AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047568.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047568.01.T01 MTR_4g130310 96.586 498 15 1 1 498 1 496 0.0 992
MsG0880047568.01.T01 MTR_4g130310 96.386 498 15 2 1 498 1 495 0.0 986
MsG0880047568.01.T01 MTR_4g007710 48.156 488 185 10 51 498 60 519 5.23e-131 390
MsG0880047568.01.T01 MTR_4g130340 63.860 285 85 4 48 320 12 290 6.07e-113 336
MsG0880047568.01.T01 MTR_1g084010 47.953 171 83 2 102 267 19 188 2.73e-44 159
MsG0880047568.01.T01 MTR_6g013040 38.926 149 80 3 110 256 50 189 1.31e-25 104
MsG0880047568.01.T01 MTR_6g013260 37.584 149 82 3 110 256 50 189 1.24e-22 96.7
MsG0880047568.01.T01 MTR_4g130350 57.353 68 25 1 431 498 14 77 2.02e-17 77.4
MsG0880047568.01.T01 MTR_4g113870 86.111 36 5 0 180 215 15 50 1.24e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047568.01.T01 AT2G24100 46.863 510 214 10 1 498 1 465 3.76e-131 389
MsG0880047568.01.T01 AT4G30780 50.990 404 139 12 1 360 1 389 4.30e-111 341
MsG0880047568.01.T01 AT4G30780 40.936 171 85 2 333 498 423 582 3.03e-20 94.4
MsG0880047568.01.T01 AT3G05770 41.364 220 114 6 48 257 17 231 1.10e-33 132
MsG0880047568.01.T01 AT3G05770 40.909 220 115 6 48 257 17 231 1.97e-33 131
MsG0880047568.01.T01 AT1G54300 43.671 158 79 4 109 257 2 158 1.28e-28 115

Find 133 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATCCTCGATCTCAAATT+TGG 0.170910 8:-88180323 None:intergenic
GATATGTCAAACAAGAATTT+TGG 0.184107 8:-88184786 None:intergenic
TCATGTGAATTGGGCACTGC+TGG 0.262746 8:-88184597 None:intergenic
ATCCCCTGAAGCCATTTCTT+TGG 0.263985 8:-88184421 None:intergenic
TGCCACAATGTGTGCTTTCT+AGG 0.293917 8:-88181313 None:intergenic
TAAACTATGTTTACTTGTTA+AGG 0.295871 8:+88185020 MsG0880047568.01.T01:three_prime_UTR
TCAGAAGATTAGTCCCGATT+TGG 0.304438 8:+88184807 MsG0880047568.01.T01:exon
GAGGACTCGAGAGATGTTTA+TGG 0.319905 8:+88184684 MsG0880047568.01.T01:CDS
TTGCCAAACAGAAGCTTGTT+TGG 0.321183 8:+88181053 MsG0880047568.01.T01:CDS
CTTAATGAGCCTAGCCCTTT+GGG 0.327280 8:+88180706 MsG0880047568.01.T01:CDS
TAATGCCATCCATCATTTCT+TGG 0.333114 8:-88184473 None:intergenic
GGATCCTCGATCTCAAATTT+GGG 0.347298 8:-88180322 None:intergenic
ACTATCAACGAGACTCAAAA+TGG 0.348746 8:-88184983 None:intergenic
GACACTTTGTCAAGAGAATT+CGG 0.351718 8:+88180774 MsG0880047568.01.T01:CDS
TCATAGGAGGCACTAGCATT+TGG 0.352538 8:+88184880 MsG0880047568.01.T01:three_prime_UTR
GCCCTTTGGGTTTAAGTCTC+AGG 0.361134 8:+88180719 MsG0880047568.01.T01:CDS
GCCCGTGTTGTCATGTGAAT+TGG 0.371557 8:-88184607 None:intergenic
ACTTAATGAGCCTAGCCCTT+TGG 0.380538 8:+88180705 MsG0880047568.01.T01:CDS
AGTTCTTATATTACCTGAAC+TGG 0.384241 8:-88183670 None:intergenic
TTCCCAAACAAGCTTCTGTT+TGG 0.391805 8:-88181056 None:intergenic
AAGCCAACAGCCAGAGATAA+TGG 0.395009 8:+88183431 MsG0880047568.01.T01:CDS
CAGAAGATTAGTCCCGATTT+GGG 0.396073 8:+88184808 MsG0880047568.01.T01:exon
CTCCAATCTTTCAGCAGAAA+AGG 0.396852 8:-88184448 None:intergenic
GCATCACATTTCCAAAGAAA+TGG 0.397833 8:+88184410 MsG0880047568.01.T01:CDS
AGAAAGAGGGCGAAGGAGAA+GGG 0.407538 8:-88180150 None:intergenic
ATTTCCAAAGAAATGGCTTC+AGG 0.408201 8:+88184417 MsG0880047568.01.T01:CDS
AGACGATTCCCATTGAGAAC+GGG 0.414818 8:-88180278 None:intergenic
TTCGCAGGGCACACTATCTA+AGG 0.416227 8:-88183637 None:intergenic
TGCCAAACAGAAGCTTGTTT+GGG 0.418118 8:+88181054 MsG0880047568.01.T01:CDS
TTCCTCGACATGCCTGGTGC+CGG 0.420662 8:-88184714 None:intergenic
ACATTCTGAAATTCCCAAAT+CGG 0.428571 8:-88184821 None:intergenic
AAATCGCTCATTGACATAGA+AGG 0.430459 8:-88184372 None:intergenic
TGATCCCTTTGAATCAGCTT+CGG 0.431254 8:-88184313 None:intergenic
AAGAAAGAGGGCGAAGGAGA+AGG 0.437217 8:-88180151 None:intergenic
CCTAAAGAAAAGAGGCTGTC+TGG 0.437486 8:-88181275 None:intergenic
AAAGATTGTGATTTGCATCA+AGG 0.438860 8:+88183510 MsG0880047568.01.T01:CDS
CATGTGAATTGGGCACTGCT+GGG 0.440357 8:-88184596 None:intergenic
GAAGCACCTTCCTCCAGTTC+AGG 0.441844 8:+88183657 MsG0880047568.01.T01:CDS
ACTGGAGGAAGGTGCTTCGC+AGG 0.443629 8:-88183652 None:intergenic
CTAAGAATCCCCGTTCTCAA+TGG 0.462290 8:+88180269 MsG0880047568.01.T01:CDS
CGGTCGTAAATGATGGAGAC+AGG 0.464032 8:-88183590 None:intergenic
GAAATATGAAGGTGACTTAG+TGG 0.465278 8:+88181018 MsG0880047568.01.T01:CDS
CTTGTTTGGGAAGTTCTTGA+GGG 0.466937 8:+88181067 MsG0880047568.01.T01:CDS
TGGGATCAAATAAAACTGCC+TGG 0.467087 8:+88184342 MsG0880047568.01.T01:CDS
GACAACACGGGCTCTATTGA+AGG 0.467111 8:+88184618 MsG0880047568.01.T01:CDS
AGAGAATTAAATTACCACTA+AGG 0.468718 8:-88181176 None:intergenic
AGGTCCATCATCAGGACAAT+TGG 0.475804 8:-88181143 None:intergenic
AAAAGTCAACATAGATATCA+AGG 0.479802 8:+88184653 MsG0880047568.01.T01:CDS
CTGTGCTCGGTCGTAAATGA+TGG 0.481540 8:-88183597 None:intergenic
TCTACGCTGTCTCTTACAAA+TGG 0.481679 8:+88184569 MsG0880047568.01.T01:CDS
AGGAGCATGTTGATCTTGAA+TGG 0.481866 8:-88180344 None:intergenic
CCCGTGTTGTCATGTGAATT+GGG 0.482809 8:-88184606 None:intergenic
TAAGAATCCCCGTTCTCAAT+GGG 0.488381 8:+88180270 MsG0880047568.01.T01:CDS
ATGTGAATTGGGCACTGCTG+GGG 0.492111 8:-88184595 None:intergenic
ATGCAAAACCCTAACGGAAA+AGG 0.495498 8:-88180184 None:intergenic
ACCTAGCACATTGACCTTAG+TGG 0.495667 8:+88181162 MsG0880047568.01.T01:CDS
AGACTTAAACCCAAAGGGCT+AGG 0.496309 8:-88180715 None:intergenic
ACATCTGCTTAACGACAATC+AGG 0.501367 8:+88184500 MsG0880047568.01.T01:CDS
AGATGTTTATGGTGGCAATC+CGG 0.504171 8:+88184695 MsG0880047568.01.T01:CDS
TTTCCAAAGAAATGGCTTCA+GGG 0.505175 8:+88184418 MsG0880047568.01.T01:CDS
AGTGAATCAACCATTATCTC+TGG 0.506506 8:-88183441 None:intergenic
TTTATTGGTAATGTTAAGGA+TGG 0.508236 8:+88185067 MsG0880047568.01.T01:three_prime_UTR
AAAGCCAATTGTCCTGATGA+TGG 0.508417 8:+88181139 MsG0880047568.01.T01:CDS
CTATGTTTACTTGTTAAGGA+TGG 0.510914 8:+88185024 MsG0880047568.01.T01:three_prime_UTR
AGTAAACATAGTTTACTTGA+AGG 0.511690 8:-88185012 None:intergenic
GAGTCTTTCCTCGACATGCC+TGG 0.511707 8:-88184720 None:intergenic
CATTCTGAAATTCCCAAATC+GGG 0.512987 8:-88184820 None:intergenic
GCTTGTTTGGGAAGTTCTTG+AGG 0.513290 8:+88181066 MsG0880047568.01.T01:CDS
GACATAGAAGGACGGAGCCC+AGG 0.513305 8:-88184360 None:intergenic
TGTGAATTGGGCACTGCTGG+GGG 0.513353 8:-88184594 None:intergenic
ATGTCGAGGAAAGACTCATT+TGG 0.515569 8:+88184726 MsG0880047568.01.T01:CDS
ATTGGAGTACCAAGAAATGA+TGG 0.518306 8:+88184464 MsG0880047568.01.T01:CDS
AAAGTAAAATAGAAATTCAA+TGG 0.521653 8:+88181098 MsG0880047568.01.T01:CDS
TCCTGAGACTTAAACCCAAA+GGG 0.525740 8:-88180720 None:intergenic
TTGCATCAAGGCAAGGGCAA+TGG 0.532360 8:+88183522 MsG0880047568.01.T01:CDS
AATGTGTGCTTTCTAGGTTG+AGG 0.532693 8:-88181307 None:intergenic
CAGTATAAATCGAAATATGA+AGG 0.533390 8:+88181007 MsG0880047568.01.T01:intron
AAGAATATACCTATGTGTGC+TGG 0.533619 8:-88181365 None:intergenic
TTTGGAAGAGATGCAATTCG+AGG 0.535660 8:-88184768 None:intergenic
ACTTAAGTCGGTCGTTACAC+TGG 0.536403 8:-88183404 None:intergenic
TTGTGATTTGCATCAAGGCA+AGG 0.538238 8:+88183515 MsG0880047568.01.T01:CDS
GGAGCATGTTGATCTTGAAT+GGG 0.540041 8:-88180343 None:intergenic
ATTCAAAGGGATCAAGACAC+TGG 0.540745 8:+88184322 MsG0880047568.01.T01:CDS
TGCTTCAGTTGAAAAGCTGA+AGG 0.545025 8:+88180852 MsG0880047568.01.T01:CDS
AGGACGTAAAGAGAAGAAAG+AGG 0.546293 8:-88180164 None:intergenic
GATGGAGACAGGGATGAATG+AGG 0.546725 8:-88183579 None:intergenic
TAATTCCGAAGCTGATTCAA+AGG 0.548618 8:+88184308 MsG0880047568.01.T01:CDS
TATGGTGGCAATCCGGCACC+AGG 0.548784 8:+88184702 MsG0880047568.01.T01:CDS
CAACCATTATCTCTGGCTGT+TGG 0.549994 8:-88183434 None:intergenic
TTCCAAAGAAATGGCTTCAG+GGG 0.550738 8:+88184419 MsG0880047568.01.T01:CDS
TGTGATTTGCATCAAGGCAA+GGG 0.551177 8:+88183516 MsG0880047568.01.T01:CDS
ATGTGTGCTGGCCTGTCCAC+CGG 0.553837 8:-88181353 None:intergenic
AATGTGCTAGGTCCATCATC+AGG 0.555133 8:-88181151 None:intergenic
TGTATCAAATCTAACAGCGA+AGG 0.555578 8:-88180748 None:intergenic
TTAGTCTCCCTAAAGAAAAG+AGG 0.560643 8:-88181283 None:intergenic
AGCAGAAGGATCACTGTGCT+CGG 0.561280 8:-88183610 None:intergenic
CCATCAAAATTTAGAGTCAA+CGG 0.566227 8:-88180231 None:intergenic
GGGATCAAATAAAACTGCCT+GGG 0.569804 8:+88184343 MsG0880047568.01.T01:CDS
AAGACGATTCCCATTGAGAA+CGG 0.569958 8:-88180279 None:intergenic
AATTCCGAAGCTGATTCAAA+GGG 0.570296 8:+88184309 MsG0880047568.01.T01:CDS
CTGGAGGAAGGTGCTTCGCA+GGG 0.580583 8:-88183651 None:intergenic
AAAGAGAAGAAAGAGGGCGA+AGG 0.582063 8:-88180157 None:intergenic
TCTTATATTACCTGAACTGG+AGG 0.586999 8:-88183667 None:intergenic
TTCTCAATAGCAGCGGATCG+TGG 0.587619 8:-88183474 None:intergenic
ATCCGGCACCAGGCATGTCG+AGG 0.589003 8:+88184712 MsG0880047568.01.T01:CDS
ATATTACCTGAACTGGAGGA+AGG 0.594740 8:-88183663 None:intergenic
AATCTTTCAGCAGAAAAGGA+AGG 0.598358 8:-88184444 None:intergenic
ACCACTAAGGTCAATGTGCT+AGG 0.600691 8:-88181163 None:intergenic
GCCCAATTCACATGACAACA+CGG 0.601317 8:+88184605 MsG0880047568.01.T01:CDS
GGACGTAAAGAGAAGAAAGA+GGG 0.601503 8:-88180163 None:intergenic
GACGATTCCCATTGAGAACG+GGG 0.602790 8:-88180277 None:intergenic
GATCCTCGATCTCAAATTTG+GGG 0.605147 8:-88180321 None:intergenic
ACTTTGTGACGCTTGTTGAG+AGG 0.605272 8:-88180364 None:intergenic
TTCCTGAGACTTAAACCCAA+AGG 0.606349 8:-88180721 None:intergenic
AGATATCAAGGCTACTGAAG+AGG 0.606877 8:+88184665 MsG0880047568.01.T01:CDS
AACAGAATGCAAAACCCTAA+CGG 0.610835 8:-88180190 None:intergenic
CTATCTAAGGTAATAGCAGA+AGG 0.611346 8:-88183624 None:intergenic
GTATCAAATCTAACAGCGAA+GGG 0.619004 8:-88180747 None:intergenic
CGCTCATTGACATAGAAGGA+CGG 0.621047 8:-88184368 None:intergenic
GAGTACCAAGAAATGATGGA+TGG 0.630044 8:+88184468 MsG0880047568.01.T01:CDS
TTCAAAGGGATCAAGACACT+GGG 0.632188 8:+88184323 MsG0880047568.01.T01:CDS
TCCCATGTTCTGAAAACGAG+AGG 0.639975 8:-88183553 None:intergenic
TTTAAACTCTAAAGCAAACA+AGG 0.644174 8:+88180822 MsG0880047568.01.T01:CDS
GTTGGCTTAAGAACTTAAGT+CGG 0.644282 8:-88183416 None:intergenic
GTCAACGGAGAAGAAATCGA+AGG 0.648412 8:-88180216 None:intergenic
GGTCGTAAATGATGGAGACA+GGG 0.654834 8:-88183589 None:intergenic
GTGGACAGGCCAGCACACAT+AGG 0.655241 8:+88181356 MsG0880047568.01.T01:CDS
GACTCGAGAGATGTTTATGG+TGG 0.656722 8:+88184687 MsG0880047568.01.T01:CDS
CCCAATTCACATGACAACAC+GGG 0.664172 8:+88184606 MsG0880047568.01.T01:CDS
ATCCTCGATCTCAAATTTGG+GGG 0.664332 8:-88180320 None:intergenic
GTGAGGGTTCTCAATAGCAG+CGG 0.669144 8:-88183481 None:intergenic
AACCTAGAAAGCACACATTG+TGG 0.694172 8:+88181311 MsG0880047568.01.T01:CDS
TGGAAATGTGATGCTCAATG+TGG 0.744777 8:-88184401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATCATTAGAAAAAAT+TGG + Chr8:88182626-88182645 MsG0880047568.01.T01:intron 10.0%
!! AATTATCATTAGAAAAAATT+GGG + Chr8:88182627-88182646 MsG0880047568.01.T01:intron 10.0%
!! TCTATTAAGATTTATTTATT+GGG + Chr8:88181687-88181706 MsG0880047568.01.T01:intron 10.0%
!! TTCTATTAAGATTTATTTAT+TGG + Chr8:88181686-88181705 MsG0880047568.01.T01:intron 10.0%
!! TTTCATTTAAATGTAAAAAA+AGG + Chr8:88182173-88182192 MsG0880047568.01.T01:intron 10.0%
!!! AATAATGTTTACTTTTATTT+TGG + Chr8:88180624-88180643 MsG0880047568.01.T01:intron 10.0%
!!! ATAATGTTTACTTTTATTTT+GGG + Chr8:88180625-88180644 MsG0880047568.01.T01:intron 10.0%
!!! CTTTTTATTTATAGTTTAAT+AGG + Chr8:88183092-88183111 MsG0880047568.01.T01:intron 10.0%
!! AAAGTAAAATAGAAATTCAA+TGG + Chr8:88181098-88181117 MsG0880047568.01.T01:CDS 15.0%
!! ACCTTAAAAAAAATTACAAA+AGG + Chr8:88181781-88181800 MsG0880047568.01.T01:intron 15.0%
!! TAAAATAACAGAAATTAGTT+GGG - Chr8:88182146-88182165 None:intergenic 15.0%
!! TAAATCTATATGATTATGAA+TGG - Chr8:88181435-88181454 None:intergenic 15.0%
!! TGAATTAAAATTAATGTTCA+GGG - Chr8:88182060-88182079 None:intergenic 15.0%
!! TTAAAATAACAGAAATTAGT+TGG - Chr8:88182147-88182166 None:intergenic 15.0%
!!! AATCTCTAATATTTTACATA+GGG - Chr8:88181515-88181534 None:intergenic 15.0%
!!! AATTGATAATACTTTTAATG+CGG + Chr8:88182759-88182778 MsG0880047568.01.T01:intron 15.0%
!!! ACCTTTTGTAATTTTTTTTA+AGG - Chr8:88181785-88181804 None:intergenic 15.0%
!!! ATTATTTTAATGAAGAATCT+TGG + Chr8:88184905-88184924 MsG0880047568.01.T01:three_prime_UTR 15.0%
!!! ATTCAATTTTTACTAAACTT+AGG + Chr8:88182375-88182394 MsG0880047568.01.T01:intron 15.0%
!!! TAAAAGTACATTAATTTTGT+TGG + Chr8:88181453-88181472 MsG0880047568.01.T01:intron 15.0%
!!! TATTTTACTGATATTTTACT+TGG - Chr8:88183970-88183989 None:intergenic 15.0%
!!! TTAATTTTTTTCTTCTTCAT+AGG + Chr8:88184864-88184883 MsG0880047568.01.T01:three_prime_UTR 15.0%
!!! TTCAATTTTTACTAAACTTA+GGG + Chr8:88182376-88182395 MsG0880047568.01.T01:intron 15.0%
!!! TTTTTTTATTGGTAATGTTA+AGG + Chr8:88185063-88185082 MsG0880047568.01.T01:three_prime_UTR 15.0%
!! AAACTTGACCAAATAAATAA+GGG - Chr8:88182474-88182493 None:intergenic 20.0%
!! AACCATAATTAATGAGAAAA+AGG - Chr8:88180656-88180675 None:intergenic 20.0%
!! AATGATTGAAAACTTATCAA+TGG + Chr8:88183807-88183826 MsG0880047568.01.T01:intron 20.0%
!! ACCATAATTAATGAGAAAAA+GGG - Chr8:88180655-88180674 None:intergenic 20.0%
!! CCAAAACACATTAATAAATA+AGG - Chr8:88184243-88184262 None:intergenic 20.0%
!! GTGAATTAAAATTAATGTTC+AGG - Chr8:88182061-88182080 None:intergenic 20.0%
!! TAAACTTGACCAAATAAATA+AGG - Chr8:88182475-88182494 None:intergenic 20.0%
!! TTTATAGTTTAATAGGGTTA+TGG + Chr8:88183099-88183118 MsG0880047568.01.T01:intron 20.0%
!!! ACATTTAAAAATTGGTTCAT+GGG + Chr8:88180894-88180913 MsG0880047568.01.T01:CDS 20.0%
!!! ACTTATTTCTTCTTCTTTTT+CGG + Chr8:88182019-88182038 MsG0880047568.01.T01:intron 20.0%
!!! ATCTCTAATATTTTACATAG+GGG - Chr8:88181514-88181533 None:intergenic 20.0%
!!! ATTAGAGATTGATTTTCAAA+TGG + Chr8:88181525-88181544 MsG0880047568.01.T01:intron 20.0%
!!! ATTTTTTACTTTGCATTGTT+TGG + Chr8:88182497-88182516 MsG0880047568.01.T01:intron 20.0%
!!! CAATCTCTAATATTTTACAT+AGG - Chr8:88181516-88181535 None:intergenic 20.0%
!!! CCTTATTTATTAATGTGTTT+TGG + Chr8:88184240-88184259 MsG0880047568.01.T01:intron 20.0%
!!! GATGTTTTAAAGTTAGATAT+GGG + Chr8:88185111-88185130 MsG0880047568.01.T01:three_prime_UTR 20.0%
!!! TAAACTATGTTTACTTGTTA+AGG + Chr8:88185020-88185039 MsG0880047568.01.T01:three_prime_UTR 20.0%
!!! TCATATTTTCAATAATGCTA+TGG + Chr8:88183135-88183154 MsG0880047568.01.T01:intron 20.0%
!!! TCTTCTAAAATTTGTCAAAT+GGG + Chr8:88184036-88184055 MsG0880047568.01.T01:intron 20.0%
!!! TTAGAGATTGATTTTCAAAT+GGG + Chr8:88181526-88181545 MsG0880047568.01.T01:intron 20.0%
! AAAAGTCAACATAGATATCA+AGG + Chr8:88184653-88184672 MsG0880047568.01.T01:CDS 25.0%
! AAAATTTCTTCTTTGCTTGT+TGG + Chr8:88183782-88183801 MsG0880047568.01.T01:intron 25.0%
! AAATTATGTGCAAAATGCAA+TGG - Chr8:88181976-88181995 None:intergenic 25.0%
! AATATGGACCCTAAAAATAA+AGG + Chr8:88181717-88181736 MsG0880047568.01.T01:intron 25.0%
! AATATGGACCTCAAAAATAA+AGG - Chr8:88182444-88182463 None:intergenic 25.0%
! AGAGAATTAAATTACCACTA+AGG - Chr8:88181179-88181198 None:intergenic 25.0%
! AGTAAACATAGTTTACTTGA+AGG - Chr8:88185015-88185034 None:intergenic 25.0%
! ATGAAAAATCACTTATGTCA+AGG + Chr8:88184538-88184557 MsG0880047568.01.T01:CDS 25.0%
! ATTAGTTCAGTTGAAGTTTA+TGG - Chr8:88183929-88183948 None:intergenic 25.0%
! ATTCATAAATCATTGAACAC+AGG - Chr8:88181234-88181253 None:intergenic 25.0%
! ATTTCATAATCTATGCTTCT+TGG - Chr8:88184014-88184033 None:intergenic 25.0%
! CAGTATAAATCGAAATATGA+AGG + Chr8:88181007-88181026 MsG0880047568.01.T01:intron 25.0%
! GAAGTTATAAAATCACAAGA+TGG - Chr8:88183324-88183343 None:intergenic 25.0%
! GAGTTCCTAATAAAATTCAA+CGG + Chr8:88182801-88182820 MsG0880047568.01.T01:intron 25.0%
! TAATAAAATTCAACGGTACT+AGG + Chr8:88182808-88182827 MsG0880047568.01.T01:intron 25.0%
! TGAAAAATCACTTATGTCAA+GGG + Chr8:88184539-88184558 MsG0880047568.01.T01:CDS 25.0%
! TTATAGTATCTGTGGAATTT+AGG + Chr8:88181628-88181647 MsG0880047568.01.T01:intron 25.0%
!! ATTTTGCACATAATTTTCTC+TGG + Chr8:88181980-88181999 MsG0880047568.01.T01:intron 25.0%
!! CAATTTTTAAATGTGTAGCT+GGG - Chr8:88180888-88180907 None:intergenic 25.0%
!! CACATTTAAAAATTGGTTCA+TGG + Chr8:88180893-88180912 MsG0880047568.01.T01:CDS 25.0%
!! CTTGTGATTTTATAACTTCT+AGG + Chr8:88183325-88183344 MsG0880047568.01.T01:intron 25.0%
!! GATATGTCAAACAAGAATTT+TGG - Chr8:88184789-88184808 None:intergenic 25.0%
!! GTTTTTGCAATACAATGATT+TGG + Chr8:88182907-88182926 MsG0880047568.01.T01:intron 25.0%
!! TAGTACCGTTGAATTTTATT+AGG - Chr8:88182809-88182828 None:intergenic 25.0%
!! TCCCTTTTTCTCATTAATTA+TGG + Chr8:88180651-88180670 MsG0880047568.01.T01:intron 25.0%
!! TCTATGTAGAAAATTTTCGA+TGG - Chr8:88181921-88181940 None:intergenic 25.0%
!! TGACATAAGTGATTTTTCAT+CGG - Chr8:88184538-88184557 None:intergenic 25.0%
!!! AGCTATTTTACTTCAAATCA+GGG - Chr8:88182730-88182749 None:intergenic 25.0%
!!! AGTTGAGTTTAGTCTTTTTA+AGG + Chr8:88182974-88182993 MsG0880047568.01.T01:intron 25.0%
!!! ATTTTGATTGTGTTGCATAA+GGG + Chr8:88183701-88183720 MsG0880047568.01.T01:intron 25.0%
!!! ATTTTTTTCTTCTTCATAGG+AGG + Chr8:88184867-88184886 MsG0880047568.01.T01:three_prime_UTR 25.0%
!!! CTCTTCTAAAATTTGTCAAA+TGG + Chr8:88184035-88184054 MsG0880047568.01.T01:intron 25.0%
!!! GGATGTTTTAAAGTTAGATA+TGG + Chr8:88185110-88185129 MsG0880047568.01.T01:three_prime_UTR 25.0%
!!! TAATTTGCTTATAGTATCTG+TGG + Chr8:88181620-88181639 MsG0880047568.01.T01:intron 25.0%
!!! TATTTTTAGGGTCCATATTA+GGG - Chr8:88181716-88181735 None:intergenic 25.0%
!!! TATTTTTGAGGTCCATATTA+GGG + Chr8:88182445-88182464 MsG0880047568.01.T01:intron 25.0%
!!! TTATTTTTAGGGTCCATATT+AGG - Chr8:88181717-88181736 None:intergenic 25.0%
!!! TTATTTTTGAGGTCCATATT+AGG + Chr8:88182444-88182463 MsG0880047568.01.T01:intron 25.0%
!!! TTTAAACTCTAAAGCAAACA+AGG + Chr8:88180822-88180841 MsG0880047568.01.T01:CDS 25.0%
!!! TTTATTGGTAATGTTAAGGA+TGG + Chr8:88185067-88185086 MsG0880047568.01.T01:three_prime_UTR 25.0%
AACAACAACTAAGTGACATT+GGG - Chr8:88182234-88182253 None:intergenic 30.0%
AACTTATCAATGGAAAGATG+AGG + Chr8:88183817-88183836 MsG0880047568.01.T01:intron 30.0%
AATTACAAAAGGTTAGAGCA+AGG + Chr8:88181792-88181811 MsG0880047568.01.T01:intron 30.0%
AGATTTGATAAGCAAGCTTA+TGG - Chr8:88182266-88182285 None:intergenic 30.0%
AGTTCTTATATTACCTGAAC+TGG - Chr8:88183673-88183692 None:intergenic 30.0%
CACATGATTATTTGCGTATT+TGG + Chr8:88182867-88182886 MsG0880047568.01.T01:intron 30.0%
CCAGCTACACATTTAAAAAT+TGG + Chr8:88180886-88180905 MsG0880047568.01.T01:CDS 30.0%
CTACACTAAACAAATGGAAT+AGG - Chr8:88182539-88182558 None:intergenic 30.0%
GAAATGCTTGTGTACAAAAA+AGG - Chr8:88181659-88181678 None:intergenic 30.0%
GTTCAGGTAATATAAGAACT+TGG + Chr8:88183673-88183692 MsG0880047568.01.T01:intron 30.0%
GTTTCTCTACACTAAACAAA+TGG - Chr8:88182545-88182564 None:intergenic 30.0%
TAACAACAACTAAGTGACAT+TGG - Chr8:88182235-88182254 None:intergenic 30.0%
TACATATTACCTACTACAAC+AGG + Chr8:88181756-88181775 MsG0880047568.01.T01:intron 30.0%
TCTACATAGATCTATGATGT+TGG + Chr8:88181931-88181950 MsG0880047568.01.T01:intron 30.0%
TGAATGATATTGTGAATTGC+AGG + Chr8:88181249-88181268 MsG0880047568.01.T01:intron 30.0%
TTAAACATGATGATCCTAAG+AGG - Chr8:88183897-88183916 None:intergenic 30.0%
TTATGTTGTTAATTCTCCCT+GGG - Chr8:88182203-88182222 None:intergenic 30.0%
TTGCTCTTCCTAGAAAAAAT+CGG + Chr8:88182583-88182602 MsG0880047568.01.T01:intron 30.0%
TTGTAGTAGGTAATATGTAC+AGG - Chr8:88181755-88181774 None:intergenic 30.0%
TTTATGTTGTTAATTCTCCC+TGG - Chr8:88182204-88182223 None:intergenic 30.0%
! AAAGATTGTGATTTGCATCA+AGG + Chr8:88183510-88183529 MsG0880047568.01.T01:CDS 30.0%
! AATTGATAATCACAATACGC+AGG - Chr8:88183227-88183246 None:intergenic 30.0%
! ATTTGAAGTAAAATAGCTGC+TGG + Chr8:88182732-88182751 MsG0880047568.01.T01:intron 30.0%
! CACAATCTTTTAGATTGTGA+GGG - Chr8:88183500-88183519 None:intergenic 30.0%
! CCAATTTTTAAATGTGTAGC+TGG - Chr8:88180889-88180908 None:intergenic 30.0%
! CCATCAAAATTTAGAGTCAA+CGG - Chr8:88180234-88180253 None:intergenic 30.0%
! CTATGTTTACTTGTTAAGGA+TGG + Chr8:88185024-88185043 MsG0880047568.01.T01:three_prime_UTR 30.0%
! TCACAATCTTTTAGATTGTG+AGG - Chr8:88183501-88183520 None:intergenic 30.0%
! TTTAAAAATTGGTTCATGGG+AGG + Chr8:88180897-88180916 MsG0880047568.01.T01:CDS 30.0%
!! ACATTCTGAAATTCCCAAAT+CGG - Chr8:88184824-88184843 None:intergenic 30.0%
!! ACCTAGAAATGTTTTTACAC+GGG - Chr8:88184936-88184955 None:intergenic 30.0%
!! ATAACTTGTTGAAATCGTTG+AGG + Chr8:88181581-88181600 MsG0880047568.01.T01:intron 30.0%
!! ATTTTGACCCGATTTTTTCT+AGG - Chr8:88182594-88182613 None:intergenic 30.0%
!! CACCTAGAAATGTTTTTACA+CGG - Chr8:88184937-88184956 None:intergenic 30.0%
!! CAGCTATTTTACTTCAAATC+AGG - Chr8:88182731-88182750 None:intergenic 30.0%
!! GACTCTAAATTTTGATGGTT+CGG + Chr8:88180236-88180255 MsG0880047568.01.T01:exon 30.0%
!! TTTTGATTGTGTTGCATAAG+GGG + Chr8:88183702-88183721 MsG0880047568.01.T01:intron 30.0%
!!! AATTTTGATGGTTCGGTTTA+TGG + Chr8:88180243-88180262 MsG0880047568.01.T01:exon 30.0%
!!! AGTTTGTTTGCTTTTGAGTT+AGG - Chr8:88182940-88182959 None:intergenic 30.0%
!!! ATGTTGACTTTTGCATCATT+AGG - Chr8:88184645-88184664 None:intergenic 30.0%
!!! ATTTTGATGGTTCGGTTTAT+GGG + Chr8:88180244-88180263 MsG0880047568.01.T01:exon 30.0%
!!! ATTTTTGAGGTCCATATTAG+GGG + Chr8:88182446-88182465 MsG0880047568.01.T01:intron 30.0%
!!! GATTTTGATTGTGTTGCATA+AGG + Chr8:88183700-88183719 MsG0880047568.01.T01:intron 30.0%
!!! GTTTGTTTGCTTTTGAGTTA+GGG - Chr8:88182939-88182958 None:intergenic 30.0%
!!! TATGGTTTTGCGTTTTGTTT+AGG + Chr8:88180669-88180688 MsG0880047568.01.T01:intron 30.0%
AAATCGCTCATTGACATAGA+AGG - Chr8:88184375-88184394 None:intergenic 35.0%
AACACACATGTAATTACGTG+TGG + Chr8:88181200-88181219 MsG0880047568.01.T01:intron 35.0%
AACAGAATGCAAAACCCTAA+CGG - Chr8:88180193-88180212 None:intergenic 35.0%
AAGAATATACCTATGTGTGC+TGG - Chr8:88181368-88181387 None:intergenic 35.0%
AATCTTTCAGCAGAAAAGGA+AGG - Chr8:88184447-88184466 None:intergenic 35.0%
ACACAAGGCAGGATAATAAA+AGG - Chr8:88182094-88182113 None:intergenic 35.0%
ACTATCAACGAGACTCAAAA+TGG - Chr8:88184986-88185005 None:intergenic 35.0%
AGCAAACATCCACATATCAA+AGG - Chr8:88181402-88181421 None:intergenic 35.0%
AGTGAATCAACCATTATCTC+TGG - Chr8:88183444-88183463 None:intergenic 35.0%
ATGTAAAAAAAGGATTCCCC+AGG + Chr8:88182183-88182202 MsG0880047568.01.T01:intron 35.0%
ATTTCCAAAGAAATGGCTTC+AGG + Chr8:88184417-88184436 MsG0880047568.01.T01:CDS 35.0%
CAAAAATAAAGGTCCACCAA+TGG - Chr8:88182433-88182452 None:intergenic 35.0%
CTATAGCAGGTAATATGCAT+GGG + Chr8:88182406-88182425 MsG0880047568.01.T01:intron 35.0%
GAAATATGAAGGTGACTTAG+TGG + Chr8:88181018-88181037 MsG0880047568.01.T01:CDS 35.0%
GAATTGAAAGAGAGTTGGAA+AGG + Chr8:88181865-88181884 MsG0880047568.01.T01:intron 35.0%
GACACTTTGTCAAGAGAATT+CGG + Chr8:88180774-88180793 MsG0880047568.01.T01:CDS 35.0%
GAGAGTTGGAAAGGAATATT+TGG + Chr8:88181874-88181893 MsG0880047568.01.T01:intron 35.0%
GCATCACATTTCCAAAGAAA+TGG + Chr8:88184410-88184429 MsG0880047568.01.T01:CDS 35.0%
GGGAAGAAGCAAAAAAAACA+TGG - Chr8:88182710-88182729 None:intergenic 35.0%
GTATCAAATCTAACAGCGAA+GGG - Chr8:88180750-88180769 None:intergenic 35.0%
GTTGGAAAGGAATATTTGGT+TGG + Chr8:88181878-88181897 MsG0880047568.01.T01:intron 35.0%
TAAAAATAAAGGTCCACCCA+TGG + Chr8:88181728-88181747 MsG0880047568.01.T01:intron 35.0%
TAATGATAAAACCAGCAGCA+GGG - Chr8:88183199-88183218 None:intergenic 35.0%
TAATGCCATCCATCATTTCT+TGG - Chr8:88184476-88184495 None:intergenic 35.0%
TATGTTGTTAATTCTCCCTG+GGG - Chr8:88182202-88182221 None:intergenic 35.0%
TCTTATATTACCTGAACTGG+AGG - Chr8:88183670-88183689 None:intergenic 35.0%
TGCTCTTCCTAGAAAAAATC+GGG + Chr8:88182584-88182603 MsG0880047568.01.T01:intron 35.0%
TGTAAAAAAAGGATTCCCCA+GGG + Chr8:88182184-88182203 MsG0880047568.01.T01:intron 35.0%
TGTATCAAATCTAACAGCGA+AGG - Chr8:88180751-88180770 None:intergenic 35.0%
TTAAGGTAACCTGTTGTAGT+AGG - Chr8:88181768-88181787 None:intergenic 35.0%
TTAATGATAAAACCAGCAGC+AGG - Chr8:88183200-88183219 None:intergenic 35.0%
TTAGTCTCCCTAAAGAAAAG+AGG - Chr8:88181286-88181305 None:intergenic 35.0%
TTGTTATAGATCTGCCTCTT+AGG + Chr8:88183880-88183899 MsG0880047568.01.T01:intron 35.0%
TTTATTGGGAGTCCCTAATA+TGG + Chr8:88181701-88181720 MsG0880047568.01.T01:intron 35.0%
TTTCCAAAGAAATGGCTTCA+GGG + Chr8:88184418-88184437 MsG0880047568.01.T01:CDS 35.0%
! AATTCCGAAGCTGATTCAAA+GGG + Chr8:88184309-88184328 MsG0880047568.01.T01:CDS 35.0%
! ATGTCAATGAGCGATTTTCT+TGG + Chr8:88184378-88184397 MsG0880047568.01.T01:CDS 35.0%
! ATTGGAGTACCAAGAAATGA+TGG + Chr8:88184464-88184483 MsG0880047568.01.T01:CDS 35.0%
! CAATCAACGACAGATTTTAC+CGG + Chr8:88181334-88181353 MsG0880047568.01.T01:CDS 35.0%
! CATGTTTTGCAATGTGAACA+AGG + Chr8:88183351-88183370 MsG0880047568.01.T01:CDS 35.0%
! CTATCTAAGGTAATAGCAGA+AGG - Chr8:88183627-88183646 None:intergenic 35.0%
! GTTGGCTTAAGAACTTAAGT+CGG - Chr8:88183419-88183438 None:intergenic 35.0%
! TAATTCCGAAGCTGATTCAA+AGG + Chr8:88184308-88184327 MsG0880047568.01.T01:CDS 35.0%
! TGCATGTGGTTTTTCGTTTT+GGG + Chr8:88180934-88180953 MsG0880047568.01.T01:intron 35.0%
! TGGTTTGTCATAAACTGTGT+GGG + Chr8:88181473-88181492 MsG0880047568.01.T01:intron 35.0%
! TTCCTTTTCTGCTGAAAGAT+TGG + Chr8:88184446-88184465 MsG0880047568.01.T01:CDS 35.0%
!! CATTCTGAAATTCCCAAATC+GGG - Chr8:88184823-88184842 None:intergenic 35.0%
!! TTGGTTTGTCATAAACTGTG+TGG + Chr8:88181472-88181491 MsG0880047568.01.T01:intron 35.0%
!!! ATGGGTGGACCTTTATTTTT+AGG - Chr8:88181729-88181748 None:intergenic 35.0%
!!! CCGTTGACTCTAAATTTTGA+TGG + Chr8:88180231-88180250 MsG0880047568.01.T01:exon 35.0%
!!! GGTTTTTGTTTCTGTTATGC+AGG - Chr8:88182125-88182144 None:intergenic 35.0%
!!! TGGGTGGACCTTTATTTTTA+GGG - Chr8:88181728-88181747 None:intergenic 35.0%
!!! TTGGTGGACCTTTATTTTTG+AGG + Chr8:88182433-88182452 MsG0880047568.01.T01:intron 35.0%
AAAGCCAATTGTCCTGATGA+TGG + Chr8:88181139-88181158 MsG0880047568.01.T01:CDS 40.0%
AAATAAGGGAGCCCCTAATA+TGG - Chr8:88182460-88182479 None:intergenic 40.0%
AAGACGATTCCCATTGAGAA+CGG - Chr8:88180282-88180301 None:intergenic 40.0%
AATGTGTGCTTTCTAGGTTG+AGG - Chr8:88181310-88181329 None:intergenic 40.0%
ACATCTGCTTAACGACAATC+AGG + Chr8:88184500-88184519 MsG0880047568.01.T01:CDS 40.0%
AGATATCAAGGCTACTGAAG+AGG + Chr8:88184665-88184684 MsG0880047568.01.T01:CDS 40.0%
AGATGTTTATGGTGGCAATC+CGG + Chr8:88184695-88184714 MsG0880047568.01.T01:CDS 40.0%
AGGACGTAAAGAGAAGAAAG+AGG - Chr8:88180167-88180186 None:intergenic 40.0%
AGGTAATATGTACAGGTCCA+TGG - Chr8:88181748-88181767 None:intergenic 40.0%
ATATTACCTGAACTGGAGGA+AGG - Chr8:88183666-88183685 None:intergenic 40.0%
ATCCTCGATCTCAAATTTGG+GGG - Chr8:88180323-88180342 None:intergenic 40.0%
ATGCAAAACCCTAACGGAAA+AGG - Chr8:88180187-88180206 None:intergenic 40.0%
ATGCAGGAAGAGATTACACA+AGG - Chr8:88182109-88182128 None:intergenic 40.0%
ATGTCCTGTTCCATCTTGTT+TGG + Chr8:88183293-88183312 MsG0880047568.01.T01:intron 40.0%
ATGTCGAGGAAAGACTCATT+TGG + Chr8:88184726-88184745 MsG0880047568.01.T01:CDS 40.0%
ATTCAAAGGGATCAAGACAC+TGG + Chr8:88184322-88184341 MsG0880047568.01.T01:CDS 40.0%
CTCCAATCTTTCAGCAGAAA+AGG - Chr8:88184451-88184470 None:intergenic 40.0%
CTTGTTTGGGAAGTTCTTGA+GGG + Chr8:88181067-88181086 MsG0880047568.01.T01:CDS 40.0%
GATCCTCGATCTCAAATTTG+GGG - Chr8:88180324-88180343 None:intergenic 40.0%
GATCTCAAATTTGGGGGAAA+TGG - Chr8:88180317-88180336 None:intergenic 40.0%
GCCCGTGTAAAAACATTTCT+AGG + Chr8:88184932-88184951 MsG0880047568.01.T01:three_prime_UTR 40.0%
GCTATAGCAGGTAATATGCA+TGG + Chr8:88182405-88182424 MsG0880047568.01.T01:intron 40.0%
GGAAGGAATTGAAAGAGAGT+TGG + Chr8:88181860-88181879 MsG0880047568.01.T01:intron 40.0%
GGACGTAAAGAGAAGAAAGA+GGG - Chr8:88180166-88180185 None:intergenic 40.0%
GGAGCATGTTGATCTTGAAT+GGG - Chr8:88180346-88180365 None:intergenic 40.0%
GGATCCTCGATCTCAAATTT+GGG - Chr8:88180325-88180344 None:intergenic 40.0%
GGGATCAAATAAAACTGCCT+GGG + Chr8:88184343-88184362 MsG0880047568.01.T01:CDS 40.0%
GGTAATATGTACAGGTCCAT+GGG - Chr8:88181747-88181766 None:intergenic 40.0%
TAAGAATCCCCGTTCTCAAT+GGG + Chr8:88180270-88180289 MsG0880047568.01.T01:CDS 40.0%
TACAGCTGTCCTTTGATATG+TGG + Chr8:88181390-88181409 MsG0880047568.01.T01:intron 40.0%
TCCTGAGACTTAAACCCAAA+GGG - Chr8:88180723-88180742 None:intergenic 40.0%
TCTACGCTGTCTCTTACAAA+TGG + Chr8:88184569-88184588 MsG0880047568.01.T01:CDS 40.0%
TGATCCCTTTGAATCAGCTT+CGG - Chr8:88184316-88184335 None:intergenic 40.0%
TGCATATTACCTGCTATAGC+AGG - Chr8:88182405-88182424 None:intergenic 40.0%
TGCTTCAGTTGAAAAGCTGA+AGG + Chr8:88180852-88180871 MsG0880047568.01.T01:CDS 40.0%
TGGAAATGTGATGCTCAATG+TGG - Chr8:88184404-88184423 None:intergenic 40.0%
TGGGATCAAATAAAACTGCC+TGG + Chr8:88184342-88184361 MsG0880047568.01.T01:CDS 40.0%
TTCAAAGGGATCAAGACACT+GGG + Chr8:88184323-88184342 MsG0880047568.01.T01:CDS 40.0%
TTCCAAAGAAATGGCTTCAG+GGG + Chr8:88184419-88184438 MsG0880047568.01.T01:CDS 40.0%
TTCCCAAACAAGCTTCTGTT+TGG - Chr8:88181059-88181078 None:intergenic 40.0%
TTCCTGAGACTTAAACCCAA+AGG - Chr8:88180724-88180743 None:intergenic 40.0%
TTCTCTGGATGTTGAGAACT+TGG + Chr8:88181995-88182014 MsG0880047568.01.T01:intron 40.0%
TTTGGAAGAGATGCAATTCG+AGG - Chr8:88184771-88184790 None:intergenic 40.0%
! AACCTAGAAAGCACACATTG+TGG + Chr8:88181311-88181330 MsG0880047568.01.T01:CDS 40.0%
! ACTTGTTGAAATCGTTGAGG+AGG + Chr8:88181584-88181603 MsG0880047568.01.T01:intron 40.0%
! AGGAGCATGTTGATCTTGAA+TGG - Chr8:88180347-88180366 None:intergenic 40.0%
! CAGAAGATTAGTCCCGATTT+GGG + Chr8:88184808-88184827 MsG0880047568.01.T01:exon 40.0%
! CAGACAGCCTCTTTTCTTTA+GGG + Chr8:88181276-88181295 MsG0880047568.01.T01:CDS 40.0%
! CAGTTTGGTAGTTTCACAGA+AGG + Chr8:88181826-88181845 MsG0880047568.01.T01:intron 40.0%
! CTGCATGTGGTTTTTCGTTT+TGG + Chr8:88180933-88180952 MsG0880047568.01.T01:intron 40.0%
! CTTTACGTCCTTTTCCGTTA+GGG + Chr8:88180176-88180195 MsG0880047568.01.T01:five_prime_UTR 40.0%
! GAGTACCAAGAAATGATGGA+TGG + Chr8:88184468-88184487 MsG0880047568.01.T01:CDS 40.0%
! GCACTTTTCTTGAGTGCAAT+GGG + Chr8:88185089-88185108 MsG0880047568.01.T01:three_prime_UTR 40.0%
! TAGGGGCTCCCTTATTTATT+TGG + Chr8:88182463-88182482 MsG0880047568.01.T01:intron 40.0%
! TCAGAAGATTAGTCCCGATT+TGG + Chr8:88184807-88184826 MsG0880047568.01.T01:exon 40.0%
! TCTTTACGTCCTTTTCCGTT+AGG + Chr8:88180175-88180194 MsG0880047568.01.T01:five_prime_UTR 40.0%
! TGCCAAACAGAAGCTTGTTT+GGG + Chr8:88181054-88181073 MsG0880047568.01.T01:CDS 40.0%
! TGTCCTGTTCCATCTTGTTT+GGG + Chr8:88183294-88183313 MsG0880047568.01.T01:intron 40.0%
! TGTGATTTGCATCAAGGCAA+GGG + Chr8:88183516-88183535 MsG0880047568.01.T01:CDS 40.0%
! TTGCCAAACAGAAGCTTGTT+TGG + Chr8:88181053-88181072 MsG0880047568.01.T01:CDS 40.0%
! TTGTGATTTGCATCAAGGCA+AGG + Chr8:88183515-88183534 MsG0880047568.01.T01:CDS 40.0%
AAAGAGAAGAAAGAGGGCGA+AGG - Chr8:88180160-88180179 None:intergenic 45.0%
AAGCCAACAGCCAGAGATAA+TGG + Chr8:88183431-88183450 MsG0880047568.01.T01:CDS 45.0%
AAGGAATGAGAGGGACAGTT+TGG + Chr8:88181811-88181830 MsG0880047568.01.T01:intron 45.0%
AATATGCATGGGTCCATTGG+TGG + Chr8:88182417-88182436 MsG0880047568.01.T01:intron 45.0%
AATATGTACAGGTCCATGGG+TGG - Chr8:88181744-88181763 None:intergenic 45.0%
AATGTGCTAGGTCCATCATC+AGG - Chr8:88181154-88181173 None:intergenic 45.0%
ACCACTAAGGTCAATGTGCT+AGG - Chr8:88181166-88181185 None:intergenic 45.0%
ACCTAGCACATTGACCTTAG+TGG + Chr8:88181162-88181181 MsG0880047568.01.T01:CDS 45.0%
ACTTAAGTCGGTCGTTACAC+TGG - Chr8:88183407-88183426 None:intergenic 45.0%
ACTTAATGAGCCTAGCCCTT+TGG + Chr8:88180705-88180724 MsG0880047568.01.T01:CDS 45.0%
AGACGATTCCCATTGAGAAC+GGG - Chr8:88180281-88180300 None:intergenic 45.0%
AGACTTAAACCCAAAGGGCT+AGG - Chr8:88180718-88180737 None:intergenic 45.0%
AGGAAGAGATTACACAAGGC+AGG - Chr8:88182105-88182124 None:intergenic 45.0%
AGGTCCATCATCAGGACAAT+TGG - Chr8:88181146-88181165 None:intergenic 45.0%
AGGTTAGAGCAAGGAATGAG+AGG + Chr8:88181801-88181820 MsG0880047568.01.T01:intron 45.0%
ATCCCCTGAAGCCATTTCTT+TGG - Chr8:88184424-88184443 None:intergenic 45.0%
ATGTCATGCTAGCTAGTGCT+TGG + Chr8:88182308-88182327 MsG0880047568.01.T01:intron 45.0%
CAACCATTATCTCTGGCTGT+TGG - Chr8:88183437-88183456 None:intergenic 45.0%
CCCAATTCACATGACAACAC+GGG + Chr8:88184606-88184625 MsG0880047568.01.T01:CDS 45.0%
CCCGTGTTGTCATGTGAATT+GGG - Chr8:88184609-88184628 None:intergenic 45.0%
CCTAAAGAAAAGAGGCTGTC+TGG - Chr8:88181278-88181297 None:intergenic 45.0%
CGCTCATTGACATAGAAGGA+CGG - Chr8:88184371-88184390 None:intergenic 45.0%
CTAAGAATCCCCGTTCTCAA+TGG + Chr8:88180269-88180288 MsG0880047568.01.T01:CDS 45.0%
CTCAAATTTGGGGGAAATGG+AGG - Chr8:88180314-88180333 None:intergenic 45.0%
CTTAATGAGCCTAGCCCTTT+GGG + Chr8:88180706-88180725 MsG0880047568.01.T01:CDS 45.0%
GACTCGAGAGATGTTTATGG+TGG + Chr8:88184687-88184706 MsG0880047568.01.T01:CDS 45.0%
GAGGACTCGAGAGATGTTTA+TGG + Chr8:88184684-88184703 MsG0880047568.01.T01:CDS 45.0%
GATGGAGTTCCCAAACAAGA+TGG - Chr8:88183306-88183325 None:intergenic 45.0%
GCCCAATTCACATGACAACA+CGG + Chr8:88184605-88184624 MsG0880047568.01.T01:CDS 45.0%
GCTTGTTTGGGAAGTTCTTG+AGG + Chr8:88181066-88181085 MsG0880047568.01.T01:CDS 45.0%
GGGATCCTCGATCTCAAATT+TGG - Chr8:88180326-88180345 None:intergenic 45.0%
GGTAATATGCATGGGTCCAT+TGG + Chr8:88182414-88182433 MsG0880047568.01.T01:intron 45.0%
GGTTAGAGCAAGGAATGAGA+GGG + Chr8:88181802-88181821 MsG0880047568.01.T01:intron 45.0%
GTCAACGGAGAAGAAATCGA+AGG - Chr8:88180219-88180238 None:intergenic 45.0%
GTTCCCAAACAAGATGGAAC+AGG - Chr8:88183300-88183319 None:intergenic 45.0%
TACATCGCTTCTGTTGCATG+TGG - Chr8:88184288-88184307 None:intergenic 45.0%
TACATTCGAGACTCTGCATG+TGG + Chr8:88180920-88180939 MsG0880047568.01.T01:intron 45.0%
TGCCACAATGTGTGCTTTCT+AGG - Chr8:88181316-88181335 None:intergenic 45.0%
TGGAGAAGAGTGAAGTGGTT+GGG + Chr8:88182328-88182347 MsG0880047568.01.T01:intron 45.0%
TTAGGGTAACCTGCTATAGC+AGG + Chr8:88182393-88182412 MsG0880047568.01.T01:intron 45.0%
TTGAAATCGTTGAGGAGGAG+TGG + Chr8:88181589-88181608 MsG0880047568.01.T01:intron 45.0%
TTGGAGAAGAGTGAAGTGGT+TGG + Chr8:88182327-88182346 MsG0880047568.01.T01:intron 45.0%
TTGTCTGTGCAGCATCTACA+TGG + Chr8:88184175-88184194 MsG0880047568.01.T01:intron 45.0%
! ACTTTGTGACGCTTGTTGAG+AGG - Chr8:88180367-88180386 None:intergenic 45.0%
! CCAGACAGCCTCTTTTCTTT+AGG + Chr8:88181275-88181294 MsG0880047568.01.T01:CDS 45.0%
! GCCTCTCGTTTTCAGAACAT+GGG + Chr8:88183552-88183571 MsG0880047568.01.T01:CDS 45.0%
! GGCACTTTTCTTGAGTGCAA+TGG + Chr8:88185088-88185107 MsG0880047568.01.T01:three_prime_UTR 45.0%
! GGTAGTTTCACAGAAGGCAT+TGG + Chr8:88181832-88181851 MsG0880047568.01.T01:intron 45.0%
! GGTCGTAAATGATGGAGACA+GGG - Chr8:88183592-88183611 None:intergenic 45.0%
! TCAACGACAGATTTTACCGG+TGG + Chr8:88181337-88181356 MsG0880047568.01.T01:CDS 45.0%
! TGCCTCTCGTTTTCAGAACA+TGG + Chr8:88183551-88183570 MsG0880047568.01.T01:CDS 45.0%
! TTCCCCCAAATTTGAGATCG+AGG + Chr8:88180318-88180337 MsG0880047568.01.T01:CDS 45.0%
!! GTTTCACAGAAGGCATTGGA+AGG + Chr8:88181836-88181855 MsG0880047568.01.T01:intron 45.0%
!! TCATAGGAGGCACTAGCATT+TGG + Chr8:88184880-88184899 MsG0880047568.01.T01:three_prime_UTR 45.0%
!! TCCCATGTTCTGAAAACGAG+AGG - Chr8:88183556-88183575 None:intergenic 45.0%
!!! TTTTTATTTATAGTTTAATA+GGG + Chr8:88183093-88183112 MsG0880047568.01.T01:intron 5.0%
!!! TTTTTTAACTTTTTTTTTAT+TGG + Chr8:88185052-88185071 MsG0880047568.01.T01:three_prime_UTR 5.0%
AAGAAAGAGGGCGAAGGAGA+AGG - Chr8:88180154-88180173 None:intergenic 50.0%
AGAAAGAGGGCGAAGGAGAA+GGG - Chr8:88180153-88180172 None:intergenic 50.0%
AGCAGAAGGATCACTGTGCT+CGG - Chr8:88183613-88183632 None:intergenic 50.0%
CTGTGCTCGGTCGTAAATGA+TGG - Chr8:88183600-88183619 None:intergenic 50.0%
GACAACACGGGCTCTATTGA+AGG + Chr8:88184618-88184637 MsG0880047568.01.T01:CDS 50.0%
GACGATTCCCATTGAGAACG+GGG - Chr8:88180280-88180299 None:intergenic 50.0%
GATACATTCTTCCCTGCTGC+TGG + Chr8:88183185-88183204 MsG0880047568.01.T01:intron 50.0%
GATGGAGACAGGGATGAATG+AGG - Chr8:88183582-88183601 None:intergenic 50.0%
GCCCGTGTTGTCATGTGAAT+TGG - Chr8:88184610-88184629 None:intergenic 50.0%
GTGAGGGTTCTCAATAGCAG+CGG - Chr8:88183484-88183503 None:intergenic 50.0%
GTGCTTGGAGAAGAGTGAAG+TGG + Chr8:88182323-88182342 MsG0880047568.01.T01:intron 50.0%
TTCGCAGGGCACACTATCTA+AGG - Chr8:88183640-88183659 None:intergenic 50.0%
TTCTCAATAGCAGCGGATCG+TGG - Chr8:88183477-88183496 None:intergenic 50.0%
TTGCATCAAGGCAAGGGCAA+TGG + Chr8:88183522-88183541 MsG0880047568.01.T01:CDS 50.0%
! ATGTGAATTGGGCACTGCTG+GGG - Chr8:88184598-88184617 None:intergenic 50.0%
! CATGTGAATTGGGCACTGCT+GGG - Chr8:88184599-88184618 None:intergenic 50.0%
! CGGTCGTAAATGATGGAGAC+AGG - Chr8:88183593-88183612 None:intergenic 50.0%
! GACAGATTTTACCGGTGGAC+AGG + Chr8:88181342-88181361 MsG0880047568.01.T01:CDS 50.0%
! GCCCTTTGGGTTTAAGTCTC+AGG + Chr8:88180719-88180738 MsG0880047568.01.T01:CDS 50.0%
! TCATGTGAATTGGGCACTGC+TGG - Chr8:88184600-88184619 None:intergenic 50.0%
!! AGAAGGCATTGGAAGGTGGA+AGG + Chr8:88181843-88181862 MsG0880047568.01.T01:intron 50.0%
!! TCACAGAAGGCATTGGAAGG+TGG + Chr8:88181839-88181858 MsG0880047568.01.T01:intron 50.0%
ATCGTTGAGGAGGAGTGGTC+AGG + Chr8:88181594-88181613 MsG0880047568.01.T01:intron 55.0%
GAGTCTTTCCTCGACATGCC+TGG - Chr8:88184723-88184742 None:intergenic 55.0%
! GAAGCACCTTCCTCCAGTTC+AGG + Chr8:88183657-88183676 MsG0880047568.01.T01:CDS 55.0%
! TGTGAATTGGGCACTGCTGG+GGG - Chr8:88184597-88184616 None:intergenic 55.0%
GACATAGAAGGACGGAGCCC+AGG - Chr8:88184363-88184382 None:intergenic 60.0%
GTGGACAGGCCAGCACACAT+AGG + Chr8:88181356-88181375 MsG0880047568.01.T01:CDS 60.0%
TATGGTGGCAATCCGGCACC+AGG + Chr8:88184702-88184721 MsG0880047568.01.T01:CDS 60.0%
TTCCTCGACATGCCTGGTGC+CGG - Chr8:88184717-88184736 None:intergenic 60.0%
! ATGTGTGCTGGCCTGTCCAC+CGG - Chr8:88181356-88181375 None:intergenic 60.0%
!! ACTGGAGGAAGGTGCTTCGC+AGG - Chr8:88183655-88183674 None:intergenic 60.0%
!! CTGGAGGAAGGTGCTTCGCA+GGG - Chr8:88183654-88183673 None:intergenic 60.0%
ATCCGGCACCAGGCATGTCG+AGG + Chr8:88184712-88184731 MsG0880047568.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 88180140 88185149 88180140 ID=MsG0880047568.01;Name=MsG0880047568.01
Chr8 mRNA 88180140 88185149 88180140 ID=MsG0880047568.01.T01;Parent=MsG0880047568.01;Name=MsG0880047568.01.T01;_AED=0.44;_eAED=0.44;_QI=110|1|1|1|0.8|0.83|6|331|498
Chr8 exon 88180140 88180384 88180140 ID=MsG0880047568.01.T01:exon:18610;Parent=MsG0880047568.01.T01
Chr8 exon 88180691 88180918 88180691 ID=MsG0880047568.01.T01:exon:18611;Parent=MsG0880047568.01.T01
Chr8 exon 88181010 88181183 88181010 ID=MsG0880047568.01.T01:exon:18612;Parent=MsG0880047568.01.T01
Chr8 exon 88181271 88181377 88181271 ID=MsG0880047568.01.T01:exon:18613;Parent=MsG0880047568.01.T01
Chr8 exon 88183347 88183678 88183347 ID=MsG0880047568.01.T01:exon:18614;Parent=MsG0880047568.01.T01
Chr8 exon 88184298 88185149 88184298 ID=MsG0880047568.01.T01:exon:18615;Parent=MsG0880047568.01.T01
Chr8 five_prime_UTR 88180140 88180249 88180140 ID=MsG0880047568.01.T01:five_prime_utr;Parent=MsG0880047568.01.T01
Chr8 CDS 88180250 88180384 88180250 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 CDS 88180691 88180918 88180691 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 CDS 88181010 88181183 88181010 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 CDS 88181271 88181377 88181271 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 CDS 88183347 88183678 88183347 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 CDS 88184298 88184818 88184298 ID=MsG0880047568.01.T01:cds;Parent=MsG0880047568.01.T01
Chr8 three_prime_UTR 88184819 88185149 88184819 ID=MsG0880047568.01.T01:three_prime_utr;Parent=MsG0880047568.01.T01
Gene Sequence

>MsG0880047568.01.T01

ATGGTTCGGTTTATGGGTTCTAAGAATCCCCGTTCTCAATGGGAATCGTCTTCTGCTTCATCCTCCATTTCCCCCAAATTTGAGATCGAGGATCCCATTCAAGATCAACATGCTCCTCTCAACAAGCGTCACAAAGCTACAAATGATATACTTAATGAGCCTAGCCCTTTGGGTTTAAGTCTCAGGAAGAGCCCTTCGCTGTTAGATTTGATACAAATGACACTTTGTCAAGAGAATTCGGTTAATGCAAATACTGCAAATGATAATTTAAACTCTAAAGCAAACAAGGACGCTCGTGCTTCAGTTGAAAAGCTGAAGGCTTCAAATTTCCCAGCTACACATTTAAAAATTGGTTCATGGGAGTATAAATCGAAATATGAAGGTGACTTAGTGGCAAAGTGTTACTTTGCCAAACAGAAGCTTGTTTGGGAAGTTCTTGAGGGTGAGCTGAAAAGTAAAATAGAAATTCAATGGTCTGACATCAGTCAACTTAAAGCCAATTGTCCTGATGATGGACCTAGCACATTGACCTTAGTGGTTGCCAGACAGCCTCTTTTCTTTAGGGAGACTAATCCTCAACCTAGAAAGCACACATTGTGGCAATCAACGACAGATTTTACCGGTGGACAGGCCAGCACACATAGGCAGCATGTTTTGCAATGTGAACAAGGACTGTTGATCAAGCATTATGAAAAGCTTGTCCAGTGTAACGACCGACTTAAGTTCTTAAGCCAACAGCCAGAGATAATGGTTGATTCACTTCATTTTGATCCACGATCCGCTGCTATTGAGAACCCTCACAATCTAAAAGATTGTGATTTGCATCAAGGCAAGGGCAATGGATCAGCTGCCTCTCGTTTTCAGAACATGGGATCTCCTCATTCATCCCTGTCTCCATCATTTACGACCGAGCACAGTGATCCTTCTGCTATTACCTTAGATAGTGTGCCCTGCGAAGCACCTTCCTCCAGTTCAGAAGCGATGTATAATTCCGAAGCTGATTCAAAGGGATCAAGACACTGGGATCAAATAAAACTGCCTGGGCTCCGTCCTTCTATGTCAATGAGCGATTTTCTTGGCCACATTGAGCATCACATTTCCAAAGAAATGGCTTCAGGGGATCCTTCCTTTTCTGCTGAAAGATTGGAGTACCAAGAAATGATGGATGGCATTACACAACATCTGCTTAACGACAATCAGGTTGCAACAGACTCCGATGAAAAATCACTTATGTCAAGGGTCAATTCTCTACGCTGTCTCTTACAAATGGATCCCCCAGCAGTGCCCAATTCACATGACAACACGGGCTCTATTGAAGGACCTAATGATGCAAAAGTCAACATAGATATCAAGGCTACTGAAGAGGACTCGAGAGATGTTTATGGTGGCAATCCGGCACCAGGCATGTCGAGGAAAGACTCATTTGGAGATTTGCTTCTTAGTCTTCCTCGAATTGCATCTCTTCCAAAATTCTTGTTTGACATATCAGAAGATTAG

Protein sequence

>MsG0880047568.01.T01

MVRFMGSKNPRSQWESSSASSSISPKFEIEDPIQDQHAPLNKRHKATNDILNEPSPLGLSLRKSPSLLDLIQMTLCQENSVNANTANDNLNSKANKDARASVEKLKASNFPATHLKIGSWEYKSKYEGDLVAKCYFAKQKLVWEVLEGELKSKIEIQWSDISQLKANCPDDGPSTLTLVVARQPLFFRETNPQPRKHTLWQSTTDFTGGQASTHRQHVLQCEQGLLIKHYEKLVQCNDRLKFLSQQPEIMVDSLHFDPRSAAIENPHNLKDCDLHQGKGNGSAASRFQNMGSPHSSLSPSFTTEHSDPSAITLDSVPCEAPSSSSEAMYNSEADSKGSRHWDQIKLPGLRPSMSMSDFLGHIEHHISKEMASGDPSFSAERLEYQEMMDGITQHLLNDNQVATDSDEKSLMSRVNSLRCLLQMDPPAVPNSHDNTGSIEGPNDAKVNIDIKATEEDSRDVYGGNPAPGMSRKDSFGDLLLSLPRIASLPKFLFDISED*