Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000834.01.T02 | XP_003588461.2 | 76.339 | 224 | 0 | 2 | 23 | 223 | 94 | 287 | 1.05E-103 | 315 |
| MsG0180000834.01.T01 | PNX90025.1 | 74.713 | 87 | 20 | 2 | 4 | 90 | 1 | 85 | 1.81E-34 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000834.01.T01 | Q1H5E9 | 58.065 | 93 | 33 | 3 | 1 | 89 | 307 | 397 | 6.70E-24 | 95.9 |
| MsG0180000834.01.T02 | Q1H5E9 | 64.732 | 224 | 26 | 2 | 23 | 223 | 96 | 289 | 2.76E-88 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000834.01.T01 | A0A2K3MGW2 | 74.713 | 87 | 20 | 2 | 4 | 90 | 1 | 85 | 8.64e-35 | 123 |
| MsG0180000834.01.T02 | G7I294 | 76.339 | 224 | 0 | 2 | 23 | 223 | 94 | 287 | 5.00e-104 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048727.01 | MsG0180000834.01 | 0.816965 | 4.211937e-52 | 3.028169e-49 |
| MsG0080048748.01 | MsG0180000834.01 | 0.837329 | 5.544442e-57 | 7.177664e-54 |
| MsG0080048849.01 | MsG0180000834.01 | 0.804603 | 1.995147e-49 | 1.033101e-46 |
| MsG0080048993.01 | MsG0180000834.01 | 0.847102 | 1.430298e-59 | 2.515296e-56 |
| MsG0080049069.01 | MsG0180000834.01 | 0.823088 | 1.672040e-53 | 1.425609e-50 |
| MsG0080049070.01 | MsG0180000834.01 | 0.820438 | 6.859161e-53 | 5.427372e-50 |
| MsG0180000113.01 | MsG0180000834.01 | 0.833283 | 5.828669e-56 | 6.681308e-53 |
| MsG0180000489.01 | MsG0180000834.01 | 0.824622 | 7.303558e-54 | 6.504579e-51 |
| MsG0180000549.01 | MsG0180000834.01 | 0.827763 | 1.307208e-54 | 1.273895e-51 |
| MsG0180000833.01 | MsG0180000834.01 | 0.988950 | 4.524688e-176 | 2.746435e-169 |
| MsG0180000834.01 | MsG0180001548.01 | 0.841391 | 4.889411e-58 | 7.174041e-55 |
| MsG0180000834.01 | MsG0180001704.01 | 0.822048 | 2.918269e-53 | 2.415367e-50 |
| MsG0180000834.01 | MsG0180001722.01 | 0.872734 | 2.531934e-67 | 1.071199e-63 |
| MsG0180000834.01 | MsG0180001929.01 | 0.810595 | 1.065908e-50 | 6.452135e-48 |
| MsG0180000834.01 | MsG0180002700.01 | 0.863110 | 3.144758e-64 | 9.425961e-61 |
| MsG0180000834.01 | MsG0180003196.01 | 0.833547 | 5.009701e-56 | 5.788312e-53 |
| MsG0180000834.01 | MsG0180003404.01 | -0.845146 | 4.871368e-59 | 8.041693e-56 |
| MsG0180000834.01 | MsG0180004792.01 | 0.806025 | 1.005129e-49 | 5.398453e-47 |
| MsG0180000834.01 | MsG0180005339.01 | 0.807256 | 5.523560e-50 | 3.062044e-47 |
| MsG0180000834.01 | MsG0180005349.01 | 0.811158 | 8.052058e-51 | 4.947462e-48 |
| MsG0180000834.01 | MsG0180005395.01 | -0.802398 | 5.718914e-49 | 2.798639e-46 |
| MsG0180000834.01 | MsG0180005612.01 | 0.837778 | 4.253054e-57 | 5.583425e-54 |
| MsG0180000834.01 | MsG0180005964.01 | 0.832058 | 1.173495e-55 | 1.297042e-52 |
| MsG0180000834.01 | MsG0180006136.01 | 0.836667 | 8.180167e-57 | 1.037912e-53 |
| MsG0180000834.01 | MsG0180006217.01 | 0.842113 | 3.152674e-58 | 4.731771e-55 |
| MsG0180000834.01 | MsG0280006370.01 | 0.802749 | 4.840085e-49 | 2.389814e-46 |
| MsG0180000834.01 | MsG0280006571.01 | 0.824292 | 8.735999e-54 | 7.704946e-51 |
| MsG0180000834.01 | MsG0280006996.01 | 0.811182 | 7.955480e-51 | 4.891362e-48 |
| MsG0180000834.01 | MsG0280007647.01 | 0.853989 | 1.659377e-61 | 3.651758e-58 |
| MsG0180000834.01 | MsG0280007852.01 | 0.824017 | 1.013474e-53 | 8.869605e-51 |
| MsG0180000834.01 | MsG0280007853.01 | 0.817129 | 3.870065e-52 | 2.794582e-49 |
| MsG0180000834.01 | MsG0280008223.01 | 0.801897 | 7.247182e-49 | 3.501579e-46 |
| MsG0180000834.01 | MsG0280008451.01 | 0.824563 | 7.544151e-54 | 6.706762e-51 |
| MsG0180000834.01 | MsG0280008709.01 | 0.803989 | 2.679093e-49 | 1.365571e-46 |
| MsG0180000834.01 | MsG0280008928.01 | 0.811467 | 6.900620e-51 | 4.274806e-48 |
| MsG0180000834.01 | MsG0280009435.01 | 0.803793 | 2.942243e-49 | 1.492119e-46 |
| MsG0180000834.01 | MsG0280009436.01 | 0.811592 | 6.480794e-51 | 4.027856e-48 |
| MsG0180000834.01 | MsG0280009699.01 | 0.834514 | 2.868155e-56 | 3.411735e-53 |
| MsG0180000834.01 | MsG0280010353.01 | 0.800584 | 1.345879e-48 | 6.290027e-46 |
| MsG0180000834.01 | MsG0280011110.01 | -0.808913 | 2.452067e-50 | 1.419535e-47 |
| MsG0180000834.01 | MsG0280011180.01 | 0.847742 | 9.539740e-60 | 1.712139e-56 |
| MsG0180000834.01 | MsG0280011218.01 | 0.866582 | 2.566263e-65 | 8.693524e-62 |
| MsG0180000834.01 | MsG0380012868.01 | 0.856134 | 3.949981e-62 | 9.332532e-59 |
| MsG0180000834.01 | MsG0380014909.01 | 0.808488 | 3.021611e-50 | 1.729965e-47 |
| MsG0180000834.01 | MsG0380016057.01 | 0.844581 | 6.920792e-59 | 1.122373e-55 |
| MsG0180000834.01 | MsG0380016540.01 | 0.809211 | 2.116464e-50 | 1.235173e-47 |
| MsG0180000834.01 | MsG0380016764.01 | 0.803903 | 2.791185e-49 | 1.419578e-46 |
| MsG0180000834.01 | MsG0380017411.01 | -0.802308 | 5.966643e-49 | 2.913259e-46 |
| MsG0180000834.01 | MsG0380017427.01 | 0.839254 | 1.768783e-57 | 2.428770e-54 |
| MsG0180000834.01 | MsG0380018037.01 | 0.825797 | 3.853483e-54 | 3.548686e-51 |
| MsG0180000834.01 | MsG0380018061.01 | 0.818391 | 2.008432e-52 | 1.501521e-49 |
| MsG0180000834.01 | MsG0480018337.01 | 0.834317 | 3.214925e-56 | 3.801669e-53 |
| MsG0180000834.01 | MsG0480018426.01 | 0.812484 | 4.143126e-51 | 2.637561e-48 |
| MsG0180000834.01 | MsG0480018592.01 | 0.804736 | 1.872460e-49 | 9.729667e-47 |
| MsG0180000834.01 | MsG0480018644.01 | 0.809230 | 2.097144e-50 | 1.224524e-47 |
| MsG0180000834.01 | MsG0480018673.01 | 0.804037 | 2.617885e-49 | 1.335987e-46 |
| MsG0180000834.01 | MsG0480018676.01 | 0.841396 | 4.873816e-58 | 7.152611e-55 |
| MsG0180000834.01 | MsG0480018997.01 | 0.807226 | 5.604950e-50 | 3.104731e-47 |
| MsG0180000834.01 | MsG0480019812.01 | 0.810890 | 9.204820e-51 | 5.616172e-48 |
| MsG0180000834.01 | MsG0480020473.01 | 0.861424 | 1.035722e-63 | 2.929736e-60 |
| MsG0180000834.01 | MsG0480020501.01 | 0.830571 | 2.724451e-55 | 2.881493e-52 |
| MsG0180000834.01 | MsG0480020502.01 | 0.844354 | 7.965487e-59 | 1.282529e-55 |
| MsG0180000834.01 | MsG0480021038.01 | 0.817915 | 2.574540e-52 | 1.899569e-49 |
| MsG0180000834.01 | MsG0480021101.01 | 0.802275 | 6.060703e-49 | 2.956568e-46 |
| MsG0180000834.01 | MsG0480021201.01 | 0.802997 | 4.301312e-49 | 2.137079e-46 |
| MsG0180000834.01 | MsG0480021213.01 | 0.832278 | 1.035664e-55 | 1.151953e-52 |
| MsG0180000834.01 | MsG0480021248.01 | 0.844567 | 6.980900e-59 | 1.131668e-55 |
| MsG0180000834.01 | MsG0480021377.01 | 0.805736 | 1.156034e-49 | 6.163446e-47 |
| MsG0180000834.01 | MsG0480021783.01 | 0.803481 | 3.415475e-49 | 1.718290e-46 |
| MsG0180000834.01 | MsG0480022162.01 | 0.828682 | 7.847103e-55 | 7.855313e-52 |
| MsG0180000834.01 | MsG0480022647.01 | 0.801160 | 1.026224e-48 | 4.866825e-46 |
| MsG0180000834.01 | MsG0480023406.01 | 0.810402 | 1.173306e-50 | 7.065493e-48 |
| MsG0180000834.01 | MsG0480023452.01 | 0.804774 | 1.838071e-49 | 9.559932e-47 |
| MsG0180000834.01 | MsG0580024285.01 | 0.841851 | 3.697202e-58 | 5.503103e-55 |
| MsG0180000834.01 | MsG0580025132.01 | 0.811476 | 6.867658e-51 | 4.255522e-48 |
| MsG0180000834.01 | MsG0580025366.01 | 0.809664 | 1.692239e-50 | 9.995896e-48 |
| MsG0180000834.01 | MsG0580025627.01 | 0.823287 | 1.502572e-53 | 1.288203e-50 |
| MsG0180000834.01 | MsG0580025906.01 | 0.811482 | 6.848649e-51 | 4.244355e-48 |
| MsG0180000834.01 | MsG0580026498.01 | 0.802231 | 6.187926e-49 | 3.015197e-46 |
| MsG0180000834.01 | MsG0580027183.01 | 0.840945 | 6.403836e-58 | 9.266126e-55 |
| MsG0180000834.01 | MsG0580027189.01 | 0.851491 | 8.575650e-61 | 1.738684e-57 |
| MsG0180000834.01 | MsG0580028306.01 | 0.808905 | 2.461580e-50 | 1.424735e-47 |
| MsG0180000834.01 | MsG0580028419.01 | 0.800856 | 1.184095e-48 | 5.572520e-46 |
| MsG0180000834.01 | MsG0580029001.01 | 0.856690 | 2.712491e-62 | 6.527122e-59 |
| MsG0180000834.01 | MsG0580029862.01 | 0.833364 | 5.565863e-56 | 6.395737e-53 |
| MsG0180000834.01 | MsG0680030516.01 | 0.836655 | 8.240851e-57 | 1.045171e-53 |
| MsG0180000834.01 | MsG0680030858.01 | 0.820766 | 5.767631e-53 | 4.605430e-50 |
| MsG0180000834.01 | MsG0680031826.01 | 0.845283 | 4.472290e-59 | 7.416281e-56 |
| MsG0180000834.01 | MsG0680032473.01 | -0.821599 | 3.705844e-53 | 3.028389e-50 |
| MsG0180000834.01 | MsG0680032850.01 | 0.826504 | 2.616239e-54 | 2.458101e-51 |
| MsG0180000834.01 | MsG0680034759.01 | -0.808861 | 2.515237e-50 | 1.454137e-47 |
| MsG0180000834.01 | MsG0780035965.01 | 0.822705 | 2.053395e-53 | 1.731814e-50 |
| MsG0180000834.01 | MsG0780036347.01 | -0.804061 | 2.587805e-49 | 1.321492e-46 |
| MsG0180000834.01 | MsG0780036711.01 | 0.802582 | 5.240294e-49 | 2.576324e-46 |
| MsG0180000834.01 | MsG0780036792.01 | 0.845645 | 3.568390e-59 | 5.986992e-56 |
| MsG0180000834.01 | MsG0780037363.01 | 0.824558 | 7.563838e-54 | 6.723297e-51 |
| MsG0180000834.01 | MsG0780038056.01 | 0.816791 | 4.608968e-52 | 3.297540e-49 |
| MsG0180000834.01 | MsG0780038313.01 | -0.813407 | 2.599614e-51 | 1.696293e-48 |
| MsG0180000834.01 | MsG0780039161.01 | 0.814657 | 1.377974e-51 | 9.300757e-49 |
| MsG0180000834.01 | MsG0780040277.01 | 0.830529 | 2.790108e-55 | 2.947293e-52 |
| MsG0180000834.01 | MsG0780040278.01 | 0.803116 | 4.064369e-49 | 2.025553e-46 |
| MsG0180000834.01 | MsG0780040603.01 | 0.832934 | 7.120096e-56 | 8.076872e-53 |
| MsG0180000834.01 | MsG0780040684.01 | 0.811494 | 6.806977e-51 | 4.219979e-48 |
| MsG0180000834.01 | MsG0780040965.01 | 0.803889 | 2.810611e-49 | 1.428931e-46 |
| MsG0180000834.01 | MsG0780041174.01 | 0.809148 | 2.183262e-50 | 1.272008e-47 |
| MsG0180000834.01 | MsG0780041331.01 | 0.812913 | 3.337708e-51 | 2.148808e-48 |
| MsG0180000834.01 | MsG0780041385.01 | 0.820837 | 5.553389e-53 | 4.443225e-50 |
| MsG0180000834.01 | MsG0780041828.01 | 0.814142 | 1.791048e-51 | 1.192168e-48 |
| MsG0180000834.01 | MsG0880041847.01 | 0.819255 | 1.278223e-52 | 9.786506e-50 |
| MsG0180000834.01 | MsG0880042044.01 | 0.841603 | 4.298744e-58 | 6.349382e-55 |
| MsG0180000834.01 | MsG0880042086.01 | 0.828837 | 7.198418e-55 | 7.237762e-52 |
| MsG0180000834.01 | MsG0880042415.01 | 0.834234 | 3.373040e-56 | 3.978226e-53 |
| MsG0180000834.01 | MsG0880043024.01 | 0.869695 | 2.552861e-66 | 9.668712e-63 |
| MsG0180000834.01 | MsG0880043107.01 | 0.826811 | 2.210663e-54 | 2.095392e-51 |
| MsG0180000834.01 | MsG0880043277.01 | 0.830953 | 2.196198e-55 | 2.349210e-52 |
| MsG0180000834.01 | MsG0880044487.01 | 0.806538 | 7.833991e-50 | 4.263028e-47 |
| MsG0180000834.01 | MsG0880044901.01 | -0.873639 | 1.258481e-67 | 5.500231e-64 |
| MsG0180000834.01 | MsG0880044985.01 | 0.808215 | 3.455090e-50 | 1.964084e-47 |
| MsG0180000834.01 | MsG0880045444.01 | 0.819803 | 9.585568e-53 | 7.452287e-50 |
| MsG0180000834.01 | MsG0880046054.01 | 0.817846 | 2.668359e-52 | 1.965096e-49 |
| MsG0180000834.01 | MsG0880046200.01 | 0.804905 | 1.725881e-49 | 9.007403e-47 |
| MsG0180000834.01 | MsG0880046334.01 | -0.830735 | 2.483674e-55 | 2.639740e-52 |
| MsG0180000834.01 | MsG0880046382.01 | 0.818132 | 2.299247e-52 | 1.706576e-49 |
| MsG0180000834.01 | MsG0880046399.01 | -0.816884 | 4.393439e-52 | 3.151327e-49 |
| MsG0180000834.01 | MsG0880046434.01 | -0.818743 | 1.671685e-52 | 1.261882e-49 |
| MsG0180000834.01 | MsG0880046764.01 | 0.806488 | 8.026831e-50 | 4.362362e-47 |
| MsG0180000834.01 | MsG0880046765.01 | 0.827038 | 1.951107e-54 | 1.861639e-51 |
| MsG0180000834.01 | MsG0880046946.01 | -0.818775 | 1.643611e-52 | 1.241839e-49 |
| MsG0180000834.01 | MsG0880047656.01 | 0.800392 | 1.472589e-48 | 6.848828e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000834.01.T02 | MTR_1g007490 | 76.339 | 224 | 0 | 2 | 23 | 223 | 94 | 287 | 1.27e-107 | 315 |
| MsG0180000834.01.T01 | MTR_1g007490 | 74.444 | 90 | 21 | 2 | 1 | 90 | 305 | 392 | 3.24e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000834.01.T02 | AT5G48470 | 64.732 | 224 | 26 | 2 | 23 | 223 | 96 | 289 | 2.82e-89 | 268 |
| MsG0180000834.01.T01 | AT5G48470 | 58.065 | 93 | 33 | 3 | 1 | 89 | 307 | 397 | 6.83e-25 | 95.9 |
Find 64 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1:-11854667 | MsG0180000833.01.T01:CDS |
| GCACAACTTTCCCAGGTTTA+AGG | 0.234598 | 1:+11854641 | None:intergenic |
| TTGGCTGCACAAGGAGTTAT+TGG | 0.297509 | 1:-11856013 | MsG0180000833.01.T01:CDS |
| ATTGCCTCAGTTGGAAGATA+TGG | 0.352674 | 1:-11856071 | MsG0180000833.01.T01:intron |
| AAAGACACTTGAAGTCCTTC+AGG | 0.380892 | 1:-11853562 | MsG0180000833.01.T01:intron |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1:-11854372 | MsG0180000833.01.T01:intron |
| AGGGTTTCAGTAGGATTTGC+TGG | 0.394147 | 1:-11854547 | MsG0180000833.01.T01:intron |
| CATGATCGAGCTTGCTGAAA+AGG | 0.406361 | 1:-11855942 | MsG0180000833.01.T01:CDS |
| TAAATTGGTGGCCTTAAACC+TGG | 0.433999 | 1:-11854652 | MsG0180000833.01.T01:CDS |
| GTCTTGTCTGGTATATATGC+TGG | 0.441648 | 1:-11854090 | MsG0180000833.01.T01:intron |
| AGAAGAAGCCCGTGATATGA+TGG | 0.446513 | 1:-11854915 | MsG0180000833.01.T01:CDS |
| TCAGTTGGAAGATATGGATA+TGG | 0.459065 | 1:-11856065 | MsG0180000833.01.T01:intron |
| AGAAACATGCCCGGGCGTAC+AGG | 0.472167 | 1:+11854389 | None:intergenic |
| CAAGCTCGATCATGTAATCA+AGG | 0.480867 | 1:+11855951 | None:intergenic |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1:-11854425 | MsG0180000833.01.T01:intron |
| AAATTTGTTATTGCCTCAGT+TGG | 0.487433 | 1:-11856080 | MsG0180000833.01.T01:intron |
| ATGCCCGGGCGTACAGGATG+TGG | 0.493271 | 1:+11854395 | None:intergenic |
| AAGAAGTTCCTTACCTGGGG+TGG | 0.495817 | 1:+11855608 | None:intergenic |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1:+11854634 | None:intergenic |
| AAATTGGTGGCCTTAAACCT+GGG | 0.499398 | 1:-11854651 | MsG0180000833.01.T01:CDS |
| GAAGCCACATCCTGTACGCC+CGG | 0.507103 | 1:-11854399 | MsG0180000833.01.T01:intron |
| TAAACCTGGGAAAGTTGTGC+TGG | 0.509132 | 1:-11854638 | MsG0180000833.01.T01:intron |
| CAGATCGAAAACTGCTTGCA+AGG | 0.510311 | 1:-11854952 | MsG0180000833.01.T01:CDS |
| TGAAAAGGACCAGGATGATA+AGG | 0.514097 | 1:-11855927 | MsG0180000833.01.T01:intron |
| TTTCAGTAGGATTTGCTGGA+AGG | 0.527571 | 1:-11854543 | MsG0180000833.01.T01:intron |
| TGAGAAAGTAGCAGTGGAGT+TGG | 0.529397 | 1:-11856032 | MsG0180000833.01.T01:CDS |
| TTCAGTAGGATTTGCTGGAA+GGG | 0.534641 | 1:-11854542 | MsG0180000833.01.T01:intron |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1:-11854855 | MsG0180000833.01.T01:intron |
| AATTTATACATGTAACATAG+TGG | 0.544664 | 1:+11856098 | None:intergenic |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1:-11854567 | MsG0180000833.01.T01:intron |
| GCCCGTGATATGATGGGAGG+GGG | 0.546168 | 1:-11854908 | MsG0180000833.01.T01:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1:+11854842 | None:intergenic |
| CGAGCTTGCTGAAAAGGACC+AGG | 0.550984 | 1:-11855936 | MsG0180000833.01.T01:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1:-11854664 | MsG0180000833.01.T01:CDS |
| GATGCAGCGCAAGTCACTGT+TGG | 0.554159 | 1:-11855675 | MsG0180000833.01.T01:intron |
| AAAATCACACCTTATCATCC+TGG | 0.554236 | 1:+11855918 | None:intergenic |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1:-11854613 | MsG0180000833.01.T01:intron |
| AGAAGTTCCTTACCTGGGGT+GGG | 0.562953 | 1:+11855609 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1:-11854861 | MsG0180000833.01.T01:CDS |
| AGCCCGTGATATGATGGGAG+GGG | 0.571772 | 1:-11854909 | MsG0180000833.01.T01:CDS |
| GAAGAAGCCCGTGATATGAT+GGG | 0.572557 | 1:-11854914 | MsG0180000833.01.T01:CDS |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1:+11854381 | None:intergenic |
| TGGTAAGAGAGTTGATCAGA+TGG | 0.580714 | 1:-11855993 | MsG0180000833.01.T01:CDS |
| AGAATCTGAGAAAGTAGCAG+TGG | 0.584761 | 1:-11856038 | MsG0180000833.01.T01:CDS |
| GCAGTGGAGTTGGCTGCACA+AGG | 0.598277 | 1:-11856022 | MsG0180000833.01.T01:CDS |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1:-11854556 | MsG0180000833.01.T01:intron |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1:-11854421 | MsG0180000833.01.T01:intron |
| GATGGAATCTGATTTCATGA+TGG | 0.604669 | 1:-11855975 | MsG0180000833.01.T01:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1:+11854380 | None:intergenic |
| AGTTAAATGCTATCTCCTGA+AGG | 0.608001 | 1:+11853547 | None:intergenic |
| AAGCCCGTGATATGATGGGA+GGG | 0.613927 | 1:-11854910 | MsG0180000833.01.T01:CDS |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1:-11854601 | MsG0180000833.01.T01:intron |
| AAGCTCGATCATGTAATCAA+GGG | 0.627384 | 1:+11855952 | None:intergenic |
| AAGCCACATCCTGTACGCCC+GGG | 0.634835 | 1:-11854398 | MsG0180000833.01.T01:intron |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1:+11854864 | None:intergenic |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1:-11854586 | MsG0180000833.01.T01:intron |
| CCCGTGATATGATGGGAGGG+GGG | 0.648810 | 1:-11854907 | MsG0180000833.01.T01:CDS |
| GAAGCCCGTGATATGATGGG+AGG | 0.651249 | 1:-11854911 | MsG0180000833.01.T01:CDS |
| TTGGACGAAAGAAATGACCG+TGG | 0.661469 | 1:-11854881 | MsG0180000833.01.T01:CDS |
| ATATCCATATCTTCCAACTG+AGG | 0.664906 | 1:+11856067 | None:intergenic |
| GTTGAACTTGAATTTCAATG+TGG | 0.669501 | 1:-11856134 | MsG0180000833.01.T01:intron |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1:-11854566 | MsG0180000833.01.T01:intron |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1:+11854845 | None:intergenic |
| ATATATGCTGGATCTGACAA+TGG | 0.706008 | 1:-11854078 | MsG0180000833.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | Chr1:11856902-11856921 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTA+TGG | - | Chr1:11856910-11856929 | MsG0180000833.01.T01:intron | 0.0% |
| !! | AAAAAAAAAAAAAGGATTAT+AGG | + | Chr1:11856895-11856914 | None:intergenic | 10.0% |
| !! | ACATATAATTGTAAAATACT+TGG | - | Chr1:11856101-11856120 | MsG0180000833.01.T01:intron | 15.0% |
| !! | TTTGAAAATAGAAACATTTA+TGG | + | Chr1:11856386-11856405 | None:intergenic | 15.0% |
| !!! | ATTAAATTTGAATCGTTTTT+GGG | + | Chr1:11853352-11853371 | None:intergenic | 15.0% |
| !!! | TGTATAGATTTAAAACTAAA+TGG | - | Chr1:11855644-11855663 | MsG0180000833.01.T01:CDS | 15.0% |
| !! | AAATCGTATTATGGTTAATT+TGG | + | Chr1:11854631-11854650 | None:intergenic | 20.0% |
| !! | AATAGAAACATTTATGGATT+TGG | + | Chr1:11856380-11856399 | None:intergenic | 20.0% |
| !! | AATCTATTACAATCTACATT+TGG | - | Chr1:11854570-11854589 | MsG0180000833.01.T01:intron | 20.0% |
| !! | AATTTATACATGTAACATAG+TGG | + | Chr1:11854292-11854311 | None:intergenic | 20.0% |
| !! | ACAATTATATGTTAATTCTC+AGG | + | Chr1:11856093-11856112 | None:intergenic | 20.0% |
| !! | ACCATTCATCATAAAAAATA+TGG | + | Chr1:11856051-11856070 | None:intergenic | 20.0% |
| !! | AGATTGTAATAGATTATAGT+TGG | + | Chr1:11854565-11854584 | None:intergenic | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | Chr1:11855321-11855340 | None:intergenic | 20.0% |
| !! | TAATAATCAGGATATATATC+AGG | + | Chr1:11856198-11856217 | None:intergenic | 20.0% |
| !! | TAGAAATAGATATTTATGAC+AGG | + | Chr1:11856427-11856446 | None:intergenic | 20.0% |
| !! | TCAAGTAAAATAACTTACAA+GGG | + | Chr1:11853732-11853751 | None:intergenic | 20.0% |
| !! | TTCAAGTAAAATAACTTACA+AGG | + | Chr1:11853733-11853752 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | Chr1:11856271-11856290 | None:intergenic | 20.0% |
| !!! | GATTAAATTTGAATCGTTTT+TGG | + | Chr1:11853353-11853372 | None:intergenic | 20.0% |
| !!! | TTAAATTTGAATCGTTTTTG+GGG | + | Chr1:11853351-11853370 | None:intergenic | 20.0% |
| !!! | TTAATTTTAAACGCTATGTT+TGG | - | Chr1:11853378-11853397 | MsG0180000833.01.T01:intron | 20.0% |
| !!! | TTACAATTTTCACTTTGTAA+AGG | + | Chr1:11857029-11857048 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTCATGTTATATT+TGG | - | Chr1:11856598-11856617 | MsG0180000833.01.T01:intron | 20.0% |
| ! | AAAAGAATGTCCTTATCAAT+TGG | - | Chr1:11854067-11854086 | MsG0180000833.01.T01:intron | 25.0% |
| ! | AAAGAATGTCCTTATCAATT+GGG | - | Chr1:11854068-11854087 | MsG0180000833.01.T01:intron | 25.0% |
| ! | AAGAAAAAGAAATGTTTGCA+AGG | + | Chr1:11854189-11854208 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | Chr1:11856127-11856146 | MsG0180000833.01.T01:intron | 25.0% |
| ! | ATCAAAATATATGCACAGTT+AGG | + | Chr1:11854695-11854714 | None:intergenic | 25.0% |
| ! | ATCTTTAATTATCCTATGGA+AGG | - | Chr1:11856515-11856534 | MsG0180000833.01.T01:intron | 25.0% |
| ! | ATGATTAAACAACTGTATGA+AGG | + | Chr1:11855099-11855118 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | Chr1:11855394-11855413 | MsG0180000833.01.T01:CDS | 25.0% |
| ! | GTTATCAAAGTAAAACAGTT+TGG | + | Chr1:11856157-11856176 | None:intergenic | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | Chr1:11856128-11856147 | MsG0180000833.01.T01:intron | 25.0% |
| ! | TCCATAGGATAATTAAAGAT+CGG | + | Chr1:11856515-11856534 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | + | Chr1:11856210-11856229 | None:intergenic | 25.0% |
| ! | TTTGAATTCAATTTCTCCAA+CGG | + | Chr1:11853797-11853816 | None:intergenic | 25.0% |
| !! | AAACATAATGAAAAAGCGTA+AGG | + | Chr1:11853447-11853466 | None:intergenic | 25.0% |
| !! | ATTCTGTTGTTTGTGTTAAA+AGG | - | Chr1:11855599-11855618 | MsG0180000833.01.T01:intron | 25.0% |
| !! | TTCTGTTGTTTGTGTTAAAA+GGG | - | Chr1:11855600-11855619 | MsG0180000833.01.T01:intron | 25.0% |
| !! | TTGCAAACATTTCTTTTTCT+TGG | - | Chr1:11854188-11854207 | MsG0180000833.01.T01:intron | 25.0% |
| !!! | ATACTTTTCTATTTTTTGCC+AGG | - | Chr1:11856275-11856294 | MsG0180000833.01.T01:intron | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | Chr1:11854876-11854895 | MsG0180000833.01.T01:CDS | 25.0% |
| !!! | GCCATATTTTTTATGATGAA+TGG | - | Chr1:11856047-11856066 | MsG0180000833.01.T01:CDS | 25.0% |
| !!! | TGGCTTGTTACTTTATAATA+TGG | + | Chr1:11856738-11856757 | None:intergenic | 25.0% |
| !!! | TGTGCTCTGAATTTATATTT+TGG | + | Chr1:11854095-11854114 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGTGAAGAAGTA+TGG | - | Chr1:11856923-11856942 | MsG0180000833.01.T01:intron | 25.0% |
| AAAAGACATAAGTCATTCAG+TGG | + | Chr1:11856776-11856795 | None:intergenic | 30.0% | |
| AAGGATAGAAAAAGTTAACC+AGG | + | Chr1:11855302-11855321 | None:intergenic | 30.0% | |
| AAGTGGAAGTTGTTAAATTG+TGG | + | Chr1:11853471-11853490 | None:intergenic | 30.0% | |
| ACAACTTGCCATAATATGTT+TGG | - | Chr1:11853817-11853836 | MsG0180000833.01.T01:intron | 30.0% | |
| ACCGATCTTTAATTATCCTA+TGG | - | Chr1:11856511-11856530 | MsG0180000833.01.T01:intron | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | + | Chr1:11854873-11854892 | None:intergenic | 30.0% | |
| AGTGGATCATGATGATTAAA+TGG | + | Chr1:11856758-11856777 | None:intergenic | 30.0% | |
| ATATATCAGGAACTGAGTAT+GGG | + | Chr1:11856185-11856204 | None:intergenic | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | Chr1:11855774-11855793 | MsG0180000833.01.T01:intron | 30.0% | |
| CAACTTGCCATAATATGTTT+GGG | - | Chr1:11853818-11853837 | MsG0180000833.01.T01:intron | 30.0% | |
| CGTTGCAAAAAATATGCTTT+CGG | - | Chr1:11855672-11855691 | MsG0180000833.01.T01:intron | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | Chr1:11855723-11855742 | MsG0180000833.01.T01:intron | 30.0% | |
| GATGTCAGAAATTCTTGATT+AGG | - | Chr1:11857076-11857095 | MsG0180000833.01.T01:intron | 30.0% | |
| GGTAATCATTTCTTGAAGAA+CGG | + | Chr1:11853711-11853730 | None:intergenic | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | Chr1:11855720-11855739 | MsG0180000833.01.T01:intron | 30.0% | |
| GTTGAACTTGAATTTCAATG+TGG | - | Chr1:11854253-11854272 | MsG0180000833.01.T01:intron | 30.0% | |
| TAAAACGTAAGATCTCTCTA+AGG | + | Chr1:11854048-11854067 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | Chr1:11854874-11854893 | None:intergenic | 30.0% | |
| TATATATCAGGAACTGAGTA+TGG | + | Chr1:11856186-11856205 | None:intergenic | 30.0% | |
| TTCGAACGAAAAACAAAGTT+TGG | - | Chr1:11856694-11856713 | MsG0180000833.01.T01:intron | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | Chr1:11855373-11855392 | None:intergenic | 30.0% |
| ! | ATGGTTAATTTGGTCTGTTA+GGG | + | Chr1:11854621-11854640 | None:intergenic | 30.0% |
| ! | TATGGTTAATTTGGTCTGTT+AGG | + | Chr1:11854622-11854641 | None:intergenic | 30.0% |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | Chr1:11854918-11854937 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | Chr1:11854919-11854938 | None:intergenic | 30.0% |
| !! | AAATTTGTTATTGCCTCAGT+TGG | - | Chr1:11854307-11854326 | MsG0180000833.01.T01:intron | 30.0% |
| !! | TATTTTGGACCCAATTGATA+AGG | + | Chr1:11854080-11854099 | None:intergenic | 30.0% |
| AAAATCACACCTTATCATCC+TGG | + | Chr1:11854472-11854491 | None:intergenic | 35.0% | |
| AAATGAAAACTCAGAGGAAG+AGG | - | Chr1:11853627-11853646 | MsG0180000833.01.T01:intron | 35.0% | |
| AAGCTCGATCATGTAATCAA+GGG | + | Chr1:11854438-11854457 | None:intergenic | 35.0% | |
| AAGCTCTCCCAAACATATTA+TGG | + | Chr1:11853828-11853847 | None:intergenic | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | Chr1:11854988-11855007 | MsG0180000833.01.T01:intron | 35.0% | |
| AGTTAAATGCTATCTCCTGA+AGG | + | Chr1:11856843-11856862 | None:intergenic | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | Chr1:11856309-11856328 | MsG0180000833.01.T01:intron | 35.0% | |
| ATATCCATATCTTCCAACTG+AGG | + | Chr1:11854323-11854342 | None:intergenic | 35.0% | |
| ATTTACAAGAGTTCAACCGT+TGG | - | Chr1:11853778-11853797 | MsG0180000833.01.T01:intron | 35.0% | |
| CGAAATCAACATATCAAGAC+CGG | + | Chr1:11854124-11854143 | None:intergenic | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | Chr1:11855344-11855363 | MsG0180000833.01.T01:intron | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | + | Chr1:11854786-11854805 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | Chr1:11855526-11855545 | None:intergenic | 35.0% | |
| GATATTGCACTTGAAAGATG+CGG | + | Chr1:11855235-11855254 | None:intergenic | 35.0% | |
| GATGGAATCTGATTTCATGA+TGG | - | Chr1:11854412-11854431 | MsG0180000833.01.T01:intron | 35.0% | |
| GCTTCAACTTAAAACACTGT+TGG | + | Chr1:11853495-11853514 | None:intergenic | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | Chr1:11855364-11855383 | None:intergenic | 35.0% | |
| TAACCGAAATGAAAACTCAG+AGG | - | Chr1:11853621-11853640 | MsG0180000833.01.T01:intron | 35.0% | |
| TCAGTTGGAAGATATGGATA+TGG | - | Chr1:11854322-11854341 | MsG0180000833.01.T01:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | Chr1:11855016-11855035 | MsG0180000833.01.T01:intron | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | - | Chr1:11854902-11854921 | MsG0180000833.01.T01:CDS | 35.0% | |
| TGCTAGGCTAAATCGTATTA+TGG | + | Chr1:11854640-11854659 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | Chr1:11855526-11855545 | MsG0180000833.01.T01:intron | 35.0% | |
| TTAAAGAAGTTCCTTACCTG+GGG | + | Chr1:11854785-11854804 | None:intergenic | 35.0% | |
| TTATCCTATGGAAGGTAACT+AGG | - | Chr1:11856523-11856542 | MsG0180000833.01.T01:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | Chr1:11855690-11855709 | MsG0180000833.01.T01:intron | 35.0% | |
| TTGTAGCTAGATGAAAATGC+AGG | - | Chr1:11856662-11856681 | MsG0180000833.01.T01:intron | 35.0% | |
| TTGTTTGTGTTAAAAGGGCT+TGG | - | Chr1:11855605-11855624 | MsG0180000833.01.T01:intron | 35.0% | |
| ! | ATTTTGTGATTACACGACTC+CGG | - | Chr1:11854151-11854170 | MsG0180000833.01.T01:intron | 35.0% |
| ! | CATTTTCATCTAGCTACAAG+TGG | + | Chr1:11856661-11856680 | None:intergenic | 35.0% |
| ! | CTTAAAACACTGTTGGTAAG+TGG | + | Chr1:11853488-11853507 | None:intergenic | 35.0% |
| ! | CTTCCTCTGAGTTTTCATTT+CGG | + | Chr1:11853627-11853646 | None:intergenic | 35.0% |
| ! | TAAGATCTCTCTAAGGAGTA+GGG | + | Chr1:11854041-11854060 | None:intergenic | 35.0% |
| ! | TTGCGATTATTAAGCTTGCT+AGG | + | Chr1:11854656-11854675 | None:intergenic | 35.0% |
| !! | CAGAACTTGGAAGAAGTATT+AGG | + | Chr1:11855135-11855154 | None:intergenic | 35.0% |
| !! | GAGGTATTGATACAAACTTC+AGG | - | Chr1:11855053-11855072 | MsG0180000833.01.T01:intron | 35.0% |
| AAAGACACTTGAAGTCCTTC+AGG | - | Chr1:11856825-11856844 | MsG0180000833.01.T01:CDS | 40.0% | |
| AAGTGGTATTTGTGGCAACA+TGG | + | Chr1:11856644-11856663 | None:intergenic | 40.0% | |
| AATTCAGAGCACAAGTAGTC+CGG | - | Chr1:11854102-11854121 | MsG0180000833.01.T01:intron | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | - | Chr1:11854536-11854555 | MsG0180000833.01.T01:intron | 40.0% | |
| ACTTCTTCCAAGTTCTGTAG+AGG | - | Chr1:11855138-11855157 | MsG0180000833.01.T01:intron | 40.0% | |
| ACTTGTCTGTCATGATATCC+AGG | - | Chr1:11855949-11855968 | MsG0180000833.01.T01:CDS | 40.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | - | Chr1:11854349-11854368 | MsG0180000833.01.T01:intron | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | Chr1:11855699-11855718 | MsG0180000833.01.T01:intron | 40.0% | |
| ATTGCCTCAGTTGGAAGATA+TGG | - | Chr1:11854316-11854335 | MsG0180000833.01.T01:intron | 40.0% | |
| CAAGCTCGATCATGTAATCA+AGG | + | Chr1:11854439-11854458 | None:intergenic | 40.0% | |
| CATATATACCAGACAAGACC+TGG | + | Chr1:11856296-11856315 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | Chr1:11855034-11855053 | MsG0180000833.01.T01:intron | 40.0% | |
| CCTCTAATAAATCATCAGCC+TGG | + | Chr1:11855037-11855056 | None:intergenic | 40.0% | |
| CGGTTAAGAAGTTCGTTAAG+TGG | + | Chr1:11853607-11853626 | None:intergenic | 40.0% | |
| CTAGCTACAAGTGGTATTTG+TGG | + | Chr1:11856652-11856671 | None:intergenic | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | Chr1:11854989-11855008 | MsG0180000833.01.T01:intron | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | Chr1:11854987-11855006 | MsG0180000833.01.T01:intron | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | + | Chr1:11854787-11854806 | None:intergenic | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | Chr1:11856297-11856316 | MsG0180000833.01.T01:intron | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | Chr1:11856015-11856034 | MsG0180000833.01.T01:CDS | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | Chr1:11854549-11854568 | None:intergenic | 40.0% | |
| TGAAAAGGACCAGGATGATA+AGG | - | Chr1:11854460-11854479 | MsG0180000833.01.T01:intron | 40.0% | |
| TGAACCTAAAAGATGAAGGG+AGG | + | Chr1:11854870-11854889 | None:intergenic | 40.0% | |
| TGCAAGGAAAAATTGCACAC+CGG | + | Chr1:11854173-11854192 | None:intergenic | 40.0% | |
| TTGAGAACCTCTACAGAACT+TGG | + | Chr1:11855148-11855167 | None:intergenic | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | Chr1:11854537-11854556 | None:intergenic | 40.0% | |
| TTTGATGAACCTGCAAGCAA+TGG | + | Chr1:11856807-11856826 | None:intergenic | 40.0% | |
| ! | AAATTGGTGGCCTTAAACCT+GGG | - | Chr1:11855736-11855755 | MsG0180000833.01.T01:intron | 40.0% |
| ! | AACTCCTCCCTTCATCTTTT+AGG | - | Chr1:11854863-11854882 | MsG0180000833.01.T01:CDS | 40.0% |
| ! | ACGTGAAGCACTTCTTAAAG+TGG | - | Chr1:11853672-11853691 | MsG0180000833.01.T01:intron | 40.0% |
| ! | CGTGAAGCACTTCTTAAAGT+GGG | - | Chr1:11853673-11853692 | MsG0180000833.01.T01:intron | 40.0% |
| ! | GTAAGATCTCTCTAAGGAGT+AGG | + | Chr1:11854042-11854061 | None:intergenic | 40.0% |
| ! | TAAATTGGTGGCCTTAAACC+TGG | - | Chr1:11855735-11855754 | MsG0180000833.01.T01:intron | 40.0% |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | - | Chr1:11854394-11854413 | MsG0180000833.01.T01:intron | 40.0% |
| !! | TCAGAAAAGTGTTCGAGAAG+TGG | + | Chr1:11854809-11854828 | None:intergenic | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | Chr1:11855845-11855864 | MsG0180000833.01.T01:intron | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | Chr1:11855844-11855863 | MsG0180000833.01.T01:intron | 40.0% |
| !!! | ATCGTTTTTGGGGTTCTATC+TGG | + | Chr1:11853341-11853360 | None:intergenic | 40.0% |
| !!! | ATTTTTTGCCAGGTCTTGTC+TGG | - | Chr1:11856285-11856304 | MsG0180000833.01.T01:intron | 40.0% |
| !!! | TCGTTTTTGGGGTTCTATCT+GGG | + | Chr1:11853340-11853359 | None:intergenic | 40.0% |
| AACTAAAAAATGCCCACCCC+AGG | - | Chr1:11854766-11854785 | MsG0180000833.01.T01:intron | 45.0% | |
| AATCGCAACACACACATGCT+GGG | - | Chr1:11854668-11854687 | MsG0180000833.01.T01:CDS | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | Chr1:11856010-11856029 | None:intergenic | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | Chr1:11855472-11855491 | MsG0180000833.01.T01:CDS | 45.0% | |
| AGCACCTAGTTACCTTCCAT+AGG | + | Chr1:11856530-11856549 | None:intergenic | 45.0% | |
| AGCGAAACGAGTTACGAAGT+TGG | - | Chr1:11853571-11853590 | MsG0180000833.01.T01:intron | 45.0% | |
| AGCGTAAGGAGATGTTTGTG+TGG | + | Chr1:11853433-11853452 | None:intergenic | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | Chr1:11855840-11855859 | MsG0180000833.01.T01:intron | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | + | Chr1:11855756-11855775 | None:intergenic | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | + | Chr1:11854858-11854877 | None:intergenic | 45.0% | |
| CAGATCGAAAACTGCTTGCA+AGG | - | Chr1:11855435-11855454 | MsG0180000833.01.T01:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | Chr1:11854531-11854550 | MsG0180000833.01.T01:intron | 45.0% | |
| GAAACGAGTTACGAAGTTGG+TGG | - | Chr1:11853574-11853593 | MsG0180000833.01.T01:intron | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | Chr1:11855473-11855492 | MsG0180000833.01.T01:CDS | 45.0% | |
| GAGATGTTTGTGTGGATAGC+GGG | + | Chr1:11853425-11853444 | None:intergenic | 45.0% | |
| GATGATGACAGGGTTTCAGT+AGG | - | Chr1:11855831-11855850 | MsG0180000833.01.T01:intron | 45.0% | |
| GCACAACTTTCCCAGGTTTA+AGG | + | Chr1:11855749-11855768 | None:intergenic | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | Chr1:11854544-11854563 | None:intergenic | 45.0% | |
| GGAGATGTTTGTGTGGATAG+CGG | + | Chr1:11853426-11853445 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | Chr1:11855786-11855805 | MsG0180000833.01.T01:intron | 45.0% | |
| TAAACCTGGGAAAGTTGTGC+TGG | - | Chr1:11855749-11855768 | MsG0180000833.01.T01:intron | 45.0% | |
| TAATCGCAACACACACATGC+TGG | - | Chr1:11854667-11854686 | MsG0180000833.01.T01:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | Chr1:11855548-11855567 | None:intergenic | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | Chr1:11856334-11856353 | MsG0180000833.01.T01:intron | 45.0% | |
| TGAACCTGCAAGCAATGGAA+AGG | + | Chr1:11856802-11856821 | None:intergenic | 45.0% | |
| TGAGAAAGTAGCAGTGGAGT+TGG | - | Chr1:11854355-11854374 | MsG0180000833.01.T01:intron | 45.0% | |
| TGGTATCACTGCACAACATC+TGG | - | Chr1:11856329-11856348 | MsG0180000833.01.T01:intron | 45.0% | |
| TGTTCCTTTCCATTGCTTGC+AGG | - | Chr1:11856795-11856814 | MsG0180000833.01.T01:CDS | 45.0% | |
| TTGGACGAAAGAAATGACCG+TGG | - | Chr1:11855506-11855525 | MsG0180000833.01.T01:intron | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | - | Chr1:11854374-11854393 | MsG0180000833.01.T01:intron | 45.0% | |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | Chr1:11855428-11855447 | None:intergenic | 45.0% |
| ! | ATGTCATTTAGATTCGCCCC+TGG | + | Chr1:11855008-11855027 | None:intergenic | 45.0% |
| ! | CACTGCACAACATCTGGAAT+GGG | - | Chr1:11856335-11856354 | MsG0180000833.01.T01:intron | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | Chr1:11855437-11855456 | None:intergenic | 45.0% |
| ! | GTGAGTTGAATTGGATGACG+TGG | - | Chr1:11855867-11855886 | MsG0180000833.01.T01:intron | 45.0% |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | Chr1:11856256-11856275 | None:intergenic | 45.0% |
| ! | TGGCAACGATGATGATGACA+GGG | - | Chr1:11855821-11855840 | MsG0180000833.01.T01:intron | 45.0% |
| ! | TGTCATTTAGATTCGCCCCT+GGG | + | Chr1:11855007-11855026 | None:intergenic | 45.0% |
| !! | CAGAAGCTTTCTAAAACGCC+TGG | - | Chr1:11855281-11855300 | MsG0180000833.01.T01:intron | 45.0% |
| !! | CATGATCGAGCTTGCTGAAA+AGG | - | Chr1:11854445-11854464 | MsG0180000833.01.T01:intron | 45.0% |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | Chr1:11854957-11854976 | MsG0180000833.01.T01:CDS | 45.0% |
| !!! | CAGGCGTTTTAGAAAGCTTC+TGG | + | Chr1:11855283-11855302 | None:intergenic | 45.0% |
| AAAAATGCCCACCCCAGGTA+AGG | - | Chr1:11854771-11854790 | MsG0180000833.01.T01:intron | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | + | Chr1:11854782-11854801 | None:intergenic | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | + | Chr1:11854781-11854800 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | Chr1:11856247-11856266 | None:intergenic | 50.0% | |
| ATATACTCTACCTCCGGCTG+AGG | - | Chr1:11855532-11855551 | MsG0180000833.01.T01:intron | 50.0% | |
| CTAAGGAGTAGGGTCATGTC+TGG | + | Chr1:11854031-11854050 | None:intergenic | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | Chr1:11856009-11856028 | None:intergenic | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | Chr1:11855962-11855981 | MsG0180000833.01.T01:CDS | 50.0% | |
| TTCGTAACTCGTTTCGCTGC+TGG | + | Chr1:11853569-11853588 | None:intergenic | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | Chr1:11855477-11855496 | MsG0180000833.01.T01:CDS | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | Chr1:11855820-11855839 | MsG0180000833.01.T01:intron | 50.0% |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | Chr1:11855801-11855820 | MsG0180000833.01.T01:intron | 50.0% |
| ! | GCTGGAAGGGTGAGTTGAAT+TGG | - | Chr1:11855858-11855877 | MsG0180000833.01.T01:intron | 50.0% |
| !! | ACGAGTTACGAAGTTGGTGG+TGG | - | Chr1:11853577-11853596 | MsG0180000833.01.T01:intron | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | Chr1:11855487-11855506 | MsG0180000833.01.T01:CDS | 50.0% |
| CATCAACATACCTCAGCCGG+AGG | + | Chr1:11855545-11855564 | None:intergenic | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | Chr1:11854712-11854731 | MsG0180000833.01.T01:intron | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | Chr1:11855966-11855985 | MsG0180000833.01.T01:CDS | 55.0% | |
| TCCCCCCTCCCATCATATCA+CGG | + | Chr1:11855484-11855503 | None:intergenic | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | - | Chr1:11854939-11854958 | MsG0180000833.01.T01:CDS | 55.0% | |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | Chr1:11855478-11855497 | MsG0180000833.01.T01:CDS | 55.0% |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | Chr1:11855476-11855495 | MsG0180000833.01.T01:CDS | 55.0% |
| !! | CGAGCTTGCTGAAAAGGACC+AGG | - | Chr1:11854451-11854470 | MsG0180000833.01.T01:intron | 55.0% |
| AACCGCCACCAGCTGCAACT+CGG | + | Chr1:11854950-11854969 | None:intergenic | 60.0% | |
| AAGCCACATCCTGTACGCCC+GGG | - | Chr1:11855989-11856008 | MsG0180000833.01.T01:CDS | 60.0% | |
| AGAAACATGCCCGGGCGTAC+AGG | + | Chr1:11856001-11856020 | None:intergenic | 60.0% | |
| CCCCCCTCCCATCATATCAC+GGG | + | Chr1:11855483-11855502 | None:intergenic | 60.0% | |
| GAAGCCACATCCTGTACGCC+CGG | - | Chr1:11855988-11856007 | MsG0180000833.01.T01:CDS | 60.0% | |
| GCAGTGGAGTTGGCTGCACA+AGG | - | Chr1:11854365-11854384 | MsG0180000833.01.T01:intron | 60.0% | |
| TCCGTCCTGTCACACTTGCC+TGG | + | Chr1:11855970-11855989 | None:intergenic | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | - | Chr1:11854942-11854961 | MsG0180000833.01.T01:CDS | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | Chr1:11855480-11855499 | MsG0180000833.01.T01:CDS | 60.0% |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | Chr1:11855479-11855498 | MsG0180000833.01.T01:CDS | 60.0% |
| ATGCCCGGGCGTACAGGATG+TGG | + | Chr1:11855995-11856014 | None:intergenic | 65.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | - | Chr1:11854945-11854964 | MsG0180000833.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 11853314 | 11857095 | 11853314 | ID=MsG0180000834.01;Name=MsG0180000834.01 |
| Chr1 | mRNA | 11853314 | 11857095 | 11853314 | ID=MsG0180000834.01.T01;Parent=MsG0180000834.01;Name=MsG0180000834.01.T01;_AED=0.43;_eAED=0.44;_QI=1013|0.77|0.8|1|0.22|0.3|10|211|90 |
| Chr1 | exon | 11855928 | 11856083 | 11855928 | ID=MsG0180000834.01.T01:exon:522;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11855622 | 11855690 | 11855622 | ID=MsG0180000834.01.T01:exon:523;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11854856 | 11854999 | 11854856 | ID=MsG0180000834.01.T01:exon:525;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11854543 | 11854688 | 11854543 | ID=MsG0180000834.01.T01:exon:526;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11854341 | 11854438 | 11854341 | ID=MsG0180000834.01.T01:exon:527;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11854079 | 11854112 | 11854079 | ID=MsG0180000834.01.T01:exon:528;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11853506 | 11853592 | 11853506 | ID=MsG0180000834.01.T01:exon:529;Parent=MsG0180000834.01.T01 |
| Chr1 | exon | 11853314 | 11853485 | 11853314 | ID=MsG0180000834.01.T01:exon:530;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11856676 | 11857095 | 11856676 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11855928 | 11856083 | 11855928 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11855622 | 11855690 | 11855622 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11855354 | 11855524 | 11855354 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11854856 | 11854999 | 11854856 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | five_prime_UTR | 11854636 | 11854688 | 11854636 | ID=MsG0180000834.01.T01:five_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | CDS | 11854543 | 11854635 | 11854543 | ID=MsG0180000834.01.T01:cds;Parent=MsG0180000834.01.T01 |
| Chr1 | CDS | 11854341 | 11854438 | 11854341 | ID=MsG0180000834.01.T01:cds;Parent=MsG0180000834.01.T01 |
| Chr1 | CDS | 11854079 | 11854112 | 11854079 | ID=MsG0180000834.01.T01:cds;Parent=MsG0180000834.01.T01 |
| Chr1 | CDS | 11853545 | 11853592 | 11853545 | ID=MsG0180000834.01.T01:cds;Parent=MsG0180000834.01.T01 |
| Chr1 | three_prime_UTR | 11853506 | 11853544 | 11853506 | ID=MsG0180000834.01.T01:three_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | three_prime_UTR | 11853314 | 11853485 | 11853314 | ID=MsG0180000834.01.T01:three_prime_utr;Parent=MsG0180000834.01.T01 |
| Chr1 | mRNA | 11854847 | 11857095 | 11854847 | ID=MsG0180000834.01.T02;Parent=MsG0180000834.01;Name=MsG0180000834.01.T02;_AED=0.46;_eAED=0.46;_QI=315|0.33|0.5|1|0.66|1|4|0|224 |
| Chr1 | exon | 11855928 | 11856173 | 11855928 | ID=MsG0180000834.01.T02:exon:531;Parent=MsG0180000834.01.T02 |
| Chr1 | exon | 11854847 | 11854999 | 11854847 | ID=MsG0180000834.01.T02:exon:532;Parent=MsG0180000834.01.T02 |
| Chr1 | five_prime_UTR | 11856781 | 11857095 | 11856781 | ID=MsG0180000834.01.T02:five_prime_utr;Parent=MsG0180000834.01.T02 |
| Chr1 | CDS | 11856676 | 11856780 | 11856676 | ID=MsG0180000834.01.T02:cds;Parent=MsG0180000834.01.T02 |
| Chr1 | CDS | 11855928 | 11856173 | 11855928 | ID=MsG0180000834.01.T02:cds;Parent=MsG0180000834.01.T02 |
| Chr1 | CDS | 11855354 | 11855524 | 11855354 | ID=MsG0180000834.01.T02:cds;Parent=MsG0180000834.01.T02 |
| Chr1 | CDS | 11854847 | 11854999 | 11854847 | ID=MsG0180000834.01.T02:cds;Parent=MsG0180000834.01.T02 |
| Gene Sequence |
| Protein sequence |
