Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024862.01.T01 | XP_003611830.1 | 82.625 | 259 | 17 | 2 | 1 | 231 | 1 | 259 | 3.94E-150 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024862.01.T01 | Q6RYA0 | 38.077 | 260 | 128 | 5 | 2 | 231 | 3 | 259 | 1.58E-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024862.01.T01 | G7K9E5 | 82.625 | 259 | 17 | 2 | 1 | 231 | 1 | 259 | 1.88e-150 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048016.01 | MsG0580024862.01 | 0.825292 | 5.075898e-54 | 4.607536e-51 |
| MsG0080048982.01 | MsG0580024862.01 | 0.829056 | 6.370738e-55 | 6.446978e-52 |
| MsG0180000114.01 | MsG0580024862.01 | 0.811424 | 7.050834e-51 | 4.362970e-48 |
| MsG0180000271.01 | MsG0580024862.01 | 0.811366 | 7.257191e-51 | 4.483576e-48 |
| MsG0180002955.01 | MsG0580024862.01 | 0.820570 | 6.396907e-53 | 5.079868e-50 |
| MsG0180003357.01 | MsG0580024862.01 | 0.800682 | 1.285172e-48 | 6.021131e-46 |
| MsG0180004599.01 | MsG0580024862.01 | 0.812060 | 5.126705e-51 | 3.226336e-48 |
| MsG0180005106.01 | MsG0580024862.01 | 0.800023 | 1.750171e-48 | 8.063828e-46 |
| MsG0180005160.01 | MsG0580024862.01 | 0.825935 | 3.572413e-54 | 3.302876e-51 |
| MsG0180005354.01 | MsG0580024862.01 | 0.812433 | 4.250499e-51 | 2.702342e-48 |
| MsG0180005787.01 | MsG0580024862.01 | 0.814278 | 1.671357e-51 | 1.116618e-48 |
| MsG0180005960.01 | MsG0580024862.01 | 0.813720 | 2.218831e-51 | 1.460157e-48 |
| MsG0280006440.01 | MsG0580024862.01 | 0.826515 | 2.600747e-54 | 2.444299e-51 |
| MsG0280011330.01 | MsG0580024862.01 | 0.807736 | 4.368573e-50 | 2.452248e-47 |
| MsG0280011376.01 | MsG0580024862.01 | 0.815366 | 9.590703e-52 | 6.599308e-49 |
| MsG0280011401.01 | MsG0580024862.01 | 0.818144 | 2.285247e-52 | 1.696745e-49 |
| MsG0380011531.01 | MsG0580024862.01 | 0.822126 | 2.799140e-53 | 2.322062e-50 |
| MsG0380011537.01 | MsG0580024862.01 | 0.808178 | 3.517997e-50 | 1.997899e-47 |
| MsG0380013853.01 | MsG0580024862.01 | 0.827243 | 1.741926e-54 | 1.672203e-51 |
| MsG0380014727.01 | MsG0580024862.01 | 0.820621 | 6.228000e-53 | 4.952435e-50 |
| MsG0480018473.01 | MsG0580024862.01 | 0.810603 | 1.061846e-50 | 6.428988e-48 |
| MsG0480018847.01 | MsG0580024862.01 | 0.824779 | 6.707116e-54 | 6.000126e-51 |
| MsG0480018995.01 | MsG0580024862.01 | 0.844066 | 9.513836e-59 | 1.518230e-55 |
| MsG0480022933.01 | MsG0580024862.01 | 0.803372 | 3.596942e-49 | 1.804427e-46 |
| MsG0480023638.01 | MsG0580024862.01 | 0.819471 | 1.141626e-52 | 8.793494e-50 |
| MsG0480023937.01 | MsG0580024862.01 | 0.800234 | 1.586022e-48 | 7.346669e-46 |
| MsG0580024829.01 | MsG0580024862.01 | 0.809139 | 2.193199e-50 | 1.277487e-47 |
| MsG0580024830.01 | MsG0580024862.01 | 0.806627 | 7.504373e-50 | 4.092632e-47 |
| MsG0580024862.01 | MsG0580026067.01 | 0.810939 | 8.981337e-51 | 5.487224e-48 |
| MsG0580024862.01 | MsG0580027449.01 | 0.806017 | 1.008814e-49 | 5.417248e-47 |
| MsG0580024862.01 | MsG0680031334.01 | 0.805153 | 1.531455e-49 | 8.043223e-47 |
| MsG0580024862.01 | MsG0680031377.01 | -0.825718 | 4.024189e-54 | 3.697335e-51 |
| MsG0580024862.01 | MsG0780036117.01 | 0.817509 | 3.179051e-52 | 2.319717e-49 |
| MsG0580024862.01 | MsG0780037330.01 | 0.807867 | 4.097616e-50 | 2.307846e-47 |
| MsG0580024862.01 | MsG0780037701.01 | 0.806453 | 8.166318e-50 | 4.434280e-47 |
| MsG0580024862.01 | MsG0780037848.01 | 0.801519 | 8.666115e-49 | 4.147119e-46 |
| MsG0580024862.01 | MsG0780038833.01 | 0.802542 | 5.339010e-49 | 2.622268e-46 |
| MsG0580024862.01 | MsG0780038911.01 | 0.806954 | 6.399675e-50 | 3.519919e-47 |
| MsG0580024862.01 | MsG0780039143.01 | 0.827942 | 1.183851e-54 | 1.159819e-51 |
| MsG0580024862.01 | MsG0880042622.01 | 0.810850 | 9.387443e-51 | 5.721516e-48 |
| MsG0580024862.01 | MsG0880044638.01 | 0.829008 | 6.544954e-55 | 6.613916e-52 |
| MsG0580024862.01 | MsG0880047152.01 | 0.807796 | 4.243947e-50 | 2.385918e-47 |
| MsG0580024862.01 | MsG0880047267.01 | 0.803324 | 3.679991e-49 | 1.843820e-46 |
| MsG0380015637.01 | MsG0580024862.01 | 0.829949 | 3.865863e-55 | 4.015806e-52 |
| MsG0380016182.01 | MsG0580024862.01 | 0.804113 | 2.524259e-49 | 1.290722e-46 |
| MsG0380016740.01 | MsG0580024862.01 | 0.850732 | 1.404132e-60 | 2.776979e-57 |
| MsG0380017126.01 | MsG0580024862.01 | 0.819002 | 1.459544e-52 | 1.109796e-49 |
| MsG0380017512.01 | MsG0580024862.01 | 0.802467 | 5.534021e-49 | 2.712832e-46 |
| MsG0480018402.01 | MsG0580024862.01 | 0.819454 | 1.151483e-52 | 8.865302e-50 |
| MsG0280006669.01 | MsG0580024862.01 | 0.828978 | 6.654398e-55 | 6.718382e-52 |
| MsG0280007775.01 | MsG0580024862.01 | 0.800201 | 1.610350e-48 | 7.453149e-46 |
| MsG0280008932.01 | MsG0580024862.01 | 0.823874 | 1.095131e-53 | 9.546699e-51 |
| MsG0280010316.01 | MsG0580024862.01 | 0.804494 | 2.102365e-49 | 1.085524e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024862.01.T01 | MTR_5g018320 | 82.625 | 259 | 17 | 2 | 1 | 231 | 1 | 259 | 4.77e-154 | 429 |
| MsG0580024862.01.T01 | MTR_5g018300 | 73.828 | 256 | 39 | 2 | 4 | 231 | 7 | 262 | 9.08e-135 | 380 |
| MsG0580024862.01.T01 | MTR_5g018280 | 69.466 | 262 | 48 | 4 | 1 | 231 | 1 | 261 | 1.04e-123 | 352 |
| MsG0580024862.01.T01 | MTR_8g007675 | 44.961 | 258 | 112 | 4 | 3 | 231 | 30 | 286 | 1.96e-71 | 220 |
| MsG0580024862.01.T01 | MTR_8g008500 | 44.656 | 262 | 112 | 6 | 2 | 231 | 24 | 284 | 9.62e-68 | 211 |
| MsG0580024862.01.T01 | MTR_8g008505 | 43.077 | 260 | 117 | 5 | 1 | 231 | 24 | 281 | 8.86e-66 | 205 |
| MsG0580024862.01.T01 | MTR_8g008660 | 41.313 | 259 | 119 | 5 | 2 | 231 | 24 | 278 | 1.61e-62 | 197 |
| MsG0580024862.01.T01 | MTR_3g464040 | 40.769 | 260 | 121 | 5 | 1 | 231 | 15 | 270 | 5.27e-61 | 193 |
| MsG0580024862.01.T01 | MTR_8g007670 | 39.147 | 258 | 126 | 5 | 4 | 231 | 6 | 262 | 6.38e-55 | 177 |
| MsG0580024862.01.T01 | MTR_8g079120 | 37.984 | 258 | 123 | 6 | 4 | 231 | 10 | 260 | 4.38e-49 | 162 |
| MsG0580024862.01.T01 | MTR_8g007670 | 39.394 | 231 | 119 | 7 | 4 | 231 | 6 | 218 | 1.60e-44 | 149 |
| MsG0580024862.01.T01 | MTR_5g018350 | 34.109 | 258 | 131 | 6 | 5 | 231 | 7 | 256 | 8.19e-41 | 140 |
| MsG0580024862.01.T01 | MTR_5g018365 | 34.109 | 258 | 133 | 5 | 4 | 231 | 11 | 261 | 1.15e-36 | 130 |
| MsG0580024862.01.T01 | MTR_8g079120 | 38.415 | 164 | 67 | 4 | 4 | 138 | 52 | 210 | 2.94e-31 | 115 |
| MsG0580024862.01.T01 | MTR_7g015220 | 31.783 | 258 | 140 | 5 | 1 | 228 | 120 | 371 | 3.29e-30 | 115 |
| MsG0580024862.01.T01 | MTR_5g068100 | 28.958 | 259 | 146 | 6 | 4 | 231 | 29 | 280 | 6.35e-28 | 107 |
| MsG0580024862.01.T01 | MTR_3g093730 | 29.502 | 261 | 145 | 7 | 4 | 233 | 35 | 287 | 6.10e-25 | 100 |
| MsG0580024862.01.T01 | MTR_3g005410 | 26.538 | 260 | 152 | 6 | 1 | 228 | 90 | 342 | 1.83e-24 | 99.8 |
| MsG0580024862.01.T01 | MTR_3g093730 | 28.033 | 239 | 132 | 7 | 4 | 233 | 35 | 242 | 1.81e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024862.01.T01 | AT2G23610 | 36.782 | 261 | 126 | 7 | 4 | 231 | 8 | 262 | 5.86e-47 | 157 |
| MsG0580024862.01.T01 | AT3G50440 | 35.938 | 256 | 131 | 5 | 6 | 231 | 22 | 274 | 1.24e-46 | 156 |
| MsG0580024862.01.T01 | AT2G23560 | 38.023 | 263 | 122 | 8 | 2 | 231 | 5 | 259 | 1.99e-45 | 152 |
| MsG0580024862.01.T01 | AT2G23580 | 36.882 | 263 | 128 | 8 | 2 | 231 | 5 | 262 | 2.05e-43 | 147 |
| MsG0580024862.01.T01 | AT2G23620 | 32.946 | 258 | 142 | 4 | 4 | 232 | 8 | 263 | 9.04e-42 | 143 |
| MsG0580024862.01.T01 | AT4G37150 | 33.716 | 261 | 133 | 6 | 4 | 231 | 2 | 255 | 1.16e-40 | 140 |
| MsG0580024862.01.T01 | AT2G23550 | 34.981 | 263 | 133 | 7 | 2 | 231 | 12 | 269 | 6.57e-40 | 139 |
| MsG0580024862.01.T01 | AT2G23550 | 34.981 | 263 | 133 | 7 | 2 | 231 | 5 | 262 | 6.61e-40 | 139 |
| MsG0580024862.01.T01 | AT2G23600 | 32.685 | 257 | 142 | 4 | 4 | 231 | 8 | 262 | 1.25e-39 | 138 |
| MsG0580024862.01.T01 | AT2G23600 | 32.685 | 257 | 142 | 4 | 4 | 231 | 23 | 277 | 1.56e-39 | 138 |
| MsG0580024862.01.T01 | AT5G10300 | 35.156 | 256 | 135 | 7 | 5 | 232 | 6 | 258 | 1.27e-38 | 135 |
| MsG0580024862.01.T01 | AT2G23610 | 34.783 | 230 | 128 | 6 | 4 | 231 | 8 | 217 | 7.41e-38 | 132 |
| MsG0580024862.01.T01 | AT2G23590 | 30.159 | 252 | 152 | 5 | 1 | 231 | 23 | 271 | 2.60e-34 | 124 |
| MsG0580024862.01.T01 | AT2G23550 | 34.298 | 242 | 134 | 9 | 2 | 231 | 5 | 233 | 1.61e-30 | 113 |
| MsG0580024862.01.T01 | AT5G58310 | 29.588 | 267 | 144 | 6 | 1 | 230 | 1 | 260 | 4.54e-30 | 113 |
| MsG0580024862.01.T01 | AT5G10300 | 34.694 | 196 | 100 | 5 | 5 | 173 | 6 | 200 | 1.17e-27 | 105 |
| MsG0580024862.01.T01 | AT4G16690 | 30.350 | 257 | 127 | 6 | 5 | 224 | 12 | 253 | 8.73e-27 | 104 |
| MsG0580024862.01.T01 | AT2G23600 | 34.356 | 163 | 79 | 2 | 4 | 138 | 23 | 185 | 1.67e-26 | 102 |
| MsG0580024862.01.T01 | AT3G29770 | 31.395 | 258 | 141 | 6 | 1 | 228 | 134 | 385 | 4.17e-26 | 105 |
| MsG0580024862.01.T01 | AT2G23580 | 37.126 | 167 | 70 | 5 | 2 | 136 | 5 | 168 | 4.91e-26 | 101 |
| MsG0580024862.01.T01 | AT4G37140 | 52.000 | 75 | 36 | 0 | 4 | 78 | 2 | 76 | 9.31e-26 | 97.4 |
| MsG0580024862.01.T01 | AT4G37140 | 52.000 | 75 | 36 | 0 | 4 | 78 | 2 | 76 | 1.31e-25 | 98.2 |
| MsG0580024862.01.T01 | AT1G26360 | 30.116 | 259 | 141 | 5 | 2 | 228 | 186 | 436 | 1.99e-25 | 103 |
| MsG0580024862.01.T01 | AT3G10870 | 30.469 | 256 | 141 | 7 | 5 | 228 | 20 | 270 | 2.03e-25 | 101 |
| MsG0580024862.01.T01 | AT1G33990 | 28.295 | 258 | 144 | 6 | 4 | 228 | 96 | 345 | 2.61e-25 | 102 |
| MsG0580024862.01.T01 | AT4G09900 | 28.462 | 260 | 147 | 6 | 1 | 228 | 94 | 346 | 3.94e-25 | 101 |
| MsG0580024862.01.T01 | AT2G23550 | 36.527 | 167 | 71 | 4 | 2 | 136 | 12 | 175 | 1.15e-24 | 97.4 |
| MsG0580024862.01.T01 | AT1G69240 | 28.016 | 257 | 151 | 6 | 2 | 228 | 184 | 436 | 2.49e-23 | 97.8 |
| MsG0580024862.01.T01 | AT2G23570 | 39.506 | 162 | 90 | 4 | 74 | 231 | 21 | 178 | 3.74e-23 | 92.8 |
| MsG0580024862.01.T01 | AT3G29770 | 42.500 | 80 | 46 | 0 | 1 | 80 | 134 | 213 | 2.44e-18 | 82.0 |
Find 56 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5:-10961008 | MsG0580024862.01.T01:CDS |
| TATTGATTGGGTATTGAAAA+AGG | 0.168391 | 5:+10960453 | None:intergenic |
| TCAATACCCAATCAATAATA+AGG | 0.199506 | 5:-10960447 | MsG0580024862.01.T01:three_prime_UTR |
| CCCTTGCAATGTCTTTAATA+AGG | 0.211857 | 5:-10960841 | MsG0580024862.01.T01:CDS |
| GAACCATTTGGTTTATCATT+AGG | 0.217887 | 5:+10961020 | None:intergenic |
| AACCATTTGGTTTATCATTA+GGG | 0.239611 | 5:+10961021 | None:intergenic |
| TTTGCTGATCAAGAACTATT+AGG | 0.294996 | 5:-10960806 | MsG0580024862.01.T01:CDS |
| AGACTATCCTTATTATTGAT+TGG | 0.308025 | 5:+10960440 | None:intergenic |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5:-10963147 | MsG0580024862.01.T01:CDS |
| GACTATCCTTATTATTGATT+GGG | 0.347229 | 5:+10960441 | None:intergenic |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5:+10961008 | None:intergenic |
| AGACATTTCGTGTTGGTTCA+TGG | 0.351633 | 5:-10963240 | MsG0580024862.01.T01:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5:+10963117 | None:intergenic |
| ATTGCAGTATCAACAAAGAT+TGG | 0.372297 | 5:-10961081 | MsG0580024862.01.T01:intron |
| CTCTTTCGGTTTGGAGAACA+TGG | 0.400553 | 5:+10960628 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5:+10963121 | None:intergenic |
| GCGTATCTTCAAGAAATTGC+GGG | 0.452472 | 5:-10960599 | MsG0580024862.01.T01:CDS |
| ATTGCTCTGTTGAAATCTGC+TGG | 0.456073 | 5:-10963183 | MsG0580024862.01.T01:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.457852 | 5:-10963215 | MsG0580024862.01.T01:CDS |
| TTGGTTCATGGAGCTTGCCA+TGG | 0.459523 | 5:-10963228 | MsG0580024862.01.T01:CDS |
| AGAGTCAAGAAGCTTAGATC+AGG | 0.464438 | 5:+10962924 | None:intergenic |
| CATAATCTTTGTGTCCAAGC+TGG | 0.478530 | 5:+10961055 | None:intergenic |
| TGGTTCATGGAGCTTGCCAT+GGG | 0.483424 | 5:-10963227 | MsG0580024862.01.T01:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.486986 | 5:+10960671 | None:intergenic |
| TGATCAGCAAAGCTACGAAC+AGG | 0.487222 | 5:+10960818 | None:intergenic |
| ATGGAGCTTGCCATGGGGCA+TGG | 0.500266 | 5:-10963221 | MsG0580024862.01.T01:CDS |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5:+10963145 | None:intergenic |
| GCCTTATTAAAGACATTGCA+AGG | 0.509202 | 5:+10960840 | None:intergenic |
| AGCCCTAATGATAAACCAAA+TGG | 0.509653 | 5:-10961023 | MsG0580024862.01.T01:CDS |
| AGGATAACTCTTTGCTCTTG+TGG | 0.521619 | 5:+10963045 | None:intergenic |
| ACAAAGATTGGATTCCAGCT+TGG | 0.525705 | 5:-10961069 | MsG0580024862.01.T01:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5:-10963118 | MsG0580024862.01.T01:CDS |
| TTACCGAAGTTCTTGAGTGA+TGG | 0.541422 | 5:+10960511 | None:intergenic |
| GATCTTAGAAATTCAATCAA+CGG | 0.558595 | 5:+10963072 | None:intergenic |
| TGGAGACAGTTGATACAACT+TGG | 0.572318 | 5:+10960968 | None:intergenic |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5:+10963146 | None:intergenic |
| TGCGTATCTTCAAGAAATTG+CGG | 0.593654 | 5:-10960600 | MsG0580024862.01.T01:CDS |
| GAGCAAAGAGTTATCCTAGT+GGG | 0.595319 | 5:-10963039 | MsG0580024862.01.T01:intron |
| TCACTTTGACATCATTAGCA+GGG | 0.601541 | 5:+10960672 | None:intergenic |
| AAGAAGCTTAGATCAGGAGA+AGG | 0.607709 | 5:+10962930 | None:intergenic |
| CGTATCTTCAAGAAATTGCG+GGG | 0.611463 | 5:-10960598 | MsG0580024862.01.T01:CDS |
| CTTCTTGACTCTTCTCCAAG+AGG | 0.614857 | 5:-10962913 | MsG0580024862.01.T01:intron |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5:-10963157 | MsG0580024862.01.T01:CDS |
| CCCCTAAGCTATGACCCACT+AGG | 0.617341 | 5:+10963025 | None:intergenic |
| GTATCAACTGTCTCCACCTG+AGG | 0.617568 | 5:-10960961 | MsG0580024862.01.T01:intron |
| GGATACAAGACATTTCGTGT+TGG | 0.618681 | 5:-10963247 | MsG0580024862.01.T01:CDS |
| GTACCATCACTCAAGAACTT+CGG | 0.620500 | 5:-10960514 | MsG0580024862.01.T01:three_prime_UTR |
| GAACTGTGGTCCAAATAACA+TGG | 0.625548 | 5:+10960998 | None:intergenic |
| ATTAGCCAGCATACCTCAGG+TGG | 0.628093 | 5:+10960948 | None:intergenic |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5:+10963211 | None:intergenic |
| GATTGTTGATGCTGATCACA+TGG | 0.672431 | 5:-10960651 | MsG0580024862.01.T01:CDS |
| CCTTATTAAAGACATTGCAA+GGG | 0.676815 | 5:+10960841 | None:intergenic |
| AACTTGGTTGCTAAGAACTG+TGG | 0.677365 | 5:+10960984 | None:intergenic |
| GGTTCATGGAGCTTGCCATG+GGG | 0.706151 | 5:-10963226 | MsG0580024862.01.T01:CDS |
| GTATCTTCAAGAAATTGCGG+GGG | 0.724507 | 5:-10960597 | MsG0580024862.01.T01:CDS |
| AGAGCAAAGAGTTATCCTAG+TGG | 0.738096 | 5:-10963040 | MsG0580024862.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGATCATAATTATAAT+AGG | - | Chr5:10961260-10961279 | MsG0580024862.01.T01:intron | 10.0% |
| !!! | AAATCTATTTTATATGAATA+TGG | + | Chr5:10961854-10961873 | None:intergenic | 10.0% |
| !!! | ATAGTTTTGATTTTAAAATT+AGG | + | Chr5:10962436-10962455 | None:intergenic | 10.0% |
| !!! | TAGTTTTGATTTTAAAATTA+GGG | + | Chr5:10962435-10962454 | None:intergenic | 10.0% |
| !! | CTAAAATACAATAAAGATTA+TGG | - | Chr5:10961006-10961025 | MsG0580024862.01.T01:CDS | 15.0% |
| !! | CTTTCCTTAAATTATTATAA+GGG | - | Chr5:10962346-10962365 | MsG0580024862.01.T01:intron | 15.0% |
| !! | TAATTGATGAAGAAAAAAAA+TGG | + | Chr5:10962524-10962543 | None:intergenic | 15.0% |
| !! | TTAACCCTTATAATAATTTA+AGG | + | Chr5:10962353-10962372 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTAAAATTAG+GGG | + | Chr5:10962434-10962453 | None:intergenic | 15.0% |
| !!! | TGGTTACTTAATTTTTTTAT+AGG | + | Chr5:10962504-10962523 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAAGATAAAGAG+TGG | - | Chr5:10962316-10962335 | MsG0580024862.01.T01:intron | 15.0% |
| !! | AACACTTATTTAATCCTTAA+AGG | - | Chr5:10961808-10961827 | MsG0580024862.01.T01:intron | 20.0% |
| !! | AACGAGTAAAAATAAAAAGA+TGG | - | Chr5:10961532-10961551 | MsG0580024862.01.T01:intron | 20.0% |
| !! | AAGTAATAAACATACCTTTA+AGG | + | Chr5:10961825-10961844 | None:intergenic | 20.0% |
| !! | ATACAATAAAGATTATGGAT+AGG | - | Chr5:10961011-10961030 | MsG0580024862.01.T01:CDS | 20.0% |
| !! | CCTTATAATAATTTAAGGAA+AGG | + | Chr5:10962348-10962367 | None:intergenic | 20.0% |
| !! | CCTTTCCTTAAATTATTATA+AGG | - | Chr5:10962345-10962364 | MsG0580024862.01.T01:intron | 20.0% |
| !! | TAAAAAGATGGTATGTTTAT+AGG | - | Chr5:10961544-10961563 | MsG0580024862.01.T01:intron | 20.0% |
| !! | TCAATATGCTTAAATTCTTT+GGG | - | Chr5:10962730-10962749 | MsG0580024862.01.T01:intron | 20.0% |
| !! | TTCAATATGCTTAAATTCTT+TGG | - | Chr5:10962729-10962748 | MsG0580024862.01.T01:intron | 20.0% |
| !!! | CATATATCACATTCTTTTTT+TGG | + | Chr5:10961290-10961309 | None:intergenic | 20.0% |
| !!! | TCTTTATTGTATTTTAGCTA+AGG | + | Chr5:10961003-10961022 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTTCATGTGTT+TGG | + | Chr5:10962388-10962407 | None:intergenic | 20.0% |
| ! | AACAGAAATCAAATTTGGAA+AGG | - | Chr5:10962462-10962481 | MsG0580024862.01.T01:intron | 25.0% |
| ! | AACCAAAGATTGTATACTTA+CGG | + | Chr5:10961419-10961438 | None:intergenic | 25.0% |
| ! | AATCGAAATATGATATGTTG+AGG | - | Chr5:10961123-10961142 | MsG0580024862.01.T01:intron | 25.0% |
| ! | ACTAATAAACAAATAGGAGT+GGG | - | Chr5:10962158-10962177 | MsG0580024862.01.T01:intron | 25.0% |
| ! | ACTATATCATAAACCTCTAT+CGG | + | Chr5:10961052-10961071 | None:intergenic | 25.0% |
| ! | AGACTATCCTTATTATTGAT+TGG | + | Chr5:10963211-10963230 | None:intergenic | 25.0% |
| ! | AGTTTCAAAAATAATCTAGC+TGG | - | Chr5:10960922-10960941 | MsG0580024862.01.T01:intron | 25.0% |
| ! | GAAGAAACAGAAATCAAATT+TGG | - | Chr5:10962457-10962476 | MsG0580024862.01.T01:intron | 25.0% |
| ! | GATCTTAGAAATTCAATCAA+CGG | + | Chr5:10960579-10960598 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATAATCTAGCT+GGG | - | Chr5:10960923-10960942 | MsG0580024862.01.T01:intron | 25.0% |
| ! | TCAATACCCAATCAATAATA+AGG | - | Chr5:10963201-10963220 | MsG0580024862.01.T01:CDS | 25.0% |
| ! | TGATGATAGCTATGAAATAT+GGG | + | Chr5:10960789-10960808 | None:intergenic | 25.0% |
| ! | TTAATGCTTATATATGAACC+AGG | - | Chr5:10962778-10962797 | MsG0580024862.01.T01:intron | 25.0% |
| ! | TTCATAGCTATCATCAAATT+GGG | - | Chr5:10960793-10960812 | MsG0580024862.01.T01:CDS | 25.0% |
| ! | TTTCATAGCTATCATCAAAT+TGG | - | Chr5:10960792-10960811 | MsG0580024862.01.T01:CDS | 25.0% |
| !! | AACCATTTGGTTTATCATTA+GGG | + | Chr5:10962630-10962649 | None:intergenic | 25.0% |
| !! | GACTATCCTTATTATTGATT+GGG | + | Chr5:10963210-10963229 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | + | Chr5:10961627-10961646 | None:intergenic | 25.0% |
| !! | TTGATGATAGCTATGAAATA+TGG | + | Chr5:10960790-10960809 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | + | Chr5:10961628-10961647 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGAAATAATCCA+TGG | + | Chr5:10960666-10960685 | None:intergenic | 25.0% |
| !!! | ATTGATTGGGTATTGAAAAA+GGG | + | Chr5:10963197-10963216 | None:intergenic | 25.0% |
| !!! | CTTGAAAGTTTTTTTGTGAA+GGG | + | Chr5:10961950-10961969 | None:intergenic | 25.0% |
| !!! | TATTGATTGGGTATTGAAAA+AGG | + | Chr5:10963198-10963217 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGTTTTTTTGTGA+AGG | + | Chr5:10961951-10961970 | None:intergenic | 25.0% |
| AAAAAAGTCAATTGTAGCTC+CGG | + | Chr5:10962266-10962285 | None:intergenic | 30.0% | |
| ACAGAGAACAAATCTTTCAT+TGG | - | Chr5:10962001-10962020 | MsG0580024862.01.T01:intron | 30.0% | |
| AGCAATAATTTAGTACCTCT+TGG | + | Chr5:10960753-10960772 | None:intergenic | 30.0% | |
| ATTGCAGTATCAACAAAGAT+TGG | - | Chr5:10962567-10962586 | MsG0580024862.01.T01:intron | 30.0% | |
| CACTAATAAACAAATAGGAG+TGG | - | Chr5:10962157-10962176 | MsG0580024862.01.T01:intron | 30.0% | |
| CATAATAACGTATGCATATG+TGG | - | Chr5:10960869-10960888 | MsG0580024862.01.T01:intron | 30.0% | |
| CCTTATTAAAGACATTGCAA+GGG | + | Chr5:10962810-10962829 | None:intergenic | 30.0% | |
| GAGCTAAAAATTTAACTGCA+TGG | - | Chr5:10961566-10961585 | MsG0580024862.01.T01:intron | 30.0% | |
| GCGATCACTAATAAACAAAT+AGG | - | Chr5:10962152-10962171 | MsG0580024862.01.T01:intron | 30.0% | |
| TTTGCTGATCAAGAACTATT+AGG | - | Chr5:10962842-10962861 | MsG0580024862.01.T01:intron | 30.0% | |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | - | Chr5:10961640-10961659 | MsG0580024862.01.T01:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+AGG | + | Chr5:10962631-10962650 | None:intergenic | 30.0% |
| ! | TATGATCTTTTACCATCAAG+AGG | + | Chr5:10961252-10961271 | None:intergenic | 30.0% |
| ! | TTTTTCATGTGTTTGGACTT+TGG | + | Chr5:10962381-10962400 | None:intergenic | 30.0% |
| ! | TTTTTGACACAACCAGAATT+AGG | - | Chr5:10962032-10962051 | MsG0580024862.01.T01:intron | 30.0% |
| !!! | AGGTTTTTAAAGCCTAATTC+TGG | + | Chr5:10962047-10962066 | None:intergenic | 30.0% |
| !!! | ATGTTTTAACACTGTCTTGT+TGG | + | Chr5:10962927-10962946 | None:intergenic | 30.0% |
| AAGCATGATGCATACATATG+TGG | - | Chr5:10960821-10960840 | MsG0580024862.01.T01:CDS | 35.0% | |
| AGATACGCAAAAAGCTCTTT+CGG | + | Chr5:10963037-10963056 | None:intergenic | 35.0% | |
| AGCCCTAATGATAAACCAAA+TGG | - | Chr5:10962625-10962644 | MsG0580024862.01.T01:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | Chr5:10962980-10962999 | None:intergenic | 35.0% | |
| ATTAGATCAAGAGAGACTAC+CGG | - | Chr5:10962244-10962263 | MsG0580024862.01.T01:intron | 35.0% | |
| CATGAGACTAATTCTCGAAT+CGG | + | Chr5:10961190-10961209 | None:intergenic | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | Chr5:10962643-10962662 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | Chr5:10962640-10962659 | MsG0580024862.01.T01:intron | 35.0% | |
| CCCTTGCAATGTCTTTAATA+AGG | - | Chr5:10962807-10962826 | MsG0580024862.01.T01:intron | 35.0% | |
| CTCCGTAAGTATACAATCTT+TGG | - | Chr5:10961414-10961433 | MsG0580024862.01.T01:intron | 35.0% | |
| GTAAGCTATATGAATACCCT+GGG | - | Chr5:10961223-10961242 | MsG0580024862.01.T01:intron | 35.0% | |
| GTACTAGTAAGTTTCAAGAC+TGG | + | Chr5:10962100-10962119 | None:intergenic | 35.0% | |
| TAAGTTTCAAGACTGGAGTT+GGG | + | Chr5:10962093-10962112 | None:intergenic | 35.0% | |
| TATCATAAACCTCTATCGGT+CGG | + | Chr5:10961048-10961067 | None:intergenic | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | Chr5:10962979-10962998 | None:intergenic | 35.0% | |
| TGCGTATCTTCAAGAAATTG+CGG | - | Chr5:10963048-10963067 | MsG0580024862.01.T01:CDS | 35.0% | |
| ! | ATTCTGACCTGATTTGAAGT+TGG | + | Chr5:10961080-10961099 | None:intergenic | 35.0% |
| ! | CATGTGAAAGCTTTAATAGC+TGG | - | Chr5:10961639-10961658 | MsG0580024862.01.T01:intron | 35.0% |
| ! | GCCTTATTAAAGACATTGCA+AGG | + | Chr5:10962811-10962830 | None:intergenic | 35.0% |
| ! | TTCGAGAATTAGTCTCATGA+CGG | - | Chr5:10961191-10961210 | MsG0580024862.01.T01:intron | 35.0% |
| AACTTGGTTGCTAAGAACTG+TGG | + | Chr5:10962667-10962686 | None:intergenic | 40.0% | |
| AAGAAGCTTAGATCAGGAGA+AGG | + | Chr5:10960721-10960740 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | - | Chr5:10962579-10962598 | MsG0580024862.01.T01:intron | 40.0% | |
| AGAGCAAAGAGTTATCCTAG+TGG | - | Chr5:10960608-10960627 | MsG0580024862.01.T01:CDS | 40.0% | |
| AGAGTCAAGAAGCTTAGATC+AGG | + | Chr5:10960727-10960746 | None:intergenic | 40.0% | |
| AGGATAACTCTTTGCTCTTG+TGG | + | Chr5:10960606-10960625 | None:intergenic | 40.0% | |
| ATTGCTCTGTTGAAATCTGC+TGG | - | Chr5:10960465-10960484 | MsG0580024862.01.T01:three_prime_UTR | 40.0% | |
| CATAATCTTTGTGTCCAAGC+TGG | + | Chr5:10962596-10962615 | None:intergenic | 40.0% | |
| CGTATCTTCAAGAAATTGCG+GGG | - | Chr5:10963050-10963069 | MsG0580024862.01.T01:CDS | 40.0% | |
| GAACTGTGGTCCAAATAACA+TGG | + | Chr5:10962653-10962672 | None:intergenic | 40.0% | |
| GAGCAAAGAGTTATCCTAGT+GGG | - | Chr5:10960609-10960628 | MsG0580024862.01.T01:CDS | 40.0% | |
| GATTGTTGATGCTGATCACA+TGG | - | Chr5:10962997-10963016 | MsG0580024862.01.T01:intron | 40.0% | |
| GCGTATCTTCAAGAAATTGC+GGG | - | Chr5:10963049-10963068 | MsG0580024862.01.T01:CDS | 40.0% | |
| GGAATAGGCTGTAGAGAATT+AGG | + | Chr5:10962067-10962086 | None:intergenic | 40.0% | |
| GGATACAAGACATTTCGTGT+TGG | - | Chr5:10960401-10960420 | MsG0580024862.01.T01:three_prime_UTR | 40.0% | |
| GGTAAGCTATATGAATACCC+TGG | - | Chr5:10961222-10961241 | MsG0580024862.01.T01:intron | 40.0% | |
| GTAAGTTTCAAGACTGGAGT+TGG | + | Chr5:10962094-10962113 | None:intergenic | 40.0% | |
| GTACCATCACTCAAGAACTT+CGG | - | Chr5:10963134-10963153 | MsG0580024862.01.T01:CDS | 40.0% | |
| GTATCTTCAAGAAATTGCGG+GGG | - | Chr5:10963051-10963070 | MsG0580024862.01.T01:CDS | 40.0% | |
| GTCTATGCCAACTTCAAATC+AGG | - | Chr5:10961070-10961089 | MsG0580024862.01.T01:CDS | 40.0% | |
| TTACCGAAGTTCTTGAGTGA+TGG | + | Chr5:10963140-10963159 | None:intergenic | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | Chr5:10960679-10960698 | None:intergenic | 40.0% |
| ! | TGGAGACAGTTGATACAACT+TGG | + | Chr5:10962683-10962702 | None:intergenic | 40.0% |
| !! | AGACATTTCGTGTTGGTTCA+TGG | - | Chr5:10960408-10960427 | MsG0580024862.01.T01:three_prime_UTR | 40.0% |
| !! | AGTCTCATGACGGATACAAA+GGG | - | Chr5:10961201-10961220 | MsG0580024862.01.T01:intron | 40.0% |
| !! | TAGTCTCATGACGGATACAA+AGG | - | Chr5:10961200-10961219 | MsG0580024862.01.T01:intron | 40.0% |
| CGCAAAAAGCTCTTTCGGTT+TGG | + | Chr5:10963032-10963051 | None:intergenic | 45.0% | |
| CTTCTTGACTCTTCTCCAAG+AGG | - | Chr5:10960735-10960754 | MsG0580024862.01.T01:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | Chr5:10960646-10960665 | MsG0580024862.01.T01:CDS | 45.0% | |
| TAAACCTCTATCGGTCGGTT+TGG | + | Chr5:10961043-10961062 | None:intergenic | 45.0% | |
| TAGGGGGATGTGTATATCTG+TGG | - | Chr5:10960640-10960659 | MsG0580024862.01.T01:CDS | 45.0% | |
| TGATCAGCAAAGCTACGAAC+AGG | + | Chr5:10962833-10962852 | None:intergenic | 45.0% | |
| TTAACCAAACCGACCGATAG+AGG | - | Chr5:10961036-10961055 | MsG0580024862.01.T01:CDS | 45.0% | |
| TTCAAGACTGGAGTTGGGTT+GGG | + | Chr5:10962088-10962107 | None:intergenic | 45.0% | |
| TTTCAAGACTGGAGTTGGGT+TGG | + | Chr5:10962089-10962108 | None:intergenic | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | Chr5:10960621-10960640 | MsG0580024862.01.T01:CDS | 45.0% |
| ! | TCCTAGTGGGTCATAGCTTA+GGG | - | Chr5:10960622-10960641 | MsG0580024862.01.T01:CDS | 45.0% |
| ! | TTGATTAGCCAGCATACCTC+AGG | + | Chr5:10962706-10962725 | None:intergenic | 45.0% |
| !! | CTCTTTCGGTTTGGAGAACA+TGG | + | Chr5:10963023-10963042 | None:intergenic | 45.0% |
| !!! | AAAATATTTTTTATCAAATT+TGG | - | Chr5:10961478-10961497 | MsG0580024862.01.T01:intron | 5.0% |
| !!! | AAATTTGATAAAAAATATTT+TGG | + | Chr5:10961479-10961498 | None:intergenic | 5.0% |
| ACATTGCAAGGGACAAGTCC+TGG | + | Chr5:10962799-10962818 | None:intergenic | 50.0% | |
| ATTAGCCAGCATACCTCAGG+TGG | + | Chr5:10962703-10962722 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | - | Chr5:10960491-10960510 | MsG0580024862.01.T01:three_prime_UTR | 50.0% | |
| GTATCAACTGTCTCCACCTG+AGG | - | Chr5:10962687-10962706 | MsG0580024862.01.T01:intron | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | Chr5:10960530-10960549 | MsG0580024862.01.T01:three_prime_UTR | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | + | Chr5:10960505-10960524 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | Chr5:10960534-10960553 | None:intergenic | 50.0% | |
| TGGTTCATGGAGCTTGCCAT+GGG | - | Chr5:10960421-10960440 | MsG0580024862.01.T01:three_prime_UTR | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | + | Chr5:10960506-10960525 | None:intergenic | 50.0% | |
| TTGGTTCATGGAGCTTGCCA+TGG | - | Chr5:10960420-10960439 | MsG0580024862.01.T01:three_prime_UTR | 50.0% | |
| ! | CCTAGTGGGTCATAGCTTAG+GGG | - | Chr5:10960623-10960642 | MsG0580024862.01.T01:CDS | 50.0% |
| ! | CTAGTGGGTCATAGCTTAGG+GGG | - | Chr5:10960624-10960643 | MsG0580024862.01.T01:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | Chr5:10960530-10960549 | None:intergenic | 50.0% |
| !! | ACTGGAGTTGGGTTGGGAAT+AGG | + | Chr5:10962082-10962101 | None:intergenic | 50.0% |
| !! | TACCATCAAGAGGTGTCCCA+GGG | + | Chr5:10961242-10961261 | None:intergenic | 50.0% |
| !! | TTACCATCAAGAGGTGTCCC+AGG | + | Chr5:10961243-10961262 | None:intergenic | 50.0% |
| ACCCTAGACATGGCTGCTTC+TGG | - | Chr5:10960501-10960520 | MsG0580024862.01.T01:three_prime_UTR | 55.0% | |
| CCCCTAAGCTATGACCCACT+AGG | + | Chr5:10960626-10960645 | None:intergenic | 55.0% | |
| GGTTCATGGAGCTTGCCATG+GGG | - | Chr5:10960422-10960441 | MsG0580024862.01.T01:three_prime_UTR | 55.0% | |
| TACCCTGGGACACCTCTTGA+TGG | - | Chr5:10961237-10961256 | MsG0580024862.01.T01:intron | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | Chr5:10960440-10960459 | None:intergenic | 55.0% | |
| TGTCTCCACCTGAGGTATGC+TGG | - | Chr5:10962695-10962714 | MsG0580024862.01.T01:intron | 55.0% | |
| ATGGAGCTTGCCATGGGGCA+TGG | - | Chr5:10960427-10960446 | MsG0580024862.01.T01:three_prime_UTR | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | Chr5:10960433-10960452 | MsG0580024862.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 10960399 | 10963271 | 10960399 | ID=MsG0580024862.01;Name=MsG0580024862.01 |
| Chr5 | mRNA | 10960399 | 10963271 | 10960399 | ID=MsG0580024862.01.T01;Parent=MsG0580024862.01;Name=MsG0580024862.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.5|1|1|1|4|157|242 |
| Chr5 | exon | 10960399 | 10960870 | 10960399 | ID=MsG0580024862.01.T01:exon:26627;Parent=MsG0580024862.01.T01 |
| Chr5 | exon | 10960962 | 10961096 | 10960962 | ID=MsG0580024862.01.T01:exon:26626;Parent=MsG0580024862.01.T01 |
| Chr5 | exon | 10962914 | 10962960 | 10962914 | ID=MsG0580024862.01.T01:exon:26625;Parent=MsG0580024862.01.T01 |
| Chr5 | exon | 10963040 | 10963271 | 10963040 | ID=MsG0580024862.01.T01:exon:26624;Parent=MsG0580024862.01.T01 |
| Chr5 | CDS | 10963040 | 10963271 | 10963040 | ID=MsG0580024862.01.T01:cds;Parent=MsG0580024862.01.T01 |
| Chr5 | CDS | 10962914 | 10962960 | 10962914 | ID=MsG0580024862.01.T01:cds;Parent=MsG0580024862.01.T01 |
| Chr5 | CDS | 10960962 | 10961096 | 10960962 | ID=MsG0580024862.01.T01:cds;Parent=MsG0580024862.01.T01 |
| Chr5 | CDS | 10960556 | 10960870 | 10960556 | ID=MsG0580024862.01.T01:cds;Parent=MsG0580024862.01.T01 |
| Chr5 | three_prime_UTR | 10960399 | 10960555 | 10960399 | ID=MsG0580024862.01.T01:three_prime_utr;Parent=MsG0580024862.01.T01 |
| Gene Sequence |
| Protein sequence |
