60	218	310	467	7.71e-44	155
MsG0180002488.01.T01	AT5G06700	45.223	157	84	2	60	215	373	528	1.66e-43	155
MsG0180002488.01.T01	AT5G20590	39.490	157	93	2	60	215	260	415	6.92e-36	133
MsG0180002488.01.T01	AT3G62390	39.103	156	91	3	61	215	257	409	7.48e-32	122
MsG0180002488.01.T01	AT5G19160	35.172	145	93	1	60	203	217	361	8.71e-26	105
MsG0180002488.01.T01	AT5G20590	41.905	105	60	1	60	164	260	363	3.26e-25	102
MsG0180002488.01.T01	AT3G62390	40.351	114	66	1	61	174	257	368	1.69e-24	100
MsG0180002488.01.T01	AT5G58600	34.932	146	83	3	61	200	179	318	2.25e-22	95.1

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Find 60 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCTGGAGGTAAATGTGA+TGG	0.519732	1:-39027285	MsG0180002488.01.T01:CDS
AAGAGAATGTTTGATTACGA+GGG	0.573514	1:-39029756	None:intergenic
AAGATAGCTTTCATTTGTAA+TGG	0.380265	1:+39027251	None:intergenic
AAGCATGTGAAGAGACTATC+AGG	0.302447	1:-39026415	MsG0180002488.01.T01:CDS
ACAACAAGCATTTAAGACAT+GGG	0.616597	1:-39027493	MsG0180002488.01.T01:CDS
ACTAGAAGGTCATGTCAAAC+CGG	0.536714	1:-39029646	MsG0180002488.01.T01:intron
ACTCTGGAGGTAAATGTGAT+GGG	0.561757	1:-39027284	MsG0180002488.01.T01:CDS
ACTGCCCCTTCAGATTCATA+GGG	0.561633	1:+39028059	None:intergenic
AGAAGTGTTCTAGCACTAGA+AGG	0.473239	1:-39029660	MsG0180002488.01.T01:CDS
AGAGAATGTTTGATTACGAG+GGG	0.646816	1:-39029755	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGATGAGACATTATCAAT+CGG	-	Chr1:39028979-39028998	MsG0180002488.01.T01:intron	30.0%
AATGGATATTATTTAGCCAC+CGG	-	Chr1:39026606-39026625	MsG0180002488.01.T01:intron	30.0%
ACCTAACATACTTCCTATAA+TGG	+	Chr1:39028934-39028953	None:intergenic	30.0%
AGCATCATAATATTGAGACT+TGG	+	Chr1:39028392-39028411	None:intergenic	30.0%
ATATGTGTGTGATCCATTAT+AGG	-	Chr1:39028918-39028937	MsG0180002488.01.T01:intron	30.0%
CTAGGTAGAAAGAAATAGAA+AGG	+	Chr1:39029557-39029576	None:intergenic	30.0%
GATGTGTTGTGATGTTAATT+AGG	-	Chr1:39028249-39028268	MsG0180002488.01.T01:intron	30.0%
GTGGCTAAATAATATCCATT+AGG	+	Chr1:39026606-39026625	None:intergenic	30.0%
TAATATAACAGGGACAATGT+CGG	-	Chr1:39028168-39028187	MsG0180002488.01.T01:intron	30.0%
TCAACAGGTAAAAAAAAAGC+TGG	+	Chr1:39029166-39029185	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	39026357	39029772	39026357	ID=MsG0180002488.01;Name=MsG0180002488.01
Chr1	mRNA	39026357	39029772	39026357	ID=MsG0180002488.01.T01;Parent=MsG0180002488.01;Name=MsG0180002488.01.T01;_AED=0.50;_eAED=0.64;_QI=0\|0.4\|0.33\|1\|1\|1\|6\|0\|245
Chr1	exon	39029647	39029772	39029647	ID=MsG0180002488.01.T01:exon:12452;Parent=MsG0180002488.01.T01
Chr1	exon	39028033	39028086	39028033	ID=MsG0180002488.01.T01:exon:12453;Parent=MsG0180002488.01.T01
Chr1	exon	39027662	39027858	39027662	ID=MsG0180002488.01.T01:exon:12454;Parent=MsG0180002488.01.T01
Chr1	exon	39027448	39027575	39027448	ID=MsG0180002488.01.T01:exon:12455;Parent=MsG0180002488.01.T01
Chr1	exon	39027208	39027348	39027208	ID=MsG0180002488.01.T01:exon:12456;Parent=MsG0180002488.01.T01
Chr1	exon	39026357	39026448	39026357	ID=MsG0180002488.01.T01:exon:12457;Parent=MsG0180002488.01.T01
Chr1	CDS	39029647	39029772	39029647	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01
Chr1	CDS	39028033	39028086	39028033	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01
Chr1	CDS	39027662	39027858	39027662	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01
Chr1	CDS	39027448	39027575	39027448	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01
Chr1	CDS	39027208	39027348	39027208	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01
Chr1	CDS	39026357	39026448	39026357	ID=MsG0180002488.01.T01:cds;Parent=MsG0180002488.01.T01

Gene Sequence

>MsG0180002488.01.T01

ATGTTTGATTACGAGGGGTGTTTCTTTGGAGTGAGTAGCGGCGATGGGTGGTTATGGATTTCGTTTCAGGTATGGGACCTTCGAACTGATAGAAGTGTTCTAGCACTAGAAGGTCATGTCAAACCGGCAAACCCTATGAATCTGAAGGGGCAGTGTCATGAGCTTCTTGCTGCTAAGCAGGATTATGGATGCTCCATAGACATTGTGAAATCCCCATTTCTTGTACAAGAATGGAAAGTGTCACGTAACGATGAAGTTCCTCAAAGAGAAACTCTTAGGCTTGATATGATTCAAGCTTCCAAGTCTCAATATTATGATGCTGATATAATCATTTTCAACACAGGATACTGGTGGAATCATGAAAAGACAAAAAATGGTAGAAACTATTTTCAGCAAGGTAATCATGTCTATGACAGATTAGAAGTTTCTGAAGCATTACAACAAGCATTTAAGACATGGGCTAAGTGGGTTGATTCCACAGTTGATAGCAAGCACACGTACAAGGTAATTGATTCTATGGCTGAAATTTGCAGAGGGGGGCAGGGGAACTCTGGAGGTAAATGTGATGGGGAGAGACAACCCATTACAAATGAAAGCTATCTTGCAGCATATCCATTGACAATGGGAATTGTCGAAGATGTTATATGCCGGGACTTTAAGCATGTGAAGAGACTATCAGGGCATGAAGATAGAGTTAGTTCCGTGGATGTTCTTGGAGGTAGGATTTCTACCTTATAA

Protein sequence

>MsG0180002488.01.T01

MFDYEGCFFGVSSGDGWLWISFQVWDLRTDRSVLALEGHVKPANPMNLKGQCHELLAAKQDYGCSIDIVKSPFLVQEWKVSRNDEVPQRETLRLDMIQASKSQYYDADIIIFNTGYWWNHEKTKNGRNYFQQGNHVYDRLEVSEALQQAFKTWAKWVDSTVDSKHTYKVIDSMAEICRGGQGNSGGKCDGERQPITNESYLAAYPLTMGIVEDVICRDFKHVKRLSGHEDRVSSVDVLGGRISTL*