Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015637.01.T01 | XP_013460839.1 | 94.22 | 692 | 7 | 1 | 1 | 692 | 1 | 659 | 0 | 1315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015637.01.T01 | Q9FEP7 | 72.279 | 689 | 153 | 5 | 1 | 688 | 1 | 652 | 0 | 966 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015637.01.T01 | A0A072V0K2 | 94.220 | 692 | 7 | 1 | 1 | 692 | 1 | 659 | 0.0 | 1315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048016.01 | MsG0380015637.01 | 0.806931 | 6.471904e-50 | 3.557579e-47 |
| MsG0180003357.01 | MsG0380015637.01 | 0.800674 | 1.290352e-48 | 6.044330e-46 |
| MsG0180004869.01 | MsG0380015637.01 | 0.827808 | 1.275074e-54 | 1.244176e-51 |
| MsG0280006440.01 | MsG0380015637.01 | 0.826223 | 3.052329e-54 | 2.845038e-51 |
| MsG0280011073.01 | MsG0380015637.01 | 0.800660 | 1.298775e-48 | 6.081697e-46 |
| MsG0380012184.01 | MsG0380015637.01 | 0.820657 | 6.108065e-53 | 4.862103e-50 |
| MsG0380013117.01 | MsG0380015637.01 | 0.811681 | 6.200657e-51 | 3.862613e-48 |
| MsG0380013471.01 | MsG0380015637.01 | 0.818863 | 1.569609e-52 | 1.188856e-49 |
| MsG0380014727.01 | MsG0380015637.01 | 0.808943 | 2.416265e-50 | 1.399941e-47 |
| MsG0380014866.01 | MsG0380015637.01 | 0.808509 | 2.990482e-50 | 1.713073e-47 |
| MsG0380015637.01 | MsG0380015745.01 | 0.811916 | 5.510205e-51 | 3.454135e-48 |
| MsG0380015637.01 | MsG0380016182.01 | 0.823014 | 1.739658e-53 | 1.480175e-50 |
| MsG0380015637.01 | MsG0380017037.01 | 0.852829 | 3.570657e-61 | 7.558370e-58 |
| MsG0380015637.01 | MsG0480018847.01 | 0.815467 | 9.107090e-52 | 6.284302e-49 |
| MsG0380015637.01 | MsG0480022330.01 | 0.809409 | 1.919330e-50 | 1.126083e-47 |
| MsG0380015637.01 | MsG0480023641.01 | 0.846653 | 1.897936e-59 | 3.289749e-56 |
| MsG0380015637.01 | MsG0580024829.01 | 0.828431 | 9.023781e-55 | 8.967843e-52 |
| MsG0380015637.01 | MsG0580024862.01 | 0.829949 | 3.865863e-55 | 4.015806e-52 |
| MsG0380015637.01 | MsG0780037848.01 | 0.811736 | 6.029456e-51 | 3.761863e-48 |
| MsG0380015637.01 | MsG0880042035.01 | 0.815008 | 1.151895e-51 | 7.849201e-49 |
| MsG0380015637.01 | MsG0880042743.01 | 0.824553 | 7.584405e-54 | 6.740653e-51 |
| MsG0380015637.01 | MsG0880044638.01 | 0.805868 | 1.084419e-49 | 5.801100e-47 |
| MsG0380015637.01 | MsG0880047152.01 | 0.815280 | 1.002295e-51 | 6.880531e-49 |
| MsG0280006669.01 | MsG0380015637.01 | 0.850622 | 1.507126e-60 | 2.970029e-57 |
| MsG0280008932.01 | MsG0380015637.01 | 0.833491 | 5.172368e-56 | 5.966080e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027598.01 | MsG0380015637.01 | PPI |
| MsG0580027708.01 | MsG0380015637.01 | PPI |
| MsG0580027598.01 | MsG0380015637.01 | PPI |
| MsG0480018464.01 | MsG0380015637.01 | PPI |
| MsG0580027708.01 | MsG0380015637.01 | PPI |
| MsG0580027598.01 | MsG0380015637.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015637.01.T01 | MTR_3g073780 | 94.220 | 692 | 7 | 1 | 1 | 692 | 1 | 659 | 0.0 | 1315 |
| MsG0380015637.01.T01 | MTR_3g073780 | 93.861 | 619 | 5 | 1 | 1 | 619 | 1 | 586 | 0.0 | 1170 |
| MsG0380015637.01.T01 | MTR_5g061880 | 80.000 | 690 | 102 | 3 | 4 | 692 | 1 | 655 | 0.0 | 1119 |
| MsG0380015637.01.T01 | MTR_3g073780 | 93.581 | 592 | 5 | 1 | 1 | 592 | 1 | 559 | 0.0 | 1111 |
| MsG0380015637.01.T01 | MTR_2g008470 | 66.616 | 659 | 183 | 4 | 30 | 687 | 32 | 654 | 0.0 | 885 |
| MsG0380015637.01.T01 | MTR_2g008470 | 66.616 | 659 | 183 | 4 | 30 | 687 | 51 | 673 | 0.0 | 885 |
| MsG0380015637.01.T01 | MTR_1g071530 | 50.515 | 679 | 291 | 4 | 23 | 692 | 3 | 645 | 0.0 | 683 |
| MsG0380015637.01.T01 | MTR_7g095430 | 49.694 | 654 | 292 | 3 | 33 | 685 | 18 | 635 | 0.0 | 683 |
| MsG0380015637.01.T01 | MTR_2g102243 | 50.530 | 661 | 290 | 3 | 33 | 692 | 23 | 647 | 0.0 | 681 |
| MsG0380015637.01.T01 | MTR_4g084620 | 49.031 | 671 | 303 | 5 | 17 | 685 | 1 | 634 | 0.0 | 672 |
| MsG0380015637.01.T01 | MTR_5g061860 | 52.381 | 651 | 274 | 7 | 38 | 684 | 28 | 646 | 0.0 | 669 |
| MsG0380015637.01.T01 | MTR_4g011970 | 49.251 | 668 | 288 | 6 | 33 | 692 | 30 | 654 | 0.0 | 662 |
| MsG0380015637.01.T01 | MTR_3g087740 | 51.101 | 681 | 278 | 10 | 11 | 684 | 17 | 649 | 0.0 | 662 |
| MsG0380015637.01.T01 | MTR_4g084640 | 47.807 | 684 | 316 | 4 | 9 | 692 | 2 | 644 | 0.0 | 657 |
| MsG0380015637.01.T01 | MTR_3g073730 | 49.333 | 675 | 294 | 6 | 13 | 684 | 23 | 652 | 0.0 | 655 |
| MsG0380015637.01.T01 | MTR_7g095430 | 50.510 | 588 | 254 | 3 | 33 | 619 | 18 | 569 | 0.0 | 625 |
| MsG0380015637.01.T01 | MTR_2g102243 | 51.361 | 588 | 249 | 3 | 33 | 619 | 23 | 574 | 0.0 | 622 |
| MsG0380015637.01.T01 | MTR_5g061860 | 54.919 | 559 | 216 | 7 | 38 | 592 | 28 | 554 | 0.0 | 598 |
| MsG0380015637.01.T01 | MTR_6g086170 | 41.641 | 658 | 344 | 5 | 28 | 684 | 5 | 623 | 0.0 | 558 |
| MsG0380015637.01.T01 | MTR_3g087730 | 39.296 | 682 | 357 | 9 | 9 | 681 | 16 | 649 | 4.10e-168 | 497 |
| MsG0380015637.01.T01 | MTR_7g022870 | 37.316 | 611 | 336 | 7 | 77 | 684 | 70 | 636 | 1.61e-132 | 407 |
| MsG0380015637.01.T01 | MTR_7g022870 | 37.912 | 546 | 292 | 7 | 77 | 619 | 70 | 571 | 3.21e-117 | 363 |
| MsG0380015637.01.T01 | MTR_6g024420 | 46.341 | 123 | 40 | 4 | 280 | 402 | 70 | 166 | 1.73e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015637.01.T01 | AT1G22150 | 72.279 | 689 | 153 | 5 | 1 | 688 | 1 | 652 | 0.0 | 966 |
| MsG0380015637.01.T01 | AT1G22150 | 72.279 | 689 | 153 | 5 | 1 | 688 | 1 | 652 | 0.0 | 966 |
| MsG0380015637.01.T01 | AT1G22150 | 72.279 | 689 | 153 | 5 | 1 | 688 | 1 | 652 | 0.0 | 966 |
| MsG0380015637.01.T01 | AT1G78000 | 73.485 | 660 | 139 | 3 | 30 | 688 | 25 | 649 | 0.0 | 930 |
| MsG0380015637.01.T01 | AT1G78000 | 73.485 | 660 | 139 | 3 | 30 | 688 | 25 | 649 | 0.0 | 930 |
| MsG0380015637.01.T01 | AT1G78000 | 73.485 | 660 | 139 | 3 | 30 | 688 | 25 | 649 | 0.0 | 930 |
| MsG0380015637.01.T01 | AT4G08620 | 67.988 | 656 | 174 | 3 | 34 | 688 | 24 | 644 | 0.0 | 894 |
| MsG0380015637.01.T01 | AT1G78000 | 74.272 | 618 | 123 | 3 | 30 | 646 | 25 | 607 | 0.0 | 876 |
| MsG0380015637.01.T01 | AT1G22150 | 72.903 | 620 | 130 | 5 | 1 | 619 | 1 | 583 | 0.0 | 867 |
| MsG0380015637.01.T01 | AT1G78000 | 74.450 | 591 | 115 | 3 | 30 | 619 | 25 | 580 | 0.0 | 831 |
| MsG0380015637.01.T01 | AT1G78000 | 73.373 | 507 | 100 | 2 | 29 | 535 | 24 | 495 | 0.0 | 695 |
| MsG0380015637.01.T01 | AT3G51895 | 50.382 | 655 | 287 | 4 | 33 | 685 | 65 | 683 | 0.0 | 690 |
| MsG0380015637.01.T01 | AT3G51895 | 50.382 | 655 | 287 | 4 | 33 | 685 | 20 | 638 | 0.0 | 689 |
| MsG0380015637.01.T01 | AT3G15990 | 49.091 | 660 | 299 | 3 | 33 | 691 | 27 | 650 | 0.0 | 675 |
| MsG0380015637.01.T01 | AT1G78000 | 75.417 | 480 | 82 | 3 | 141 | 619 | 1 | 445 | 0.0 | 656 |
| MsG0380015637.01.T01 | AT1G23090 | 48.097 | 657 | 303 | 4 | 33 | 687 | 4 | 624 | 0.0 | 647 |
| MsG0380015637.01.T01 | AT5G10180 | 50.830 | 663 | 283 | 7 | 27 | 684 | 48 | 672 | 0.0 | 646 |
| MsG0380015637.01.T01 | AT4G02700 | 46.483 | 654 | 312 | 4 | 33 | 684 | 10 | 627 | 0.0 | 613 |
| MsG0380015637.01.T01 | AT1G77990 | 46.154 | 689 | 323 | 7 | 6 | 681 | 10 | 663 | 0.0 | 603 |
| MsG0380015637.01.T01 | AT5G19600 | 40.597 | 670 | 346 | 7 | 19 | 684 | 2 | 623 | 1.65e-179 | 526 |
| MsG0380015637.01.T01 | AT1G23090 | 46.780 | 528 | 243 | 4 | 162 | 687 | 1 | 492 | 3.93e-169 | 494 |
| MsG0380015637.01.T01 | AT1G23090 | 46.780 | 528 | 243 | 4 | 162 | 687 | 1 | 492 | 3.93e-169 | 494 |
| MsG0380015637.01.T01 | AT1G23090 | 46.780 | 528 | 243 | 4 | 162 | 687 | 1 | 492 | 3.93e-169 | 494 |
| MsG0380015637.01.T01 | AT3G12520 | 37.152 | 611 | 337 | 7 | 77 | 684 | 47 | 613 | 1.11e-128 | 396 |
| MsG0380015637.01.T01 | AT3G12520 | 37.152 | 611 | 337 | 7 | 77 | 684 | 63 | 629 | 1.31e-128 | 396 |
| MsG0380015637.01.T01 | AT5G13550 | 35.714 | 630 | 358 | 7 | 58 | 684 | 57 | 642 | 1.40e-124 | 386 |
| MsG0380015637.01.T01 | AT3G12520 | 37.718 | 517 | 277 | 6 | 77 | 592 | 63 | 535 | 2.40e-108 | 339 |
Find 108 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCAAGAACTGCTATTT+TGG | 0.159336 | 3:+72863588 | MsG0380015637.01.T01:CDS |
| CAAACTTTACACATCAAATT+TGG | 0.194351 | 3:+72864272 | MsG0380015637.01.T01:CDS |
| TTAATGTCATACAATAAATT+TGG | 0.204828 | 3:-72862032 | None:intergenic |
| GCTTGCATGGGAGCATTCTT+TGG | 0.233187 | 3:+72863132 | MsG0380015637.01.T01:CDS |
| TCAAATTTGGCTAACATAAT+TGG | 0.235564 | 3:+72864285 | MsG0380015637.01.T01:CDS |
| TCATATTCCCTATACTTAAC+TGG | 0.244415 | 3:+72860943 | MsG0380015637.01.T01:CDS |
| CTTGCATGGGAGCATTCTTT+GGG | 0.248132 | 3:+72863133 | MsG0380015637.01.T01:CDS |
| GGCAGTGGTTTCTCTCTTGT+TGG | 0.266819 | 3:+72861347 | MsG0380015637.01.T01:CDS |
| CTTGTTTGAGCAGCTTGTTC+TGG | 0.272068 | 3:+72864224 | MsG0380015637.01.T01:intron |
| TTCCCCAAAATAGCAGTTCT+TGG | 0.283487 | 3:-72863592 | None:intergenic |
| ACCACTTATTTATGCTTTCA+TGG | 0.312166 | 3:+72861293 | MsG0380015637.01.T01:CDS |
| TCCTTGAATAAATTCTGTTT+TGG | 0.314696 | 3:-72860822 | None:intergenic |
| TATTCTTCTGCATGCGTAAC+AGG | 0.316301 | 3:-72861396 | None:intergenic |
| GCAGTGGTTTCTCTCTTGTT+GGG | 0.317370 | 3:+72861348 | MsG0380015637.01.T01:CDS |
| CCCTTTCAGGTTCTTTCTCT+CGG | 0.326604 | 3:+72862899 | MsG0380015637.01.T01:intron |
| CATCAGTCTTGTGGACTATC+AGG | 0.327508 | 3:+72863068 | MsG0380015637.01.T01:CDS |
| TTGGCCTTGTCACTTGTAAT+AGG | 0.331619 | 3:-72863573 | None:intergenic |
| CTATCCCATGCTGCTATTGT+CGG | 0.334142 | 3:+72861640 | MsG0380015637.01.T01:CDS |
| ATACTCTAAGCTTGCACATT+TGG | 0.342714 | 3:+72861143 | MsG0380015637.01.T01:CDS |
| TACTAGCTTCTGTGTATTGT+TGG | 0.347401 | 3:-72863645 | None:intergenic |
| CATGGGTTCACATCTAGCTT+TGG | 0.355433 | 3:-72864357 | None:intergenic |
| GATATCAATGGGGCAATTGC+TGG | 0.356023 | 3:-72862169 | None:intergenic |
| GTACCTTTCTTTAACATAGT+TGG | 0.358549 | 3:-72863722 | None:intergenic |
| AGAAGAACAAGAAATTCTTC+TGG | 0.361674 | 3:+72862143 | MsG0380015637.01.T01:CDS |
| ATGAAGGATTATCAATTAGA+TGG | 0.377902 | 3:+72862612 | MsG0380015637.01.T01:CDS |
| TGGTCTTTGAAAGATCTTAG+AGG | 0.380869 | 3:-72860885 | None:intergenic |
| GCACATTTGGCACCACAGTA+TGG | 0.381293 | 3:+72861156 | MsG0380015637.01.T01:CDS |
| ATTGCAACTTTGTAAGCATA+TGG | 0.407177 | 3:-72860795 | None:intergenic |
| TCCAAAACAGAATTTATTCA+AGG | 0.407770 | 3:+72860821 | MsG0380015637.01.T01:CDS |
| CAGCTTGTTCTGGCAAATCC+TGG | 0.413117 | 3:+72864234 | MsG0380015637.01.T01:intron |
| TTCTGCTGTCATCAGTCTTG+TGG | 0.413682 | 3:+72863059 | MsG0380015637.01.T01:CDS |
| TGATATTATCTCCGTGTTGA+AGG | 0.418696 | 3:+72861750 | MsG0380015637.01.T01:CDS |
| AACTGGCAAACTATATTAAT+CGG | 0.422167 | 3:+72861980 | MsG0380015637.01.T01:CDS |
| TTTAAAATTGGCGTCATGGC+AGG | 0.425028 | 3:+72862446 | MsG0380015637.01.T01:CDS |
| ACAGAAGCTAGTAAGGTTCC+AGG | 0.431458 | 3:+72863655 | MsG0380015637.01.T01:CDS |
| GAGATAGCATACTCCATGTT+TGG | 0.433528 | 3:-72861788 | None:intergenic |
| TTCTATGACTTCTTGTTATG+TGG | 0.437463 | 3:+72862677 | MsG0380015637.01.T01:CDS |
| TAAATTTCATGAACAGATGA+AGG | 0.439342 | 3:-72862395 | None:intergenic |
| ACAATACAACTGATATCAAT+GGG | 0.439415 | 3:-72862180 | None:intergenic |
| CAACAGCTAAAGGGTTTCCT+TGG | 0.439994 | 3:+72861697 | MsG0380015637.01.T01:CDS |
| GGGATTACACAAGCAACTCT+TGG | 0.440824 | 3:+72861453 | MsG0380015637.01.T01:CDS |
| AATTGCCCTTCAACAGCTAA+AGG | 0.441884 | 3:+72861687 | MsG0380015637.01.T01:CDS |
| GAAGAACAAGAAATTCTTCT+GGG | 0.444848 | 3:+72862144 | MsG0380015637.01.T01:CDS |
| AAGAACATTTGCATCTATGA+AGG | 0.450445 | 3:+72862596 | MsG0380015637.01.T01:CDS |
| GGAAACCCTTTAGCTGTTGA+AGG | 0.451418 | 3:-72861693 | None:intergenic |
| TTCTTTAACATAGTTGGAGT+TGG | 0.452253 | 3:-72863716 | None:intergenic |
| AATGATGATGGCGGCGAGAA+TGG | 0.456380 | 3:-72863037 | None:intergenic |
| TTTGGCTAACATAATTGGTC+AGG | 0.456815 | 3:+72864290 | MsG0380015637.01.T01:CDS |
| ATTGCCCTTCAACAGCTAAA+GGG | 0.458365 | 3:+72861688 | MsG0380015637.01.T01:CDS |
| CAGTGGTTTCTCTCTTGTTG+GGG | 0.462873 | 3:+72861349 | MsG0380015637.01.T01:CDS |
| AAGGTAAATCACATAGAGAA+AGG | 0.464306 | 3:+72862365 | MsG0380015637.01.T01:intron |
| ATGGCGGCGAGAATGGCATT+TGG | 0.465915 | 3:-72863030 | None:intergenic |
| ACAATACACAGAAGCTAGTA+AGG | 0.466966 | 3:+72863648 | MsG0380015637.01.T01:CDS |
| ACTTCTTGTTATGTGGCAAC+TGG | 0.469483 | 3:+72862684 | MsG0380015637.01.T01:CDS |
| TGCAAGCCTTTGCATACCTC+AGG | 0.469967 | 3:+72861022 | MsG0380015637.01.T01:CDS |
| AGTTCTCGCGATATAGCAAT+AGG | 0.473447 | 3:+72861318 | MsG0380015637.01.T01:CDS |
| CGACAATAGCAGCATGGGAT+AGG | 0.479296 | 3:-72861639 | None:intergenic |
| CAATATTAGAGACTGCAGTT+TGG | 0.479467 | 3:-72862948 | None:intergenic |
| GGATTACACAAGCAACTCTT+GGG | 0.490943 | 3:+72861454 | MsG0380015637.01.T01:CDS |
| ATTAGATGGAAACAGAGAAA+TGG | 0.491879 | 3:+72862626 | MsG0380015637.01.T01:CDS |
| CATATTCCCTATACTTAACT+GGG | 0.493178 | 3:+72860944 | MsG0380015637.01.T01:CDS |
| TTGTCTGTATCTTTATCAGT+TGG | 0.493507 | 3:-72860726 | None:intergenic |
| TTATCAGTTGGAGAATCCAT+TGG | 0.494298 | 3:-72860714 | None:intergenic |
| GACAATACAACTGATATCAA+TGG | 0.494922 | 3:-72862181 | None:intergenic |
| TTGTCTGTCACTGCTGAACC+AGG | 0.503392 | 3:-72864252 | None:intergenic |
| CCACTTATTTATGCTTTCAT+GGG | 0.515118 | 3:+72861294 | MsG0380015637.01.T01:CDS |
| AAATGTTCTTCCAATAGCTA+TGG | 0.529144 | 3:-72862583 | None:intergenic |
| CAGAATATTAAGATGGCTAA+CGG | 0.529634 | 3:+72863825 | MsG0380015637.01.T01:intron |
| ACTCCAACTATGTTAAAGAA+AGG | 0.531555 | 3:+72863719 | MsG0380015637.01.T01:CDS |
| GGCAGGCATGATTGCACTGA+CGG | 0.532067 | 3:+72862463 | MsG0380015637.01.T01:CDS |
| AACAGAGAAATGGTAGCGTT+AGG | 0.534101 | 3:+72862636 | MsG0380015637.01.T01:CDS |
| TATGTAACTCTTCAAAGGCA+TGG | 0.541754 | 3:-72864034 | None:intergenic |
| AAGAGAGAAACCACTGCCAC+TGG | 0.543890 | 3:-72861342 | None:intergenic |
| AGCAATAGGACCAGTGGCAG+TGG | 0.545673 | 3:+72861332 | MsG0380015637.01.T01:CDS |
| TTTAGGGGAGATATAATAGC+TGG | 0.546068 | 3:+72860990 | MsG0380015637.01.T01:CDS |
| TTCAGGTTCTTTCTCTCGGT+CGG | 0.546094 | 3:+72862903 | MsG0380015637.01.T01:intron |
| CCCATGAAAGCATAAATAAG+TGG | 0.547324 | 3:-72861294 | None:intergenic |
| AGGTTCTTTCTCTCGGTCGG+CGG | 0.551736 | 3:+72862906 | MsG0380015637.01.T01:intron |
| TCGGCGGTAAATTACATGGC+TGG | 0.554084 | 3:+72862922 | MsG0380015637.01.T01:CDS |
| AGGTAAATCACATAGAGAAA+GGG | 0.560126 | 3:+72862366 | MsG0380015637.01.T01:intron |
| GTCACTGTTGATGTCTCCAA+TGG | 0.566938 | 3:+72860698 | None:intergenic |
| AGCGGCGATTACCTTGGGAA+AGG | 0.569473 | 3:+72862422 | MsG0380015637.01.T01:CDS |
| TTAGGAACAATGAATGTCGT+TGG | 0.571428 | 3:+72862654 | MsG0380015637.01.T01:CDS |
| GAAACCCTTTAGCTGTTGAA+GGG | 0.577893 | 3:-72861692 | None:intergenic |
| ACTTCTATGTAACTCTTCAA+AGG | 0.581904 | 3:-72864039 | None:intergenic |
| CAATAAATTTGGCGACCAGA+AGG | 0.585111 | 3:-72862021 | None:intergenic |
| AAAACCGACAATAGCAGCAT+GGG | 0.585952 | 3:-72861644 | None:intergenic |
| GTATTCTCATCAGCCAAACA+TGG | 0.590091 | 3:+72861775 | MsG0380015637.01.T01:CDS |
| ATGAAAGCATAAATAAGTGG+TGG | 0.604379 | 3:-72861291 | None:intergenic |
| ACTCTTACAATCATTACACC+TGG | 0.609301 | 3:-72863673 | None:intergenic |
| TCGGTCGGCGGTAAATTACA+TGG | 0.613139 | 3:+72862918 | MsG0380015637.01.T01:CDS |
| ACGGATGAAGAAGCAGTGAA+AGG | 0.618073 | 3:+72863844 | MsG0380015637.01.T01:CDS |
| GATGACAGCAGAAATGATGA+TGG | 0.627258 | 3:-72863049 | None:intergenic |
| AAATTACCTGAGGTATGCAA+AGG | 0.629443 | 3:-72861028 | None:intergenic |
| TTTCTATAGACAGATGTCCC+AGG | 0.630261 | 3:-72863619 | None:intergenic |
| TAAAACCGACAATAGCAGCA+TGG | 0.633354 | 3:-72861645 | None:intergenic |
| TTGCATGGGAGCATTCTTTG+GGG | 0.638724 | 3:+72863134 | MsG0380015637.01.T01:CDS |
| CGATATAGCAATAGGACCAG+TGG | 0.642615 | 3:+72861326 | MsG0380015637.01.T01:CDS |
| TATTCCCTATACTTAACTGG+GGG | 0.663981 | 3:+72860946 | MsG0380015637.01.T01:CDS |
| ATAACACGCGCAGATAAACA+AGG | 0.670320 | 3:+72862220 | MsG0380015637.01.T01:CDS |
| ATATTCCCTATACTTAACTG+GGG | 0.678687 | 3:+72860945 | MsG0380015637.01.T01:CDS |
| TGAGAATACTGCCTTCAACA+CGG | 0.684095 | 3:-72861761 | None:intergenic |
| AGATCCTATTACAAGTGACA+AGG | 0.684935 | 3:+72863569 | MsG0380015637.01.T01:CDS |
| CAACAGCTGCTGCAACAGTG+AGG | 0.697666 | 3:-72864323 | None:intergenic |
| GTCTTACATAGTCCATACTG+TGG | 0.710058 | 3:-72861168 | None:intergenic |
| GACAGCAGAAATGATGATGG+CGG | 0.713860 | 3:-72863046 | None:intergenic |
| CAATACAACTGATATCAATG+GGG | 0.724749 | 3:-72862179 | None:intergenic |
| GTTACTGACATCGATACGAG+TGG | 0.726960 | 3:+72864008 | MsG0380015637.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATCTTAAAAAATTTA+GGG | + | Chr3:72860974-72860993 | MsG0380015637.01.T01:CDS | 10.0% |
| !!! | TTATTATATCTGAAATATTT+AGG | + | Chr3:72862073-72862092 | MsG0380015637.01.T01:intron | 10.0% |
| !! | AACACTTATAAAAAAAATCT+TGG | - | Chr3:72861208-72861227 | None:intergenic | 15.0% |
| !! | ATATAATAATAAGATGAAGT+AGG | - | Chr3:72862062-72862081 | None:intergenic | 15.0% |
| !! | GATATAAATTATGATACTAT+AGG | + | Chr3:72864159-72864178 | MsG0380015637.01.T01:intron | 15.0% |
| !! | GTTACAATCTTAAAAAATTT+AGG | + | Chr3:72860973-72860992 | MsG0380015637.01.T01:CDS | 15.0% |
| !! | TACAATCTTAAAAAATTTAG+GGG | + | Chr3:72860975-72860994 | MsG0380015637.01.T01:CDS | 15.0% |
| !! | TATAATAATAAGATGAAGTA+GGG | - | Chr3:72862061-72862080 | None:intergenic | 15.0% |
| !! | TTAATGTCATACAATAAATT+TGG | - | Chr3:72862035-72862054 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTATAAGTGTTT+TGG | + | Chr3:72861209-72861228 | MsG0380015637.01.T01:intron | 15.0% |
| !! | ATATTTGATGTTCTTATACT+TGG | + | Chr3:72861100-72861119 | MsG0380015637.01.T01:intron | 20.0% |
| !! | TGTTATGAATACAAAAAAAG+TGG | - | Chr3:72862206-72862225 | None:intergenic | 20.0% |
| !! | TTGTTTCAATGTATAAACAA+AGG | - | Chr3:72863761-72863780 | None:intergenic | 20.0% |
| !!! | ACATTTTAGTTTTAATTCCA+AGG | - | Chr3:72861717-72861736 | None:intergenic | 20.0% |
| !!! | CTAATTAAACTATTGCATTT+TGG | + | Chr3:72862549-72862568 | MsG0380015637.01.T01:intron | 20.0% |
| !!! | GTTCATGAAATTTATTTTAG+CGG | + | Chr3:72862404-72862423 | MsG0380015637.01.T01:CDS | 20.0% |
| !!! | TAATATTTAACATTTTGCAG+TGG | + | Chr3:72861957-72861976 | MsG0380015637.01.T01:CDS | 20.0% |
| !!! | TGGTAGGAAATTTTAATATT+AGG | - | Chr3:72861900-72861919 | None:intergenic | 20.0% |
| !!! | TTATACTTGGTTTGAAAAAT+AGG | + | Chr3:72861113-72861132 | MsG0380015637.01.T01:intron | 20.0% |
| !!! | TTCATACATCTACAATTTTA+TGG | + | Chr3:72862794-72862813 | MsG0380015637.01.T01:intron | 20.0% |
| !!! | TTTTTTGCAGAATATTAAGA+TGG | + | Chr3:72863818-72863837 | MsG0380015637.01.T01:intron | 20.0% |
| ! | AACTGGCAAACTATATTAAT+CGG | + | Chr3:72861980-72861999 | MsG0380015637.01.T01:CDS | 25.0% |
| ! | ACAATACAACTGATATCAAT+GGG | - | Chr3:72862183-72862202 | None:intergenic | 25.0% |
| ! | AGCATAGTATAACTAAGATT+TGG | - | Chr3:72863205-72863224 | None:intergenic | 25.0% |
| ! | AGTATTAATCAGAATGTGAA+TGG | - | Chr3:72862275-72862294 | None:intergenic | 25.0% |
| ! | ATAATAAAGTACATAGACTC+CGG | - | Chr3:72863380-72863399 | None:intergenic | 25.0% |
| ! | ATATCACAGCAATTTAAACA+AGG | + | Chr3:72863429-72863448 | MsG0380015637.01.T01:intron | 25.0% |
| ! | ATGAAGGATTATCAATTAGA+TGG | + | Chr3:72862612-72862631 | MsG0380015637.01.T01:CDS | 25.0% |
| ! | CAAACTTTACACATCAAATT+TGG | + | Chr3:72864272-72864291 | MsG0380015637.01.T01:CDS | 25.0% |
| ! | CAACCTTAAATTTAAAGACT+AGG | + | Chr3:72863282-72863301 | MsG0380015637.01.T01:intron | 25.0% |
| ! | TAAATTTCATGAACAGATGA+AGG | - | Chr3:72862398-72862417 | None:intergenic | 25.0% |
| ! | TAGAAAACTGTTGAAGTAAA+TGG | - | Chr3:72862532-72862551 | None:intergenic | 25.0% |
| ! | TATGAGGCTAAAACAAATTA+AGG | - | Chr3:72863936-72863955 | None:intergenic | 25.0% |
| ! | TCAAAAATTGAATTCTTGTG+TGG | - | Chr3:72863876-72863895 | None:intergenic | 25.0% |
| ! | TCAAATTTGGCTAACATAAT+TGG | + | Chr3:72864285-72864304 | MsG0380015637.01.T01:CDS | 25.0% |
| ! | TCCAAAACAGAATTTATTCA+AGG | + | Chr3:72860821-72860840 | MsG0380015637.01.T01:CDS | 25.0% |
| ! | TCTCAAGAAAAAGTTCAAAT+TGG | - | Chr3:72863785-72863804 | None:intergenic | 25.0% |
| ! | TGATGATCTTATAACTGAAT+CGG | + | Chr3:72861568-72861587 | MsG0380015637.01.T01:intron | 25.0% |
| ! | TGGTTTGAAAAATAGGATAT+TGG | + | Chr3:72861120-72861139 | MsG0380015637.01.T01:intron | 25.0% |
| ! | TGTCAAAGTAATTCCTAATA+GGG | + | Chr3:72863231-72863250 | MsG0380015637.01.T01:intron | 25.0% |
| ! | TTGTCAAAGTAATTCCTAAT+AGG | + | Chr3:72863230-72863249 | MsG0380015637.01.T01:intron | 25.0% |
| ! | TTTCAATGTATAAACAAAGG+AGG | - | Chr3:72863758-72863777 | None:intergenic | 25.0% |
| !! | AGTCCTAGTCTTTAAATTTA+AGG | - | Chr3:72863288-72863307 | None:intergenic | 25.0% |
| !! | AGTCTAAAACAAATTACTCA+AGG | - | Chr3:72863961-72863980 | None:intergenic | 25.0% |
| !! | ATGTTTCTTTTACAGTGTAT+TGG | - | Chr3:72860851-72860870 | None:intergenic | 25.0% |
| !! | CTAGTCTTTAAATTTAAGGT+TGG | - | Chr3:72863284-72863303 | None:intergenic | 25.0% |
| !! | TCCTTGAATAAATTCTGTTT+TGG | - | Chr3:72860825-72860844 | None:intergenic | 25.0% |
| !! | TTTGGAGTGTATTTAAAAAG+AGG | - | Chr3:72863015-72863034 | None:intergenic | 25.0% |
| !!! | ACATCAAAAAAGTTGATACT+TGG | + | Chr3:72860912-72860931 | MsG0380015637.01.T01:CDS | 25.0% |
| !!! | ACTATTGCATTTTGGTTTTT+AGG | + | Chr3:72862557-72862576 | MsG0380015637.01.T01:intron | 25.0% |
| !!! | AGGAAATTTTAATATTAGGC+AGG | - | Chr3:72861896-72861915 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTGTGTTGATTA+GGG | + | Chr3:72862118-72862137 | MsG0380015637.01.T01:intron | 25.0% |
| !!! | CAGACAACAGTTTTTAATTT+CGG | + | Chr3:72862746-72862765 | MsG0380015637.01.T01:intron | 25.0% |
| !!! | GGAAATTTTAATATTAGGCA+GGG | - | Chr3:72861895-72861914 | None:intergenic | 25.0% |
| !!! | TATTTCATGTTGTGTTGATT+AGG | + | Chr3:72862117-72862136 | MsG0380015637.01.T01:intron | 25.0% |
| !!! | TCAACTTTTTTGATGTACTT+TGG | - | Chr3:72860908-72860927 | None:intergenic | 25.0% |
| !!! | TTGAATAAATTCTGTTTTGG+AGG | - | Chr3:72860822-72860841 | None:intergenic | 25.0% |
| AAATGTTCTTCCAATAGCTA+TGG | - | Chr3:72862586-72862605 | None:intergenic | 30.0% | |
| AAGAACATTTGCATCTATGA+AGG | + | Chr3:72862596-72862615 | MsG0380015637.01.T01:CDS | 30.0% | |
| AAGGTAAATCACATAGAGAA+AGG | + | Chr3:72862365-72862384 | MsG0380015637.01.T01:intron | 30.0% | |
| ACAAAGCTTGAATCTGTAAA+AGG | - | Chr3:72861270-72861289 | None:intergenic | 30.0% | |
| ACCACTTATTTATGCTTTCA+TGG | + | Chr3:72861293-72861312 | MsG0380015637.01.T01:CDS | 30.0% | |
| ACTCCAACTATGTTAAAGAA+AGG | + | Chr3:72863719-72863738 | MsG0380015637.01.T01:CDS | 30.0% | |
| ACTTCTATGTAACTCTTCAA+AGG | - | Chr3:72864042-72864061 | None:intergenic | 30.0% | |
| AGAAGAACAAGAAATTCTTC+TGG | + | Chr3:72862143-72862162 | MsG0380015637.01.T01:CDS | 30.0% | |
| AGATACAGACAAAAACAAGA+TGG | + | Chr3:72860737-72860756 | MsG0380015637.01.T01:CDS | 30.0% | |
| AGGTAAATCACATAGAGAAA+GGG | + | Chr3:72862366-72862385 | MsG0380015637.01.T01:intron | 30.0% | |
| ATATTCCCTATACTTAACTG+GGG | + | Chr3:72860945-72860964 | MsG0380015637.01.T01:CDS | 30.0% | |
| ATTAGATGGAAACAGAGAAA+TGG | + | Chr3:72862626-72862645 | MsG0380015637.01.T01:CDS | 30.0% | |
| ATTGCAACTTTGTAAGCATA+TGG | - | Chr3:72860798-72860817 | None:intergenic | 30.0% | |
| ATTGTGATTATATGTTGCAG+CGG | + | Chr3:72863986-72864005 | MsG0380015637.01.T01:intron | 30.0% | |
| CAAAATTAATCATGTCTGCT+AGG | + | Chr3:72864087-72864106 | MsG0380015637.01.T01:intron | 30.0% | |
| CAAAGCTTGAATCTGTAAAA+GGG | - | Chr3:72861269-72861288 | None:intergenic | 30.0% | |
| CAAATTACTCAAGGAATATG+AGG | - | Chr3:72863952-72863971 | None:intergenic | 30.0% | |
| CAATACAACTGATATCAATG+GGG | - | Chr3:72862182-72862201 | None:intergenic | 30.0% | |
| CAGAATATTAAGATGGCTAA+CGG | + | Chr3:72863825-72863844 | MsG0380015637.01.T01:intron | 30.0% | |
| CATATGTATATGTAGAAGCT+TGG | + | Chr3:72864118-72864137 | MsG0380015637.01.T01:intron | 30.0% | |
| CATATTCCCTATACTTAACT+GGG | + | Chr3:72860944-72860963 | MsG0380015637.01.T01:CDS | 30.0% | |
| CCACTTATTTATGCTTTCAT+GGG | + | Chr3:72861294-72861313 | MsG0380015637.01.T01:CDS | 30.0% | |
| GAAGAACAAGAAATTCTTCT+GGG | + | Chr3:72862144-72862163 | MsG0380015637.01.T01:CDS | 30.0% | |
| GACAATACAACTGATATCAA+TGG | - | Chr3:72862184-72862203 | None:intergenic | 30.0% | |
| GATTTACCTTCACATATCAA+TGG | - | Chr3:72862355-72862374 | None:intergenic | 30.0% | |
| GTACCTTTCTTTAACATAGT+TGG | - | Chr3:72863725-72863744 | None:intergenic | 30.0% | |
| GTCAAAGTAATTCCTAATAG+GGG | + | Chr3:72863232-72863251 | MsG0380015637.01.T01:intron | 30.0% | |
| TCAAACAAGTAACACATTCT+TGG | - | Chr3:72864213-72864232 | None:intergenic | 30.0% | |
| TCATAAGTCAAAATTACCTG+AGG | - | Chr3:72861041-72861060 | None:intergenic | 30.0% | |
| TCATATTCCCTATACTTAAC+TGG | + | Chr3:72860943-72860962 | MsG0380015637.01.T01:CDS | 30.0% | |
| TGAAACCTGTCACAAAAATA+AGG | - | Chr3:72863536-72863555 | None:intergenic | 30.0% | |
| TTCTGTCAAAAAACCAGATT+AGG | + | Chr3:72861601-72861620 | MsG0380015637.01.T01:intron | 30.0% | |
| TTCTTTAACATAGTTGGAGT+TGG | - | Chr3:72863719-72863738 | None:intergenic | 30.0% | |
| TTGTCTGTATCTTTATCAGT+TGG | - | Chr3:72860729-72860748 | None:intergenic | 30.0% | |
| TTTAAAGACTAGGACTAAGT+AGG | + | Chr3:72863292-72863311 | MsG0380015637.01.T01:intron | 30.0% | |
| ! | ATGAAAGCATAAATAAGTGG+TGG | - | Chr3:72861294-72861313 | None:intergenic | 30.0% |
| ! | TTCTATGACTTCTTGTTATG+TGG | + | Chr3:72862677-72862696 | MsG0380015637.01.T01:CDS | 30.0% |
| ! | TTTTGACCATTGATATGTGA+AGG | + | Chr3:72862346-72862365 | MsG0380015637.01.T01:intron | 30.0% |
| !! | GGTCAAAAACTTTAGTTCTA+TGG | - | Chr3:72862334-72862353 | None:intergenic | 30.0% |
| !! | TCTTGAAAAAAGAAGTGTTC+AGG | + | Chr3:72864061-72864080 | MsG0380015637.01.T01:CDS | 30.0% |
| !!! | CAATTTTAAAACCTTTCCCA+AGG | - | Chr3:72862436-72862455 | None:intergenic | 30.0% |
| !!! | CTTGGGAAAGGTTTTAAAAT+TGG | + | Chr3:72862434-72862453 | MsG0380015637.01.T01:CDS | 30.0% |
| AAATTACCTGAGGTATGCAA+AGG | - | Chr3:72861031-72861050 | None:intergenic | 35.0% | |
| ACAATACACAGAAGCTAGTA+AGG | + | Chr3:72863648-72863667 | MsG0380015637.01.T01:CDS | 35.0% | |
| ACTCTTACAATCATTACACC+TGG | - | Chr3:72863676-72863695 | None:intergenic | 35.0% | |
| AGATCCTATTACAAGTGACA+AGG | + | Chr3:72863569-72863588 | MsG0380015637.01.T01:CDS | 35.0% | |
| ATACTCTAAGCTTGCACATT+TGG | + | Chr3:72861143-72861162 | MsG0380015637.01.T01:CDS | 35.0% | |
| CAATATTAGAGACTGCAGTT+TGG | - | Chr3:72862951-72862970 | None:intergenic | 35.0% | |
| GGAGAAATACTCATAAAGAG+AGG | - | Chr3:72862511-72862530 | None:intergenic | 35.0% | |
| GTCAATCAAGAATCCTAATC+TGG | - | Chr3:72861617-72861636 | None:intergenic | 35.0% | |
| TATGTAACTCTTCAAAGGCA+TGG | - | Chr3:72864037-72864056 | None:intergenic | 35.0% | |
| TATTCCCTATACTTAACTGG+GGG | + | Chr3:72860946-72860965 | MsG0380015637.01.T01:CDS | 35.0% | |
| TGATATTATCTCCGTGTTGA+AGG | + | Chr3:72861750-72861769 | MsG0380015637.01.T01:CDS | 35.0% | |
| TGTAATCCCAGCAAAAAAAG+TGG | - | Chr3:72861442-72861461 | None:intergenic | 35.0% | |
| TTAGGAACAATGAATGTCGT+TGG | + | Chr3:72862654-72862673 | MsG0380015637.01.T01:CDS | 35.0% | |
| TTATCAGTTGGAGAATCCAT+TGG | - | Chr3:72860717-72860736 | None:intergenic | 35.0% | |
| TTTAGGGGAGATATAATAGC+TGG | + | Chr3:72860990-72861009 | MsG0380015637.01.T01:CDS | 35.0% | |
| TTTGGCTAACATAATTGGTC+AGG | + | Chr3:72864290-72864309 | MsG0380015637.01.T01:CDS | 35.0% | |
| ! | CCCATGAAAGCATAAATAAG+TGG | - | Chr3:72861297-72861316 | None:intergenic | 35.0% |
| ! | TACTAGCTTCTGTGTATTGT+TGG | - | Chr3:72863648-72863667 | None:intergenic | 35.0% |
| ! | TGGTCTTTGAAAGATCTTAG+AGG | - | Chr3:72860888-72860907 | None:intergenic | 35.0% |
| ! | TTAACATTTTGCAGTGGAAC+TGG | + | Chr3:72861963-72861982 | MsG0380015637.01.T01:CDS | 35.0% |
| !! | ATCAGGCAGCAATTTTGATA+TGG | + | Chr3:72863085-72863104 | MsG0380015637.01.T01:CDS | 35.0% |
| !! | ATTCGATTTTGTTGCTTGCA+TGG | + | Chr3:72863119-72863138 | MsG0380015637.01.T01:CDS | 35.0% |
| !! | TTCGATTTTGTTGCTTGCAT+GGG | + | Chr3:72863120-72863139 | MsG0380015637.01.T01:CDS | 35.0% |
| !! | TTTTAGGAAGCCATAGCTAT+TGG | + | Chr3:72862573-72862592 | MsG0380015637.01.T01:intron | 35.0% |
| !!! | AAGCTTTTTGAGTTTCCTTC+TGG | + | Chr3:72862006-72862025 | MsG0380015637.01.T01:CDS | 35.0% |
| !!! | AGGTTTTAAAATTGGCGTCA+TGG | + | Chr3:72862442-72862461 | MsG0380015637.01.T01:CDS | 35.0% |
| !!! | GATCGATTTTTTTCCCTTTC+AGG | + | Chr3:72862886-72862905 | MsG0380015637.01.T01:intron | 35.0% |
| !!! | TGAGACCTTATTTTTGTGAC+AGG | + | Chr3:72863528-72863547 | MsG0380015637.01.T01:intron | 35.0% |
| !!! | TTACTGCCACTTTTTTTGCT+GGG | + | Chr3:72861433-72861452 | MsG0380015637.01.T01:CDS | 35.0% |
| !!! | TTTACTGCCACTTTTTTTGC+TGG | + | Chr3:72861432-72861451 | MsG0380015637.01.T01:CDS | 35.0% |
| AAAACCGACAATAGCAGCAT+GGG | - | Chr3:72861647-72861666 | None:intergenic | 40.0% | |
| AATTGCCCTTCAACAGCTAA+AGG | + | Chr3:72861687-72861706 | MsG0380015637.01.T01:CDS | 40.0% | |
| AGATTCTCGCATAGCATAAC+CGG | + | Chr3:72863358-72863377 | MsG0380015637.01.T01:intron | 40.0% | |
| AGTGTAACATTAGTAGCAGC+TGG | - | Chr3:72861535-72861554 | None:intergenic | 40.0% | |
| AGTTCTCGCGATATAGCAAT+AGG | + | Chr3:72861318-72861337 | MsG0380015637.01.T01:CDS | 40.0% | |
| ATAACACGCGCAGATAAACA+AGG | + | Chr3:72862220-72862239 | MsG0380015637.01.T01:CDS | 40.0% | |
| ATTGCCCTTCAACAGCTAAA+GGG | + | Chr3:72861688-72861707 | MsG0380015637.01.T01:CDS | 40.0% | |
| CAATAAATTTGGCGACCAGA+AGG | - | Chr3:72862024-72862043 | None:intergenic | 40.0% | |
| GAAACCCTTTAGCTGTTGAA+GGG | - | Chr3:72861695-72861714 | None:intergenic | 40.0% | |
| GAGATAGCATACTCCATGTT+TGG | - | Chr3:72861791-72861810 | None:intergenic | 40.0% | |
| GATGACAGCAGAAATGATGA+TGG | - | Chr3:72863052-72863071 | None:intergenic | 40.0% | |
| GCTGGTAGTACATGTATATC+CGG | - | Chr3:72861517-72861536 | None:intergenic | 40.0% | |
| GGATTACACAAGCAACTCTT+GGG | + | Chr3:72861454-72861473 | MsG0380015637.01.T01:CDS | 40.0% | |
| GTATTCTCATCAGCCAAACA+TGG | + | Chr3:72861775-72861794 | MsG0380015637.01.T01:CDS | 40.0% | |
| GTCTTACATAGTCCATACTG+TGG | - | Chr3:72861171-72861190 | None:intergenic | 40.0% | |
| GTCTTATGTACACCCCTATT+AGG | - | Chr3:72863247-72863266 | None:intergenic | 40.0% | |
| TAAAACCGACAATAGCAGCA+TGG | - | Chr3:72861648-72861667 | None:intergenic | 40.0% | |
| TATTCTTCTGCATGCGTAAC+AGG | - | Chr3:72861399-72861418 | None:intergenic | 40.0% | |
| TGAGAATACTGCCTTCAACA+CGG | - | Chr3:72861764-72861783 | None:intergenic | 40.0% | |
| TTCCCCAAAATAGCAGTTCT+TGG | - | Chr3:72863595-72863614 | None:intergenic | 40.0% | |
| TTCTCCCCCAGTTAAGTATA+GGG | - | Chr3:72860953-72860972 | None:intergenic | 40.0% | |
| TTGCAAACATACACACTGGT+AGG | - | Chr3:72861916-72861935 | None:intergenic | 40.0% | |
| TTTCTATAGACAGATGTCCC+AGG | - | Chr3:72863622-72863641 | None:intergenic | 40.0% | |
| ! | AACAGAGAAATGGTAGCGTT+AGG | + | Chr3:72862636-72862655 | MsG0380015637.01.T01:CDS | 40.0% |
| ! | AAGCAACTCTTGGGATTTTC+AGG | + | Chr3:72861463-72861482 | MsG0380015637.01.T01:CDS | 40.0% |
| ! | ACTTCTTGTTATGTGGCAAC+TGG | + | Chr3:72862684-72862703 | MsG0380015637.01.T01:CDS | 40.0% |
| ! | GTTTTCGTCTCTGTTGAGAT+AGG | + | Chr3:72863159-72863178 | MsG0380015637.01.T01:CDS | 40.0% |
| ! | TTTAAAATTGGCGTCATGGC+AGG | + | Chr3:72862446-72862465 | MsG0380015637.01.T01:CDS | 40.0% |
| !! | AAGGCCAAGAACTGCTATTT+TGG | + | Chr3:72863588-72863607 | MsG0380015637.01.T01:CDS | 40.0% |
| !! | ATTTTAGCGGCGATTACCTT+GGG | + | Chr3:72862417-72862436 | MsG0380015637.01.T01:CDS | 40.0% |
| !! | CTATTTTGGGGAAGATTCCT+GGG | + | Chr3:72863602-72863621 | MsG0380015637.01.T01:CDS | 40.0% |
| !! | TTGGCCTTGTCACTTGTAAT+AGG | - | Chr3:72863576-72863595 | None:intergenic | 40.0% |
| !!! | AGGCCAAGAACTGCTATTTT+GGG | + | Chr3:72863589-72863608 | MsG0380015637.01.T01:CDS | 40.0% |
| !!! | CTGCTATTGTCGGTTTTATG+GGG | + | Chr3:72861650-72861669 | MsG0380015637.01.T01:CDS | 40.0% |
| !!! | GCTGCTATTGTCGGTTTTAT+GGG | + | Chr3:72861649-72861668 | MsG0380015637.01.T01:CDS | 40.0% |
| !!! | TATTTTAGCGGCGATTACCT+TGG | + | Chr3:72862416-72862435 | MsG0380015637.01.T01:CDS | 40.0% |
| !!! | TGCTATTGTCGGTTTTATGG+GGG | + | Chr3:72861651-72861670 | MsG0380015637.01.T01:CDS | 40.0% |
| !!! | TGCTGCTATTGTCGGTTTTA+TGG | + | Chr3:72861648-72861667 | MsG0380015637.01.T01:CDS | 40.0% |
| ACAGAAGCTAGTAAGGTTCC+AGG | + | Chr3:72863655-72863674 | MsG0380015637.01.T01:CDS | 45.0% | |
| ACCGAGAGAAAGAACCTGAA+AGG | - | Chr3:72862903-72862922 | None:intergenic | 45.0% | |
| ACGGATGAAGAAGCAGTGAA+AGG | + | Chr3:72863844-72863863 | MsG0380015637.01.T01:CDS | 45.0% | |
| CAACAGCTAAAGGGTTTCCT+TGG | + | Chr3:72861697-72861716 | MsG0380015637.01.T01:CDS | 45.0% | |
| CAGTGGTTTCTCTCTTGTTG+GGG | + | Chr3:72861349-72861368 | MsG0380015637.01.T01:CDS | 45.0% | |
| CCGAGAGAAAGAACCTGAAA+GGG | - | Chr3:72862902-72862921 | None:intergenic | 45.0% | |
| CGATATAGCAATAGGACCAG+TGG | + | Chr3:72861326-72861345 | MsG0380015637.01.T01:CDS | 45.0% | |
| CTATCCCATGCTGCTATTGT+CGG | + | Chr3:72861640-72861659 | MsG0380015637.01.T01:CDS | 45.0% | |
| CTTCTCCCCCAGTTAAGTAT+AGG | - | Chr3:72860954-72860973 | None:intergenic | 45.0% | |
| GATATCAATGGGGCAATTGC+TGG | - | Chr3:72862172-72862191 | None:intergenic | 45.0% | |
| GCACTTGCAAACATACACAC+TGG | - | Chr3:72861920-72861939 | None:intergenic | 45.0% | |
| GCAGTGGTTTCTCTCTTGTT+GGG | + | Chr3:72861348-72861367 | MsG0380015637.01.T01:CDS | 45.0% | |
| GGAAACCCTTTAGCTGTTGA+AGG | - | Chr3:72861696-72861715 | None:intergenic | 45.0% | |
| GGGATTACACAAGCAACTCT+TGG | + | Chr3:72861453-72861472 | MsG0380015637.01.T01:CDS | 45.0% | |
| GTTACTGACATCGATACGAG+TGG | + | Chr3:72864008-72864027 | MsG0380015637.01.T01:CDS | 45.0% | |
| TTCTGCTGTCATCAGTCTTG+TGG | + | Chr3:72863059-72863078 | MsG0380015637.01.T01:CDS | 45.0% | |
| ! | CATCAGTCTTGTGGACTATC+AGG | + | Chr3:72863068-72863087 | MsG0380015637.01.T01:CDS | 45.0% |
| ! | CATGGGTTCACATCTAGCTT+TGG | - | Chr3:72864360-72864379 | None:intergenic | 45.0% |
| ! | CTTGTTTGAGCAGCTTGTTC+TGG | + | Chr3:72864224-72864243 | MsG0380015637.01.T01:intron | 45.0% |
| ! | TTCAGGTTCTTTCTCTCGGT+CGG | + | Chr3:72862903-72862922 | MsG0380015637.01.T01:intron | 45.0% |
| !! | CCCTTTCAGGTTCTTTCTCT+CGG | + | Chr3:72862899-72862918 | MsG0380015637.01.T01:intron | 45.0% |
| !! | CTTGCATGGGAGCATTCTTT+GGG | + | Chr3:72863133-72863152 | MsG0380015637.01.T01:CDS | 45.0% |
| !! | GACAGCAGAAATGATGATGG+CGG | - | Chr3:72863049-72863068 | None:intergenic | 45.0% |
| !! | GCTATTTTGGGGAAGATTCC+TGG | + | Chr3:72863601-72863620 | MsG0380015637.01.T01:CDS | 45.0% |
| !! | TTGCATGGGAGCATTCTTTG+GGG | + | Chr3:72863134-72863153 | MsG0380015637.01.T01:CDS | 45.0% |
| !!! | GCTATTGTCGGTTTTATGGG+GGG | + | Chr3:72861652-72861671 | MsG0380015637.01.T01:CDS | 45.0% |
| !!! | GGCCAAGAACTGCTATTTTG+GGG | + | Chr3:72863590-72863609 | MsG0380015637.01.T01:CDS | 45.0% |
| AAGAGAGAAACCACTGCCAC+TGG | - | Chr3:72861345-72861364 | None:intergenic | 50.0% | |
| CGACAATAGCAGCATGGGAT+AGG | - | Chr3:72861642-72861661 | None:intergenic | 50.0% | |
| GCACATTTGGCACCACAGTA+TGG | + | Chr3:72861156-72861175 | MsG0380015637.01.T01:CDS | 50.0% | |
| GGCAGTGGTTTCTCTCTTGT+TGG | + | Chr3:72861347-72861366 | MsG0380015637.01.T01:CDS | 50.0% | |
| TCGGCGGTAAATTACATGGC+TGG | + | Chr3:72862922-72862941 | MsG0380015637.01.T01:CDS | 50.0% | |
| TCGGTCGGCGGTAAATTACA+TGG | + | Chr3:72862918-72862937 | MsG0380015637.01.T01:CDS | 50.0% | |
| TGCAAGCCTTTGCATACCTC+AGG | + | Chr3:72861022-72861041 | MsG0380015637.01.T01:CDS | 50.0% | |
| TTGTCTGTCACTGCTGAACC+AGG | - | Chr3:72864255-72864274 | None:intergenic | 50.0% | |
| ! | CAGCTTGTTCTGGCAAATCC+TGG | + | Chr3:72864234-72864253 | MsG0380015637.01.T01:intron | 50.0% |
| ! | CGAAGCACTAACACAGACAC+CGG | + | Chr3:72861495-72861514 | MsG0380015637.01.T01:intron | 50.0% |
| !! | AATGATGATGGCGGCGAGAA+TGG | - | Chr3:72863040-72863059 | None:intergenic | 50.0% |
| !! | GCTTGCATGGGAGCATTCTT+TGG | + | Chr3:72863132-72863151 | MsG0380015637.01.T01:CDS | 50.0% |
| AGCAATAGGACCAGTGGCAG+TGG | + | Chr3:72861332-72861351 | MsG0380015637.01.T01:CDS | 55.0% | |
| AGCGGCGATTACCTTGGGAA+AGG | + | Chr3:72862422-72862441 | MsG0380015637.01.T01:CDS | 55.0% | |
| AGGTTCTTTCTCTCGGTCGG+CGG | + | Chr3:72862906-72862925 | MsG0380015637.01.T01:intron | 55.0% | |
| ATGGCGGCGAGAATGGCATT+TGG | - | Chr3:72863033-72863052 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCAACAGTG+AGG | - | Chr3:72864326-72864345 | None:intergenic | 55.0% | |
| GGCAGGCATGATTGCACTGA+CGG | + | Chr3:72862463-72862482 | MsG0380015637.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 72860708 | 72864380 | 72860708 | ID=MsG0380015637.01;Name=MsG0380015637.01 |
| Chr3 | mRNA | 72860708 | 72864380 | 72860708 | ID=MsG0380015637.01.T01;Parent=MsG0380015637.01;Name=MsG0380015637.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|0.83|0.84|13|0|692 |
| Chr3 | exon | 72860708 | 72861043 | 72860708 | ID=MsG0380015637.01.T01:exon:24152;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72861135 | 72861183 | 72861135 | ID=MsG0380015637.01.T01:exon:24153;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72861277 | 72861484 | 72861277 | ID=MsG0380015637.01.T01:exon:24154;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72861618 | 72861841 | 72861618 | ID=MsG0380015637.01.T01:exon:24155;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72861921 | 72862042 | 72861921 | ID=MsG0380015637.01.T01:exon:24156;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72862139 | 72862252 | 72862139 | ID=MsG0380015637.01.T01:exon:24157;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72862368 | 72862484 | 72862368 | ID=MsG0380015637.01.T01:exon:24158;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72862579 | 72862705 | 72862579 | ID=MsG0380015637.01.T01:exon:24159;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72862908 | 72863194 | 72862908 | ID=MsG0380015637.01.T01:exon:24160;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72863550 | 72863740 | 72863550 | ID=MsG0380015637.01.T01:exon:24161;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72863828 | 72863910 | 72863828 | ID=MsG0380015637.01.T01:exon:24162;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72864006 | 72864082 | 72864006 | ID=MsG0380015637.01.T01:exon:24163;Parent=MsG0380015637.01.T01 |
| Chr3 | exon | 72864237 | 72864380 | 72864237 | ID=MsG0380015637.01.T01:exon:24164;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72860708 | 72861043 | 72860708 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72861135 | 72861183 | 72861135 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72861277 | 72861484 | 72861277 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72861618 | 72861841 | 72861618 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72861921 | 72862042 | 72861921 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72862139 | 72862252 | 72862139 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72862368 | 72862484 | 72862368 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72862579 | 72862705 | 72862579 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72862908 | 72863194 | 72862908 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72863550 | 72863740 | 72863550 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72863828 | 72863910 | 72863828 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72864006 | 72864082 | 72864006 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Chr3 | CDS | 72864237 | 72864380 | 72864237 | ID=MsG0380015637.01.T01:cds;Parent=MsG0380015637.01.T01 |
| Gene Sequence |
| Protein sequence |
