AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005052.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005052.01.T01 MTR_1g092650 88.017 701 54 2 1 674 1 698 0.0 1227
MsG0180005052.01.T01 MTR_1g092650 87.892 702 54 2 1 674 1 699 0.0 1227
MsG0180005052.01.T01 MTR_1g050512 42.533 750 326 18 4 663 2 736 2.88e-171 508
MsG0180005052.01.T01 MTR_1g064620 50.336 149 30 3 503 651 1 105 3.38e-35 129
MsG0180005052.01.T01 MTR_1g010290 29.960 247 164 4 362 601 1137 1381 1.43e-26 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005052.01.T01 AT5G04670 34.177 790 358 24 4 664 2 758 3.01e-110 350
MsG0180005052.01.T01 AT5G04670 34.177 790 358 24 4 664 2 758 3.01e-110 350
MsG0180005052.01.T01 AT4G32620 29.787 282 178 6 328 601 1016 1285 1.79e-25 113
MsG0180005052.01.T01 AT4G32620 29.787 282 178 6 328 601 1016 1285 1.92e-25 113

Find 124 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTATAAAGATTCTTAA+AGG 0.199469 1:+86229611 None:intergenic
GCAATTTATGACATGGATTC+AGG 0.243207 1:-86229423 MsG0180005052.01.T01:CDS
TGCCTTTAAGAATCTTTATA+AGG 0.259835 1:-86229613 MsG0180005052.01.T01:CDS
TGACAGACTTTGCCTCTAAA+AGG 0.266310 1:+86229919 None:intergenic
ACGTCTGGGTTTCTTATTAG+AGG 0.290091 1:+86229968 None:intergenic
TTGAGTCTGACAGGTGTTAT+AGG 0.291885 1:-86229839 MsG0180005052.01.T01:CDS
TTACTCATGTTCTTTGTTGA+AGG 0.301868 1:+86230047 None:intergenic
GGAAAGCTTATAGCAGAAAA+AGG 0.328154 1:-86231562 MsG0180005052.01.T01:CDS
TAGAAGCTGTACATGGTTAT+TGG 0.339423 1:-86229227 MsG0180005052.01.T01:CDS
ATATATTTCGCAGCAGGAAT+TGG 0.357826 1:+86229570 None:intergenic
TTTAACATGGGTGTACCTAT+TGG 0.360342 1:+86229692 None:intergenic
CCGTCTATTTCAATAACTTC+AGG 0.362349 1:+86230197 None:intergenic
TGAATCAATTGTTGATGCTT+TGG 0.367100 1:-86229337 MsG0180005052.01.T01:CDS
AAGAGGGATACAATTCTTAC+AGG 0.371182 1:-86231315 MsG0180005052.01.T01:intron
AGGCAAACCACAACGGTGTT+TGG 0.384459 1:-86231731 MsG0180005052.01.T01:CDS
GATGCATAAACAGAACAAAT+AGG 0.390898 1:+86231338 None:intergenic
AAACCTTGTTCTGAGGATAT+TGG 0.398494 1:-86231452 MsG0180005052.01.T01:CDS
TGAGTCTGACAGGTGTTATA+GGG 0.399315 1:-86229838 MsG0180005052.01.T01:CDS
AGTTTGCTAATCGTCAGAAT+TGG 0.410244 1:-86229638 MsG0180005052.01.T01:CDS
CTCAGAAGTTTCTTTCATGA+AGG 0.418411 1:+86230241 None:intergenic
CTACTGTAAATGAATAGATC+AGG 0.420029 1:+86226288 None:intergenic
TCAAAGTTAGCTGGTCGAAA+TGG 0.430420 1:-86230143 MsG0180005052.01.T01:CDS
CATTATCTTATCAGCCTTGA+GGG 0.431408 1:+86229728 None:intergenic
AAAATGGTCTCATTAATCAA+TGG 0.437286 1:-86229672 MsG0180005052.01.T01:CDS
TCGGAGACGTTGGCAGAATC+CGG 0.438249 1:+86231647 None:intergenic
TACGTTCAGGGCGGCAGTTA+TGG 0.439176 1:-86231670 MsG0180005052.01.T01:CDS
ACAATAACCGCAATCTTACA+TGG 0.439837 1:+86231476 None:intergenic
TAGGTACACCCATGTTAAAA+TGG 0.440716 1:-86229688 MsG0180005052.01.T01:CDS
GTAAAACTCATCACTATTTG+TGG 0.442021 1:+86229467 None:intergenic
GGAGAACTTCACCTAGGATA+AGG 0.446286 1:-86230082 MsG0180005052.01.T01:CDS
ATAATCATTCATCGCTGCTT+AGG 0.449647 1:-86229188 MsG0180005052.01.T01:CDS
CGTCCACCCTTTGAATCAAA+AGG 0.450079 1:+86230014 None:intergenic
TTCATAACGATGGCAGTGAT+AGG 0.450747 1:-86231592 MsG0180005052.01.T01:CDS
TGGATTCAGGTGATGAAGAT+TGG 0.451148 1:-86229410 MsG0180005052.01.T01:CDS
ACTTCACAGACGCCTGGTAC+TGG 0.452665 1:+86229546 None:intergenic
GCAACTGTTAGTCAAACGTC+TGG 0.453001 1:+86229953 None:intergenic
AAATGGTCTCATTAATCAAT+GGG 0.454696 1:-86229671 MsG0180005052.01.T01:CDS
GACAGGTGTTATAGGGTAGA+AGG 0.454707 1:-86229831 MsG0180005052.01.T01:CDS
TCAGAAGAAACGCCCAAGTC+AGG 0.458748 1:-86229795 MsG0180005052.01.T01:CDS
TGAGACCATGCTCTTCCAAT+AGG 0.459852 1:-86229707 MsG0180005052.01.T01:CDS
AAGATGCCATTCTCCTGACT+TGG 0.460644 1:+86229782 None:intergenic
CGACGATCGGAGGAAGAAAC+CGG 0.464676 1:-86231627 MsG0180005052.01.T01:CDS
CGTCTATTTCAATAACTTCA+GGG 0.465966 1:+86230198 None:intergenic
TTGAGAACCGTTGTGATGTT+CGG 0.470153 1:-86231401 MsG0180005052.01.T01:CDS
GAGAACTTCACCTAGGATAA+GGG 0.474136 1:-86230081 MsG0180005052.01.T01:CDS
TATCACTGCCATCGTTATGA+AGG 0.486096 1:+86231594 None:intergenic
CATCTTGCAGTAAAGAAAGA+TGG 0.486109 1:-86229765 MsG0180005052.01.T01:CDS
ATGACTGAAGCAACTCAAGC+TGG 0.488992 1:-86226134 MsG0180005052.01.T01:CDS
GTTCTGTTACTGCCAACGTT+GGG 0.489791 1:-86230481 MsG0180005052.01.T01:CDS
GGAGTCGTCAAAGGCGGTGG+CGG 0.494775 1:-86231710 MsG0180005052.01.T01:CDS
CCGGACGTGTGTTACGTTCA+GGG 0.496740 1:-86231682 MsG0180005052.01.T01:CDS
CAGAGCAATGACATGTAAAA+CGG 0.496775 1:-86229445 MsG0180005052.01.T01:CDS
ATAAGAATCCGGTCGATTGA+AGG 0.501681 1:+86229494 None:intergenic
TTCTGAGCTTCCCTTATCCT+AGG 0.502621 1:+86230071 None:intergenic
ACCGGACGTGTGTTACGTTC+AGG 0.503995 1:-86231683 MsG0180005052.01.T01:CDS
TTTGGAGTCGTCAAAGGCGG+TGG 0.505206 1:-86231713 MsG0180005052.01.T01:CDS
TTCAGGGCGGCAGTTATGGC+CGG 0.507992 1:-86231666 MsG0180005052.01.T01:CDS
TACCGTTCCCTTCAATCGAC+CGG 0.509691 1:-86229502 MsG0180005052.01.T01:CDS
TTTGTGGATATATAAGAATC+CGG 0.513569 1:+86229483 None:intergenic
TAAGAATCCGGTCGATTGAA+GGG 0.524732 1:+86229495 None:intergenic
GTCACATCTTCAAAGTTAGC+TGG 0.526716 1:-86230152 MsG0180005052.01.T01:CDS
TCATTATCTTATCAGCCTTG+AGG 0.527722 1:+86229727 None:intergenic
GGATTCAGGTGATGAAGATT+GGG 0.529751 1:-86229409 MsG0180005052.01.T01:CDS
TGGAGGATCTGTAGATGCAT+TGG 0.533088 1:-86226114 MsG0180005052.01.T01:CDS
CGGTTTCTTCCTCCGATCGT+CGG 0.534589 1:+86231628 None:intergenic
ACTGGAATATATTTCGCAGC+AGG 0.536483 1:+86229564 None:intergenic
GCGAAATATATTCCAGTACC+AGG 0.540796 1:-86229558 MsG0180005052.01.T01:CDS
CCCTGAACGTAACACACGTC+CGG 0.545468 1:+86231682 None:intergenic
TATTGTGAAACCTTGTTCTG+AGG 0.546870 1:-86231459 MsG0180005052.01.T01:CDS
TTATGAAGGTTTGTCTTCGC+CGG 0.549540 1:+86231608 None:intergenic
TTTAGAGGCAAAGTCTGTCA+TGG 0.554339 1:-86229916 MsG0180005052.01.T01:CDS
TGCAGATTTAGCAGTCTACA+AGG 0.562190 1:-86226174 MsG0180005052.01.T01:CDS
TATTGATTGTTGAGTCTGAC+AGG 0.562502 1:-86229848 MsG0180005052.01.T01:CDS
ATCTTGCAGTAAAGAAAGAT+GGG 0.562948 1:-86229764 MsG0180005052.01.T01:CDS
CACCGTTGTGGTTTGCCTCG+TGG 0.564346 1:+86231736 None:intergenic
GATGTTCGGTCTCACATTCG+AGG 0.564970 1:-86231387 MsG0180005052.01.T01:CDS
GGTTCTGTTACTGCCAACGT+TGG 0.565488 1:-86230482 MsG0180005052.01.T01:CDS
TTCATTTACAGTAGCTGCTG+AGG 0.566104 1:-86226279 MsG0180005052.01.T01:CDS
GTTGCTATTGATATTGAAGA+CGG 0.567379 1:-86230311 MsG0180005052.01.T01:CDS
TAAGAATCTTGTTAGCAAGA+AGG 0.568720 1:-86229253 MsG0180005052.01.T01:CDS
GTTTCAAGAACATGTTTCAG+AGG 0.568874 1:-86229367 MsG0180005052.01.T01:CDS
GTTTGCCTCGTGGCAACCGA+TGG 0.568919 1:+86231746 None:intergenic
AGATGCCATTCTCCTGACTT+GGG 0.569885 1:+86229783 None:intergenic
CACGTCTCTACATTCTGCAG+TGG 0.569908 1:-86230384 MsG0180005052.01.T01:CDS
CTGCCAACGTCTCCGACGAT+CGG 0.572504 1:-86231640 MsG0180005052.01.T01:CDS
AAACGCCCAAGTCAGGAGAA+TGG 0.572896 1:-86229788 MsG0180005052.01.T01:CDS
GGATCTGTAGATGCATTGGC+AGG 0.577953 1:-86226110 MsG0180005052.01.T01:CDS
TGTTCTGTTTATGCATCAAG+AGG 0.580200 1:-86231332 MsG0180005052.01.T01:CDS
TCAGAGACTTCACAGACGCC+TGG 0.581949 1:+86229540 None:intergenic
AAAGGCGGTGGCGGAGACAC+CGG 0.583024 1:-86231701 MsG0180005052.01.T01:CDS
CCTCCGATCGTCGGAGACGT+TGG 0.584393 1:+86231637 None:intergenic
AGCAGCTGCAAATGAATCAA+CGG 0.591487 1:-86226243 MsG0180005052.01.T01:CDS
TGTAGAGACGTGAAACATTG+AGG 0.592452 1:+86230395 None:intergenic
GTCTATTTCAATAACTTCAG+GGG 0.592740 1:+86230199 None:intergenic
GACGACTCCAAACACCGTTG+TGG 0.593876 1:+86231724 None:intergenic
ACGGTGTTTGGAGTCGTCAA+AGG 0.595511 1:-86231719 MsG0180005052.01.T01:CDS
GGTTGAAATGCCATCACCAT+CGG 0.595783 1:-86231762 None:intergenic
GATTCAACGACAAAGGATGA+AGG 0.598555 1:-86231501 MsG0180005052.01.T01:CDS
ATGGTTATTGGATGAGAAAG+CGG 0.601479 1:-86229215 MsG0180005052.01.T01:CDS
TAAAACGGCAATTTATGACA+TGG 0.604442 1:-86229430 MsG0180005052.01.T01:CDS
TACTGTAAATGAATAGATCA+GGG 0.604550 1:+86226289 None:intergenic
CAACTGTTAGTCAAACGTCT+GGG 0.609687 1:+86229954 None:intergenic
CCTGAAGTTATTGAAATAGA+CGG 0.609763 1:-86230197 MsG0180005052.01.T01:CDS
CTCGTGGCAACCGATGGTGA+TGG 0.611593 1:+86231752 None:intergenic
ACGCTCGACGCATTCAGATG+AGG 0.612215 1:-86230103 MsG0180005052.01.T01:CDS
GTTGACTCAATGCACCCTCA+AGG 0.616453 1:-86229742 MsG0180005052.01.T01:CDS
GTTCTGTTTATGCATCAAGA+GGG 0.617668 1:-86231331 MsG0180005052.01.T01:CDS
CCAACGTCTCCGACGATCGG+AGG 0.634193 1:-86231637 MsG0180005052.01.T01:CDS
TGGTCTCATTAATCAATGGG+TGG 0.640024 1:-86229668 MsG0180005052.01.T01:CDS
AAGGCTGTAGAAGCTGTACA+TGG 0.640142 1:-86229234 MsG0180005052.01.T01:CDS
ATCCGGTCGATTGAAGGGAA+CGG 0.652409 1:+86229500 None:intergenic
AAACCAATATCCTCAGAACA+AGG 0.653855 1:+86231449 None:intergenic
GTGTACCTATTGGAAGAGCA+TGG 0.656582 1:+86229702 None:intergenic
ACTGAAGCAACTCAAGCTGG+AGG 0.660051 1:-86226131 MsG0180005052.01.T01:CDS
GTGTCTATAGATGGATGTCG+TGG 0.661569 1:-86226318 MsG0180005052.01.T01:intron
AAACTGGCAAATCCCAACGT+TGG 0.662902 1:+86230469 None:intergenic
GAAGGATCCATGTAAGATTG+CGG 0.664528 1:-86231483 MsG0180005052.01.T01:CDS
GTGTTTGGAGTCGTCAAAGG+CGG 0.675172 1:-86231716 MsG0180005052.01.T01:CDS
AGATGAGGAGAACTTCACCT+AGG 0.682586 1:-86230088 MsG0180005052.01.T01:CDS
AAGACAAACCTTCATAACGA+TGG 0.687315 1:-86231602 MsG0180005052.01.T01:CDS
CATCACCATCGGTTGCCACG+AGG 0.704977 1:-86231751 MsG0180005052.01.T01:CDS
TGCCACGAGGCAAACCACAA+CGG 0.717744 1:-86231738 MsG0180005052.01.T01:CDS
TGTGAGACCGAACATCACAA+CGG 0.753251 1:+86231394 None:intergenic
GACGTGTGTTACGTTCAGGG+CGG 0.770842 1:-86231679 MsG0180005052.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAAAAATTAAA+AGG - Chr1:86231045-86231064 MsG0180005052.01.T01:intron 0.0%
!!! TTTTTTTTCTCTTTTTTTTT+GGG + Chr1:86230031-86230050 None:intergenic 10.0%
!! AAAAGAAAAAAGAAAAAGAA+AGG - Chr1:86230825-86230844 MsG0180005052.01.T01:intron 15.0%
!! AAAGAAAAAAGAAAAAGAAA+GGG - Chr1:86230826-86230845 MsG0180005052.01.T01:intron 15.0%
!! AATTACAAATCTAAAAAAGA+GGG - Chr1:86230862-86230881 MsG0180005052.01.T01:intron 15.0%
!! ACAATAAATAAATAACTGTA+GGG + Chr1:86226900-86226919 None:intergenic 15.0%
!! ATTTATGGTAAAAAAATAAG+TGG - Chr1:86226928-86226947 MsG0180005052.01.T01:intron 15.0%
!! CAAAAAAAAAGAGAAAAAAA+AGG - Chr1:86230030-86230049 MsG0180005052.01.T01:CDS 15.0%
!! TACAATAAATAAATAACTGT+AGG + Chr1:86226901-86226920 None:intergenic 15.0%
!! TATTATTTCATATTGTTAAC+AGG - Chr1:86229101-86229120 MsG0180005052.01.T01:intron 15.0%
!! TGCATTAAAAACATAATATA+AGG + Chr1:86226684-86226703 None:intergenic 15.0%
!! TGTCAAAAATAATAAAAGAA+AGG - Chr1:86230626-86230645 MsG0180005052.01.T01:intron 15.0%
!! TTTATGGTAAAAAAATAAGT+GGG - Chr1:86226929-86226948 MsG0180005052.01.T01:intron 15.0%
!!! CTTTTTTTTCTCTTTTTTTT+TGG + Chr1:86230032-86230051 None:intergenic 15.0%
!!! TTTAATTTTTTTCCTGTAAA+CGG - Chr1:86226962-86226981 MsG0180005052.01.T01:intron 15.0%
!!! TTTGATTTCTTTTTCAATTT+CGG - Chr1:86228811-86228830 MsG0180005052.01.T01:intron 15.0%
!!! TTTTATTTATTTTTTGACAG+TGG - Chr1:86226783-86226802 MsG0180005052.01.T01:intron 15.0%
!!! TTTTGTCAATTTAATATCTT+TGG - Chr1:86226813-86226832 MsG0180005052.01.T01:intron 15.0%
!! AAAAAAAAAAAGGAAGACAT+AGG + Chr1:86229346-86229365 None:intergenic 20.0%
!! AAAAAAAACCAAAACTATGA+CGG + Chr1:86228949-86228968 None:intergenic 20.0%
!! AAAATTAAAAGGTCAAGATA+TGG - Chr1:86231056-86231075 MsG0180005052.01.T01:intron 20.0%
!! AAACGATATAAACAGAAAAT+AGG + Chr1:86229525-86229544 None:intergenic 20.0%
!! AACAAGTAGATAAATATTAG+AGG + Chr1:86229939-86229958 None:intergenic 20.0%
!! ATGAAAAAACTGTGATTTAT+TGG - Chr1:86228571-86228590 MsG0180005052.01.T01:intron 20.0%
!! CAATTACAAATCTAAAAAAG+AGG - Chr1:86230861-86230880 MsG0180005052.01.T01:intron 20.0%
!! GATTTATAATTCATTGAGAT+TGG - Chr1:86227214-86227233 MsG0180005052.01.T01:intron 20.0%
!! TAAGTTGTATATATTACGAA+AGG - Chr1:86227243-86227262 MsG0180005052.01.T01:intron 20.0%
!! TGTAATGAATTGTAAATTGA+TGG - Chr1:86226740-86226759 MsG0180005052.01.T01:intron 20.0%
!! TTACAGGAAAAAAATTAAAC+AGG + Chr1:86226961-86226980 None:intergenic 20.0%
!! TTATGGTAAAAAAATAAGTG+GGG - Chr1:86226930-86226949 MsG0180005052.01.T01:intron 20.0%
!!! AATTTTGACCAAATTTGTAA+AGG + Chr1:86230526-86230545 None:intergenic 20.0%
!!! ATTTATCTACTTGTTTTTAG+AGG - Chr1:86229944-86229963 MsG0180005052.01.T01:CDS 20.0%
!!! CAAGATACTTTTATTGTTTT+TGG - Chr1:86231404-86231423 MsG0180005052.01.T01:CDS 20.0%
!!! CAATGTATGATATTGATTTT+TGG - Chr1:86227173-86227192 MsG0180005052.01.T01:intron 20.0%
!!! CTCTTTTTTAGATTTGTAAT+TGG + Chr1:86230863-86230882 None:intergenic 20.0%
!!! TAAAATCAAAAGAGTTTTCA+CGG - Chr1:86230425-86230444 MsG0180005052.01.T01:CDS 20.0%
!!! TCTGATGTTTTTTATTTTGT+TGG - Chr1:86226593-86226612 MsG0180005052.01.T01:intron 20.0%
!!! TGTTTTTGTTAAACTATTAC+CGG - Chr1:86230262-86230281 MsG0180005052.01.T01:CDS 20.0%
!!! TTAATTTTTTTCCTGTAAAC+GGG - Chr1:86226963-86226982 MsG0180005052.01.T01:intron 20.0%
!!! TTTATTAGTTTGAGCTATTA+AGG - Chr1:86228844-86228863 MsG0180005052.01.T01:intron 20.0%
!!! TTTTGTTTCCTTTACAAATT+TGG - Chr1:86230515-86230534 MsG0180005052.01.T01:intron 20.0%
! AAAATGGTCTCATTAATCAA+TGG - Chr1:86228177-86228196 MsG0180005052.01.T01:intron 25.0%
! AAAGAAAAAAAAATAGGCCA+AGG + Chr1:86229615-86229634 None:intergenic 25.0%
! AAATAAATAACTGTAGGGTT+AGG + Chr1:86226895-86226914 None:intergenic 25.0%
! AAATGGTCTCATTAATCAAT+GGG - Chr1:86228178-86228197 MsG0180005052.01.T01:intron 25.0%
! ACTTTGACCAAAAAAACAAA+TGG - Chr1:86227044-86227063 MsG0180005052.01.T01:intron 25.0%
! ATGAGTTTAATGTTCTTTCA+GGG - Chr1:86227346-86227365 MsG0180005052.01.T01:intron 25.0%
! ATTGTATATGTGTCTATAGA+TGG - Chr1:86231522-86231541 MsG0180005052.01.T01:CDS 25.0%
! CATTTAATGATAAAGAGTGA+TGG - Chr1:86229487-86229506 MsG0180005052.01.T01:CDS 25.0%
! CTCCTTATAAAGATTCTTAA+AGG + Chr1:86228241-86228260 None:intergenic 25.0%
! GAAAAATCTACACAAAACAA+TGG + Chr1:86227427-86227446 None:intergenic 25.0%
! GAGGGAAAAGAAAAAAAAAT+AGG + Chr1:86229621-86229640 None:intergenic 25.0%
! GTTTAAAAACAATTGAGAGA+AGG - Chr1:86230118-86230137 MsG0180005052.01.T01:CDS 25.0%
! TACTGTAAATGAATAGATCA+GGG + Chr1:86231563-86231582 None:intergenic 25.0%
! TATGAAATGAGATCTTGAAT+TGG - Chr1:86231345-86231364 MsG0180005052.01.T01:CDS 25.0%
! TCAGAACATCTTATAATTCA+TGG + Chr1:86230572-86230591 None:intergenic 25.0%
! TCTTAATACAGTATCTTGTT+TGG - Chr1:86231449-86231468 MsG0180005052.01.T01:CDS 25.0%
! TTTGTGGATATATAAGAATC+CGG + Chr1:86228369-86228388 None:intergenic 25.0%
!! AAAATCAAAAGAGTTTTCAC+GGG - Chr1:86230426-86230445 MsG0180005052.01.T01:CDS 25.0%
!! ACTAATAATCTAGAGTTTGA+CGG - Chr1:86229401-86229420 MsG0180005052.01.T01:CDS 25.0%
!! ATAATTACATGAAGCATTAG+AGG + Chr1:86231304-86231323 None:intergenic 25.0%
!! TAAATGTTTTCAAACTCCTT+TGG + Chr1:86229473-86229492 None:intergenic 25.0%
!! TGCCTTTAAGAATCTTTATA+AGG - Chr1:86228236-86228255 MsG0180005052.01.T01:intron 25.0%
!! TTTTCTTTTCCCTCTAATTA+GGG - Chr1:86229627-86229646 MsG0180005052.01.T01:CDS 25.0%
!! TTTTTCTTTTCCCTCTAATT+AGG - Chr1:86229626-86229645 MsG0180005052.01.T01:CDS 25.0%
!!! AATTGAGCATTGAAATGTTT+CGG + Chr1:86228729-86228748 None:intergenic 25.0%
!!! ATTTTTTCTTGCATGTAATC+TGG - Chr1:86227510-86227529 MsG0180005052.01.T01:intron 25.0%
!!! CTTTGAGTTGACTATAAAAA+AGG - Chr1:86231475-86231494 MsG0180005052.01.T01:CDS 25.0%
!!! GAATTACCTTTTGATTCAAA+GGG - Chr1:86227829-86227848 MsG0180005052.01.T01:intron 25.0%
!!! GTTTTCGTGTTTCTTATTTA+TGG - Chr1:86226423-86226442 MsG0180005052.01.T01:intron 25.0%
!!! GTTTTTGGATTATTGTTTCT+GGG - Chr1:86231419-86231438 MsG0180005052.01.T01:CDS 25.0%
!!! GTTTTTGGTATTTTAACTTG+TGG - Chr1:86229180-86229199 MsG0180005052.01.T01:CDS 25.0%
!!! TAATGAGACCATTTTAACAT+GGG + Chr1:86228172-86228191 None:intergenic 25.0%
!!! TACTACTCCATTTGTTTTTT+TGG + Chr1:86227054-86227073 None:intergenic 25.0%
!!! TATTTATTTTTTGACAGTGG+TGG - Chr1:86226786-86226805 MsG0180005052.01.T01:intron 25.0%
!!! TGGTTTTAAGATATATGTTC+AGG - Chr1:86227485-86227504 MsG0180005052.01.T01:intron 25.0%
!!! TGTTTTTGGATTATTGTTTC+TGG - Chr1:86231418-86231437 MsG0180005052.01.T01:CDS 25.0%
!!! TTAATGAGACCATTTTAACA+TGG + Chr1:86228173-86228192 None:intergenic 25.0%
AACTTACCTTGCAAAACATT+TGG + Chr1:86229078-86229097 None:intergenic 30.0%
AATAGTTGTAATCTGCTAAG+GGG - Chr1:86227117-86227136 MsG0180005052.01.T01:intron 30.0%
AATGCGATGATAGGAAAATA+TGG - Chr1:86230788-86230807 MsG0180005052.01.T01:intron 30.0%
ACTCATGTTATGTAAGATCA+AGG + Chr1:86227332-86227351 None:intergenic 30.0%
ATAAACAGAAAATAGGCAGT+GGG + Chr1:86229518-86229537 None:intergenic 30.0%
ATCCAATCCCAAAAAATCTT+CGG + Chr1:86229445-86229464 None:intergenic 30.0%
ATCTTGCAGTAAAGAAAGAT+GGG - Chr1:86228085-86228104 MsG0180005052.01.T01:intron 30.0%
CAATAGTTGTAATCTGCTAA+GGG - Chr1:86227116-86227135 MsG0180005052.01.T01:intron 30.0%
CATGAGTTTAATGTTCTTTC+AGG - Chr1:86227345-86227364 MsG0180005052.01.T01:intron 30.0%
CCTGAAGTTATTGAAATAGA+CGG - Chr1:86227652-86227671 MsG0180005052.01.T01:intron 30.0%
CGTCTATTTCAATAACTTCA+GGG + Chr1:86227654-86227673 None:intergenic 30.0%
CTACAAAGGAAAGAATTTGT+AGG + Chr1:86230976-86230995 None:intergenic 30.0%
CTACAAATTCTTTCCTTTGT+AGG - Chr1:86230974-86230993 MsG0180005052.01.T01:intron 30.0%
CTACTGTAAATGAATAGATC+AGG + Chr1:86231564-86231583 None:intergenic 30.0%
CTGTATATTTGTGTTGCATA+AGG + Chr1:86229260-86229279 None:intergenic 30.0%
GACAAACTAAGCATAATTCA+AGG + Chr1:86226573-86226592 None:intergenic 30.0%
GAGAAAAAAAAGGAAGCAAA+TGG - Chr1:86230040-86230059 MsG0180005052.01.T01:CDS 30.0%
GATAAGATTTGAAAAAGCTG+TGG - Chr1:86226996-86227015 MsG0180005052.01.T01:intron 30.0%
GATGCATAAACAGAACAAAT+AGG + Chr1:86226514-86226533 None:intergenic 30.0%
GTAAAACTCATCACTATTTG+TGG + Chr1:86228385-86228404 None:intergenic 30.0%
GTAAGATCAAGGTGTAAATT+AGG + Chr1:86227321-86227340 None:intergenic 30.0%
GTCTATTTCAATAACTTCAG+GGG + Chr1:86227653-86227672 None:intergenic 30.0%
TAAAACGGCAATTTATGACA+TGG - Chr1:86228419-86228438 MsG0180005052.01.T01:intron 30.0%
TAAGAATCTTGTTAGCAAGA+AGG - Chr1:86228596-86228615 MsG0180005052.01.T01:intron 30.0%
TAATGATAAAGAGTGATGGT+GGG - Chr1:86229491-86229510 MsG0180005052.01.T01:CDS 30.0%
TATAAACAGAAAATAGGCAG+TGG + Chr1:86229519-86229538 None:intergenic 30.0%
TATATTTGTGTTGCATAAGG+TGG + Chr1:86229257-86229276 None:intergenic 30.0%
TCAATAGTTGTAATCTGCTA+AGG - Chr1:86227115-86227134 MsG0180005052.01.T01:intron 30.0%
TCGCTTCTATTTATTTGACT+CGG + Chr1:86229051-86229070 None:intergenic 30.0%
TGAATCAATTGTTGATGCTT+TGG - Chr1:86228512-86228531 MsG0180005052.01.T01:intron 30.0%
TTAATGATAAAGAGTGATGG+TGG - Chr1:86229490-86229509 MsG0180005052.01.T01:CDS 30.0%
TTACTCATGTTCTTTGTTGA+AGG + Chr1:86227805-86227824 None:intergenic 30.0%
TTAGATTTGTAATTGGCAAC+CGG + Chr1:86230856-86230875 None:intergenic 30.0%
TTTAATAGAGAGTAGCTAAG+CGG - Chr1:86230912-86230931 MsG0180005052.01.T01:intron 30.0%
! AAATCAAAAGAGTTTTCACG+GGG - Chr1:86230427-86230446 MsG0180005052.01.T01:CDS 30.0%
! ACAACGAAAGTGAAATTTTC+AGG - Chr1:86226326-86226345 MsG0180005052.01.T01:intron 30.0%
! CACAAGTTTAAACCTTTTAG+AGG - Chr1:86227918-86227937 MsG0180005052.01.T01:intron 30.0%
! CTAATAATCTAGAGTTTGAC+GGG - Chr1:86229402-86229421 MsG0180005052.01.T01:CDS 30.0%
! GAAAATCCAAATGTTTTGCA+AGG - Chr1:86229069-86229088 MsG0180005052.01.T01:intron 30.0%
! GTTGCTATTGATATTGAAGA+CGG - Chr1:86227538-86227557 MsG0180005052.01.T01:intron 30.0%
! TGTCTATTTCGATTTTCCAA+AGG + Chr1:86228774-86228793 None:intergenic 30.0%
! TTTAAAGTTCACGAACAACT+CGG + Chr1:86231159-86231178 None:intergenic 30.0%
!! CGAATTACCTTTTGATTCAA+AGG - Chr1:86227828-86227847 MsG0180005052.01.T01:intron 30.0%
!! TCGAAATAGACAAGTTTTGT+TGG - Chr1:86228782-86228801 MsG0180005052.01.T01:intron 30.0%
!! TGATCTATCAGATTTTGAGA+TGG - Chr1:86227564-86227583 MsG0180005052.01.T01:intron 30.0%
!!! CCTATTTTTTAACTCGAGTT+CGG + Chr1:86231186-86231205 None:intergenic 30.0%
AAAATCTTCGGGCATACTTT+AGG + Chr1:86229433-86229452 None:intergenic 35.0%
AAACCAATATCCTCAGAACA+AGG + Chr1:86226403-86226422 None:intergenic 35.0%
AAGAAAAAGAAAGGGATAGC+CGG - Chr1:86230834-86230853 MsG0180005052.01.T01:intron 35.0%
AAGACAAACCTTCATAACGA+TGG - Chr1:86226247-86226266 MsG0180005052.01.T01:CDS 35.0%
AAGAGCAAGAGTAAATCAAG+TGG + Chr1:86227151-86227170 None:intergenic 35.0%
AAGAGGGATACAATTCTTAC+AGG - Chr1:86226534-86226553 MsG0180005052.01.T01:intron 35.0%
AATCTATTTAATTCCCCTCG+AGG - Chr1:86226715-86226734 MsG0180005052.01.T01:intron 35.0%
AATTCATTACAAACCTCGAG+GGG + Chr1:86226731-86226750 None:intergenic 35.0%
ACAATAACCGCAATCTTACA+TGG + Chr1:86226376-86226395 None:intergenic 35.0%
ACAATTCATTACAAACCTCG+AGG + Chr1:86226733-86226752 None:intergenic 35.0%
ACAGGTTCATAGTATTGTGA+TGG - Chr1:86230478-86230497 MsG0180005052.01.T01:CDS 35.0%
ATAATCATTCATCGCTGCTT+AGG - Chr1:86228661-86228680 MsG0180005052.01.T01:intron 35.0%
ATATATTTCGCAGCAGGAAT+TGG + Chr1:86228282-86228301 None:intergenic 35.0%
ATGGAGTAACAAAATTGTGC+AGG - Chr1:86230059-86230078 MsG0180005052.01.T01:CDS 35.0%
ATGGTTATTGGATGAGAAAG+CGG - Chr1:86228634-86228653 MsG0180005052.01.T01:intron 35.0%
CAATTCATTACAAACCTCGA+GGG + Chr1:86226732-86226751 None:intergenic 35.0%
CAGAGCAATGACATGTAAAA+CGG - Chr1:86228404-86228423 MsG0180005052.01.T01:intron 35.0%
CATCTTGCAGTAAAGAAAGA+TGG - Chr1:86228084-86228103 MsG0180005052.01.T01:intron 35.0%
CATTATCTTATCAGCCTTGA+GGG + Chr1:86228124-86228143 None:intergenic 35.0%
CCGAACTCGAGTTAAAAAAT+AGG - Chr1:86231183-86231202 MsG0180005052.01.T01:intron 35.0%
CCGTCTATTTCAATAACTTC+AGG + Chr1:86227655-86227674 None:intergenic 35.0%
CGCTTCTATTTATTTGACTC+GGG + Chr1:86229050-86229069 None:intergenic 35.0%
CTATTAAGGCGATGTATATC+TGG - Chr1:86228858-86228877 MsG0180005052.01.T01:intron 35.0%
CTCAGAAGTTTCTTTCATGA+AGG + Chr1:86227611-86227630 None:intergenic 35.0%
GAACCAACTCGATAATAGTT+CGG - Chr1:86229663-86229682 MsG0180005052.01.T01:CDS 35.0%
GCAATTTATGACATGGATTC+AGG - Chr1:86228426-86228445 MsG0180005052.01.T01:intron 35.0%
GGAAAGCTTATAGCAGAAAA+AGG - Chr1:86226287-86226306 MsG0180005052.01.T01:CDS 35.0%
GGGTATACTATGAAGGAAAA+GGG - Chr1:86230448-86230467 MsG0180005052.01.T01:CDS 35.0%
GGTATACTATGAAGGAAAAG+GGG - Chr1:86230449-86230468 MsG0180005052.01.T01:CDS 35.0%
GTTCTGTTTATGCATCAAGA+GGG - Chr1:86226518-86226537 MsG0180005052.01.T01:intron 35.0%
GTTTCAAGAACATGTTTCAG+AGG - Chr1:86228482-86228501 MsG0180005052.01.T01:intron 35.0%
TAGAAGCTGTACATGGTTAT+TGG - Chr1:86228622-86228641 MsG0180005052.01.T01:intron 35.0%
TAGGTACACCCATGTTAAAA+TGG - Chr1:86228161-86228180 MsG0180005052.01.T01:intron 35.0%
TATTGTGAAACCTTGTTCTG+AGG - Chr1:86226390-86226409 MsG0180005052.01.T01:intron 35.0%
TCATTATCTTATCAGCCTTG+AGG + Chr1:86228125-86228144 None:intergenic 35.0%
TCCAATCCCAAAAAATCTTC+GGG + Chr1:86229444-86229463 None:intergenic 35.0%
TGTTCTGTTTATGCATCAAG+AGG - Chr1:86226517-86226536 MsG0180005052.01.T01:intron 35.0%
TGTTTGTCTTAAGCCTACAA+AGG + Chr1:86230990-86231009 None:intergenic 35.0%
TTGGGATTGCTGATAGATAA+TGG - Chr1:86230727-86230746 MsG0180005052.01.T01:intron 35.0%
TTTAACATGGGTGTACCTAT+TGG + Chr1:86228160-86228179 None:intergenic 35.0%
! AATCAAAAGAGTTTTCACGG+GGG - Chr1:86230428-86230447 MsG0180005052.01.T01:CDS 35.0%
! AGTATTATACCGTTTTGCAG+GGG - Chr1:86230683-86230702 MsG0180005052.01.T01:intron 35.0%
! ATAGATAATGGTATAGCTGG+CGG - Chr1:86230739-86230758 MsG0180005052.01.T01:intron 35.0%
! CTGATAGATAATGGTATAGC+TGG - Chr1:86230736-86230755 MsG0180005052.01.T01:intron 35.0%
! GAGTATTATACCGTTTTGCA+GGG - Chr1:86230682-86230701 MsG0180005052.01.T01:intron 35.0%
! TACATGAAGCATTAGAGGTA+GGG + Chr1:86231299-86231318 None:intergenic 35.0%
! TATTGATTGTTGAGTCTGAC+AGG - Chr1:86228001-86228020 MsG0180005052.01.T01:intron 35.0%
! TTACATGAAGCATTAGAGGT+AGG + Chr1:86231300-86231319 None:intergenic 35.0%
! TTATCTGACCGTCATAGTTT+TGG - Chr1:86228938-86228957 MsG0180005052.01.T01:intron 35.0%
! TTTTCATCACAACAGTCATC+TGG + Chr1:86228558-86228577 None:intergenic 35.0%
!! AAACCTTGTTCTGAGGATAT+TGG - Chr1:86226397-86226416 MsG0180005052.01.T01:intron 35.0%
!! AAGAGGTGTTAGAAGAAGAA+AGG + Chr1:86230365-86230384 None:intergenic 35.0%
!! AAGTTCAACGGGTTAATTGT+CGG + Chr1:86229697-86229716 None:intergenic 35.0%
!! AGAGTATTATACCGTTTTGC+AGG - Chr1:86230681-86230700 MsG0180005052.01.T01:intron 35.0%
!! AGTTTGCTAATCGTCAGAAT+TGG - Chr1:86228211-86228230 MsG0180005052.01.T01:intron 35.0%
!! ATTTTAGAAACTGCCTCAAC+AGG + Chr1:86230292-86230311 None:intergenic 35.0%
!! GAACTATTATCGAGTTGGTT+CGG + Chr1:86229664-86229683 None:intergenic 35.0%
!! TTACCTTTTGATTCAAAGGG+TGG - Chr1:86227832-86227851 MsG0180005052.01.T01:intron 35.0%
!! TTTTCAGGATTCAACGACAA+AGG - Chr1:86226341-86226360 MsG0180005052.01.T01:intron 35.0%
!!! AAGTATGCCCGAAGATTTTT+TGG - Chr1:86229434-86229453 MsG0180005052.01.T01:CDS 35.0%
!!! AGTATGCCCGAAGATTTTTT+GGG - Chr1:86229435-86229454 MsG0180005052.01.T01:CDS 35.0%
!!! ATTTTTTTCCTGTAAACGGG+TGG - Chr1:86226966-86226985 MsG0180005052.01.T01:intron 35.0%
!!! GTACGCTACAATTGTTTTAG+AGG - Chr1:86230173-86230192 MsG0180005052.01.T01:CDS 35.0%
!!! TTGGGATTTGCCAGTTTTTT+GGG - Chr1:86227386-86227405 MsG0180005052.01.T01:intron 35.0%
AAAACCCATAAGCAACGCAA+GGG - Chr1:86230328-86230347 MsG0180005052.01.T01:CDS 40.0%
AAAGCAAGCAGTGCAACAAT+GGG + Chr1:86228704-86228723 None:intergenic 40.0%
ACGTAAATTAGTCCCACATC+GGG - Chr1:86230093-86230112 MsG0180005052.01.T01:CDS 40.0%
ACGTCTGGGTTTCTTATTAG+AGG + Chr1:86227884-86227903 None:intergenic 40.0%
ACTGGAATATATTTCGCAGC+AGG + Chr1:86228288-86228307 None:intergenic 40.0%
AGCAAGAGTAAATCAAGTGG+TGG + Chr1:86227148-86227167 None:intergenic 40.0%
AGCAGCTGCAAATGAATCAA+CGG - Chr1:86231606-86231625 MsG0180005052.01.T01:CDS 40.0%
AGTGAAGGCTTGAGAACAAA+TGG + Chr1:86229000-86229019 None:intergenic 40.0%
AGTGATACTCGCTCATCAAT+AGG - Chr1:86230228-86230247 MsG0180005052.01.T01:CDS 40.0%
ATAAGAATCCGGTCGATTGA+AGG + Chr1:86228358-86228377 None:intergenic 40.0%
ATTTCCCAGTTCAACCATTG+TGG - Chr1:86230387-86230406 MsG0180005052.01.T01:CDS 40.0%
CAACTGTTAGTCAAACGTCT+GGG + Chr1:86227898-86227917 None:intergenic 40.0%
GAAGGATCCATGTAAGATTG+CGG - Chr1:86226366-86226385 MsG0180005052.01.T01:intron 40.0%
GACAATTAACCCGTTGAACT+TGG - Chr1:86229696-86229715 MsG0180005052.01.T01:CDS 40.0%
GAGAACTTCACCTAGGATAA+GGG - Chr1:86227768-86227787 MsG0180005052.01.T01:intron 40.0%
GAGAGAAAGAATGCGATGAT+AGG - Chr1:86230779-86230798 MsG0180005052.01.T01:intron 40.0%
GATTCAACGACAAAGGATGA+AGG - Chr1:86226348-86226367 MsG0180005052.01.T01:intron 40.0%
GCGAAATATATTCCAGTACC+AGG - Chr1:86228291-86228310 MsG0180005052.01.T01:intron 40.0%
GCGATGATAGGAAAATATGG+TGG - Chr1:86230791-86230810 MsG0180005052.01.T01:intron 40.0%
GGATTCAGGTGATGAAGATT+GGG - Chr1:86228440-86228459 MsG0180005052.01.T01:intron 40.0%
GGGGTATACTATGAAGGAAA+AGG - Chr1:86230447-86230466 MsG0180005052.01.T01:CDS 40.0%
GGTTCATGAACCAAGTTCAA+CGG + Chr1:86229709-86229728 None:intergenic 40.0%
GTAAATTGATGGAAACTGCG+TGG - Chr1:86226751-86226770 MsG0180005052.01.T01:intron 40.0%
GTCACATCTTCAAAGTTAGC+TGG - Chr1:86227697-86227716 MsG0180005052.01.T01:intron 40.0%
GTTCATGAACCAAGTTCAAC+GGG + Chr1:86229708-86229727 None:intergenic 40.0%
GTTCCGAACTATTATCGAGT+TGG + Chr1:86229669-86229688 None:intergenic 40.0%
GTTGAACTGGGAAATAGAAG+AGG + Chr1:86230382-86230401 None:intergenic 40.0%
TAAAGCAAGCAGTGCAACAA+TGG + Chr1:86228705-86228724 None:intergenic 40.0%
TAAGAATCCGGTCGATTGAA+GGG + Chr1:86228357-86228376 None:intergenic 40.0%
TATCACTGCCATCGTTATGA+AGG + Chr1:86226258-86226277 None:intergenic 40.0%
TATTACCGGATAACCTGTTG+AGG - Chr1:86230276-86230295 MsG0180005052.01.T01:CDS 40.0%
TCAAAGTTAGCTGGTCGAAA+TGG - Chr1:86227706-86227725 MsG0180005052.01.T01:intron 40.0%
TCACAACTCAGATTGTTCCT+TGG - Chr1:86229595-86229614 MsG0180005052.01.T01:CDS 40.0%
TGACAGACTTTGCCTCTAAA+AGG + Chr1:86227933-86227952 None:intergenic 40.0%
TGCAGATTTAGCAGTCTACA+AGG - Chr1:86231675-86231694 MsG0180005052.01.T01:CDS 40.0%
TGGATTCAGGTGATGAAGAT+TGG - Chr1:86228439-86228458 MsG0180005052.01.T01:intron 40.0%
TGGTCTCATTAATCAATGGG+TGG - Chr1:86228181-86228200 MsG0180005052.01.T01:intron 40.0%
TGTAGAGACGTGAAACATTG+AGG + Chr1:86227457-86227476 None:intergenic 40.0%
TTATGAAGGTTTGTCTTCGC+CGG + Chr1:86226244-86226263 None:intergenic 40.0%
TTCATAACGATGGCAGTGAT+AGG - Chr1:86226257-86226276 MsG0180005052.01.T01:CDS 40.0%
TTCATTTACAGTAGCTGCTG+AGG - Chr1:86231570-86231589 MsG0180005052.01.T01:CDS 40.0%
TTGAGAACCGTTGTGATGTT+CGG - Chr1:86226448-86226467 MsG0180005052.01.T01:intron 40.0%
TTTAGAGGCAAAGTCTGTCA+TGG - Chr1:86227933-86227952 MsG0180005052.01.T01:intron 40.0%
! ATGGCAGTGATAGGTTTTAC+GGG - Chr1:86226266-86226285 MsG0180005052.01.T01:CDS 40.0%
! GATGGCAGTGATAGGTTTTA+CGG - Chr1:86226265-86226284 MsG0180005052.01.T01:CDS 40.0%
! GTGTCTGCTTCCTTTGAAAA+CGG + Chr1:86229383-86229402 None:intergenic 40.0%
! GTTTTGTCATGACACCACAA+TGG + Chr1:86230404-86230423 None:intergenic 40.0%
! GTTTTTAAACTCCCCGATGT+GGG + Chr1:86230108-86230127 None:intergenic 40.0%
! TAGTCTCTTGAACTCTGGAA+GGG - Chr1:86228881-86228900 MsG0180005052.01.T01:intron 40.0%
! TGAGTCTGACAGGTGTTATA+GGG - Chr1:86228011-86228030 MsG0180005052.01.T01:intron 40.0%
! TGCATATAGTTCGACTCGAT+TGG - Chr1:86229788-86229807 MsG0180005052.01.T01:CDS 40.0%
! TGTCTGCTTCCTTTGAAAAC+GGG + Chr1:86229382-86229401 None:intergenic 40.0%
! TTGAGTCTGACAGGTGTTAT+AGG - Chr1:86228010-86228029 MsG0180005052.01.T01:intron 40.0%
! TTTAACCCTCCCGTTTTCAA+AGG - Chr1:86229370-86229389 MsG0180005052.01.T01:CDS 40.0%
!! CTTTTGATTCAAAGGGTGGA+CGG - Chr1:86227836-86227855 MsG0180005052.01.T01:intron 40.0%
!! GTTTTCAAACTCCTTTGGAG+AGG + Chr1:86229468-86229487 None:intergenic 40.0%
!! TGTTTTTAAACTCCCCGATG+TGG + Chr1:86230109-86230128 None:intergenic 40.0%
!! TTTTGATTCAAAGGGTGGAC+GGG - Chr1:86227837-86227856 MsG0180005052.01.T01:intron 40.0%
!!! GTTGGGATTTGCCAGTTTTT+TGG - Chr1:86227385-86227404 MsG0180005052.01.T01:intron 40.0%
!!! TGGGATTTGCCAGTTTTTTG+GGG - Chr1:86227387-86227406 MsG0180005052.01.T01:intron 40.0%
!!! TTGTTTTAGAGGAGTGCTAG+CGG - Chr1:86230184-86230203 MsG0180005052.01.T01:CDS 40.0%
AAACTGGCAAATCCCAACGT+TGG + Chr1:86227383-86227402 None:intergenic 45.0%
AACTGCCTCAACAGGTTATC+CGG + Chr1:86230284-86230303 None:intergenic 45.0%
AAGATGCCATTCTCCTGACT+TGG + Chr1:86228070-86228089 None:intergenic 45.0%
AAGGAAAAGGGGATTACGAC+AGG - Chr1:86230460-86230479 MsG0180005052.01.T01:CDS 45.0%
AAGGCTGTAGAAGCTGTACA+TGG - Chr1:86228615-86228634 MsG0180005052.01.T01:intron 45.0%
ACCTTGTCACCCCAAAAAAC+TGG + Chr1:86227399-86227418 None:intergenic 45.0%
AGATGAGGAGAACTTCACCT+AGG - Chr1:86227761-86227780 MsG0180005052.01.T01:intron 45.0%
AGATGCCATTCTCCTGACTT+GGG + Chr1:86228069-86228088 None:intergenic 45.0%
AGTTCACGAACAACTCGGTT+CGG + Chr1:86231154-86231173 None:intergenic 45.0%
ATGACTGAAGCAACTCAAGC+TGG - Chr1:86231715-86231734 MsG0180005052.01.T01:CDS 45.0%
CAAACCCTTGCGTTGCTTAT+GGG + Chr1:86230335-86230354 None:intergenic 45.0%
CAGCTCAAGTTCAGCTCATT+TGG + Chr1:86229730-86229749 None:intergenic 45.0%
CATTGCCAGCCCTAATTAGA+GGG + Chr1:86229639-86229658 None:intergenic 45.0%
CCAAAGGAGAGAATTGCATG+AGG + Chr1:86228758-86228777 None:intergenic 45.0%
CCTCATGCAATTCTCTCCTT+TGG - Chr1:86228755-86228774 MsG0180005052.01.T01:intron 45.0%
CGTAAATTAGTCCCACATCG+GGG - Chr1:86230094-86230113 MsG0180005052.01.T01:CDS 45.0%
CGTCCACCCTTTGAATCAAA+AGG + Chr1:86227838-86227857 None:intergenic 45.0%
GAAAACCCATAAGCAACGCA+AGG - Chr1:86230327-86230346 MsG0180005052.01.T01:CDS 45.0%
GACACCACAATGGTTGAACT+GGG + Chr1:86230394-86230413 None:intergenic 45.0%
GCAACAATGGGAAAGTTACC+TGG + Chr1:86228692-86228711 None:intergenic 45.0%
GCAACTGTTAGTCAAACGTC+TGG + Chr1:86227899-86227918 None:intergenic 45.0%
GGAGAACTTCACCTAGGATA+AGG - Chr1:86227767-86227786 MsG0180005052.01.T01:intron 45.0%
GGTGACGTGTGCGTATAATT+GGG - Chr1:86230883-86230902 MsG0180005052.01.T01:intron 45.0%
GTAGTCTCTTGAACTCTGGA+AGG - Chr1:86228880-86228899 MsG0180005052.01.T01:intron 45.0%
GTGTACCTATTGGAAGAGCA+TGG + Chr1:86228150-86228169 None:intergenic 45.0%
GTGTCTATAGATGGATGTCG+TGG - Chr1:86231531-86231550 MsG0180005052.01.T01:CDS 45.0%
GTTCTGTTACTGCCAACGTT+GGG - Chr1:86227368-86227387 MsG0180005052.01.T01:intron 45.0%
GTTGTAATCTGCTAAGGGGT+TGG - Chr1:86227121-86227140 MsG0180005052.01.T01:intron 45.0%
TCATTGCCAGCCCTAATTAG+AGG + Chr1:86229640-86229659 None:intergenic 45.0%
TCTGGTAGTCTCTTGAACTC+TGG - Chr1:86228876-86228895 MsG0180005052.01.T01:intron 45.0%
TGACACCACAATGGTTGAAC+TGG + Chr1:86230395-86230414 None:intergenic 45.0%
TGAGACCATGCTCTTCCAAT+AGG - Chr1:86228142-86228161 MsG0180005052.01.T01:intron 45.0%
TGGAGGATCTGTAGATGCAT+TGG - Chr1:86231735-86231754 MsG0180005052.01.T01:CDS 45.0%
TGTGAGACCGAACATCACAA+CGG + Chr1:86226458-86226477 None:intergenic 45.0%
TTCTGAGCTTCCCTTATCCT+AGG + Chr1:86227781-86227800 None:intergenic 45.0%
! ATCGCTGCTTAGGATTTTCC+AGG - Chr1:86228671-86228690 MsG0180005052.01.T01:intron 45.0%
! CACCTTTTTCCCCTGCAAAA+CGG + Chr1:86230695-86230714 None:intergenic 45.0%
! CGACTCGACTCGATACAAAT+TGG + Chr1:86231243-86231262 None:intergenic 45.0%
! CTTTTCCCTCTAATTAGGGC+TGG - Chr1:86229631-86229650 MsG0180005052.01.T01:CDS 45.0%
! GACAGGTGTTATAGGGTAGA+AGG - Chr1:86228018-86228037 MsG0180005052.01.T01:intron 45.0%
! TACCGTTTTGCAGGGGAAAA+AGG - Chr1:86230690-86230709 MsG0180005052.01.T01:intron 45.0%
! TGCTTCCTTTGAAAACGGGA+GGG + Chr1:86229378-86229397 None:intergenic 45.0%
! TTCACGGGGGTATACTATGA+AGG - Chr1:86230441-86230460 MsG0180005052.01.T01:CDS 45.0%
! TTTTGCAGGGGAAAAAGGTG+AGG - Chr1:86230695-86230714 MsG0180005052.01.T01:intron 45.0%
!!! GCCCGAAGATTTTTTGGGAT+TGG - Chr1:86229440-86229459 MsG0180005052.01.T01:CDS 45.0%
!! AAACAATAAAATAAAATTAA+CGG + Chr1:86229164-86229183 None:intergenic 5.0%
!! GTTAAAAAAAAAAAAAAAAA+AGG + Chr1:86229356-86229375 None:intergenic 5.0%
!! TTATTGTAATTTATTATTTA+TGG - Chr1:86226913-86226932 MsG0180005052.01.T01:intron 5.0%
!!! TAATTTTATTTTATTGTTTT+TGG - Chr1:86229165-86229184 MsG0180005052.01.T01:intron 5.0%
AAACGCCCAAGTCAGGAGAA+TGG - Chr1:86228061-86228080 MsG0180005052.01.T01:intron 50.0%
ACTGAAGCAACTCAAGCTGG+AGG - Chr1:86231718-86231737 MsG0180005052.01.T01:CDS 50.0%
AGCCTTCACTGCGAAAGAAG+AGG - Chr1:86229010-86229029 MsG0180005052.01.T01:intron 50.0%
AGGCAAACCACAACGGTGTT+TGG - Chr1:86226118-86226137 MsG0180005052.01.T01:CDS 50.0%
ATCCGGTCGATTGAAGGGAA+CGG + Chr1:86228352-86228371 None:intergenic 50.0%
ATGGTATAGCTGGCGGTTTG+CGG - Chr1:86230746-86230765 MsG0180005052.01.T01:intron 50.0%
CACGTCTCTACATTCTGCAG+TGG - Chr1:86227465-86227484 MsG0180005052.01.T01:intron 50.0%
GACCTCTTCTTTCGCAGTGA+AGG + Chr1:86229015-86229034 None:intergenic 50.0%
GATGTTCGGTCTCACATTCG+AGG - Chr1:86226462-86226481 MsG0180005052.01.T01:intron 50.0%
GCAAACCCTTGCGTTGCTTA+TGG + Chr1:86230336-86230355 None:intergenic 50.0%
GGGTGACGTGTGCGTATAAT+TGG - Chr1:86230882-86230901 MsG0180005052.01.T01:intron 50.0%
GGTTCTGTTACTGCCAACGT+TGG - Chr1:86227367-86227386 MsG0180005052.01.T01:intron 50.0%
TACCGTTCCCTTCAATCGAC+CGG - Chr1:86228347-86228366 MsG0180005052.01.T01:intron 50.0%
TCAGAAGAAACGCCCAAGTC+AGG - Chr1:86228054-86228073 MsG0180005052.01.T01:intron 50.0%
TGGGATTGGATCCTCTCCAA+AGG - Chr1:86229454-86229473 MsG0180005052.01.T01:CDS 50.0%
! ACGGTGTTTGGAGTCGTCAA+AGG - Chr1:86226130-86226149 MsG0180005052.01.T01:CDS 50.0%
! CTGCTTCCTTTGAAAACGGG+AGG + Chr1:86229379-86229398 None:intergenic 50.0%
! GACTCGATTGGTTCATGAGC+TGG - Chr1:86229800-86229819 MsG0180005052.01.T01:CDS 50.0%
! GGATCTGTAGATGCATTGGC+AGG - Chr1:86231739-86231758 MsG0180005052.01.T01:CDS 50.0%
! GGGAAAAAGGTGAGGTTGGT+GGG - Chr1:86230703-86230722 MsG0180005052.01.T01:intron 50.0%
! GTGTTTGGAGTCGTCAAAGG+CGG - Chr1:86226133-86226152 MsG0180005052.01.T01:CDS 50.0%
! GTTGACTCAATGCACCCTCA+AGG - Chr1:86228107-86228126 MsG0180005052.01.T01:intron 50.0%
! TGAAGCATTAGAGGTAGGGC+TGG + Chr1:86231295-86231314 None:intergenic 50.0%
! TTGAACTCTGGAAGGGCTCT+AGG - Chr1:86228888-86228907 MsG0180005052.01.T01:intron 50.0%
!! AAAGGTGAGGTTGGTGGGTT+TGG - Chr1:86230708-86230727 MsG0180005052.01.T01:intron 50.0%
!! AAGGTGAGGTTGGTGGGTTT+GGG - Chr1:86230709-86230728 MsG0180005052.01.T01:intron 50.0%
!! GGAAAAAAGTAGCGCTGGTG+TGG - Chr1:86227858-86227877 MsG0180005052.01.T01:intron 50.0%
!!! GCCAGTTTTTTGGGGTGACA+AGG - Chr1:86227395-86227414 MsG0180005052.01.T01:intron 50.0%
ACCGGACGTGTGTTACGTTC+AGG - Chr1:86226166-86226185 MsG0180005052.01.T01:CDS 55.0%
ACGCTCGACGCATTCAGATG+AGG - Chr1:86227746-86227765 MsG0180005052.01.T01:intron 55.0%
ACTTCACAGACGCCTGGTAC+TGG + Chr1:86228306-86228325 None:intergenic 55.0%
CCCTGAACGTAACACACGTC+CGG + Chr1:86226170-86226189 None:intergenic 55.0%
CCGGACGTGTGTTACGTTCA+GGG - Chr1:86226167-86226186 MsG0180005052.01.T01:CDS 55.0%
CCTGTAAACGGGTGGATGCA+GGG - Chr1:86226974-86226993 MsG0180005052.01.T01:intron 55.0%
CGACGATCGGAGGAAGAAAC+CGG - Chr1:86226222-86226241 MsG0180005052.01.T01:CDS 55.0%
CGGTTTCTTCCTCCGATCGT+CGG + Chr1:86226224-86226243 None:intergenic 55.0%
GACGACTCCAAACACCGTTG+TGG + Chr1:86226128-86226147 None:intergenic 55.0%
GACGTGTGTTACGTTCAGGG+CGG - Chr1:86226170-86226189 MsG0180005052.01.T01:CDS 55.0%
GCAGGGGAAAAAGGTGAGGT+TGG - Chr1:86230699-86230718 MsG0180005052.01.T01:intron 55.0%
GGACGGGAAAAAAGTAGCGC+TGG - Chr1:86227853-86227872 MsG0180005052.01.T01:intron 55.0%
GGGGAAAAAGGTGAGGTTGG+TGG - Chr1:86230702-86230721 MsG0180005052.01.T01:intron 55.0%
TACGTTCAGGGCGGCAGTTA+TGG - Chr1:86226179-86226198 MsG0180005052.01.T01:CDS 55.0%
TCAGAGACTTCACAGACGCC+TGG + Chr1:86228312-86228331 None:intergenic 55.0%
TCCTGTAAACGGGTGGATGC+AGG - Chr1:86226973-86226992 MsG0180005052.01.T01:intron 55.0%
TCGGAGACGTTGGCAGAATC+CGG + Chr1:86226205-86226224 None:intergenic 55.0%
TGCCACGAGGCAAACCACAA+CGG - Chr1:86226111-86226130 MsG0180005052.01.T01:CDS 55.0%
! TTTGGAGTCGTCAAAGGCGG+TGG - Chr1:86226136-86226155 MsG0180005052.01.T01:CDS 55.0%
!! ACAACTCGGTTCGGCTCGTT+AGG + Chr1:86231145-86231164 None:intergenic 55.0%
CCCTGCATCCACCCGTTTAC+AGG + Chr1:86226977-86226996 None:intergenic 60.0%
CTCGTGGCAACCGATGGTGA+TGG + Chr1:86226100-86226119 None:intergenic 60.0%
CTGCCAACGTCTCCGACGAT+CGG - Chr1:86226209-86226228 MsG0180005052.01.T01:CDS 60.0%
GTTTGCCTCGTGGCAACCGA+TGG + Chr1:86226106-86226125 None:intergenic 60.0%
TTCAGGGCGGCAGTTATGGC+CGG - Chr1:86226183-86226202 MsG0180005052.01.T01:CDS 60.0%
! CACCGTTGTGGTTTGCCTCG+TGG + Chr1:86226116-86226135 None:intergenic 60.0%
! CATCACCATCGGTTGCCACG+AGG - Chr1:86226098-86226117 MsG0180005052.01.T01:CDS 60.0%
CCAACGTCTCCGACGATCGG+AGG - Chr1:86226212-86226231 MsG0180005052.01.T01:CDS 65.0%
CCTCCGATCGTCGGAGACGT+TGG + Chr1:86226215-86226234 None:intergenic 65.0%
GGAGTCGTCAAAGGCGGTGG+CGG - Chr1:86226139-86226158 MsG0180005052.01.T01:CDS 65.0%
!! AAAGGCGGTGGCGGAGACAC+CGG - Chr1:86226148-86226167 MsG0180005052.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 86226094 86231777 86226094 ID=MsG0180005052.01;Name=MsG0180005052.01
Chr1 mRNA 86226094 86231777 86226094 ID=MsG0180005052.01.T01;Parent=MsG0180005052.01;Name=MsG0180005052.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.5|0.33|1|1|1|3|0|674
Chr1 exon 86231316 86231777 86231316 ID=MsG0180005052.01.T01:exon:28414;Parent=MsG0180005052.01.T01
Chr1 exon 86229179 86230504 86229179 ID=MsG0180005052.01.T01:exon:28413;Parent=MsG0180005052.01.T01
Chr1 exon 86226094 86226330 86226094 ID=MsG0180005052.01.T01:exon:28412;Parent=MsG0180005052.01.T01
Chr1 CDS 86231316 86231777 86231316 ID=MsG0180005052.01.T01:cds;Parent=MsG0180005052.01.T01
Chr1 CDS 86229179 86230504 86229179 ID=MsG0180005052.01.T01:cds;Parent=MsG0180005052.01.T01
Chr1 CDS 86226094 86226330 86226094 ID=MsG0180005052.01.T01:cds;Parent=MsG0180005052.01.T01
Gene Sequence

>MsG0180005052.01.T01

ATGCCATCACCATCGGTTGCCACGAGGCAAACCACAACGGTGTTTGGAGTCGTCAAAGGCGGTGGCGGAGACACCGGACGTGTGTTACGTTCAGGGCGGCAGTTATGGCCGGATTCTGCCAACGTCTCCGACGATCGGAGGAAGAAACCGGCGAAGACAAACCTTCATAACGATGGCAGTGATAGGTTTTACGGGAAAGCTTATAGCAGAAAAAGGAAAAGAAACGTTGAAAACAACGAAAGTGAAATTTTCAGGATTCAACGACAAAGGATGAAGGATCCATGTAAGATTGCGGTTATTGTGAAACCTTGTTCTGAGGATATTGGTTTGTTTTCGTGTTTCTTATTTATGGTGTTGAGAACCGTTGTGATGTTCGGTCTCACATTCGAGGATCTCGCTGCTTTTGTTCTGTCAGAGCCTATTTGTTCTGTTTATGCATCAAGAGGGATACAATTCTTACAGGGTTCTGTTACTGCCAACGTTGGGATTTGCCAGTTTTTTGGGGTGACAAGGTTCATACCATTGTTTTGTGTAGATTTTTCTGCTGTTCCTCAATGTTTCACGTCTCTACATTCTGCAGTGGTTTTAAGATATATGTTCAGGTCATTTTTTCTTGCATGTAATCTGGTAAATGTTGCTATTGATATTGAAGACGGAGTTGATCTATCAGATTTTGAGATGGAACTGCAGATTTCATGTGATTCCTTCATGAAAGAAACTTCTGAGATTGAAAACATTAGTATCACCCCTGAAGTTATTGAAATAGACGGCGATTTATCTTTACATGAATCTGTCACATCTTCAAAGTTAGCTGGTCGAAATGGACAACGTCATAGCATGAACGCTCGACGCATTCAGATGAGGAGAACTTCACCTAGGATAAGGGAAGCTCAGAATCCTTCAACAAAGAACATGAGTAACAGCGAATTACCTTTTGATTCAAAGGGTGGACGGGAAAAAAGTAGCGCTGGTGTGGCCTCTAATAAGAAACCCAGACGTTTGACTAACAGTTGCACAAGTTTAAACCTTTTAGAGGCAAAGTCTGTCATGGATGATTCAAAAGAAGCAATTGATTCGTCTTTTTGTTCTGCAAATATATTGATTGTTGAGTCTGACAGGTGTTATAGGGTAGAAGGAGCAGTTGTTACTTCAGAAGAAACGCCCAAGTCAGGAGAATGGCATCTTGCAGTAAAGAAAGATGGGTTGACTCAATGCACCCTCAAGGCTGATAAGATAATGAGACCATGCTCTTCCAATAGGTACACCCATGTTAAAATGGTCTCATTAATCAATGGGTGGAAGCTAGAGTTTGCTAATCGTCAGAATTGGCTTGCCTTTAAGAATCTTTATAAGGAGTGTTCTGAACGCGAAATTCCAATTCCTGCTGCGAAATATATTCCAGTACCAGGCGTCTGTGAAGTCTCTGACTATGCAGACAGTTATACCGTTCCCTTCAATCGACCGGATTCTTATATATCCACAAATAGTGATGAGTTTTACAGAGCAATGACATGTAAAACGGCAATTTATGACATGGATTCAGGTGATGAAGATTGGGTGAGCAAGTTCAATAAAGAGTTTCAAGAACATGTTTCAGAGGATGATTTTGAATCAATTGTTGATGCTTTGGAGAAGACTTATCATTATAATCCAGATGACTGTTGTGATGAAAAAACTGTGATTTATTGGTGTAAGAATCTTGTTAGCAAGAAGGCTGTAGAAGCTGTACATGGTTATTGGATGAGAAAGCGGAAACATAATCATTCATCGCTGCTTAGGATTTTCCAGATGGATGTCGTGGAACTCACCCTGATCTATTCATTTACAGTAGCTGCTGAGGTCGAAGCAGCTAAAGCAGCTGCAAATGAATCAACGGAACTTGCGATACAAAAACGCAAAGAAGCTCAGTCGCTTGCAGAGAATGCAGATTTAGCAGTCTACAAGGCTACTATGTTAGTTAGAATGACTGAAGCAACTCAAGCTGGAGGATCTGTAGATGCATTGGCAGGACAGTTTCTTGATTGA
Protein sequence

>MsG0180005052.01.T01

MPSPSVATRQTTTVFGVVKGGGGDTGRVLRSGRQLWPDSANVSDDRRKKPAKTNLHNDGSDRFYGKAYSRKRKRNVENNESEIFRIQRQRMKDPCKIAVIVKPCSEDIGLFSCFLFMVLRTVVMFGLTFEDLAAFVLSEPICSVYASRGIQFLQGSVTANVGICQFFGVTRFIPLFCVDFSAVPQCFTSLHSAVVLRYMFRSFFLACNLVNVAIDIEDGVDLSDFEMELQISCDSFMKETSEIENISITPEVIEIDGDLSLHESVTSSKLAGRNGQRHSMNARRIQMRRTSPRIREAQNPSTKNMSNSELPFDSKGGREKSSAGVASNKKPRRLTNSCTSLNLLEAKSVMDDSKEAIDSSFCSANILIVESDRCYRVEGAVVTSEETPKSGEWHLAVKKDGLTQCTLKADKIMRPCSSNRYTHVKMVSLINGWKLEFANRQNWLAFKNLYKECSEREIPIPAAKYIPVPGVCEVSDYADSYTVPFNRPDSYISTNSDEFYRAMTCKTAIYDMDSGDEDWVSKFNKEFQEHVSEDDFESIVDALEKTYHYNPDDCCDEKTVIYWCKNLVSKKAVEAVHGYWMRKRKHNHSSLLRIFQMDVVELTLIYSFTVAAEVEAAKAAANESTELAIQKRKEAQSLAENADLAVYKATMLVRMTEATQAGGSVDALAGQFLD*