AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017044.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017044.01.T01 MTR_3g099850 94.025 318 18 1 34 351 1 317 0.0 600
MsG0380017044.01.T01 MTR_4g087270 31.193 109 74 1 49 156 224 332 1.79e-11 66.2
MsG0380017044.01.T01 MTR_4g087270 31.193 109 74 1 49 156 224 332 1.82e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017044.01.T01 AT1G07840 50.323 310 134 9 49 352 15 310 2.28e-90 275
MsG0380017044.01.T01 AT1G07840 50.323 310 134 9 49 352 15 310 2.28e-90 275
MsG0380017044.01.T01 AT1G07840 51.481 270 120 5 49 314 15 277 1.27e-84 259
MsG0380017044.01.T01 AT2G43650 37.634 93 57 1 51 142 236 328 6.81e-14 73.6

Find 63 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAATGTCACCTCTTC+AGG 0.247159 3:+91117889 None:intergenic
CTAACAAGCATGTCAGGATT+TGG 0.286704 3:+91118200 None:intergenic
GAAATTTGCCCCTACATCTA+TGG 0.323324 3:-91118028 MsG0380017044.01.T01:CDS
GGCAATAATTCAAAAGCAAC+AGG 0.349509 3:+91118540 None:intergenic
AGAAAAGGTGGCAGAAGAAA+TGG 0.358244 3:-91117455 MsG0380017044.01.T01:CDS
GAATAAGTATATTAGCAAAA+TGG 0.361698 3:-91117762 MsG0380017044.01.T01:CDS
AATAATTTCAAAGTATCAAA+AGG 0.394981 3:+91117407 None:intergenic
GCAAGTAATAAACAAGGAAT+TGG 0.402154 3:+91118519 None:intergenic
CATTCATTTCAGTTCAACTT+TGG 0.427582 3:-91117337 MsG0380017044.01.T01:CDS
GTTGAATTCTGACAAAATCA+TGG 0.431107 3:-91118855 MsG0380017044.01.T01:CDS
TGCCCCTACATCTATGGATC+TGG 0.431885 3:-91118022 MsG0380017044.01.T01:CDS
ATAGATGTAGGGGCAAATTT+CGG 0.432254 3:+91118030 None:intergenic
TACATGAAGAAAGCAACAAA+TGG 0.436883 3:-91117665 MsG0380017044.01.T01:CDS
CAGGTCAATGGTGAATGATA+TGG 0.438432 3:-91117920 MsG0380017044.01.T01:CDS
TTACTTGCTGCGAAAGGCTA+AGG 0.442757 3:-91118504 MsG0380017044.01.T01:CDS
ACTTTGCTAACAAGCATGTC+AGG 0.446928 3:+91118194 None:intergenic
TCGTTATTGAAATGATTCTC+AGG 0.452123 3:+91118827 None:intergenic
TCATTTCAGTTCAACTTTGG+TGG 0.459718 3:-91117334 MsG0380017044.01.T01:CDS
CTCTCCAGTGTCATCTTCAA+AGG 0.469439 3:+91117493 None:intergenic
TATTAGCAAAATGGAGGATC+GGG 0.471917 3:-91117753 MsG0380017044.01.T01:CDS
TCTACAATACTTCGAACAAC+AGG 0.475558 3:+91118461 None:intergenic
TCAGAATTTCTCTGTCTCTC+CGG 0.476264 3:+91117968 None:intergenic
AGGAGAAGGATATCATAAGA+AGG 0.479790 3:+91119423 None:intergenic
GACACTGGAGAGATAACAAC+GGG 0.484955 3:-91117482 MsG0380017044.01.T01:CDS
TTTCCAGATCCATAGATGTA+GGG 0.489684 3:+91118019 None:intergenic
AATTTCTCTGTCTCTCCGGC+TGG 0.496673 3:+91117972 None:intergenic
AAACAAGCCGAGAAAACATA+TGG 0.500480 3:-91119396 MsG0380017044.01.T01:intron
TGCATTGTTGAAAGAAATGA+AGG 0.500645 3:-91118663 MsG0380017044.01.T01:CDS
AATCAAGATTCTACAGCAGA+TGG 0.504788 3:-91118587 MsG0380017044.01.T01:CDS
GCAAAATGGAGGATCGGGCT+AGG 0.510188 3:-91117748 MsG0380017044.01.T01:CDS
GGAGAAGGATATCATAAGAA+GGG 0.514964 3:+91119424 None:intergenic
ACATGAAGAAAGCAACAAAT+GGG 0.521633 3:-91117664 MsG0380017044.01.T01:intron
TCTCCAGTGTCATCTTCAAA+GGG 0.524270 3:+91117494 None:intergenic
AATTCAAACTTTAACTGCCA+AGG 0.524397 3:-91118615 MsG0380017044.01.T01:CDS
GAAAAGGTGGCAGAAGAAAT+GGG 0.535559 3:-91117454 MsG0380017044.01.T01:CDS
TTCCAGATCCATAGATGTAG+GGG 0.548710 3:+91118020 None:intergenic
TGTTTATTACTTGCTGCGAA+AGG 0.549122 3:-91118510 MsG0380017044.01.T01:CDS
ATAACAACGGGATCCAGAAA+AGG 0.549390 3:-91117470 MsG0380017044.01.T01:CDS
ATATTAGCAAAATGGAGGAT+CGG 0.562884 3:-91117754 MsG0380017044.01.T01:CDS
ATAATTTCAAAGTATCAAAA+GGG 0.563056 3:+91117408 None:intergenic
TTCCTCTCTTCTCTAGTGAG+AGG 0.563874 3:+91117698 None:intergenic
TACTTGCTGCGAAAGGCTAA+GGG 0.569441 3:-91118503 MsG0380017044.01.T01:CDS
GGATCGGGCTAGGCAAGAGG+AGG 0.576064 3:-91117738 MsG0380017044.01.T01:CDS
GAAAGTGCAACAAGTGATGC+TGG 0.580076 3:-91118275 MsG0380017044.01.T01:CDS
AATAAACTGACCTCAGCAGT+TGG 0.584967 3:+91118167 None:intergenic
GGAGGATCGGGCTAGGCAAG+AGG 0.594916 3:-91117741 MsG0380017044.01.T01:CDS
AGCAGGAAAGAAATGCCAGC+CGG 0.599418 3:-91117987 MsG0380017044.01.T01:CDS
CTATAGGATGGTGATGGTGA+TGG 0.606500 3:-91118072 MsG0380017044.01.T01:intron
AACAAGTGATGCTGGTGAGA+AGG 0.606555 3:-91118267 MsG0380017044.01.T01:CDS
CTTCTCTAGTGAGAGGAACA+CGG 0.610902 3:+91117705 None:intergenic
TTACCCTTTGAAGATGACAC+TGG 0.611575 3:-91117497 MsG0380017044.01.T01:CDS
TAAGTATATTAGCAAAATGG+AGG 0.616444 3:-91117759 MsG0380017044.01.T01:CDS
TAGGGGCAAATTTCGGAGGA+CGG 0.617034 3:+91118037 None:intergenic
TATGGAAGACAGACCTGAAG+AGG 0.625549 3:-91117902 MsG0380017044.01.T01:intron
TGGGAAGTTGAAGAAGCGAA+AGG 0.631938 3:-91117435 MsG0380017044.01.T01:CDS
ACAACGGGATCCAGAAAAGG+TGG 0.643347 3:-91117467 MsG0380017044.01.T01:CDS
TTGTTGAAAGAAATGAAGGA+AGG 0.648804 3:-91118659 MsG0380017044.01.T01:CDS
TTCCTCTCACTAGAGAAGAG+AGG 0.650937 3:-91117700 MsG0380017044.01.T01:CDS
CAAAGTAGAACCAACTGCTG+AGG 0.659817 3:-91118177 MsG0380017044.01.T01:intron
GATGTAGGGGCAAATTTCGG+AGG 0.659828 3:+91118033 None:intergenic
TTTATGCTATAGGATGGTGA+TGG 0.673940 3:-91118078 MsG0380017044.01.T01:intron
TTCGCAGCAAGTAATAAACA+AGG 0.678771 3:+91118513 None:intergenic
TGACACTGGAGAGATAACAA+CGG 0.690971 3:-91117483 MsG0380017044.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTTTTTTTTTTTGA+AGG + Chr3:91117578-91117597 None:intergenic 10.0%
!!! AATTAGAGTTTTATTATATT+AGG - Chr3:91118037-91118056 MsG0380017044.01.T01:CDS 10.0%
!!! TGACATTATTATTTTATTTT+TGG - Chr3:91118892-91118911 MsG0380017044.01.T01:intron 10.0%
!!! TTAGGTTTTAATTTTTTTTA+CGG + Chr3:91117645-91117664 None:intergenic 10.0%
!! GAAAACAAACAATTAAAAAA+TGG + Chr3:91119185-91119204 None:intergenic 15.0%
!!! AATAATTTCAAAGTATCAAA+AGG + Chr3:91119367-91119386 None:intergenic 15.0%
!!! ACTTAAATGATTTTATGTAA+TGG - Chr3:91118929-91118948 MsG0380017044.01.T01:intron 15.0%
!!! ATAATTTCAAAGTATCAAAA+GGG + Chr3:91119366-91119385 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTGAAGGA+AGG + Chr3:91117574-91117593 None:intergenic 15.0%
!!! TAGGTTTTAATTTTTTTTAC+GGG + Chr3:91117644-91117663 None:intergenic 15.0%
!!! TTATTATTTTATTTTTGGTG+TGG - Chr3:91118897-91118916 MsG0380017044.01.T01:intron 15.0%
!!! TTTTATAAAAGCAAATTATC+AGG + Chr3:91119144-91119163 None:intergenic 15.0%
!! GAATAAGTATATTAGCAAAA+TGG - Chr3:91119009-91119028 MsG0380017044.01.T01:intron 20.0%
!! TATAACAAAAACATGAAACA+CGG - Chr3:91117523-91117542 MsG0380017044.01.T01:CDS 20.0%
!!! CTTTAATTAGTTTTTGGATT+TGG + Chr3:91118471-91118490 None:intergenic 20.0%
!!! GATACGATTATTTTTAGAAA+AGG - Chr3:91118333-91118352 MsG0380017044.01.T01:CDS 20.0%
!!! TATTGTTGTTTTTTGTCAAT+CGG + Chr3:91118448-91118467 None:intergenic 20.0%
!!! TATTTTATCATTTTGTGCTT+GGG + Chr3:91117487-91117506 None:intergenic 20.0%
! AATAAAAATAAGCGAACACA+CGG + Chr3:91117833-91117852 None:intergenic 25.0%
! CATATGGTTAGATAAAAACA+TGG - Chr3:91117391-91117410 MsG0380017044.01.T01:CDS 25.0%
! TAAGTATATTAGCAAAATGG+AGG - Chr3:91119012-91119031 MsG0380017044.01.T01:intron 25.0%
!! ACACTACATCTTTTAAACAT+TGG - Chr3:91119404-91119423 MsG0380017044.01.T01:CDS 25.0%
!! CTATTCAATTTTTGTTCACT+TGG - Chr3:91117987-91118006 MsG0380017044.01.T01:CDS 25.0%
!! GTATTTTATCATTTTGTGCT+TGG + Chr3:91117488-91117507 None:intergenic 25.0%
!! TATCTAACCATATGTTTTCT+CGG + Chr3:91117385-91117404 None:intergenic 25.0%
!!! CACTAGCTTTAATTAGTTTT+TGG + Chr3:91118477-91118496 None:intergenic 25.0%
!!! GAGAAGTGTTAAAAATAATG+AGG + Chr3:91117874-91117893 None:intergenic 25.0%
!!! TTTTTTTTTGAAGGAAGGTT+TGG + Chr3:91117569-91117588 None:intergenic 25.0%
AATAATAATGTCACCTCTTC+AGG + Chr3:91118885-91118904 None:intergenic 30.0%
AATTCAAACTTTAACTGCCA+AGG - Chr3:91118156-91118175 MsG0380017044.01.T01:intron 30.0%
AATTCGTTTATGCTATAGGA+TGG - Chr3:91118687-91118706 MsG0380017044.01.T01:intron 30.0%
ACATGAAGAAAGCAACAAAT+GGG - Chr3:91119107-91119126 MsG0380017044.01.T01:intron 30.0%
ACCTAATTCGTTTATGCTAT+AGG - Chr3:91118683-91118702 MsG0380017044.01.T01:CDS 30.0%
AGATGAAAGTCATTTCTCAT+TGG + Chr3:91117455-91117474 None:intergenic 30.0%
ATATTAGCAAAATGGAGGAT+CGG - Chr3:91119017-91119036 MsG0380017044.01.T01:intron 30.0%
CATTCATTTCAGTTCAACTT+TGG - Chr3:91119434-91119453 MsG0380017044.01.T01:CDS 30.0%
GCAAGTAATAAACAAGGAAT+TGG + Chr3:91118255-91118274 None:intergenic 30.0%
GTTGAATTCTGACAAAATCA+TGG - Chr3:91117916-91117935 MsG0380017044.01.T01:CDS 30.0%
TACATGAAGAAAGCAACAAA+TGG - Chr3:91119106-91119125 MsG0380017044.01.T01:intron 30.0%
TCCTATAGCATAAACGAATT+AGG + Chr3:91118687-91118706 None:intergenic 30.0%
TCGTTATTGAAATGATTCTC+AGG + Chr3:91117947-91117966 None:intergenic 30.0%
TGCATTGTTGAAAGAAATGA+AGG - Chr3:91118108-91118127 MsG0380017044.01.T01:intron 30.0%
TTGTTGAAAGAAATGAAGGA+AGG - Chr3:91118112-91118131 MsG0380017044.01.T01:intron 30.0%
! AAGTGATTTTATCAGGTCAA+TGG - Chr3:91118839-91118858 MsG0380017044.01.T01:CDS 30.0%
! ACATCTGTTTACTATTTTCC+AGG - Chr3:91119209-91119228 MsG0380017044.01.T01:intron 30.0%
! ACTCAGATAAGAGATTTTGA+GGG - Chr3:91118971-91118990 MsG0380017044.01.T01:intron 30.0%
! AGAATCTTGATTTTTGACCT+TGG + Chr3:91118176-91118195 None:intergenic 30.0%
! ATTCAAAAGCAACAGGTTTT+TGG + Chr3:91118227-91118246 None:intergenic 30.0%
! CTAAGCAAAGTGATTTTATC+AGG - Chr3:91118832-91118851 MsG0380017044.01.T01:CDS 30.0%
! TACTCAGATAAGAGATTTTG+AGG - Chr3:91118970-91118989 MsG0380017044.01.T01:intron 30.0%
! TGAAACATCTTCACTCTTTT+TGG + Chr3:91118542-91118561 None:intergenic 30.0%
!! TAAAACCTAACTTGCTTGAA+CGG - Chr3:91117691-91117710 MsG0380017044.01.T01:CDS 30.0%
!!! TAATTTTTTTTACGGGCTAC+AGG + Chr3:91117637-91117656 None:intergenic 30.0%
AAACAAGCCGAGAAAACATA+TGG - Chr3:91117375-91117394 MsG0380017044.01.T01:CDS 35.0%
AACACACGGTGTTTCAAAAT+AGG + Chr3:91117819-91117838 None:intergenic 35.0%
AAGAAAGCAACAAATGGGTA+CGG - Chr3:91119112-91119131 MsG0380017044.01.T01:intron 35.0%
AATCAAGATTCTACAGCAGA+TGG - Chr3:91118184-91118203 MsG0380017044.01.T01:CDS 35.0%
ACACACGGTGTTTCAAAATA+GGG + Chr3:91117818-91117837 None:intergenic 35.0%
AGGAGAAGGATATCATAAGA+AGG + Chr3:91117351-91117370 None:intergenic 35.0%
ATAGATGTAGGGGCAAATTT+CGG + Chr3:91118744-91118763 None:intergenic 35.0%
CTTGTATGTGTGTGTAAACT+TGG - Chr3:91118367-91118386 MsG0380017044.01.T01:intron 35.0%
GGAGAAGGATATCATAAGAA+GGG + Chr3:91117350-91117369 None:intergenic 35.0%
GGCAATAATTCAAAAGCAAC+AGG + Chr3:91118234-91118253 None:intergenic 35.0%
GGTGTTTCAAAATAGGGTAA+GGG + Chr3:91117812-91117831 None:intergenic 35.0%
TATTAGCAAAATGGAGGATC+GGG - Chr3:91119018-91119037 MsG0380017044.01.T01:intron 35.0%
TCAAGTGCAAATTTGTGATG+TGG - Chr3:91118635-91118654 MsG0380017044.01.T01:CDS 35.0%
TCATTTCAGTTCAACTTTGG+TGG - Chr3:91119437-91119456 MsG0380017044.01.T01:CDS 35.0%
TCTACAATACTTCGAACAAC+AGG + Chr3:91118313-91118332 None:intergenic 35.0%
TCTGGAAAAATCTTCAAAGC+AGG - Chr3:91118767-91118786 MsG0380017044.01.T01:intron 35.0%
TTCGCAGCAAGTAATAAACA+AGG + Chr3:91118261-91118280 None:intergenic 35.0%
TTTATGCTATAGGATGGTGA+TGG - Chr3:91118693-91118712 MsG0380017044.01.T01:intron 35.0%
TTTCCAGATCCATAGATGTA+GGG + Chr3:91118755-91118774 None:intergenic 35.0%
! ATTTTGTGCTTGGGTGAAAA+GGG + Chr3:91117478-91117497 None:intergenic 35.0%
! TGTTTATTACTTGCTGCGAA+AGG - Chr3:91118261-91118280 MsG0380017044.01.T01:CDS 35.0%
! TTACTATTTTCCAGGATGCA+AGG - Chr3:91119217-91119236 MsG0380017044.01.T01:intron 35.0%
! TTTTCCAGATCCATAGATGT+AGG + Chr3:91118756-91118775 None:intergenic 35.0%
!! TTTTAGTTGTTGTCTTGTCG+GGG + Chr3:91117676-91117695 None:intergenic 35.0%
!! TTTTTGGTGAGATGGGTTTT+AGG + Chr3:91117611-91117630 None:intergenic 35.0%
!!! GGTTTTAGTTGTTGTCTTGT+CGG + Chr3:91117678-91117697 None:intergenic 35.0%
!!! GTTTTAGTTGTTGTCTTGTC+GGG + Chr3:91117677-91117696 None:intergenic 35.0%
!!! TTTTCTCGGCTTGTTTTGAA+AGG + Chr3:91117371-91117390 None:intergenic 35.0%
AACCTAAGAATCGAGAAACG+AGG + Chr3:91117761-91117780 None:intergenic 40.0%
AATAAACTGACCTCAGCAGT+TGG + Chr3:91118607-91118626 None:intergenic 40.0%
ACCTAAGAATCGAGAAACGA+GGG + Chr3:91117760-91117779 None:intergenic 40.0%
ACTTTGCTAACAAGCATGTC+AGG + Chr3:91118580-91118599 None:intergenic 40.0%
AGAAAAGGTGGCAGAAGAAA+TGG - Chr3:91119316-91119335 MsG0380017044.01.T01:intron 40.0%
AGAAAGCAACAAATGGGTAC+GGG - Chr3:91119113-91119132 MsG0380017044.01.T01:intron 40.0%
ATAACAACGGGATCCAGAAA+AGG - Chr3:91119301-91119320 MsG0380017044.01.T01:intron 40.0%
CAGGTCAATGGTGAATGATA+TGG - Chr3:91118851-91118870 MsG0380017044.01.T01:CDS 40.0%
CGGTGTTTCAAAATAGGGTA+AGG + Chr3:91117813-91117832 None:intergenic 40.0%
CTAACAAGCATGTCAGGATT+TGG + Chr3:91118574-91118593 None:intergenic 40.0%
GAAAAGGTGGCAGAAGAAAT+GGG - Chr3:91119317-91119336 MsG0380017044.01.T01:intron 40.0%
GAAATTTGCCCCTACATCTA+TGG - Chr3:91118743-91118762 MsG0380017044.01.T01:intron 40.0%
TCAGAATTTCTCTGTCTCTC+CGG + Chr3:91118806-91118825 None:intergenic 40.0%
TCATTTCTCATTGGCATGTC+AGG + Chr3:91117446-91117465 None:intergenic 40.0%
TCTCCAGTGTCATCTTCAAA+GGG + Chr3:91119280-91119299 None:intergenic 40.0%
TGACACTGGAGAGATAACAA+CGG - Chr3:91119288-91119307 MsG0380017044.01.T01:intron 40.0%
TTCCAGATCCATAGATGTAG+GGG + Chr3:91118754-91118773 None:intergenic 40.0%
! ATTTCTTCTGCCACCTTTTC+TGG + Chr3:91119317-91119336 None:intergenic 40.0%
! CATTTTGTGCTTGGGTGAAA+AGG + Chr3:91117479-91117498 None:intergenic 40.0%
! TTACCCTTTGAAGATGACAC+TGG - Chr3:91119274-91119293 MsG0380017044.01.T01:intron 40.0%
!!! ACAGGCTTTTTTTGGTGAGA+TGG + Chr3:91117619-91117638 None:intergenic 40.0%
!!! CAGGCTTTTTTTGGTGAGAT+GGG + Chr3:91117618-91117637 None:intergenic 40.0%
AACAAGTGATGCTGGTGAGA+AGG - Chr3:91118504-91118523 MsG0380017044.01.T01:CDS 45.0%
CAAAGTAGAACCAACTGCTG+AGG - Chr3:91118594-91118613 MsG0380017044.01.T01:CDS 45.0%
CTCTCCAGTGTCATCTTCAA+AGG + Chr3:91119281-91119300 None:intergenic 45.0%
CTCTGTTAAACCTTGCATCC+TGG + Chr3:91119230-91119249 None:intergenic 45.0%
CTTCTCTAGTGAGAGGAACA+CGG + Chr3:91119069-91119088 None:intergenic 45.0%
GAAAGCAACAAATGGGTACG+GGG - Chr3:91119114-91119133 MsG0380017044.01.T01:intron 45.0%
GACACTGGAGAGATAACAAC+GGG - Chr3:91119289-91119308 MsG0380017044.01.T01:intron 45.0%
TAAGAATCGAGAAACGAGGG+CGG + Chr3:91117757-91117776 None:intergenic 45.0%
TATGGAAGACAGACCTGAAG+AGG - Chr3:91118869-91118888 MsG0380017044.01.T01:CDS 45.0%
TGGGAAGTTGAAGAAGCGAA+AGG - Chr3:91119336-91119355 MsG0380017044.01.T01:intron 45.0%
TTCCTCTCACTAGAGAAGAG+AGG - Chr3:91119071-91119090 MsG0380017044.01.T01:intron 45.0%
TTCCTCTCTTCTCTAGTGAG+AGG + Chr3:91119076-91119095 None:intergenic 45.0%
! GAAAGTGCAACAAGTGATGC+TGG - Chr3:91118496-91118515 MsG0380017044.01.T01:CDS 45.0%
! TACTTGCTGCGAAAGGCTAA+GGG - Chr3:91118268-91118287 MsG0380017044.01.T01:CDS 45.0%
! TCACTCTTTTTGGATGCAGC+TGG + Chr3:91118532-91118551 None:intergenic 45.0%
! TTACTTGCTGCGAAAGGCTA+AGG - Chr3:91118267-91118286 MsG0380017044.01.T01:CDS 45.0%
!! CTATAGGATGGTGATGGTGA+TGG - Chr3:91118699-91118718 MsG0380017044.01.T01:intron 45.0%
!!! CGGCTTGTTTTGAAAGGAGA+AGG + Chr3:91117365-91117384 None:intergenic 45.0%
!!! TACGGGCTACAGGCTTTTTT+TGG + Chr3:91117627-91117646 None:intergenic 45.0%
AATTTCTCTGTCTCTCCGGC+TGG + Chr3:91118802-91118821 None:intergenic 50.0%
ACAACGGGATCCAGAAAAGG+TGG - Chr3:91119304-91119323 MsG0380017044.01.T01:intron 50.0%
ACTGGCCGTTCAAGCAAGTT+AGG + Chr3:91117699-91117718 None:intergenic 50.0%
AGCAGGAAAGAAATGCCAGC+CGG - Chr3:91118784-91118803 MsG0380017044.01.T01:intron 50.0%
CTCATTGGCATGTCAGGAAC+AGG + Chr3:91117440-91117459 None:intergenic 50.0%
GATGTAGGGGCAAATTTCGG+AGG + Chr3:91118741-91118760 None:intergenic 50.0%
GCCCTCGTTTCTCGATTCTT+AGG - Chr3:91117756-91117775 MsG0380017044.01.T01:CDS 50.0%
TAGGGGCAAATTTCGGAGGA+CGG + Chr3:91118737-91118756 None:intergenic 50.0%
TAGTTGTTGTCTTGTCGGGG+TGG + Chr3:91117673-91117692 None:intergenic 50.0%
TGCCCCTACATCTATGGATC+TGG - Chr3:91118749-91118768 MsG0380017044.01.T01:intron 50.0%
GCAAAATGGAGGATCGGGCT+AGG - Chr3:91119023-91119042 MsG0380017044.01.T01:intron 55.0%
GCAACAAATGGGTACGGGGA+AGG - Chr3:91119118-91119137 MsG0380017044.01.T01:intron 55.0%
! CTTGTCGGGGTGGAGCTTTT+AGG + Chr3:91117663-91117682 None:intergenic 55.0%
AGGTTGAGCAGGTCGCAGAC+TGG + Chr3:91117717-91117736 None:intergenic 60.0%
!! AGCGGTAGTGGAGGTTGAGC+AGG + Chr3:91117728-91117747 None:intergenic 60.0%
! GGAGGATCGGGCTAGGCAAG+AGG - Chr3:91119030-91119049 MsG0380017044.01.T01:intron 65.0%
! GGATCGGGCTAGGCAAGAGG+AGG - Chr3:91119033-91119052 MsG0380017044.01.T01:intron 65.0%
TCGAGAAACGAGGGCGGCGC+TGG + Chr3:91117751-91117770 None:intergenic 70.0%
! AAACGAGGGCGGCGCTGGAG+CGG + Chr3:91117746-91117765 None:intergenic 70.0%
! CGGCGCTGGAGCGGTAGTGG+AGG + Chr3:91117737-91117756 None:intergenic 75.0%
!! GGGCGGCGCTGGAGCGGTAG+TGG + Chr3:91117740-91117759 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 91117328 91119465 91117328 ID=MsG0380017044.01;Name=MsG0380017044.01
Chr3 mRNA 91117328 91119465 91117328 ID=MsG0380017044.01.T01;Parent=MsG0380017044.01;Name=MsG0380017044.01.T01;_AED=0.36;_eAED=0.43;_QI=0|0.83|0.71|0.85|1|1|7|0|386
Chr3 exon 91119397 91119465 91119397 ID=MsG0380017044.01.T01:exon:5221;Parent=MsG0380017044.01.T01
Chr3 exon 91118812 91118888 91118812 ID=MsG0380017044.01.T01:exon:5220;Parent=MsG0380017044.01.T01
Chr3 exon 91118439 91118703 91118439 ID=MsG0380017044.01.T01:exon:5219;Parent=MsG0380017044.01.T01
Chr3 exon 91118178 91118354 91118178 ID=MsG0380017044.01.T01:exon:5218;Parent=MsG0380017044.01.T01
Chr3 exon 91117903 91118088 91117903 ID=MsG0380017044.01.T01:exon:5217;Parent=MsG0380017044.01.T01
Chr3 exon 91117665 91117816 91117665 ID=MsG0380017044.01.T01:exon:5216;Parent=MsG0380017044.01.T01
Chr3 exon 91117328 91117562 91117328 ID=MsG0380017044.01.T01:exon:5215;Parent=MsG0380017044.01.T01
Chr3 CDS 91119397 91119465 91119397 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91118812 91118888 91118812 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91118439 91118703 91118439 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91118178 91118354 91118178 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91117903 91118088 91117903 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91117665 91117816 91117665 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Chr3 CDS 91117328 91117562 91117328 ID=MsG0380017044.01.T01:cds;Parent=MsG0380017044.01.T01
Gene Sequence

>MsG0380017044.01.T01

ATGTTTTCAATCGTGAAATCCCTTCTTATGATATCCTTCTCCTTTCAAAACAAGCCGAGAAAACATATGTTTCTGATTTTGTTGAATTCTGACAAAATCATGGACAAGCCTGAGAATCATTTCAATAACGACGATAACAGAGAAAAACAAGCATCTCAGCTTGCTGCATTGTTGAAAGAAATGAAGGAAGGTCTTGATAATGTTAAGCGTAAAATTCAAACTTTAACTGCCAAGGTCAAAAATCAAGATTCTACAGCAGATGGATTCAGCAATCTCGAAGCCAAAAACCTGTTGCTTTTGAATTATTGCCAATTCCTTGTTTATTACTTGCTGCGAAAGGCTAAGGGATATTCAATAGAAGAACATCCTGTTGTTCGAAGTATTGTAGAGATACGATTATTTTTAGAAAAGATTCGTCCGATTGACAAAAAACAACAATACCAAATCCAAAAACTAATTAAAGCTAGTGAAAGTGCAACAAGTGATGCTGGTGAGAAGGAGCCAGCTGCATCCAAAAAGAGTGAAGATGTTTCAAAGTATCGTCCAAATCCTGACATGCTTGTTAGCAAAGTAGAACCAACTGCTGAGGATGGTGATGGTGATGGTGATAATGTGTACCGTCCTCCGAAATTTGCCCCTACATCTATGGATCTGGAAAAATCTTCAAAGCAGGAAAGAAATGCCAGCCGGAGAGACAGAGAAATTCTGAAACAAGCTAAGCAAAGTGATTTTATCAGGTCAATGGTGAATGATATGGAAGACAGACCTGAAGAGATAAGAGATTTTGAGGGAACTAGTAGAGAAGTGAATAAGTATATTAGCAAAATGGAGGATCGGGCTAGGCAAGAGGAGGAGCTGTTCAACCGTGTTCCTCTCACTAGAGAAGAGAGGAAGAGAGATAAGTACATGAAGAAAGCAACAAATGGGATGCAAGGTTTAACAGAGAGTTTATTTGACGAAGTCAGAGTATTACCCTTTGAAGATGACACTGGAGAGATAACAACGGGATCCAGAAAAGGTGGCAGAAGAAATGGGAAGTTGAAGAAGCGAAAGGTATGCCCTTTTGATACTTTGAAATTATTGTGTGAAAACATCAACAACACTACATCTTTTAAACATTGGAAATGTACATTCATTTCAGTTCAACTTTGGTGGATGTGA
Protein sequence

>MsG0380017044.01.T01

MFSIVKSLLMISFSFQNKPRKHMFLILLNSDKIMDKPENHFNNDDNREKQASQLAALLKEMKEGLDNVKRKIQTLTAKVKNQDSTADGFSNLEAKNLLLLNYCQFLVYYLLRKAKGYSIEEHPVVRSIVEIRLFLEKIRPIDKKQQYQIQKLIKASESATSDAGEKEPAASKKSEDVSKYRPNPDMLVSKVEPTAEDGDGDGDNVYRPPKFAPTSMDLEKSSKQERNASRRDREILKQAKQSDFIRSMVNDMEDRPEEIRDFEGTSREVNKYISKMEDRARQEEELFNRVPLTREERKRDKYMKKATNGMQGLTESLFDEVRVLPFEDDTGEITTGSRKGGRRNGKLKKRKVCPFDTLKLLCENINNTTSFKHWKCTFISVQLWWM*