AlfalfaGEDB | MsG0280007241.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007241.01

KEGG: K12737
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007241.01.T01	XP_024632468.2	97.826	92	2	0	1	92	408	499	1.05E-54	187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007241.01.T01	Q6Q152	58.416	101	33	2	1	92	404	504	1.06E-29	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007241.01.T01	A0A396J5D4	97.826	92	2	0	1	92	408	499	5.04e-55	187

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0280007241.01	0.821938	3.094398e-53	2.553211e-50
MsG0080048964.01	MsG0280007241.01	0.805891	1.072248e-49	5.739254e-47
MsG0180000470.01	MsG0280007241.01	0.805892	1.071668e-49	5.736299e-47
MsG0180002488.01	MsG0280007241.01	0.805943	1.045649e-49	5.604500e-47
MsG0180003673.01	MsG0280007241.01	0.808182	3.511483e-50	1.994396e-47
MsG0180003686.01	MsG0280007241.01	0.809437	1.893469e-50	1.111664e-47
MsG0180003952.01	MsG0280007241.01	0.819629	1.050305e-52	8.125301e-50
MsG0180004295.01	MsG0280007241.01	0.808747	2.659914e-50	1.533168e-47
MsG0180004422.01	MsG0280007241.01	0.810075	1.380234e-50	8.241050e-48
MsG0180004465.01	MsG0280007241.01	0.800423	1.451604e-48	6.756682e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007241.01.T01	MTR_2g023120	90.476	42	4	0	1	42	408	449	4.05e-18	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007241.01.T01	AT4G33060	58.416	101	33	2	1	92	404	504	1.08e-30	112

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Find 23 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGACCTTGCCAACTC+CGG	0.499053	2:-12441893	None:intergenic
AAAAGAGACGAGAACGGGAA+TGG	0.518777	2:+12442297	MsG0280007241.01.T01:CDS
AAACTGACCTTGCCAACTCC+GGG	0.447636	2:-12441892	None:intergenic
AAAGAGACGAGAACGGGAAT+GGG	0.523623	2:+12442298	MsG0280007241.01.T01:CDS
AACTAAACATGCTAGTGACG+AGG	0.668903	2:+12441831	MsG0280007241.01.T01:CDS
AACTGACCTTGCCAACTCCG+GGG	0.637540	2:-12441891	None:intergenic
ACACCAGCAGAATCAAGTAA+GGG	0.677787	2:-12442330	None:intergenic
ACTGACCTTGCCAACTCCGG+GGG	0.609005	2:-12441890	None:intergenic
ACTTGAGAAGTTTAAAACCA+AGG	0.622239	2:+12441777	MsG0280007241.01.T01:CDS
AGACGAGAACGGGAATGGGC+TGG	0.448205	2:+12442302	MsG0280007241.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAACATGCTAGTGACG+AGG	+	Chr2:12441831-12441850	MsG0280007241.01.T01:CDS	40.0%
AACTAACGTGTCTCCACATT+TGG	-	Chr2:12442022-12442041	None:intergenic	40.0%
CAAACAAAAGAGACGAGAAC+GGG	+	Chr2:12442292-12442311	MsG0280007241.01.T01:CDS	40.0%
CCAAACAAAAGAGACGAGAA+CGG	+	Chr2:12442291-12442310	MsG0280007241.01.T01:CDS	40.0%
TTTAGACGGAGTTGTTCGTA+TGG	+	Chr2:12442120-12442139	MsG0280007241.01.T01:intron	40.0%
AAAACTGACCTTGCCAACTC+CGG	-	Chr2:12441896-12441915	None:intergenic	45.0%
AAAAGAGACGAGAACGGGAA+TGG	+	Chr2:12442297-12442316	MsG0280007241.01.T01:CDS	45.0%
AAAGAGACGAGAACGGGAAT+GGG	+	Chr2:12442298-12442317	MsG0280007241.01.T01:CDS	45.0%
AACTCCGGGGGAAAATTTCA+AGG	-	Chr2:12441881-12441900	None:intergenic	45.0%
GTGACGAGGAATTAACTGAC+TGG	+	Chr2:12441845-12441864	MsG0280007241.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	12441769	12442340	12441769	ID=MsG0280007241.01;Name=MsG0280007241.01
Chr2	mRNA	12441769	12442340	12441769	ID=MsG0280007241.01.T01;Parent=MsG0280007241.01;Name=MsG0280007241.01.T01;_AED=0.50;_eAED=1.00;_QI=0\|0\|0\|1\|0\|0\|2\|0\|92
Chr2	exon	12441769	12441906	12441769	ID=MsG0280007241.01.T01:exon:2934;Parent=MsG0280007241.01.T01
Chr2	exon	12442200	12442340	12442200	ID=MsG0280007241.01.T01:exon:2935;Parent=MsG0280007241.01.T01
Chr2	CDS	12441769	12441906	12441769	ID=MsG0280007241.01.T01:cds;Parent=MsG0280007241.01.T01
Chr2	CDS	12442200	12442340	12442200	ID=MsG0280007241.01.T01:cds;Parent=MsG0280007241.01.T01

Gene Sequence	>MsG0280007241.01.T01 TTGGCAAAACTTGAGAAGTTTAAAACCAAGGTATCAGCAAAGGAGACACCCACAACTGTTGAAACTAAACATGCTAGTGACGAGGAATTAACTGACTGGAGTAGTGTTACCTTGAAATTTTCCCCCGGAGTTGGCAAGGACCACATGTCTCGCAAAGAGGATCCAAATGATTATGTTGTACATGACCCACTTTTGGAAAAGGGGAAAGAGAAGTTTAATAAGATGCAAGCCAAACAAAAGAGACGAGAACGGGAATGGGCTGGGAGATCCCTTACTTGA
Protein sequence	>MsG0280007241.01.T01 LAKLEKFKTKVSAKETPTTVETKHASDEELTDWSSVTLKFSPGVGKDHMSRKEDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGRSLT*