AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024829.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024829.01.T01 MTR_5g017550 95.973 149 6 0 1 149 40 188 7.10e-101 287
MsG0580024829.01.T01 MTR_5g017510 94.667 150 7 1 1 149 40 189 6.88e-97 277
MsG0580024829.01.T01 MTR_5g017560 94.667 150 7 1 1 149 40 189 6.88e-97 277
MsG0580024829.01.T01 MTR_4g086260 52.857 140 65 1 3 142 51 189 1.84e-45 147
MsG0580024829.01.T01 MTR_5g017540 92.208 77 6 0 1 77 15 91 2.79e-44 141
MsG0580024829.01.T01 MTR_3g067610 41.176 136 77 1 7 142 3 135 1.92e-32 112
MsG0580024829.01.T01 MTR_1g032070 43.478 138 75 2 8 143 45 181 1.83e-31 111
MsG0580024829.01.T01 MTR_8g105230 44.681 141 75 2 9 147 36 175 7.95e-31 110
MsG0580024829.01.T01 MTR_5g079340 41.481 135 79 0 8 142 3 137 3.27e-30 106
MsG0580024829.01.T01 MTR_8g107110 38.849 139 85 0 8 146 23 161 2.77e-29 105
MsG0580024829.01.T01 MTR_1g047100 39.855 138 79 2 8 142 3 139 4.60e-27 99.0
MsG0580024829.01.T01 MTR_1g046950 36.957 138 84 1 8 142 3 140 6.34e-27 98.6
MsG0580024829.01.T01 MTR_6g079570 36.765 136 85 1 8 142 25 160 2.74e-26 97.8
MsG0580024829.01.T01 MTR_8g036075 39.189 148 81 3 9 147 49 196 7.74e-26 97.4
MsG0580024829.01.T01 MTR_7g075040 40.397 151 76 4 8 146 46 194 1.40e-25 96.7
MsG0580024829.01.T01 MTR_4g067270 36.879 141 86 2 8 145 4 144 8.20e-24 90.9
MsG0580024829.01.T01 MTR_7g089760 39.583 144 84 2 9 149 5 148 4.44e-23 89.0
MsG0580024829.01.T01 MTR_1g076650 36.957 138 80 2 11 144 14 148 2.20e-22 87.0
MsG0580024829.01.T01 MTR_3g089090 34.091 132 87 0 11 142 7 138 8.83e-22 85.1
MsG0580024829.01.T01 MTR_3g089070 34.091 132 87 0 11 142 8 139 9.06e-22 85.1
MsG0580024829.01.T01 MTR_6g023460 34.351 131 86 0 13 143 12 142 1.05e-21 85.1
MsG0580024829.01.T01 MTR_2g098890 37.500 144 85 2 7 145 62 205 2.15e-21 86.3
MsG0580024829.01.T01 MTR_7g090450 35.714 140 84 3 9 142 73 212 2.16e-21 86.3
MsG0580024829.01.T01 MTR_1g071150 32.877 146 95 1 1 143 1 146 5.82e-21 83.6
MsG0580024829.01.T01 MTR_3g083470 37.143 140 77 2 9 147 93 222 6.19e-21 85.5
MsG0580024829.01.T01 MTR_1g041285 35.714 140 83 2 9 144 12 148 1.13e-20 82.8
MsG0580024829.01.T01 MTR_7g087610 35.252 139 83 2 9 143 12 147 5.82e-20 80.9
MsG0580024829.01.T01 MTR_4g103655 32.836 134 90 0 9 142 6 139 2.44e-19 79.0
MsG0580024829.01.T01 MTR_5g088320 35.252 139 83 2 9 143 12 147 2.97e-19 79.0
MsG0580024829.01.T01 MTR_6g025320 35.252 139 83 2 9 143 12 147 3.61e-19 79.0
MsG0580024829.01.T01 MTR_4g103630 32.836 134 90 0 9 142 6 139 5.53e-19 78.2
MsG0580024829.01.T01 MTR_8g078270 30.597 134 92 1 10 142 54 187 1.35e-18 78.2
MsG0580024829.01.T01 MTR_8g078270 42.188 64 37 0 79 142 51 114 2.11e-11 59.3
MsG0580024829.01.T01 MTR_4g103650 32.836 134 90 0 9 142 2 135 3.46e-18 75.9
MsG0580024829.01.T01 MTR_4g115170 35.443 158 83 3 7 145 62 219 7.95e-18 77.0
MsG0580024829.01.T01 MTR_7g115040 36.364 132 83 1 14 144 17 148 1.35e-17 74.7
MsG0580024829.01.T01 MTR_7g074020 34.507 142 91 2 4 144 25 165 6.67e-17 73.6
MsG0580024829.01.T01 MTR_8g066630 27.660 141 98 1 9 145 17 157 1.41e-16 72.4
MsG0580024829.01.T01 MTR_4g112460 27.536 138 97 1 8 142 10 147 2.44e-16 72.0
MsG0580024829.01.T01 MTR_5g008705 31.496 127 86 1 17 142 2 128 2.88e-16 70.9
MsG0580024829.01.T01 MTR_6g007613 34.286 140 90 2 6 144 26 164 4.91e-16 71.2
MsG0580024829.01.T01 MTR_8g069915 28.859 149 98 4 1 142 1 148 6.20e-16 70.9
MsG0580024829.01.T01 MTR_0168s0120 41.053 95 49 2 53 143 20 111 2.11e-15 68.2
MsG0580024829.01.T01 MTR_6g025320 41.053 95 49 2 53 143 20 111 2.11e-15 68.2
MsG0580024829.01.T01 MTR_3g088655 31.056 161 87 6 1 143 1 155 2.32e-15 69.3
MsG0580024829.01.T01 MTR_1g026190 31.159 138 90 2 10 145 388 522 4.73e-15 71.2
MsG0580024829.01.T01 MTR_5g099240 31.618 136 91 1 10 145 330 463 5.19e-15 71.2
MsG0580024829.01.T01 MTR_5g099240 31.618 136 91 1 10 145 402 535 6.57e-15 70.9
MsG0580024829.01.T01 MTR_7g106710 32.847 137 88 3 10 145 441 574 8.40e-15 70.9
MsG0580024829.01.T01 MTR_1g041150 34.307 137 86 3 10 145 424 557 1.37e-14 70.1
MsG0580024829.01.T01 MTR_5g089320 31.429 140 95 1 10 149 374 512 1.43e-14 70.1
MsG0580024829.01.T01 MTR_1g055255 33.333 138 86 4 10 145 430 563 1.49e-14 70.1
MsG0580024829.01.T01 MTR_5g008695 35.714 98 58 2 48 141 16 112 1.61e-14 65.9
MsG0580024829.01.T01 MTR_4g122260 29.861 144 96 3 4 142 11 154 5.59e-14 65.5
MsG0580024829.01.T01 MTR_0028s0170 31.429 140 95 1 10 149 384 522 5.60e-14 68.2
MsG0580024829.01.T01 MTR_1g030440 31.293 147 84 4 8 143 21 161 5.97e-14 65.9
MsG0580024829.01.T01 MTR_5g092810 30.882 136 93 1 10 145 398 532 7.15e-14 68.2
MsG0580024829.01.T01 MTR_4g132040 33.088 136 90 1 10 145 401 535 1.24e-13 67.4
MsG0580024829.01.T01 MTR_4g132070 29.710 138 92 2 10 145 397 531 2.27e-13 66.6
MsG0580024829.01.T01 MTR_5g009830 30.435 138 91 2 10 145 372 506 3.07e-13 66.2
MsG0580024829.01.T01 MTR_1g096490 32.353 136 90 1 10 145 336 469 3.29e-13 66.2
MsG0580024829.01.T01 MTR_1g052530 33.333 132 88 0 14 145 362 493 4.28e-13 65.9
MsG0580024829.01.T01 MTR_7g074020 33.065 124 82 1 4 126 25 148 5.18e-13 63.2
MsG0580024829.01.T01 MTR_8g099095 30.435 138 91 2 10 145 372 506 5.79e-13 65.5
MsG0580024829.01.T01 MTR_8g095440 33.088 136 89 1 10 145 336 469 8.00e-13 65.1
MsG0580024829.01.T01 MTR_7g091890 31.818 132 90 0 14 145 368 499 8.58e-13 65.1
MsG0580024829.01.T01 MTR_1g054865 32.331 133 88 1 10 142 467 597 9.96e-13 64.7
MsG0580024829.01.T01 MTR_7g068710 28.986 138 98 0 8 145 360 497 1.77e-12 63.9
MsG0580024829.01.T01 MTR_5g022030 30.714 140 82 4 14 145 411 543 2.70e-12 63.5
MsG0580024829.01.T01 MTR_6g007613 32.787 122 81 1 6 126 26 147 3.97e-12 60.8
MsG0580024829.01.T01 MTR_3g051770 29.167 144 96 2 10 147 389 532 1.59e-11 61.2
MsG0580024829.01.T01 MTR_3g098090 30.882 136 92 1 10 145 338 471 1.99e-11 60.8
MsG0580024829.01.T01 MTR_3g098070 31.618 136 91 1 10 145 335 468 4.02e-11 60.1
MsG0580024829.01.T01 MTR_4g082050 43.038 79 42 1 64 142 63 138 4.45e-11 57.8
MsG0580024829.01.T01 MTR_7g074240 29.221 154 80 5 10 142 25 170 8.25e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024829.01.T01 AT2G15680 50.360 139 68 1 4 142 45 182 9.43e-45 145
MsG0580024829.01.T01 AT5G37770 41.958 143 78 1 8 145 16 158 7.16e-34 117
MsG0580024829.01.T01 AT5G37770 41.958 143 78 1 8 145 16 158 7.16e-34 117
MsG0580024829.01.T01 AT1G24620 45.390 141 74 2 9 147 37 176 1.01e-33 117
MsG0580024829.01.T01 AT1G66400 40.288 139 80 1 8 143 14 152 2.20e-31 110
MsG0580024829.01.T01 AT5G17470 43.885 139 74 3 13 147 6 144 1.64e-30 107
MsG0580024829.01.T01 AT1G18210 38.686 137 81 1 6 142 20 153 5.43e-30 107
MsG0580024829.01.T01 AT1G18210 38.686 137 81 1 6 142 20 153 5.43e-30 107
MsG0580024829.01.T01 AT3G03400 43.548 124 67 1 13 133 9 132 9.39e-29 103
MsG0580024829.01.T01 AT2G36180 42.958 142 76 3 10 147 1 141 6.68e-28 101
MsG0580024829.01.T01 AT5G42380 37.956 137 83 1 8 142 48 184 1.16e-27 101
MsG0580024829.01.T01 AT1G73630 37.324 142 85 2 2 142 12 150 1.02e-26 98.6
MsG0580024829.01.T01 AT3G59440 36.691 139 86 1 9 145 51 189 5.23e-24 92.4
MsG0580024829.01.T01 AT2G43290 37.241 145 83 2 9 145 65 209 5.37e-24 93.2
MsG0580024829.01.T01 AT1G76650 34.307 137 90 0 6 142 40 176 2.04e-23 90.5
MsG0580024829.01.T01 AT1G76650 34.307 137 90 0 6 142 40 176 2.04e-23 90.5
MsG0580024829.01.T01 AT4G14640 37.143 140 81 2 9 144 13 149 4.16e-23 89.0
MsG0580024829.01.T01 AT1G05990 38.298 141 83 2 9 145 5 145 7.28e-22 85.9
MsG0580024829.01.T01 AT3G50360 36.957 138 86 1 6 142 24 161 1.08e-21 85.9
MsG0580024829.01.T01 AT3G22930 36.691 139 81 2 9 143 35 170 1.24e-21 85.9
MsG0580024829.01.T01 AT3G50770 33.333 147 92 2 2 142 57 203 4.47e-21 85.1
MsG0580024829.01.T01 AT3G07490 36.111 144 89 2 9 149 5 148 4.88e-21 84.0
MsG0580024829.01.T01 AT4G14640 36.508 126 73 2 23 144 9 131 5.65e-21 83.2
MsG0580024829.01.T01 AT4G03290 35.417 144 87 2 9 146 5 148 6.80e-20 80.9
MsG0580024829.01.T01 AT5G21274 35.971 139 82 2 9 143 12 147 1.60e-19 79.7
MsG0580024829.01.T01 AT3G56800 35.971 139 82 2 9 143 12 147 2.21e-19 79.3
MsG0580024829.01.T01 AT2G27030 35.971 139 82 2 9 143 12 147 2.21e-19 79.3
MsG0580024829.01.T01 AT2G41110 35.971 139 82 2 9 143 12 147 2.21e-19 79.3
MsG0580024829.01.T01 AT5G37780 35.252 139 83 2 9 143 12 147 2.33e-19 79.3
MsG0580024829.01.T01 AT1G66410 35.252 139 83 2 9 143 12 147 2.33e-19 79.3
MsG0580024829.01.T01 AT1G76640 33.566 143 92 1 3 142 16 158 2.83e-19 79.3
MsG0580024829.01.T01 AT2G27030 34.965 143 86 2 9 147 12 151 3.01e-19 79.7
MsG0580024829.01.T01 AT3G43810 35.252 139 83 2 9 143 12 147 3.78e-19 79.0
MsG0580024829.01.T01 AT4G12860 38.028 142 85 2 7 145 3 144 4.06e-19 79.0
MsG0580024829.01.T01 AT3G43810 34.694 147 87 3 9 149 12 155 5.58e-19 80.1
MsG0580024829.01.T01 AT2G41410 32.143 140 89 4 9 143 70 208 5.29e-18 77.4
MsG0580024829.01.T01 AT3G03410 35.338 133 78 1 11 143 4 128 7.91e-18 75.1
MsG0580024829.01.T01 AT1G32250 28.767 146 89 3 8 142 15 156 8.41e-18 75.9
MsG0580024829.01.T01 AT1G76650 31.387 137 84 1 6 142 40 166 1.75e-17 75.1
MsG0580024829.01.T01 AT3G10190 33.088 136 89 2 9 142 70 205 2.51e-17 75.5
MsG0580024829.01.T01 AT1G18530 31.884 138 89 3 9 142 7 143 8.27e-17 72.8
MsG0580024829.01.T01 AT4G04695 34.559 136 88 1 10 145 337 471 2.27e-16 75.1
MsG0580024829.01.T01 AT5G37780 34.400 125 75 2 23 143 13 134 2.52e-16 71.2
MsG0580024829.01.T01 AT2G41110 33.113 151 82 3 9 143 12 159 2.53e-16 71.6
MsG0580024829.01.T01 AT5G04870 35.507 138 83 4 10 145 456 589 3.12e-16 74.7
MsG0580024829.01.T01 AT1G66410 34.400 125 75 2 23 143 36 157 3.45e-16 71.2
MsG0580024829.01.T01 AT4G37010 31.429 140 91 2 6 142 24 161 4.25e-16 71.2
MsG0580024829.01.T01 AT4G37010 31.429 140 91 2 6 142 28 165 4.38e-16 71.2
MsG0580024829.01.T01 AT5G37780 34.400 125 75 2 23 143 41 162 5.05e-16 71.2
MsG0580024829.01.T01 AT5G37780 34.400 125 75 2 23 143 52 173 5.50e-16 71.2
MsG0580024829.01.T01 AT2G41100 32.692 156 86 4 9 146 66 220 7.88e-16 72.8
MsG0580024829.01.T01 AT2G41100 32.692 156 86 4 9 146 66 220 7.88e-16 72.8
MsG0580024829.01.T01 AT2G41100 32.692 156 86 4 9 146 66 220 7.88e-16 72.8
MsG0580024829.01.T01 AT2G17290 34.559 136 87 1 10 145 391 524 8.34e-16 73.6
MsG0580024829.01.T01 AT2G17290 34.559 136 87 1 10 145 391 524 8.34e-16 73.6
MsG0580024829.01.T01 AT5G23580 33.835 133 86 1 10 142 328 458 1.12e-15 73.2
MsG0580024829.01.T01 AT2G41100 32.692 156 86 4 9 146 101 255 1.18e-15 72.8
MsG0580024829.01.T01 AT2G41100 31.126 151 87 3 9 142 12 162 3.11e-13 65.9
MsG0580024829.01.T01 AT2G41100 32.692 156 86 4 9 146 101 255 1.18e-15 72.8
MsG0580024829.01.T01 AT2G41100 31.126 151 87 3 9 142 12 162 3.11e-13 65.9
MsG0580024829.01.T01 AT1G66410 41.053 95 49 2 53 143 20 111 1.60e-15 68.6
MsG0580024829.01.T01 AT1G66410 41.053 95 49 2 53 143 20 111 1.60e-15 68.6
MsG0580024829.01.T01 AT5G19360 33.088 136 90 1 10 145 374 508 1.92e-15 72.4
MsG0580024829.01.T01 AT5G12180 33.088 136 90 1 10 145 379 513 2.18e-15 72.4
MsG0580024829.01.T01 AT3G43810 41.053 95 49 2 53 143 20 111 2.21e-15 68.2
MsG0580024829.01.T01 AT3G43810 41.053 95 49 2 53 143 20 111 2.21e-15 68.2
MsG0580024829.01.T01 AT3G03000 30.714 140 93 3 9 145 20 158 2.67e-15 69.3
MsG0580024829.01.T01 AT3G10660 34.307 137 86 3 10 145 492 625 5.04e-15 71.2
MsG0580024829.01.T01 AT3G10660 34.307 137 86 3 10 145 492 625 5.04e-15 71.2
MsG0580024829.01.T01 AT4G04720 33.088 136 90 1 10 145 385 519 5.46e-15 71.2
MsG0580024829.01.T01 AT4G04720 33.088 136 90 1 10 145 385 519 5.46e-15 71.2
MsG0580024829.01.T01 AT4G38230 34.559 136 87 1 10 145 186 319 7.95e-15 70.5
MsG0580024829.01.T01 AT3G25600 28.986 138 93 3 9 142 12 148 8.95e-15 67.8
MsG0580024829.01.T01 AT4G38230 34.559 136 87 1 10 145 330 463 1.21e-14 70.1
MsG0580024829.01.T01 AT4G38230 34.559 136 87 1 10 145 330 463 1.21e-14 70.1
MsG0580024829.01.T01 AT4G38230 34.559 136 87 1 10 145 360 493 1.23e-14 70.1
MsG0580024829.01.T01 AT4G09570 34.559 136 87 2 10 145 331 464 1.68e-14 69.7
MsG0580024829.01.T01 AT4G04700 33.835 133 87 1 10 142 337 468 1.80e-14 69.7
MsG0580024829.01.T01 AT1G21550 31.293 147 90 4 8 144 9 154 2.19e-14 66.6
MsG0580024829.01.T01 AT5G44460 36.301 146 80 5 10 142 29 174 2.32e-14 67.0
MsG0580024829.01.T01 AT5G12480 33.577 137 90 1 10 145 365 501 2.49e-14 69.3
MsG0580024829.01.T01 AT5G12480 33.577 137 90 1 10 145 271 407 2.66e-14 69.3
MsG0580024829.01.T01 AT2G41090 31.852 135 90 1 9 143 12 144 3.30e-14 67.0
MsG0580024829.01.T01 AT1G35670 33.824 136 88 2 10 145 332 465 3.42e-14 68.9
MsG0580024829.01.T01 AT2G17890 33.824 136 77 3 14 142 420 549 4.37e-14 68.6
MsG0580024829.01.T01 AT4G04710 33.088 136 90 1 10 145 338 472 4.46e-14 68.6
MsG0580024829.01.T01 AT4G04710 33.088 136 90 1 10 145 324 458 4.60e-14 68.6
MsG0580024829.01.T01 AT4G04710 33.088 136 90 1 10 145 351 485 5.45e-14 68.6
MsG0580024829.01.T01 AT4G23650 31.884 138 89 2 10 145 384 518 6.09e-14 68.2
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT4G04740 30.147 136 94 1 10 145 374 508 9.01e-14 67.8
MsG0580024829.01.T01 AT2G38910 34.559 136 85 3 10 144 440 572 1.02e-13 67.8
MsG0580024829.01.T01 AT4G35310 32.353 136 90 1 10 145 403 536 1.12e-13 67.4
MsG0580024829.01.T01 AT4G35310 32.353 136 90 1 10 145 403 536 1.12e-13 67.4
MsG0580024829.01.T01 AT3G51850 29.710 138 97 0 8 145 358 495 1.72e-13 67.0
MsG0580024829.01.T01 AT4G36070 32.877 146 83 5 8 145 377 515 1.85e-13 67.0
MsG0580024829.01.T01 AT4G36070 32.877 146 83 5 8 145 377 515 1.87e-13 67.0
MsG0580024829.01.T01 AT1G50700 31.618 136 92 1 10 145 379 513 5.63e-13 65.5
MsG0580024829.01.T01 AT4G04710 32.609 138 90 2 10 145 351 487 8.61e-13 65.1
MsG0580024829.01.T01 AT3G57530 33.083 133 86 2 14 145 373 503 9.63e-13 64.7
MsG0580024829.01.T01 AT4G21940 31.884 138 89 2 10 145 407 541 1.63e-12 64.3
MsG0580024829.01.T01 AT4G21940 31.884 138 89 2 10 145 407 541 1.66e-12 64.3
MsG0580024829.01.T01 AT5G66210 32.374 139 75 4 14 142 374 503 4.26e-12 63.2
MsG0580024829.01.T01 AT5G66210 32.374 139 75 4 14 142 374 503 4.26e-12 63.2
MsG0580024829.01.T01 AT3G20410 30.882 136 93 1 10 145 397 531 1.25e-11 61.6
MsG0580024829.01.T01 AT3G20410 30.882 136 93 1 10 145 397 531 1.25e-11 61.6
MsG0580024829.01.T01 AT1G74740 30.597 134 91 2 13 145 368 500 1.29e-11 61.6
MsG0580024829.01.T01 AT5G19450 32.847 137 91 1 10 145 363 499 1.30e-11 61.6
MsG0580024829.01.T01 AT5G19450 32.847 137 91 1 10 145 363 499 1.30e-11 61.6
MsG0580024829.01.T01 AT3G01830 29.286 140 94 3 6 142 8 145 1.35e-11 58.9
MsG0580024829.01.T01 AT1G18890 33.333 138 88 4 10 145 369 504 1.47e-11 61.6
MsG0580024829.01.T01 AT1G61950 30.986 142 90 3 10 149 405 540 1.64e-11 61.2
MsG0580024829.01.T01 AT2G41100 34.821 112 54 4 53 146 20 130 2.86e-11 59.3
MsG0580024829.01.T01 AT4G20780 29.870 154 87 3 10 142 30 183 3.46e-11 58.9
MsG0580024829.01.T01 AT1G76040 29.412 136 95 1 10 145 417 551 4.94e-11 60.1
MsG0580024829.01.T01 AT1G76040 29.412 136 95 1 10 145 179 313 7.24e-11 59.3
MsG0580024829.01.T01 AT1G76040 29.412 136 95 1 10 145 179 313 7.24e-11 59.3
MsG0580024829.01.T01 AT2G41860 31.818 132 90 0 14 145 364 495 9.77e-11 58.9

Find 31 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCATTTCATCTTTCTT+TGG 0.177414 5:+10433644 None:intergenic
TTTCAAGTATTTGATATAAA+TGG 0.216373 5:-10433401 MsG0580024829.01.T01:CDS
CATAGACTTTAAAGAGTTCA+TGG 0.277650 5:-10433477 MsG0580024829.01.T01:CDS
CCTTAGTGCTTGTAAGAAAA+TGG 0.341545 5:-10433315 MsG0580024829.01.T01:CDS
CAAAGAAAGATGAAATGAAA+TGG 0.359646 5:-10433643 MsG0580024829.01.T01:CDS
AGCTGCAAAGGCTTTGGATA+AGG 0.388502 5:-10433561 MsG0580024829.01.T01:CDS
TAAAGCAGCTGCAAAGGCTT+TGG 0.392833 5:-10433567 MsG0580024829.01.T01:CDS
AATTGTCTCAAATATTTAAG+AGG 0.413219 5:-10433355 MsG0580024829.01.T01:CDS
TCTCAAATATTTAAGAGGTT+AGG 0.421604 5:-10433350 MsG0580024829.01.T01:CDS
GCTGCAAAGGCTTTGGATAA+GGG 0.422855 5:-10433560 MsG0580024829.01.T01:CDS
TCATTTCATCTTTCTTTGGT+TGG 0.424902 5:+10433648 None:intergenic
CAAAGATGGCAAGATTAGTC+TGG 0.440035 5:-10433597 MsG0580024829.01.T01:CDS
AAAGAAAGATGAAATGAAAT+GGG 0.477872 5:-10433642 MsG0580024829.01.T01:CDS
TAGATTTGAATGAGTTTACA+AGG 0.501078 5:-10433259 MsG0580024829.01.T01:CDS
AAAATGGTGAAAGGTGTTGA+TGG 0.531030 5:-10433299 MsG0580024829.01.T01:CDS
ATGGAAATGTTCAATGGAGA+AGG 0.540301 5:-10433458 MsG0580024829.01.T01:CDS
CTGCAAAGGCTTTGGATAAG+GGG 0.540527 5:-10433559 MsG0580024829.01.T01:CDS
AGGCAATAAGATAAAAGAAG+AGG 0.542613 5:-10433438 MsG0580024829.01.T01:CDS
GTATTTGATATAAATGGTGA+TGG 0.547891 5:-10433395 MsG0580024829.01.T01:CDS
GAGTTCATGGAAATGTTCAA+TGG 0.548455 5:-10433464 MsG0580024829.01.T01:CDS
AGAGTATAAAGCAGCTGCAA+AGG 0.556821 5:-10433573 MsG0580024829.01.T01:CDS
GGTGTTGATGGTGATGGAGA+TGG 0.571699 5:-10433287 MsG0580024829.01.T01:CDS
AGTGAAAGCATTTAAAGCAA+TGG 0.579623 5:-10433519 MsG0580024829.01.T01:CDS
GTGAAAGGTGTTGATGGTGA+TGG 0.580268 5:-10433293 MsG0580024829.01.T01:CDS
AAATTCGACACAAACAAAGA+TGG 0.592536 5:-10433611 MsG0580024829.01.T01:CDS
TTTACAAGGATGATGATGAA+TGG 0.601621 5:-10433245 MsG0580024829.01.T01:CDS
TATTTGATATAAATGGTGAT+GGG 0.605312 5:-10433394 MsG0580024829.01.T01:CDS
TGCAAAGGCTTTGGATAAGG+GGG 0.606980 5:-10433558 MsG0580024829.01.T01:CDS
GCAATGGACTCTGACAAAGA+TGG 0.615789 5:-10433503 MsG0580024829.01.T01:CDS
GCTTGTAAGAAAATGGTGAA+AGG 0.660596 5:-10433308 MsG0580024829.01.T01:CDS
TGATGGGAAAATTAGTGCTG+AGG 0.690315 5:-10433378 MsG0580024829.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAGTATTTGATATAAA+TGG - Chr5:10433484-10433503 MsG0580024829.01.T01:CDS 15.0%
!! AAAGAAAGATGAAATGAAAT+GGG - Chr5:10433243-10433262 MsG0580024829.01.T01:CDS 20.0%
!! AATTGTCTCAAATATTTAAG+AGG - Chr5:10433530-10433549 MsG0580024829.01.T01:CDS 20.0%
!! TATTTGATATAAATGGTGAT+GGG - Chr5:10433491-10433510 MsG0580024829.01.T01:CDS 20.0%
! CAAAGAAAGATGAAATGAAA+TGG - Chr5:10433242-10433261 MsG0580024829.01.T01:CDS 25.0%
! CATTTCATTTCATCTTTCTT+TGG + Chr5:10433244-10433263 None:intergenic 25.0%
! GTATTTGATATAAATGGTGA+TGG - Chr5:10433490-10433509 MsG0580024829.01.T01:CDS 25.0%
! TAGATTTGAATGAGTTTACA+AGG - Chr5:10433626-10433645 MsG0580024829.01.T01:CDS 25.0%
! TCTCAAATATTTAAGAGGTT+AGG - Chr5:10433535-10433554 MsG0580024829.01.T01:CDS 25.0%
AAATTCGACACAAACAAAGA+TGG - Chr5:10433274-10433293 MsG0580024829.01.T01:CDS 30.0%
AGGCAATAAGATAAAAGAAG+AGG - Chr5:10433447-10433466 MsG0580024829.01.T01:CDS 30.0%
TCATTTCATCTTTCTTTGGT+TGG + Chr5:10433240-10433259 None:intergenic 30.0%
! CATAGACTTTAAAGAGTTCA+TGG - Chr5:10433408-10433427 MsG0580024829.01.T01:CDS 30.0%
! TTTACAAGGATGATGATGAA+TGG - Chr5:10433640-10433659 MsG0580024829.01.T01:CDS 30.0%
!! AGTGAAAGCATTTAAAGCAA+TGG - Chr5:10433366-10433385 MsG0580024829.01.T01:CDS 30.0%
ATGGAAATGTTCAATGGAGA+AGG - Chr5:10433427-10433446 MsG0580024829.01.T01:CDS 35.0%
CCTTAGTGCTTGTAAGAAAA+TGG - Chr5:10433570-10433589 MsG0580024829.01.T01:CDS 35.0%
GAGTTCATGGAAATGTTCAA+TGG - Chr5:10433421-10433440 MsG0580024829.01.T01:CDS 35.0%
GCTTGTAAGAAAATGGTGAA+AGG - Chr5:10433577-10433596 MsG0580024829.01.T01:CDS 35.0%
! CCATTTTCTTACAAGCACTA+AGG + Chr5:10433573-10433592 None:intergenic 35.0%
!! AAAATGGTGAAAGGTGTTGA+TGG - Chr5:10433586-10433605 MsG0580024829.01.T01:CDS 35.0%
AGAGTATAAAGCAGCTGCAA+AGG - Chr5:10433312-10433331 MsG0580024829.01.T01:CDS 40.0%
TGATGGGAAAATTAGTGCTG+AGG - Chr5:10433507-10433526 MsG0580024829.01.T01:CDS 40.0%
! CAAAGATGGCAAGATTAGTC+TGG - Chr5:10433288-10433307 MsG0580024829.01.T01:CDS 40.0%
TAAAGCAGCTGCAAAGGCTT+TGG - Chr5:10433318-10433337 MsG0580024829.01.T01:CDS 45.0%
! GCAATGGACTCTGACAAAGA+TGG - Chr5:10433382-10433401 MsG0580024829.01.T01:CDS 45.0%
!! AGCTGCAAAGGCTTTGGATA+AGG - Chr5:10433324-10433343 MsG0580024829.01.T01:CDS 45.0%
!! CTGCAAAGGCTTTGGATAAG+GGG - Chr5:10433326-10433345 MsG0580024829.01.T01:CDS 45.0%
!! GCTGCAAAGGCTTTGGATAA+GGG - Chr5:10433325-10433344 MsG0580024829.01.T01:CDS 45.0%
!! GTGAAAGGTGTTGATGGTGA+TGG - Chr5:10433592-10433611 MsG0580024829.01.T01:CDS 45.0%
!! TGCAAAGGCTTTGGATAAGG+GGG - Chr5:10433327-10433346 MsG0580024829.01.T01:CDS 45.0%
!! AAGGCTTTGGATAAGGGGGT+TGG - Chr5:10433331-10433350 MsG0580024829.01.T01:CDS 50.0%
!! AGGCTTTGGATAAGGGGGTT+GGG - Chr5:10433332-10433351 MsG0580024829.01.T01:CDS 50.0%
!! GGTGTTGATGGTGATGGAGA+TGG - Chr5:10433598-10433617 MsG0580024829.01.T01:CDS 50.0%
!! GGCTTTGGATAAGGGGGTTG+GGG - Chr5:10433333-10433352 MsG0580024829.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 10433229 10433678 10433229 ID=MsG0580024829.01;Name=MsG0580024829.01
Chr5 mRNA 10433229 10433678 10433229 ID=MsG0580024829.01.T01;Parent=MsG0580024829.01;Name=MsG0580024829.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|149
Chr5 exon 10433229 10433678 10433229 ID=MsG0580024829.01.T01:exon:1928;Parent=MsG0580024829.01.T01
Chr5 CDS 10433229 10433678 10433229 ID=MsG0580024829.01.T01:cds;Parent=MsG0580024829.01.T01
Gene Sequence

>MsG0580024829.01.T01

ATGAGTTTCCAACCAAAGAAAGATGAAATGAAATGGGTGTTTGAGAAATTCGACACAAACAAAGATGGCAAGATTAGTCTGGAAGAGTATAAAGCAGCTGCAAAGGCTTTGGATAAGGGGGTTGGGGATACTGATGCAGTGAAAGCATTTAAAGCAATGGACTCTGACAAAGATGGCTTCATAGACTTTAAAGAGTTCATGGAAATGTTCAATGGAGAAGGCAATAAGATAAAAGAAGAGGAGATTAAGAGTGCTTTTCAAGTATTTGATATAAATGGTGATGGGAAAATTAGTGCTGAGGAATTGTCTCAAATATTTAAGAGGTTAGGAGAGAGTTGTAGCCTTAGTGCTTGTAAGAAAATGGTGAAAGGTGTTGATGGTGATGGAGATGGTCTTATAGATTTGAATGAGTTTACAAGGATGATGATGAATGGCAAGAAATGTGCCTAA

Protein sequence

>MsG0580024829.01.T01

MSFQPKKDEMKWVFEKFDTNKDGKISLEEYKAAAKALDKGVGDTDAVKAFKAMDSDKDGFIDFKEFMEMFNGEGNKIKEEEIKSAFQVFDINGDGKISAEELSQIFKRLGESCSLSACKKMVKGVDGDGDGLIDLNEFTRMMMNGKKCA*