AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015459.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015459.01.T01 MTR_3g070400 95.025 201 8 1 1 199 1 201 7.85e-131 370
MsG0380015459.01.T01 MTR_2g102800 39.594 197 96 5 24 202 9 200 2.64e-30 120
MsG0380015459.01.T01 MTR_4g011440 39.791 191 89 6 24 194 10 194 3.54e-28 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015459.01.T01 AT2G40095 57.561 205 66 6 14 204 1 198 4.55e-67 207
MsG0380015459.01.T01 AT2G40095 58.974 195 59 6 14 194 1 188 1.91e-66 206
MsG0380015459.01.T01 AT2G40095 58.974 195 59 6 14 194 1 188 1.91e-66 206
MsG0380015459.01.T01 AT3G55880 59.596 198 60 6 14 194 1 195 7.11e-61 191
MsG0380015459.01.T01 AT3G55880 59.596 198 60 6 14 194 1 195 7.11e-61 191
MsG0380015459.01.T01 AT3G55880 59.596 198 60 6 14 194 1 195 8.21e-61 192
MsG0380015459.01.T01 AT3G55880 59.596 198 60 6 14 194 1 195 8.21e-61 192
MsG0380015459.01.T01 AT1G80280 41.361 191 88 5 21 194 9 192 1.86e-28 114
MsG0380015459.01.T01 AT1G52750 38.043 184 97 6 21 194 11 187 3.16e-23 99.4
MsG0380015459.01.T01 AT1G15490 40.314 191 90 6 21 194 9 192 1.07e-20 92.0
MsG0380015459.01.T01 AT1G15490 40.314 191 90 6 21 194 9 192 1.35e-20 91.7

Find 71 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATTGCGTTGGCAATAT+TGG 0.214527 3:+70500890 None:intergenic
AAATTGTTGATTGGTGTTAT+AGG 0.235723 3:-70500305 MsG0380015459.01.T01:three_prime_UTR
GCCAATATTGCCAACGCAAT+TGG 0.271017 3:-70500891 MsG0380015459.01.T01:CDS
TTTAAAGCTGTTTATGTGTT+TGG 0.273584 3:-70502471 MsG0380015459.01.T01:CDS
GTGGGTATTCTCCAACTTGC+AGG 0.299773 3:+70500865 None:intergenic
TTGATTGGTGTTATAGGTAT+AGG 0.310602 3:-70500299 MsG0380015459.01.T01:three_prime_UTR
GGTATATATAGCTTTAGTTT+TGG 0.330201 3:-70500278 MsG0380015459.01.T01:three_prime_UTR
ATTATTCAAAGGAGCTGAAA+TGG 0.332065 3:-70502963 MsG0380015459.01.T01:CDS
AAATGATCAGTCACTCACTA+TGG 0.333726 3:-70500626 MsG0380015459.01.T01:exon
TCTCTCTTCCTGAAGAATCT+TGG 0.338218 3:+70500652 None:intergenic
CAGATTTCAGCTTGCACAAA+TGG 0.343327 3:-70500689 MsG0380015459.01.T01:CDS
ATTGTTAAGGAAAGAGAAAC+AGG 0.343782 3:+70502779 None:intergenic
TAAATCATCATCATGAGAAT+TGG 0.352798 3:-70502995 None:intergenic
TAGAGAGAGAAGAAAGCTTT+TGG 0.358985 3:-70502349 MsG0380015459.01.T01:CDS
CTCTCTACAACTTGTTCTAT+AGG 0.360607 3:+70502365 None:intergenic
CTCTCTTCCTGAAGAATCTT+GGG 0.375477 3:+70500653 None:intergenic
CCAATATTGCCAACGCAATT+GGG 0.379583 3:-70500890 MsG0380015459.01.T01:CDS
CACTAGCAACAATTAATAAT+AGG 0.384998 3:-70500845 MsG0380015459.01.T01:CDS
GCTGTTTATGTGTTTGGAAA+TGG 0.390941 3:-70502465 MsG0380015459.01.T01:CDS
ATATGAGGTGGTTGTTAAGT+TGG 0.392211 3:-70501339 MsG0380015459.01.T01:CDS
ATGAGAAGAGAGTATTGTTA+AGG 0.395422 3:+70502766 None:intergenic
TATAAAAGTGAATGGATTGT+TGG 0.410589 3:-70500175 MsG0380015459.01.T01:three_prime_UTR
GGACTAACATATTAGATTAG+AGG 0.420459 3:-70500604 MsG0380015459.01.T01:three_prime_UTR
GAGGTATCCCAAGATTCTTC+AGG 0.427863 3:-70500660 MsG0380015459.01.T01:CDS
TATGAGGTGGTTGTTAAGTT+GGG 0.434590 3:-70501338 MsG0380015459.01.T01:CDS
ATTGTATATATAAAAGTGAA+TGG 0.437703 3:-70500183 MsG0380015459.01.T01:three_prime_UTR
TCAGCAATAACCAATAGAAC+CGG 0.440120 3:+70502839 None:intergenic
GTGTTCTTGTGCGTTGGCTG+TGG 0.460083 3:-70502403 MsG0380015459.01.T01:CDS
TCAGGTTTCCTAAGGAATGC+TGG 0.476645 3:-70500392 MsG0380015459.01.T01:intron
ATCGTTGTTATACACAAATA+AGG 0.477435 3:+70502525 None:intergenic
CTACTTACAGAAAATGATGA+AGG 0.486815 3:+70502682 None:intergenic
GGAAGCAAATTATTATTCAA+AGG 0.489130 3:-70502974 MsG0380015459.01.T01:CDS
GTTTGTGTGTTCTTGTGCGT+TGG 0.489131 3:-70502409 MsG0380015459.01.T01:CDS
AGTGTTGAGAGAAGAGCTGA+AGG 0.489499 3:+70502806 None:intergenic
ATCTTGTTTCAGGTTTCCTA+AGG 0.490295 3:-70500400 MsG0380015459.01.T01:intron
GGAAATGGAAGTGGCTATGT+TGG 0.494818 3:-70502450 MsG0380015459.01.T01:CDS
GAAGAATACCAGCATTCCTT+AGG 0.497145 3:+70500384 None:intergenic
AACTAGACTATAATCAGTGT+TGG 0.501910 3:+70500356 None:intergenic
AGATTTCAGCTTGCACAAAT+GGG 0.503541 3:-70500688 MsG0380015459.01.T01:CDS
TTATTCAAAGGAGCTGAAAT+GGG 0.504508 3:-70502962 MsG0380015459.01.T01:CDS
TGTTCTTGTGCGTTGGCTGT+GGG 0.508786 3:-70502402 MsG0380015459.01.T01:CDS
TGAGACATAAAATTGTTGAT+TGG 0.509232 3:-70500314 MsG0380015459.01.T01:three_prime_UTR
AGGTGGTTGTTAAGTTGGGT+AGG 0.510559 3:-70501334 MsG0380015459.01.T01:CDS
CCTCTTGATCGTGAAAGTCT+TGG 0.511477 3:+70502549 None:intergenic
ATAAGATATACACGAATCAA+AGG 0.535440 3:+70500211 None:intergenic
TATGTGTTTGGAAATGGAAG+TGG 0.538754 3:-70502459 MsG0380015459.01.T01:CDS
ACTAGACTATAATCAGTGTT+GGG 0.539005 3:+70500357 None:intergenic
TTAAGTCCTCATGTTCATCA+AGG 0.539933 3:-70500519 MsG0380015459.01.T01:three_prime_UTR
CTATTATTAATTGTTGCTAG+TGG 0.544843 3:+70500846 None:intergenic
TAAGATATACACGAATCAAA+GGG 0.547563 3:+70500212 None:intergenic
TATTATTAATTGTTGCTAGT+GGG 0.549983 3:+70500847 None:intergenic
TTGCAGGGTCCCAATTGCGT+TGG 0.552074 3:+70500881 None:intergenic
AATGATCAGTCACTCACTAT+GGG 0.560782 3:-70500625 MsG0380015459.01.T01:exon
CAGCAATAACCAATAGAACC+GGG 0.564536 3:+70502840 None:intergenic
TGGGTATTCTCCAACTTGCA+GGG 0.570810 3:+70500866 None:intergenic
GGTGGTTGTTAAGTTGGGTA+GGG 0.576038 3:-70501333 MsG0380015459.01.T01:intron
GGTGTTTATAGTTTATGTGA+TGG 0.578444 3:-70502573 MsG0380015459.01.T01:intron
GCAATTGGGACCCTGCAAGT+TGG 0.582465 3:-70500876 MsG0380015459.01.T01:CDS
ATCTAAAAGAATATTAAGAG+TGG 0.588910 3:-70502918 MsG0380015459.01.T01:CDS
TGAATACAGCATATATGAGG+TGG 0.588980 3:-70501351 MsG0380015459.01.T01:CDS
TGAAGAATCTTGGGATACCT+CGG 0.600326 3:+70500662 None:intergenic
GGATCTTATTATTGAAACGA+GGG 0.601692 3:+70502703 None:intergenic
CCAAGACTTTCACGATCAAG+AGG 0.609953 3:-70502549 MsG0380015459.01.T01:CDS
GGCTGTGGGACATGTTGTCG+TGG 0.612882 3:-70502388 MsG0380015459.01.T01:CDS
GGCATTCCTTGATGAACATG+AGG 0.624080 3:+70500513 None:intergenic
AATGGAAGTGGCTATGTTGG+AGG 0.637532 3:-70502447 MsG0380015459.01.T01:CDS
CTTGCACAAATGGGTATCCG+AGG 0.640579 3:-70500679 MsG0380015459.01.T01:CDS
ATGTTCATCAAGGAATGCCA+CGG 0.654170 3:-70500509 MsG0380015459.01.T01:intron
GATCTTATTATTGAAACGAG+GGG 0.673020 3:+70502704 None:intergenic
AGGATCTTATTATTGAAACG+AGG 0.676792 3:+70502702 None:intergenic
AGCAATAACCAATAGAACCG+GGG 0.697692 3:+70502841 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATAGTATCAATTAAA+AGG + Chr3:70501106-70501125 None:intergenic 10.0%
!!! AAAATATCAAAAGTATAAAA+TGG + Chr3:70502447-70502466 None:intergenic 10.0%
!!! ATCTTTTTATAATTATTAAG+TGG + Chr3:70502344-70502363 None:intergenic 10.0%
!!! TCTTTTTATAATTATTAAGT+GGG + Chr3:70502343-70502362 None:intergenic 10.0%
!! ATAATAATTTACAAACATCT+AGG - Chr3:70502154-70502173 MsG0380015459.01.T01:intron 15.0%
!! ATTGTATATATAAAAGTGAA+TGG - Chr3:70502974-70502993 MsG0380015459.01.T01:CDS 15.0%
!! CTTTATCAAAATTACAAATT+TGG + Chr3:70501976-70501995 None:intergenic 15.0%
!! TACAAATTTGGATTAAAAAT+TGG + Chr3:70501964-70501983 None:intergenic 15.0%
!! TATTGATATTAGAACAAAAT+AGG - Chr3:70501650-70501669 MsG0380015459.01.T01:intron 15.0%
!! TTAGTCAAAAATAAACATTA+TGG - Chr3:70501161-70501180 MsG0380015459.01.T01:intron 15.0%
!! TTTAGGTAAACATATAAATA+TGG + Chr3:70502398-70502417 None:intergenic 15.0%
!!! TTTTATTTCATTTTTGATGT+AGG - Chr3:70500563-70500582 MsG0380015459.01.T01:three_prime_UTR 15.0%
!! AAATTTGGATTAAAAATTGG+AGG + Chr3:70501961-70501980 None:intergenic 20.0%
!! AATTTGGATTAAAAATTGGA+GGG + Chr3:70501960-70501979 None:intergenic 20.0%
!! ATCTAAAAGAATATTAAGAG+TGG - Chr3:70500239-70500258 MsG0380015459.01.T01:three_prime_UTR 20.0%
!! CAAAGCTGAAAAAATTAAAT+AGG + Chr3:70501762-70501781 None:intergenic 20.0%
!! CCTTTAATTAAAATCCAAAA+GGG + Chr3:70500538-70500557 None:intergenic 20.0%
!! TATTATGTATAGTCAAAATG+TGG + Chr3:70502137-70502156 None:intergenic 20.0%
!! TATTATTAATTGTTGCTAGT+GGG + Chr3:70502313-70502332 None:intergenic 20.0%
!! TGTTCTAATATCAATAAGAA+AGG + Chr3:70501646-70501665 None:intergenic 20.0%
!! TTTGAAAAATTTATGTGAGA+AGG + Chr3:70500893-70500912 None:intergenic 20.0%
!!! AAAAAGTAGCAATTAGATTT+TGG + Chr3:70502734-70502753 None:intergenic 20.0%
!!! AATTTCATCTTTTAGAATGT+AGG - Chr3:70501467-70501486 MsG0380015459.01.T01:intron 20.0%
!!! ATTTTGATAAAATCAAGACT+TGG - Chr3:70502021-70502040 MsG0380015459.01.T01:intron 20.0%
!!! CATTGATATTTTCAACATTT+TGG - Chr3:70501132-70501151 MsG0380015459.01.T01:intron 20.0%
!!! CCTTTTGGATTTTAATTAAA+GGG - Chr3:70500536-70500555 MsG0380015459.01.T01:three_prime_UTR 20.0%
!!! CTATTTAATTTTTTCAGCTT+TGG - Chr3:70501760-70501779 MsG0380015459.01.T01:intron 20.0%
!!! TAGTCACATTCAATATTTTT+AGG + Chr3:70502415-70502434 None:intergenic 20.0%
! ACTAGTATATGAATATGATG+TGG + Chr3:70501890-70501909 None:intergenic 25.0%
! ATAAGATATACACGAATCAA+AGG + Chr3:70502949-70502968 None:intergenic 25.0%
! ATCGTTGTTATACACAAATA+AGG + Chr3:70500635-70500654 None:intergenic 25.0%
! ATTTGGAAGAGTAATTCAAT+GGG + Chr3:70501929-70501948 None:intergenic 25.0%
! CACTAGCAACAATTAATAAT+AGG - Chr3:70502312-70502331 MsG0380015459.01.T01:intron 25.0%
! CCCTTTAATTAAAATCCAAA+AGG + Chr3:70500539-70500558 None:intergenic 25.0%
! CTATTATTAATTGTTGCTAG+TGG + Chr3:70502314-70502333 None:intergenic 25.0%
! GGAAGCAAATTATTATTCAA+AGG - Chr3:70500183-70500202 MsG0380015459.01.T01:three_prime_UTR 25.0%
! GGGTATAAATGTATAATACA+TGG - Chr3:70501844-70501863 MsG0380015459.01.T01:intron 25.0%
! TAAGATATACACGAATCAAA+GGG + Chr3:70502948-70502967 None:intergenic 25.0%
! TATTTGGAAGAGTAATTCAA+TGG + Chr3:70501930-70501949 None:intergenic 25.0%
! TGAGACATAAAATTGTTGAT+TGG - Chr3:70502843-70502862 MsG0380015459.01.T01:CDS 25.0%
!! ATCAACAATTTTATGTCTCA+TGG + Chr3:70502843-70502862 None:intergenic 25.0%
!! GAAGTTTCCTTGATTTTAAA+TGG + Chr3:70501615-70501634 None:intergenic 25.0%
!! GTAAGTACCATTTAAAATCA+AGG - Chr3:70501605-70501624 MsG0380015459.01.T01:intron 25.0%
!! GTCTTGATTTTATCAAAATC+AGG + Chr3:70502020-70502039 None:intergenic 25.0%
!! TTAATTTTCAATGACCCTTT+TGG - Chr3:70500521-70500540 MsG0380015459.01.T01:three_prime_UTR 25.0%
!! TTTAAAGCTGTTTATGTGTT+TGG - Chr3:70500686-70500705 MsG0380015459.01.T01:CDS 25.0%
!! TTTTAAATGGTACTTACGAT+AGG + Chr3:70501602-70501621 None:intergenic 25.0%
!! TTTTGAATACAGCATATATG+AGG - Chr3:70501803-70501822 MsG0380015459.01.T01:intron 25.0%
!!! AAATTGTTGATTGGTGTTAT+AGG - Chr3:70502852-70502871 MsG0380015459.01.T01:CDS 25.0%
!!! ACTTTTTGTAATCTTGTTTC+AGG - Chr3:70502747-70502766 MsG0380015459.01.T01:CDS 25.0%
!!! CCCTTTTGGATTTTAATTAA+AGG - Chr3:70500535-70500554 MsG0380015459.01.T01:three_prime_UTR 25.0%
!!! GGTATATATAGCTTTAGTTT+TGG - Chr3:70502879-70502898 MsG0380015459.01.T01:CDS 25.0%
!!! TATAAAAGTGAATGGATTGT+TGG - Chr3:70502982-70503001 MsG0380015459.01.T01:CDS 25.0%
!!! TATTTTTTGCCTTAAGAGAA+TGG - Chr3:70502244-70502263 MsG0380015459.01.T01:intron 25.0%
AACTAGACTATAATCAGTGT+TGG + Chr3:70502804-70502823 None:intergenic 30.0%
AATATGGCATGAAAAGAACA+TGG + Chr3:70502382-70502401 None:intergenic 30.0%
ACTAGACTATAATCAGTGTT+GGG + Chr3:70502803-70502822 None:intergenic 30.0%
AGGATCTTATTATTGAAACG+AGG + Chr3:70500458-70500477 None:intergenic 30.0%
ATATGGCATGAAAAGAACAT+GGG + Chr3:70502381-70502400 None:intergenic 30.0%
ATGTATAATACATGGCCATA+AGG - Chr3:70501852-70501871 MsG0380015459.01.T01:intron 30.0%
ATTATTCAAAGGAGCTGAAA+TGG - Chr3:70500194-70500213 MsG0380015459.01.T01:three_prime_UTR 30.0%
ATTGTTAAGGAAAGAGAAAC+AGG + Chr3:70500381-70500400 None:intergenic 30.0%
CTACTTACAGAAAATGATGA+AGG + Chr3:70500478-70500497 None:intergenic 30.0%
GATCTTATTATTGAAACGAG+GGG + Chr3:70500456-70500475 None:intergenic 30.0%
GGACTAACATATTAGATTAG+AGG - Chr3:70502553-70502572 MsG0380015459.01.T01:CDS 30.0%
GGATCTTATTATTGAAACGA+GGG + Chr3:70500457-70500476 None:intergenic 30.0%
GGTGTTTATAGTTTATGTGA+TGG - Chr3:70500584-70500603 MsG0380015459.01.T01:three_prime_UTR 30.0%
TGTATAATACATGGCCATAA+GGG - Chr3:70501853-70501872 MsG0380015459.01.T01:intron 30.0%
TTATTCAAAGGAGCTGAAAT+GGG - Chr3:70500195-70500214 MsG0380015459.01.T01:three_prime_UTR 30.0%
TTCAAAGAATATGTGCAAGT+GGG - Chr3:70502091-70502110 MsG0380015459.01.T01:intron 30.0%
! AACTAATGGGAATTTTTGTG+AGG - Chr3:70501563-70501582 MsG0380015459.01.T01:intron 30.0%
! AATTTTATGTCTCATGGTAG+CGG + Chr3:70502837-70502856 None:intergenic 30.0%
!! ATGAGAAGAGAGTATTGTTA+AGG + Chr3:70500394-70500413 None:intergenic 30.0%
!! TTGATTGGTGTTATAGGTAT+AGG - Chr3:70502858-70502877 MsG0380015459.01.T01:CDS 30.0%
AAATGATCAGTCACTCACTA+TGG - Chr3:70502531-70502550 MsG0380015459.01.T01:CDS 35.0%
AAATGGTACTTACGATAGGT+GGG + Chr3:70501598-70501617 None:intergenic 35.0%
AATGATCAGTCACTCACTAT+GGG - Chr3:70502532-70502551 MsG0380015459.01.T01:CDS 35.0%
AATTTATGTGAGAAGGCAAG+TGG + Chr3:70500886-70500905 None:intergenic 35.0%
AATTTCCTTTGTCTTCTGGA+AGG - Chr3:70501678-70501697 MsG0380015459.01.T01:intron 35.0%
AGATTTCAGCTTGCACAAAT+GGG - Chr3:70502469-70502488 MsG0380015459.01.T01:CDS 35.0%
ATATGAGGTGGTTGTTAAGT+TGG - Chr3:70501818-70501837 MsG0380015459.01.T01:intron 35.0%
CAAAATGTGGTCACCAATTT+AGG + Chr3:70502124-70502143 None:intergenic 35.0%
CAATATTGGCCATTCTCTTA+AGG + Chr3:70502256-70502275 None:intergenic 35.0%
CGTAAATTTGTGTGCAAATG+TGG - Chr3:70501060-70501079 MsG0380015459.01.T01:intron 35.0%
CTCTCAAAAGATAATTACCG+TGG + Chr3:70502668-70502687 None:intergenic 35.0%
CTTTCACGATAGGAACTAAT+GGG - Chr3:70501550-70501569 MsG0380015459.01.T01:intron 35.0%
GCTGTTTATGTGTTTGGAAA+TGG - Chr3:70500692-70500711 MsG0380015459.01.T01:intron 35.0%
GTATAATACATGGCCATAAG+GGG - Chr3:70501854-70501873 MsG0380015459.01.T01:intron 35.0%
GTTCAAAGAATATGTGCAAG+TGG - Chr3:70502090-70502109 MsG0380015459.01.T01:intron 35.0%
GTTGAATTTCCTTTGTCTTC+TGG - Chr3:70501674-70501693 MsG0380015459.01.T01:intron 35.0%
TAAATGGTACTTACGATAGG+TGG + Chr3:70501599-70501618 None:intergenic 35.0%
TAAGCAAACTGGAAACTACT+TGG + Chr3:70501511-70501530 None:intergenic 35.0%
TATGAGGTGGTTGTTAAGTT+GGG - Chr3:70501819-70501838 MsG0380015459.01.T01:intron 35.0%
TATGTGTTTGGAAATGGAAG+TGG - Chr3:70500698-70500717 MsG0380015459.01.T01:intron 35.0%
TCAGCAATAACCAATAGAAC+CGG + Chr3:70500321-70500340 None:intergenic 35.0%
TGAATACAGCATATATGAGG+TGG - Chr3:70501806-70501825 MsG0380015459.01.T01:intron 35.0%
TTAAGTCCTCATGTTCATCA+AGG - Chr3:70502638-70502657 MsG0380015459.01.T01:intron 35.0%
! ACTTTGATGACAATTCCACT+TGG - Chr3:70501711-70501730 MsG0380015459.01.T01:intron 35.0%
! CTCTCTACAACTTGTTCTAT+AGG + Chr3:70500795-70500814 None:intergenic 35.0%
! GGAATTTTTGTGAGGTAACA+AGG - Chr3:70501571-70501590 MsG0380015459.01.T01:intron 35.0%
! TAGAGAGAGAAGAAAGCTTT+TGG - Chr3:70500808-70500827 MsG0380015459.01.T01:CDS 35.0%
! TTCCAGTTTGCTTAATGACT+TGG - Chr3:70501517-70501536 MsG0380015459.01.T01:intron 35.0%
! TTGCTTAATGACTTGGAGTA+TGG - Chr3:70501524-70501543 MsG0380015459.01.T01:intron 35.0%
!! ATCTTGTTTCAGGTTTCCTA+AGG - Chr3:70502757-70502776 MsG0380015459.01.T01:CDS 35.0%
!! TGGTTGGTAAATGGATTGAA+GGG + Chr3:70500866-70500885 None:intergenic 35.0%
AGCAATAACCAATAGAACCG+GGG + Chr3:70500319-70500338 None:intergenic 40.0%
ATGTTCATCAAGGAATGCCA+CGG - Chr3:70502648-70502667 MsG0380015459.01.T01:intron 40.0%
ATTGGAGGGTTGAGACTATT+TGG + Chr3:70501946-70501965 None:intergenic 40.0%
CAATACCTTCCAGAAGACAA+AGG + Chr3:70501686-70501705 None:intergenic 40.0%
CAGATTTCAGCTTGCACAAA+TGG - Chr3:70502468-70502487 MsG0380015459.01.T01:CDS 40.0%
CAGCAATAACCAATAGAACC+GGG + Chr3:70500320-70500339 None:intergenic 40.0%
CCAATATTGCCAACGCAATT+GGG - Chr3:70502267-70502286 MsG0380015459.01.T01:intron 40.0%
CTCCAAGTCATTAAGCAAAC+TGG + Chr3:70501522-70501541 None:intergenic 40.0%
CTCTCTTCCTGAAGAATCTT+GGG + Chr3:70502507-70502526 None:intergenic 40.0%
GAAGAATACCAGCATTCCTT+AGG + Chr3:70502776-70502795 None:intergenic 40.0%
GCTTTCACGATAGGAACTAA+TGG - Chr3:70501549-70501568 MsG0380015459.01.T01:intron 40.0%
TAACACCATATCTTCGCATG+TGG + Chr3:70502195-70502214 None:intergenic 40.0%
TCTCTCTTCCTGAAGAATCT+TGG + Chr3:70502508-70502527 None:intergenic 40.0%
TGAAGAATCTTGGGATACCT+CGG + Chr3:70502498-70502517 None:intergenic 40.0%
TGGAATCCAATATCCCCTTA+TGG + Chr3:70501870-70501889 None:intergenic 40.0%
TTATGCCACATGCGAAGATA+TGG - Chr3:70502187-70502206 MsG0380015459.01.T01:intron 40.0%
TTTGCTTTCAAGCATCCAAG+TGG + Chr3:70501729-70501748 None:intergenic 40.0%
! ACTTCTTCTATTTTCTGCCC+CGG - Chr3:70500299-70500318 MsG0380015459.01.T01:three_prime_UTR 40.0%
! CTTAATGACTTGGAGTATGG+TGG - Chr3:70501527-70501546 MsG0380015459.01.T01:intron 40.0%
! CTTTGTCTTCTGGAAGGTAT+TGG - Chr3:70501684-70501703 MsG0380015459.01.T01:intron 40.0%
!! GTGGTTGGTAAATGGATTGA+AGG + Chr3:70500867-70500886 None:intergenic 40.0%
AATGGAAGTGGCTATGTTGG+AGG - Chr3:70500710-70500729 MsG0380015459.01.T01:intron 45.0%
ACATGGCCATAAGGGGATAT+TGG - Chr3:70501861-70501880 MsG0380015459.01.T01:intron 45.0%
AGTATGGTGGCTTTCACGAT+AGG - Chr3:70501540-70501559 MsG0380015459.01.T01:intron 45.0%
AGTGGGAACACGTCCTAAAT+TGG - Chr3:70502108-70502127 MsG0380015459.01.T01:intron 45.0%
CCAAGACTTTCACGATCAAG+AGG - Chr3:70500608-70500627 MsG0380015459.01.T01:three_prime_UTR 45.0%
CCTCTTGATCGTGAAAGTCT+TGG + Chr3:70500611-70500630 None:intergenic 45.0%
GCCAATATTGCCAACGCAAT+TGG - Chr3:70502266-70502285 MsG0380015459.01.T01:intron 45.0%
GGAAATGGAAGTGGCTATGT+TGG - Chr3:70500707-70500726 MsG0380015459.01.T01:intron 45.0%
GGCATTCCTTGATGAACATG+AGG + Chr3:70502647-70502666 None:intergenic 45.0%
GTTTGTGTGTTCTTGTGCGT+TGG - Chr3:70500748-70500767 MsG0380015459.01.T01:intron 45.0%
TATGTGAGAAGGCAAGTGGT+TGG + Chr3:70500882-70500901 None:intergenic 45.0%
TCAGGTTTCCTAAGGAATGC+TGG - Chr3:70502765-70502784 MsG0380015459.01.T01:CDS 45.0%
TGGGTATTCTCCAACTTGCA+GGG + Chr3:70502294-70502313 None:intergenic 45.0%
! AGTGTTGAGAGAAGAGCTGA+AGG + Chr3:70500354-70500373 None:intergenic 45.0%
! ATTTTCTGCCCCGGTTCTAT+TGG - Chr3:70500308-70500327 MsG0380015459.01.T01:three_prime_UTR 45.0%
! CCCAATTGCGTTGGCAATAT+TGG + Chr3:70502270-70502289 None:intergenic 45.0%
! GAGGTATCCCAAGATTCTTC+AGG - Chr3:70502497-70502516 MsG0380015459.01.T01:CDS 45.0%
!! AGGTGGTTGTTAAGTTGGGT+AGG - Chr3:70501823-70501842 MsG0380015459.01.T01:intron 45.0%
!! GAAGGCAAGTGGTTGGTAAA+TGG + Chr3:70500875-70500894 None:intergenic 45.0%
!! GGTGGTTGTTAAGTTGGGTA+GGG - Chr3:70501824-70501843 MsG0380015459.01.T01:intron 45.0%
CTTGCACAAATGGGTATCCG+AGG - Chr3:70502478-70502497 MsG0380015459.01.T01:CDS 50.0%
GTGGGTATTCTCCAACTTGC+AGG + Chr3:70502295-70502314 None:intergenic 50.0%
!! TGTTCTTGTGCGTTGGCTGT+GGG - Chr3:70500755-70500774 MsG0380015459.01.T01:intron 50.0%
GCAATTGGGACCCTGCAAGT+TGG - Chr3:70502281-70502300 MsG0380015459.01.T01:intron 55.0%
TTGCAGGGTCCCAATTGCGT+TGG + Chr3:70502279-70502298 None:intergenic 55.0%
!! GTGTTCTTGTGCGTTGGCTG+TGG - Chr3:70500754-70500773 MsG0380015459.01.T01:intron 55.0%
GGCTGTGGGACATGTTGTCG+TGG - Chr3:70500769-70500788 MsG0380015459.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70500174 70503005 70500174 ID=MsG0380015459.01;Name=MsG0380015459.01
Chr3 mRNA 70500174 70503005 70500174 ID=MsG0380015459.01.T01;Parent=MsG0380015459.01;Name=MsG0380015459.01.T01;_AED=0.34;_eAED=0.42;_QI=0|0.2|0.33|1|0|0|6|370|278
Chr3 exon 70500174 70500410 70500174 ID=MsG0380015459.01.T01:exon:23656;Parent=MsG0380015459.01.T01
Chr3 exon 70500510 70500708 70500510 ID=MsG0380015459.01.T01:exon:23655;Parent=MsG0380015459.01.T01
Chr3 exon 70500797 70500919 70500797 ID=MsG0380015459.01.T01:exon:23654;Parent=MsG0380015459.01.T01
Chr3 exon 70501334 70501402 70501334 ID=MsG0380015459.01.T01:exon:23653;Parent=MsG0380015459.01.T01
Chr3 exon 70502326 70502584 70502326 ID=MsG0380015459.01.T01:exon:23652;Parent=MsG0380015459.01.T01
Chr3 exon 70502686 70503005 70502686 ID=MsG0380015459.01.T01:exon:23651;Parent=MsG0380015459.01.T01
Chr3 CDS 70502686 70503005 70502686 ID=MsG0380015459.01.T01:cds;Parent=MsG0380015459.01.T01
Chr3 CDS 70502326 70502584 70502326 ID=MsG0380015459.01.T01:cds;Parent=MsG0380015459.01.T01
Chr3 CDS 70501334 70501402 70501334 ID=MsG0380015459.01.T01:cds;Parent=MsG0380015459.01.T01
Chr3 CDS 70500797 70500919 70500797 ID=MsG0380015459.01.T01:cds;Parent=MsG0380015459.01.T01
Chr3 CDS 70500643 70500708 70500643 ID=MsG0380015459.01.T01:cds;Parent=MsG0380015459.01.T01
Chr3 three_prime_UTR 70500510 70500642 70500510 ID=MsG0380015459.01.T01:three_prime_utr;Parent=MsG0380015459.01.T01
Chr3 three_prime_UTR 70500174 70500410 70500174 ID=MsG0380015459.01.T01:three_prime_utr;Parent=MsG0380015459.01.T01
Gene Sequence

>MsG0380015459.01.T01

ATGAGAATTGGAAGCAAATTATTATTCAAAGGAGCTGAAATGGGTTTTTCATCTAAAGAAGAGAAATCTAAAAGAATATTAAGAGTGGTGAAAACTTTGTTTTTCTTAATCACTATGATTCTTTCACTTCTTCTATTTTCTGCCCCGGTTCTATTGGTTATTGCTGATGCTCTTCTACCTTCAGCTCTTCTCTCAACACTTTCACCTGTTTCTCTTTCCTTAACAATACTCTCTTCTCATTTCAACAACTATGATTTTCGTTACTCTCTCATTGATATACCCCTCGTTTCAATAATAAGATCCTTCATCATTTTCTGTAATTTATGTGATGGACCAAGACTTTCACGATCAAGAGGACCTTATTTGTGTATAACAACGATGTGTTCTGTTTTGTCTTTGTTATTTGTTTCGTTTAAAGCTGTTTATGTGTTTGGAAATGGAAGTGGCTATGTTGGAGGATCAGAAATTGCTTTGTTTGTGTGTTCTTGTGCGTTGGCTGTGGGACATGTTGTCGTGGCCTATAGAACAAGTTGTAGAGAGAGAAGAAAGCTTTTGGTTTACAAGATTGACATTGAATCTCTTTGGCAACATATTAATTTGTTGACTTTTGAATACAGCATATATGAGGTGGTTGTTAAGTTGGGTAGGAGAATGGCCAATATTGCCAACGCAATTGGGACCCTGCAAGTTGGAGAATACCCACTAGCAACAATTAATAATAGGCTTATCCCACTTAATAATTATAAAAAGATCTTAACAAATTATTCCCATATTTCAGCTTGCACAAATGGGTATCCGAGGTATCCCAAGATTCTTCAGGAAGAGAGAATCAAATGA
Protein sequence

>MsG0380015459.01.T01

MRIGSKLLFKGAEMGFSSKEEKSKRILRVVKTLFFLITMILSLLLFSAPVLLVIADALLPSALLSTLSPVSLSLTILSSHFNNYDFRYSLIDIPLVSIIRSFIIFCNLCDGPRLSRSRGPYLCITTMCSVLSLLFVSFKAVYVFGNGSGYVGGSEIALFVCSCALAVGHVVVAYRTSCRERRKLLVYKIDIESLWQHINLLTFEYSIYEVVVKLGRRMANIANAIGTLQVGEYPLATINNRLIPLNNYKKILTNYSHISACTNGYPRYPKILQEERIK*