AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046930.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046930.01.T01 MTR_4g117370 89.781 274 6 1 1 252 1 274 9.84e-180 499
MsG0880046930.01.T01 MTR_8g469010 71.373 255 51 1 18 250 6 260 2.32e-132 379
MsG0880046930.01.T01 MTR_1g050472 69.804 255 55 1 18 250 6 260 9.98e-130 372
MsG0880046930.01.T01 MTR_0268s0080 70.196 255 54 1 18 250 6 260 1.82e-129 372
MsG0880046930.01.T01 MTR_7g029110 70.588 255 53 1 18 250 6 260 7.23e-123 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046930.01.T01 AT3G23580 72.993 274 52 1 1 252 1 274 7.12e-146 414
MsG0880046930.01.T01 AT3G27060 69.531 256 55 2 18 250 6 261 3.39e-122 353

Find 91 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTGGTATTATTAATT+AGG 0.100138 8:-80097317 MsG0880046930.01.T01:three_prime_UTR
ATGAATTTGTAATGTCTTTA+TGG 0.161576 8:-80097251 MsG0880046930.01.T01:three_prime_UTR
AAGCGGGTAACCACCAATTT+TGG 0.162037 8:+80097999 None:intergenic
TCAGCTTCTGTGCCATATTC+TGG 0.174738 8:-80098449 MsG0880046930.01.T01:intron
ATAAGTTCTTCTCCCAAAAT+TGG 0.201055 8:-80098012 MsG0880046930.01.T01:CDS
AAAAGGCTGAAGCCAGTTTC+TGG 0.208732 8:-80100397 MsG0880046930.01.T01:CDS
TCTTCCTTAACACAACAATA+TGG 0.218700 8:-80100546 MsG0880046930.01.T01:exon
ACACAACAATATGGGTTCTT+TGG 0.230504 8:-80100537 MsG0880046930.01.T01:exon
AAAGCTTCAAGTATCATTAA+TGG 0.276798 8:-80097423 MsG0880046930.01.T01:three_prime_UTR
TGATAGGCTCGGGCATTCTA+TGG 0.295173 8:-80099153 MsG0880046930.01.T01:intron
ATAGAGTAACTTGGCCGTTT+TGG 0.307198 8:+80097225 None:intergenic
CTAGCTGGTATTATTAATTA+GGG 0.309180 8:-80097316 MsG0880046930.01.T01:three_prime_UTR
TTGCCCTTTCAGGTTTCCTT+GGG 0.310825 8:-80097969 MsG0880046930.01.T01:CDS
TTTGCCCTTTCAGGTTTCCT+TGG 0.319161 8:-80097970 MsG0880046930.01.T01:CDS
GGGCATTGAGTTGGATTAAC+AGG 0.324433 8:-80098912 MsG0880046930.01.T01:intron
TCTGAATGATGTTCAAATTC+CGG 0.339797 8:-80099534 MsG0880046930.01.T01:CDS
AGCAACTTGTATCTTTGTTC+CGG 0.340309 8:-80100627 MsG0880046930.01.T01:five_prime_UTR
TACATCTGATGGAATCGTTT+TGG 0.341636 8:-80099576 MsG0880046930.01.T01:CDS
ATCCATCAATCCAACATCTT+TGG 0.346733 8:-80100655 None:intergenic
TGTGTTTGTTTCATTAGTAT+TGG 0.347617 8:+80100470 None:intergenic
AAAGTTGTTTGTAGCGAATA+GGG 0.351905 8:+80100432 None:intergenic
GCCCTCCCTTGTGCATTGAT+TGG 0.362088 8:-80098135 MsG0880046930.01.T01:CDS
AAGCTTCAAGTATCATTAAT+GGG 0.363977 8:-80097422 MsG0880046930.01.T01:three_prime_UTR
CAAAGTTGTTTGTAGCGAAT+AGG 0.369374 8:+80100431 None:intergenic
GTATGTACCGGTCCAGAAAC+TGG 0.373363 8:+80100385 None:intergenic
GAACCCATATTGTTGTGTTA+AGG 0.374875 8:+80100542 None:intergenic
ATTTGTCGCTGACAGGCTAT+TGG 0.379699 8:-80098080 MsG0880046930.01.T01:CDS
AGTTTAGCCTACACATATAT+AGG 0.389549 8:-80097345 MsG0880046930.01.T01:three_prime_UTR
CTTCCTTAACACAACAATAT+GGG 0.394042 8:-80100545 MsG0880046930.01.T01:exon
TCAGCGACAAATTTATGTAT+TGG 0.395442 8:+80098091 None:intergenic
GCAATCGAGAATATTCATTC+TGG 0.401015 8:-80099120 MsG0880046930.01.T01:intron
AAACCCTTTGCTCTGTTATC+CGG 0.401425 8:+80100608 None:intergenic
CAAAGTTCTTCCCATCATCT+TGG 0.402459 8:+80097490 None:intergenic
TATTCGCTACAAACAACTTT+GGG 0.404981 8:-80100429 MsG0880046930.01.T01:CDS
CTATTCGCTACAAACAACTT+TGG 0.419868 8:-80100430 MsG0880046930.01.T01:CDS
ACGTGGAAAATCCCTTTGAT+TGG 0.420885 8:-80097929 MsG0880046930.01.T01:exon
ACTTTGGGAGATGTACAAAA+AGG 0.422922 8:-80100414 MsG0880046930.01.T01:CDS
AATATGGGTTCTTTGGAGAA+TGG 0.457181 8:-80100530 MsG0880046930.01.T01:CDS
TATGTATTGGCTCATAAGCT+TGG 0.458646 8:+80098104 None:intergenic
TGGGATGATGGTGATGTATT+CGG 0.460995 8:-80097403 MsG0880046930.01.T01:three_prime_UTR
CGATAGAAAATAGAGTAACT+TGG 0.461578 8:+80097216 None:intergenic
TGTCTTTATGGCTGCCAAAA+CGG 0.464107 8:-80097239 MsG0880046930.01.T01:three_prime_UTR
TCTTCCTTGTGTTGCAAGGA+AGG 0.470108 8:-80098941 MsG0880046930.01.T01:CDS
AGGCTGAATGGGCATTGAGT+TGG 0.487477 8:-80098921 MsG0880046930.01.T01:CDS
TACATAAATTTGTCGCTGAC+AGG 0.487715 8:-80098087 MsG0880046930.01.T01:CDS
GGAAAATCCCTTTGATTGGA+TGG 0.494213 8:-80097925 MsG0880046930.01.T01:exon
AGTTCTTCTCCCAAAATTGG+TGG 0.505866 8:-80098009 MsG0880046930.01.T01:CDS
AATAAAGTCCATCCAATCAA+AGG 0.508574 8:+80097917 None:intergenic
GTTCCGGATAACAGAGCAAA+GGG 0.512669 8:-80100611 MsG0880046930.01.T01:five_prime_UTR
CTCCTATGATGTACAACACT+GGG 0.518556 8:-80099654 MsG0880046930.01.T01:CDS
AAGTATCATTAATGGGATGA+TGG 0.520186 8:-80097415 MsG0880046930.01.T01:three_prime_UTR
GGAACGCCGAAGAAAATAAG+AGG 0.521689 8:-80100509 MsG0880046930.01.T01:CDS
AGTTCTTCCCATCATCTTGG+AGG 0.524128 8:+80097493 None:intergenic
CACCCCAAGGAAACCTGAAA+GGG 0.530780 8:+80097966 None:intergenic
GTTCTGTTGTTCCATGACAT+TGG 0.532994 8:-80097275 MsG0880046930.01.T01:three_prime_UTR
GAGACAGCTAGATTTCGAAC+GGG 0.536560 8:-80098211 MsG0880046930.01.T01:CDS
ATAAAGTCCATCCAATCAAA+GGG 0.536591 8:+80097918 None:intergenic
TGCCCAGTGTTGTACATCAT+AGG 0.537246 8:+80099652 None:intergenic
AAGAAGATGATAAGAAGAAG+AGG 0.539364 8:+80100565 None:intergenic
ATGTCAAGCCTCCAAGATGA+TGG 0.539662 8:-80097501 MsG0880046930.01.T01:three_prime_UTR
AAAATCTTCCTTGTGTTGCA+AGG 0.541514 8:-80098945 MsG0880046930.01.T01:CDS
GTGTTGCAAGGAAGGCTGAA+TGG 0.543120 8:-80098933 MsG0880046930.01.T01:CDS
GCCAATCAATGCACAAGGGA+GGG 0.550023 8:+80098134 None:intergenic
TGTTGCAAGGAAGGCTGAAT+GGG 0.552298 8:-80098932 MsG0880046930.01.T01:CDS
ACAAATTCATGCCAATGTCA+TGG 0.564753 8:+80097264 None:intergenic
GTAATTACCTATATATGTGT+AGG 0.574932 8:+80097338 None:intergenic
TGAGACAGCTAGATTTCGAA+CGG 0.575367 8:-80098212 MsG0880046930.01.T01:CDS
ATATATAGGTAATTACTAGC+TGG 0.580629 8:-80097331 MsG0880046930.01.T01:three_prime_UTR
TCAGCCTTCCTTGCAACACA+AGG 0.584139 8:+80098937 None:intergenic
GCACCCCAAGGAAACCTGAA+AGG 0.585810 8:+80097965 None:intergenic
AGAGATGTATAGCTTGCTGT+TGG 0.591810 8:-80099019 MsG0880046930.01.T01:CDS
TGCCAATCAATGCACAAGGG+AGG 0.592084 8:+80098133 None:intergenic
TCTCCTATGATGTACAACAC+TGG 0.592747 8:-80099655 MsG0880046930.01.T01:CDS
TGCCCTTTCAGGTTTCCTTG+GGG 0.594621 8:-80097968 MsG0880046930.01.T01:CDS
AAGTTGGTTGACAGCTGAAG+AGG 0.595614 8:-80099684 MsG0880046930.01.T01:intron
GCTGAAGCCAGTTTCTGGAC+CGG 0.596341 8:-80100392 MsG0880046930.01.T01:intron
AACATGATTGAGCAGAGGAA+AGG 0.603731 8:-80097571 MsG0880046930.01.T01:intron
TTATAATTCCCATGTTACCA+AGG 0.603803 8:+80098031 None:intergenic
TGTCAAGCCTCCAAGATGAT+GGG 0.607267 8:-80097500 MsG0880046930.01.T01:three_prime_UTR
TGTTCCGGATAACAGAGCAA+AGG 0.611755 8:-80100612 MsG0880046930.01.T01:five_prime_UTR
TTCATGCCAATCAATGCACA+AGG 0.618751 8:+80098129 None:intergenic
TATGAAGTGCTTCTCAGAGT+CGG 0.621934 8:+80099622 None:intergenic
AAGGGTGGGTGATTATCAGA+AGG 0.633466 8:-80097532 MsG0880046930.01.T01:three_prime_UTR
GTGCTTCTCAGAGTCGGACA+AGG 0.636420 8:+80099628 None:intergenic
GAGGGCATCACAGACAAACT+CGG 0.641352 8:+80098152 None:intergenic
TCATTTGAGAATGTCAGACC+CGG 0.642175 8:+80098405 None:intergenic
GAATGATGTTCAAATTCCGG+AGG 0.652575 8:-80099531 MsG0880046930.01.T01:intron
GAGCTAATCTCTAGAGACGA+GGG 0.653908 8:-80098384 MsG0880046930.01.T01:CDS
TGAGCTAATCTCTAGAGACG+AGG 0.689131 8:-80098385 MsG0880046930.01.T01:CDS
TACTAATGAAACAAACACAG+AGG 0.751367 8:-80100466 MsG0880046930.01.T01:CDS
TCATGCCAATCAATGCACAA+GGG 0.758595 8:+80098130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTAAATCATATTAAAT+TGG - Chr8:80097673-80097692 MsG0880046930.01.T01:intron 10.0%
!! TTATTAAAATTGAATGATCA+AGG + Chr8:80098108-80098127 None:intergenic 15.0%
!!! CAATTGATTTATTTATTGAT+AGG - Chr8:80098646-80098665 MsG0880046930.01.T01:intron 15.0%
!!! GAAAAAATTAAATTGTTGTT+TGG + Chr8:80097644-80097663 None:intergenic 15.0%
!!! TAATGTTTTGATATTAGTTT+TGG - Chr8:80099543-80099562 MsG0880046930.01.T01:CDS 15.0%
!!! TTATGTTAATTCTTCTTTTA+AGG - Chr8:80098462-80098481 MsG0880046930.01.T01:intron 15.0%
!! AAAAGAAAAAATGTATGTAC+CGG + Chr8:80097445-80097464 None:intergenic 20.0%
!! AATAGTACAAAATTGAAGTT+TGG + Chr8:80097530-80097549 None:intergenic 20.0%
!! AATTTGTAATAGTAAAAGTC+TGG - Chr8:80098978-80098997 MsG0880046930.01.T01:CDS 20.0%
!! ATGAATTTGTAATGTCTTTA+TGG - Chr8:80100564-80100583 MsG0880046930.01.T01:five_prime_UTR 20.0%
!!! AACTTTTGAAAAAGAAACAA+GGG + Chr8:80099285-80099304 None:intergenic 20.0%
!!! ACTTTTTCATTCATTAGTTT+TGG - Chr8:80099501-80099520 MsG0880046930.01.T01:intron 20.0%
!!! TCAATTTTAATAACTGAAGT+TGG - Chr8:80098115-80098134 MsG0880046930.01.T01:CDS 20.0%
!!! TCTTGAAAAAATATTGACTT+AGG - Chr8:80099983-80100002 MsG0880046930.01.T01:intron 20.0%
!!! TTAATTTTCGTAGTACTTTT+TGG - Chr8:80098491-80098510 MsG0880046930.01.T01:intron 20.0%
!!! TTTTGAATGTATTTTGAAGA+TGG - Chr8:80097929-80097948 MsG0880046930.01.T01:exon 20.0%
! AAAGCTTCAAGTATCATTAA+TGG - Chr8:80100392-80100411 MsG0880046930.01.T01:intron 25.0%
! AAGCTTCAAGTATCATTAAT+GGG - Chr8:80100393-80100412 MsG0880046930.01.T01:CDS 25.0%
! AAGGCAAAAATGATAAATCT+CGG - Chr8:80099074-80099093 MsG0880046930.01.T01:intron 25.0%
! AAGTAGTATGTGAAACTAAT+CGG + Chr8:80098372-80098391 None:intergenic 25.0%
! ACTAGCTGGTATTATTAATT+AGG - Chr8:80100498-80100517 MsG0880046930.01.T01:CDS 25.0%
! ATATATAGGTAATTACTAGC+TGG - Chr8:80100484-80100503 MsG0880046930.01.T01:CDS 25.0%
! ATCATGTACCAAAAATTGAT+TGG - Chr8:80099005-80099024 MsG0880046930.01.T01:CDS 25.0%
! ATTGAATGATCAAGGTAAAA+AGG + Chr8:80098100-80098119 None:intergenic 25.0%
! ATTTATTTATTGATAGGCTC+GGG - Chr8:80098652-80098671 MsG0880046930.01.T01:intron 25.0%
! CAAAAATAAAACCACAAATC+AGG + Chr8:80098774-80098793 None:intergenic 25.0%
! CAAACCATAATTGAAAAGAA+GGG + Chr8:80099343-80099362 None:intergenic 25.0%
! CTAGCTGGTATTATTAATTA+GGG - Chr8:80100499-80100518 MsG0880046930.01.T01:CDS 25.0%
! GAAATATTATGATAAGGAAG+AGG + Chr8:80098743-80098762 None:intergenic 25.0%
! GATTTATTTATTGATAGGCT+CGG - Chr8:80098651-80098670 MsG0880046930.01.T01:intron 25.0%
! GTAATTACCTATATATGTGT+AGG + Chr8:80100480-80100499 None:intergenic 25.0%
! TAGATGACAGAGAAAAATAA+TGG + Chr8:80097491-80097510 None:intergenic 25.0%
! TATCCAATCACATAATACAA+TGG - Chr8:80100207-80100226 MsG0880046930.01.T01:intron 25.0%
! TCAATTATAGTTTCCAAAAG+TGG + Chr8:80098041-80098060 None:intergenic 25.0%
! TGTGTTTGTTTCATTAGTAT+TGG + Chr8:80097348-80097367 None:intergenic 25.0%
! TTACTATTACAAATTGCAAC+AGG + Chr8:80098973-80098992 None:intergenic 25.0%
!! AATTTTCAGTGAAAGATTAG+AGG - Chr8:80097877-80097896 MsG0880046930.01.T01:intron 25.0%
!! ATTTTATTCATCCCTTTCTT+TGG - Chr8:80097547-80097566 MsG0880046930.01.T01:three_prime_UTR 25.0%
!! GAAAAATAATGGAAAAACAG+AGG + Chr8:80097480-80097499 None:intergenic 25.0%
!! TAGTGCAGTTATCTTTTAAA+GGG - Chr8:80099107-80099126 MsG0880046930.01.T01:intron 25.0%
!! TATTAAATTGGTTTCTCTGA+AGG - Chr8:80097685-80097704 MsG0880046930.01.T01:intron 25.0%
!! TGAGATATTTTCCAAAGAAA+GGG + Chr8:80097561-80097580 None:intergenic 25.0%
!! TTAGTGCAGTTATCTTTTAA+AGG - Chr8:80099106-80099125 MsG0880046930.01.T01:intron 25.0%
!! TTGAGATATTTTCCAAAGAA+AGG + Chr8:80097562-80097581 None:intergenic 25.0%
!! TTTCCACGTTGTAAATTTTT+AGG + Chr8:80099875-80099894 None:intergenic 25.0%
!!! ATCAATTTTTGGTACATGAT+AGG + Chr8:80099005-80099024 None:intergenic 25.0%
!!! ATTAGTTTTGGATGATTCAA+TGG - Chr8:80099555-80099574 MsG0880046930.01.T01:CDS 25.0%
!!! ATTTATCATTTTTGCCTTTC+TGG + Chr8:80099072-80099091 None:intergenic 25.0%
!!! CAAAAATTGATTGGTTTGAT+GGG - Chr8:80099014-80099033 MsG0880046930.01.T01:CDS 25.0%
!!! CAACTTTTGAAAAAGAAACA+AGG + Chr8:80099286-80099305 None:intergenic 25.0%
!!! GTTAATTCTTCTTTTAAGGA+TGG - Chr8:80098466-80098485 MsG0880046930.01.T01:intron 25.0%
!!! TCAATTTTTGGTACATGATA+GGG + Chr8:80099004-80099023 None:intergenic 25.0%
!!! TCTTTGGTTTTATTCATATG+TGG - Chr8:80098598-80098617 MsG0880046930.01.T01:intron 25.0%
AAAGTTGTTTGTAGCGAATA+GGG + Chr8:80097386-80097405 None:intergenic 30.0%
AAGAAGATGATAAGAAGAAG+AGG + Chr8:80097253-80097272 None:intergenic 30.0%
AAGCCATTGTATTATGTGAT+TGG + Chr8:80100213-80100232 None:intergenic 30.0%
AAGTATCATTAATGGGATGA+TGG - Chr8:80100400-80100419 MsG0880046930.01.T01:CDS 30.0%
AATAAAGTCCATCCAATCAA+AGG + Chr8:80099901-80099920 None:intergenic 30.0%
AATAGCTTCTCATAATGCAT+GGG - Chr8:80099149-80099168 MsG0880046930.01.T01:CDS 30.0%
AGGGGAGAAATATTATGATA+AGG + Chr8:80098749-80098768 None:intergenic 30.0%
AGTTTAGCCTACACATATAT+AGG - Chr8:80100470-80100489 MsG0880046930.01.T01:CDS 30.0%
ATAAAGTCCATCCAATCAAA+GGG + Chr8:80099900-80099919 None:intergenic 30.0%
ATAAGTTCTTCTCCCAAAAT+TGG - Chr8:80099803-80099822 MsG0880046930.01.T01:intron 30.0%
ATATTATGATAAGGAAGAGG+AGG + Chr8:80098740-80098759 None:intergenic 30.0%
CAATTGTTAAAAGTTAACCC+AGG + Chr8:80098632-80098651 None:intergenic 30.0%
CGATAGAAAATAGAGTAACT+TGG + Chr8:80100602-80100621 None:intergenic 30.0%
CTTCCTTAACACAACAATAT+GGG - Chr8:80097270-80097289 MsG0880046930.01.T01:three_prime_UTR 30.0%
GAAACTAATCGGTAAATTGA+GGG + Chr8:80098361-80098380 None:intergenic 30.0%
GAACAAACAATCAAAAGACA+AGG + Chr8:80098553-80098572 None:intergenic 30.0%
GAATGATAAAACAGATGTAG+TGG + Chr8:80099965-80099984 None:intergenic 30.0%
GCAAACCATAATTGAAAAGA+AGG + Chr8:80099344-80099363 None:intergenic 30.0%
GGCAAACTAGTTAAGTAAAT+AGG + Chr8:80099322-80099341 None:intergenic 30.0%
GTGTTTGTATCATGAAATAC+AGG + Chr8:80100014-80100033 None:intergenic 30.0%
TAAAAAGAGAGGATTAATGC+CGG - Chr8:80099391-80099410 MsG0880046930.01.T01:intron 30.0%
TAATAGCTTCTCATAATGCA+TGG - Chr8:80099148-80099167 MsG0880046930.01.T01:CDS 30.0%
TACTAATGAAACAAACACAG+AGG - Chr8:80097349-80097368 MsG0880046930.01.T01:three_prime_UTR 30.0%
TATTCGCTACAAACAACTTT+GGG - Chr8:80097386-80097405 MsG0880046930.01.T01:three_prime_UTR 30.0%
TCAGCGACAAATTTATGTAT+TGG + Chr8:80099727-80099746 None:intergenic 30.0%
TCTGAATGATGTTCAAATTC+CGG - Chr8:80098281-80098300 MsG0880046930.01.T01:intron 30.0%
TCTTCCTTAACACAACAATA+TGG - Chr8:80097269-80097288 MsG0880046930.01.T01:three_prime_UTR 30.0%
TGAAACTAATCGGTAAATTG+AGG + Chr8:80098362-80098381 None:intergenic 30.0%
TTAACATAAAGTACAGCCTA+AGG + Chr8:80098451-80098470 None:intergenic 30.0%
TTATAATTCCCATGTTACCA+AGG + Chr8:80099787-80099806 None:intergenic 30.0%
TTTGATGAGATTCTGATGAA+TGG - Chr8:80097965-80097984 MsG0880046930.01.T01:CDS 30.0%
! AAAATGTTTTCGTTTTGCCT+TGG - Chr8:80099767-80099786 MsG0880046930.01.T01:intron 30.0%
! AAAGACAAGGTGCTAAAATA+AGG + Chr8:80098540-80098559 None:intergenic 30.0%
! AACAGATGTAGTGGAATAAA+TGG + Chr8:80099956-80099975 None:intergenic 30.0%
! AGAGACACTAATTTGTGTAA+AGG + Chr8:80097718-80097737 None:intergenic 30.0%
! CCATCAAACCAATCAATTTT+TGG + Chr8:80099016-80099035 None:intergenic 30.0%
! TTTGCCCTTCTTTTCAATTA+TGG - Chr8:80099336-80099355 MsG0880046930.01.T01:intron 30.0%
!! AGTTTGTTAGAACAACAATC+TGG - Chr8:80097763-80097782 MsG0880046930.01.T01:intron 30.0%
!! ATATTCTGGCTTAAAAAGAG+AGG - Chr8:80099380-80099399 MsG0880046930.01.T01:intron 30.0%
!! CCAAAAATTGATTGGTTTGA+TGG - Chr8:80099013-80099032 MsG0880046930.01.T01:CDS 30.0%
!! TCTCTTTTTAAGCCAGAATA+TGG + Chr8:80099381-80099400 None:intergenic 30.0%
!!! TCTTCTCCTCTTATTTTCTT+CGG + Chr8:80097315-80097334 None:intergenic 30.0%
!!! TGATTTGTTTTGCTTCTCTT+TGG - Chr8:80098582-80098601 MsG0880046930.01.T01:intron 30.0%
AAAAAGAGAGGATTAATGCC+GGG - Chr8:80099392-80099411 MsG0880046930.01.T01:intron 35.0%
AAAATCTTCCTTGTGTTGCA+AGG - Chr8:80098870-80098889 MsG0880046930.01.T01:intron 35.0%
AAAGGGCAAAAAAGAAAAGC+GGG + Chr8:80099835-80099854 None:intergenic 35.0%
AATCTGATGTTGTACACCTT+AGG - Chr8:80098432-80098451 MsG0880046930.01.T01:CDS 35.0%
AATGCTTAAAACACTACCTC+CGG + Chr8:80098303-80098322 None:intergenic 35.0%
ACAAATTCATGCCAATGTCA+TGG + Chr8:80100554-80100573 None:intergenic 35.0%
ACACAACAATATGGGTTCTT+TGG - Chr8:80097278-80097297 MsG0880046930.01.T01:three_prime_UTR 35.0%
AGCAACTTGTATCTTTGTTC+CGG - Chr8:80097188-80097207 MsG0880046930.01.T01:three_prime_UTR 35.0%
ATAAAACCACAAATCAGGCA+AGG + Chr8:80098769-80098788 None:intergenic 35.0%
ATAAATTGAAGACTGAGCAG+TGG - Chr8:80098409-80098428 MsG0880046930.01.T01:CDS 35.0%
CAAAGTTGTTTGTAGCGAAT+AGG + Chr8:80097387-80097406 None:intergenic 35.0%
CATGCTATACAGGTAGTATT+TGG - Chr8:80099475-80099494 MsG0880046930.01.T01:intron 35.0%
CTATGAATAAACTGCCAAGT+AGG - Chr8:80098947-80098966 MsG0880046930.01.T01:CDS 35.0%
CTATTCGCTACAAACAACTT+TGG - Chr8:80097385-80097404 MsG0880046930.01.T01:three_prime_UTR 35.0%
GAAAGGGCAAAAAAGAAAAG+CGG + Chr8:80099836-80099855 None:intergenic 35.0%
GAACCCATATTGTTGTGTTA+AGG + Chr8:80097276-80097295 None:intergenic 35.0%
GACAATGAACACATGATGTT+TGG - Chr8:80097815-80097834 MsG0880046930.01.T01:intron 35.0%
GCAAAACAAATCACAACTCT+AGG + Chr8:80098575-80098594 None:intergenic 35.0%
GCAATCGAGAATATTCATTC+TGG - Chr8:80098695-80098714 MsG0880046930.01.T01:intron 35.0%
GTGAAAGATTAGAGGATTTC+CGG - Chr8:80097885-80097904 MsG0880046930.01.T01:intron 35.0%
GTGCCTAAAAATTTACAACG+TGG - Chr8:80099869-80099888 MsG0880046930.01.T01:intron 35.0%
GTTTCACATACTACTTGCTT+TGG - Chr8:80098376-80098395 MsG0880046930.01.T01:CDS 35.0%
TAAAACCACAAATCAGGCAA+GGG + Chr8:80098768-80098787 None:intergenic 35.0%
TACATAAATTTGTCGCTGAC+AGG - Chr8:80099728-80099747 MsG0880046930.01.T01:intron 35.0%
TCCATCAGATGTAGCAAAAA+AGG + Chr8:80098232-80098251 None:intergenic 35.0%
TTATAGTTTCCAAAAGTGGC+TGG + Chr8:80098037-80098056 None:intergenic 35.0%
! AAGGGATATTTTTCTCAGGA+AGG - Chr8:80099222-80099241 MsG0880046930.01.T01:intron 35.0%
! AATATGGGTTCTTTGGAGAA+TGG - Chr8:80097285-80097304 MsG0880046930.01.T01:three_prime_UTR 35.0%
! ACTTTGGGAGATGTACAAAA+AGG - Chr8:80097401-80097420 MsG0880046930.01.T01:three_prime_UTR 35.0%
! ATTTTGCTTGCATGCTATAC+AGG - Chr8:80099465-80099484 MsG0880046930.01.T01:intron 35.0%
! GTTGAAGGGATATTTTTCTC+AGG - Chr8:80099218-80099237 MsG0880046930.01.T01:intron 35.0%
! TACATCTGATGGAATCGTTT+TGG - Chr8:80098239-80098258 MsG0880046930.01.T01:intron 35.0%
!! CTTTTCTTTTTTGCCCTTTC+AGG - Chr8:80099836-80099855 MsG0880046930.01.T01:intron 35.0%
!! GTTTTGGATGACGTTGTATA+AGG - Chr8:80099517-80099536 MsG0880046930.01.T01:intron 35.0%
!! TATGTATTGGCTCATAAGCT+TGG + Chr8:80099714-80099733 None:intergenic 35.0%
!!! AACTTTTTTGAGAGAAGGGT+GGG - Chr8:80100269-80100288 MsG0880046930.01.T01:intron 35.0%
!!! CTTTGTTTTCAAGCTTGATG+AGG - Chr8:80100343-80100362 MsG0880046930.01.T01:intron 35.0%
!!! TGGAATCGTTTTGGAGAATT+TGG - Chr8:80098248-80098267 MsG0880046930.01.T01:intron 35.0%
AAAACCACAAATCAGGCAAG+GGG + Chr8:80098767-80098786 None:intergenic 40.0%
AAACCCTTTGCTCTGTTATC+CGG + Chr8:80097210-80097229 None:intergenic 40.0%
AACATGATTGAGCAGAGGAA+AGG - Chr8:80100244-80100263 MsG0880046930.01.T01:intron 40.0%
AATGATAAATCTCGGCGTTC+TGG - Chr8:80099082-80099101 MsG0880046930.01.T01:intron 40.0%
ACGTGGAAAATCCCTTTGAT+TGG - Chr8:80099886-80099905 MsG0880046930.01.T01:intron 40.0%
AGTTCTTCTCCCAAAATTGG+TGG - Chr8:80099806-80099825 MsG0880046930.01.T01:intron 40.0%
CAAAGTTCTTCCCATCATCT+TGG + Chr8:80100328-80100347 None:intergenic 40.0%
CACCCTTCTCTCAAAAAAGT+TGG + Chr8:80100270-80100289 None:intergenic 40.0%
CAGATGTAGCAAAAAAGGCA+AGG + Chr8:80098227-80098246 None:intergenic 40.0%
CTCCTATGATGTACAACACT+GGG - Chr8:80098161-80098180 MsG0880046930.01.T01:CDS 40.0%
GAATGATGTTCAAATTCCGG+AGG - Chr8:80098284-80098303 MsG0880046930.01.T01:intron 40.0%
GGAAAATCCCTTTGATTGGA+TGG - Chr8:80099890-80099909 MsG0880046930.01.T01:intron 40.0%
GTTCTGTTGTTCCATGACAT+TGG - Chr8:80100540-80100559 MsG0880046930.01.T01:exon 40.0%
TATGCAACATGATTGAGCAG+AGG - Chr8:80100239-80100258 MsG0880046930.01.T01:intron 40.0%
TCATGCCAATCAATGCACAA+GGG + Chr8:80099688-80099707 None:intergenic 40.0%
TCATTTGAGAATGTCAGACC+CGG + Chr8:80099413-80099432 None:intergenic 40.0%
TCTCCTATGATGTACAACAC+TGG - Chr8:80098160-80098179 MsG0880046930.01.T01:CDS 40.0%
TGAGACAGCTAGATTTCGAA+CGG - Chr8:80099603-80099622 MsG0880046930.01.T01:CDS 40.0%
TGTCTTTATGGCTGCCAAAA+CGG - Chr8:80100576-80100595 MsG0880046930.01.T01:five_prime_UTR 40.0%
TTCAAAAGACACTCTGCAGT+CGG + Chr8:80097859-80097878 None:intergenic 40.0%
TTCATGCCAATCAATGCACA+AGG + Chr8:80099689-80099708 None:intergenic 40.0%
! ACAGAGCAAAGGGTTTTTGA+AGG - Chr8:80097214-80097233 MsG0880046930.01.T01:three_prime_UTR 40.0%
! ATAGAGTAACTTGGCCGTTT+TGG + Chr8:80100593-80100612 None:intergenic 40.0%
! CAGAGCAAAGGGTTTTTGAA+GGG - Chr8:80097215-80097234 MsG0880046930.01.T01:three_prime_UTR 40.0%
! TATGAAGTGCTTCTCAGAGT+CGG + Chr8:80098196-80098215 None:intergenic 40.0%
! TGGGATGATGGTGATGTATT+CGG - Chr8:80100412-80100431 MsG0880046930.01.T01:CDS 40.0%
!! AGAGATGTATAGCTTGCTGT+TGG - Chr8:80098796-80098815 MsG0880046930.01.T01:intron 40.0%
!! CATGTGTTCAAGTTGTACAC+CGG + Chr8:80097907-80097926 None:intergenic 40.0%
!! GTAAATTTTTAGGCACCCCA+AGG + Chr8:80099865-80099884 None:intergenic 40.0%
!! TCGTTTTGCCTTGGTAACAT+GGG - Chr8:80099776-80099795 MsG0880046930.01.T01:intron 40.0%
!! TTCGTTTTGCCTTGGTAACA+TGG - Chr8:80099775-80099794 MsG0880046930.01.T01:intron 40.0%
!! TTGGCTTTGCATGTGTTGAA+GGG - Chr8:80099204-80099223 MsG0880046930.01.T01:intron 40.0%
!! TTTTGGAGAATTTGGCTGCA+AGG - Chr8:80098256-80098275 MsG0880046930.01.T01:intron 40.0%
!!! AGGCCAACTTTTTTGAGAGA+AGG - Chr8:80100264-80100283 MsG0880046930.01.T01:intron 40.0%
!!! CAACTTTTTTGAGAGAAGGG+TGG - Chr8:80100268-80100287 MsG0880046930.01.T01:intron 40.0%
!!! GCCTTTTTTGCTACATCTGA+TGG - Chr8:80098228-80098247 MsG0880046930.01.T01:intron 40.0%
!!! GGCCAACTTTTTTGAGAGAA+GGG - Chr8:80100265-80100284 MsG0880046930.01.T01:intron 40.0%
AAAAGGCTGAAGCCAGTTTC+TGG - Chr8:80097418-80097437 MsG0880046930.01.T01:three_prime_UTR 45.0%
AAGGGTGGGTGATTATCAGA+AGG - Chr8:80100283-80100302 MsG0880046930.01.T01:intron 45.0%
AAGTCTCTCCGCAAATGAAG+TGG + Chr8:80099183-80099202 None:intergenic 45.0%
AGTTCTTCCCATCATCTTGG+AGG + Chr8:80100325-80100344 None:intergenic 45.0%
ATACACTGGCAACACCAGAA+AGG - Chr8:80099055-80099074 MsG0880046930.01.T01:intron 45.0%
ATGTCAAGCCTCCAAGATGA+TGG - Chr8:80100314-80100333 MsG0880046930.01.T01:intron 45.0%
ATTTGTCGCTGACAGGCTAT+TGG - Chr8:80099735-80099754 MsG0880046930.01.T01:intron 45.0%
CAAATTGCAACAGGCCTACT+TGG + Chr8:80098964-80098983 None:intergenic 45.0%
CGGTGTACAACTTGAACACA+TGG - Chr8:80097905-80097924 MsG0880046930.01.T01:intron 45.0%
CTGCAGTTCCACTTCATTTG+CGG - Chr8:80099172-80099191 MsG0880046930.01.T01:intron 45.0%
GAGACAGCTAGATTTCGAAC+GGG - Chr8:80099604-80099623 MsG0880046930.01.T01:CDS 45.0%
GGAACGCCGAAGAAAATAAG+AGG - Chr8:80097306-80097325 MsG0880046930.01.T01:three_prime_UTR 45.0%
GTTCCGGATAACAGAGCAAA+GGG - Chr8:80097204-80097223 MsG0880046930.01.T01:three_prime_UTR 45.0%
TCAGCTTCTGTGCCATATTC+TGG - Chr8:80099366-80099385 MsG0880046930.01.T01:intron 45.0%
TCATTTGCGGAGAGACTTGT+TGG - Chr8:80099185-80099204 MsG0880046930.01.T01:intron 45.0%
TCTTCCTTGTGTTGCAAGGA+AGG - Chr8:80098874-80098893 MsG0880046930.01.T01:intron 45.0%
TGCCCAGTGTTGTACATCAT+AGG + Chr8:80098166-80098185 None:intergenic 45.0%
TGTCAAGCCTCCAAGATGAT+GGG - Chr8:80100315-80100334 MsG0880046930.01.T01:intron 45.0%
TGTTCCGGATAACAGAGCAA+AGG - Chr8:80097203-80097222 MsG0880046930.01.T01:three_prime_UTR 45.0%
TGTTGCAAGGAAGGCTGAAT+GGG - Chr8:80098883-80098902 MsG0880046930.01.T01:intron 45.0%
! AAGCGGGTAACCACCAATTT+TGG + Chr8:80099819-80099838 None:intergenic 45.0%
! AAGTTGGTTGACAGCTGAAG+AGG - Chr8:80098131-80098150 MsG0880046930.01.T01:CDS 45.0%
! AGCGGGTAACCACCAATTTT+GGG + Chr8:80099818-80099837 None:intergenic 45.0%
! GAGCTAATCTCTAGAGACGA+GGG - Chr8:80099431-80099450 MsG0880046930.01.T01:intron 45.0%
! TGAGCTAATCTCTAGAGACG+AGG - Chr8:80099430-80099449 MsG0880046930.01.T01:intron 45.0%
!! GGGCATTGAGTTGGATTAAC+AGG - Chr8:80098903-80098922 MsG0880046930.01.T01:intron 45.0%
!! GTTGGCTTTGCATGTGTTGA+AGG - Chr8:80099203-80099222 MsG0880046930.01.T01:intron 45.0%
!! TTGCCCTTTCAGGTTTCCTT+GGG - Chr8:80099846-80099865 MsG0880046930.01.T01:intron 45.0%
!! TTTCCAAAAGTGGCTGGCTT+TGG + Chr8:80098031-80098050 None:intergenic 45.0%
!! TTTGCCCTTTCAGGTTTCCT+TGG - Chr8:80099845-80099864 MsG0880046930.01.T01:intron 45.0%
!!! CTGGTGTTGCCAGTGTATTT+TGG + Chr8:80099053-80099072 None:intergenic 45.0%
CACCCCAAGGAAACCTGAAA+GGG + Chr8:80099852-80099871 None:intergenic 50.0%
CATATGTGGCAGCACTTCCT+GGG - Chr8:80098612-80098631 MsG0880046930.01.T01:intron 50.0%
CTGTCTCAGTAACAAGCTGC+AGG + Chr8:80099591-80099610 None:intergenic 50.0%
GCCAATCAATGCACAAGGGA+GGG + Chr8:80099684-80099703 None:intergenic 50.0%
GTGTTGCAAGGAAGGCTGAA+TGG - Chr8:80098882-80098901 MsG0880046930.01.T01:intron 50.0%
TCAGCCTTCCTTGCAACACA+AGG + Chr8:80098881-80098900 None:intergenic 50.0%
TCATATGTGGCAGCACTTCC+TGG - Chr8:80098611-80098630 MsG0880046930.01.T01:intron 50.0%
TGATAGGCTCGGGCATTCTA+TGG - Chr8:80098662-80098681 MsG0880046930.01.T01:intron 50.0%
TGCCAATCAATGCACAAGGG+AGG + Chr8:80099685-80099704 None:intergenic 50.0%
! GTATGTACCGGTCCAGAAAC+TGG + Chr8:80097433-80097452 None:intergenic 50.0%
! TTCTCCCCTTGCCTGATTTG+TGG - Chr8:80098760-80098779 MsG0880046930.01.T01:intron 50.0%
!! AGGCTGAATGGGCATTGAGT+TGG - Chr8:80098894-80098913 MsG0880046930.01.T01:intron 50.0%
!! GAGGGCATCACAGACAAACT+CGG + Chr8:80099666-80099685 None:intergenic 50.0%
!! TGCCCTTTCAGGTTTCCTTG+GGG - Chr8:80099847-80099866 MsG0880046930.01.T01:intron 50.0%
!! TTGCCAAAGCCAGCCACTTT+TGG - Chr8:80098025-80098044 MsG0880046930.01.T01:CDS 50.0%
!!! GTTGCCAGTGTATTTTGGCC+TGG + Chr8:80099048-80099067 None:intergenic 50.0%
CCTGCCAGGCCAAAATACAC+TGG - Chr8:80099041-80099060 MsG0880046930.01.T01:intron 55.0%
GCACCCCAAGGAAACCTGAA+AGG + Chr8:80099853-80099872 None:intergenic 55.0%
GTGCTTCTCAGAGTCGGACA+AGG + Chr8:80098190-80098209 None:intergenic 55.0%
! GCCCTCCCTTGTGCATTGAT+TGG - Chr8:80099680-80099699 MsG0880046930.01.T01:intron 55.0%
! GCTGAAGCCAGTTTCTGGAC+CGG - Chr8:80097423-80097442 MsG0880046930.01.T01:three_prime_UTR 55.0%
!!! CCAGTGTATTTTGGCCTGGC+AGG + Chr8:80099044-80099063 None:intergenic 55.0%
!!! TGTATTTTGGCCTGGCAGGC+TGG + Chr8:80099040-80099059 None:intergenic 55.0%
CACTCTGCAGTCGGAGACGT+AGG + Chr8:80097850-80097869 None:intergenic 60.0%
! GTTTGATGGGCCAGCCTGCC+AGG - Chr8:80099027-80099046 MsG0880046930.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 80097175 80100662 80097175 ID=MsG0880046930.01;Name=MsG0880046930.01
Chr8 mRNA 80097175 80100662 80097175 ID=MsG0880046930.01.T01;Parent=MsG0880046930.01;Name=MsG0880046930.01.T01;_AED=0.37;_eAED=0.37;_QI=113|0.83|1|1|0.83|0.71|7|428|306
Chr8 exon 80097175 80097578 80097175 ID=MsG0880046930.01.T01:exon:34536;Parent=MsG0880046930.01.T01
Chr8 exon 80097909 80098242 80097909 ID=MsG0880046930.01.T01:exon:34535;Parent=MsG0880046930.01.T01
Chr8 exon 80098351 80098467 80098351 ID=MsG0880046930.01.T01:exon:34534;Parent=MsG0880046930.01.T01
Chr8 exon 80098913 80099039 80098913 ID=MsG0880046930.01.T01:exon:34533;Parent=MsG0880046930.01.T01
Chr8 exon 80099121 80099169 80099121 ID=MsG0880046930.01.T01:exon:34532;Parent=MsG0880046930.01.T01
Chr8 exon 80099532 80099692 80099532 ID=MsG0880046930.01.T01:exon:34531;Parent=MsG0880046930.01.T01
Chr8 exon 80100393 80100662 80100393 ID=MsG0880046930.01.T01:exon:34530;Parent=MsG0880046930.01.T01
Chr8 five_prime_UTR 80100550 80100662 80100550 ID=MsG0880046930.01.T01:five_prime_utr;Parent=MsG0880046930.01.T01
Chr8 CDS 80100393 80100549 80100393 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 CDS 80099532 80099692 80099532 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 CDS 80099121 80099169 80099121 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 CDS 80098913 80099039 80098913 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 CDS 80098351 80098467 80098351 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 CDS 80097933 80098242 80097933 ID=MsG0880046930.01.T01:cds;Parent=MsG0880046930.01.T01
Chr8 three_prime_UTR 80097909 80097932 80097909 ID=MsG0880046930.01.T01:three_prime_utr;Parent=MsG0880046930.01.T01
Chr8 three_prime_UTR 80097175 80097578 80097175 ID=MsG0880046930.01.T01:three_prime_utr;Parent=MsG0880046930.01.T01
Gene Sequence

>MsG0880046930.01.T01

ATGGGTTCTTTGGAGAATGGAACGCCGAAGAAAATAAGAGGAGAAGAAGAAGAAGAACCAATACTAATGAAACAAACACAGAGGTTTTGTATGTTCCCTATTCGCTACAAACAACTTTGGGAGATGTACAAAAAGGCTGAAGCCAGTTTCTGGACCGCTGAAGAGGTCGATCTCTCCTATGATGTACAACACTGGGCAACCTTGTCCGACTCTGAGAAGCACTTCATATCACATGTCCTTGCCTTTTTTGCTACATCTGATGGAATCGTTTTGGAGAATTTGGCTGCAAGGTTTCTGAATGATGTTCAAATTCCGGAGGCTCGGGCATTCTATGGATTTCAGATAGCAATCGAGAATATTCATTCTGAGATGTATAGCTTGCTGTTGGAGACGTACATCAAAGATTCTAGAGAGAAACATAAATTATTCAATGCAATTGAAAATCTTCCTTGTGTTGCAAGGAAGGCTGAATGGGCATTGAGTTGGATTAACAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGAGGATTAATGCCGGGTCTGACATTCTCAAATGAGCTAATCTCTAGAGACGAGGGTCTTCACTGCGATTTTGCTTGCATGCTATACAGCTTGTTACTGAGACAGCTAGATTTCGAACGGGTTCAAAATATTGTACACGAAGCTGTTGAAATTGAAACCGAGTTTGTCTGTGATGCCCTCCCTTGTGCATTGATTGGCATGAACTCCAAGCTTATGAGCCAATACATAAATTTGTCGCTGACAGGCTATTGGTATGACAATAAAATGTTTTCGTTTTGCCTTGGTAACATGGGAATTATAAGTTCTTCTCCCAAAATTGGTGGTTACCCGCTTTTCTTTTTTGCCCTTTCAGGTTTCCTTGGGGTGCCTAAAAATTTACAACGTGGAAAATCCCTTTGA

Protein sequence

>MsG0880046930.01.T01

MGSLENGTPKKIRGEEEEEPILMKQTQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWATLSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLYSLLLRQLDFERVQNIVHEAVEIETEFVCDALPCALIGMNSKLMSQYINLSLTGYWYDNKMFSFCLGNMGIISSSPKIGGYPLFFFALSGFLGVPKNLQRGKSL*