AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022318.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022318.01.T01 MTR_4g088220 72.727 429 11 4 34 356 450 878 0.0 531
MsG0480022318.01.T01 MTR_8g069150 100.000 39 0 0 34 72 24 62 1.04e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022318.01.T01 AT5G46070 44.165 437 138 6 26 356 445 881 1.21e-87 285
MsG0480022318.01.T01 AT1G03830 33.889 180 97 1 25 204 336 493 6.49e-19 89.0
MsG0480022318.01.T01 AT1G03830 33.889 180 97 1 25 204 358 515 6.85e-19 88.6

Find 73 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCAAGGTCCTGGAAAA+TGG 0.269211 4:+71074683 MsG0480022318.01.T01:CDS
TAATTTCTTCTTATCGTTGA+TGG 0.287384 4:-71075012 None:intergenic
GTTCAAATGCATACATTCTA+TGG 0.297242 4:+71074344 MsG0480022318.01.T01:CDS
CTGCACTACTGCGGGATTTG+AGG 0.333363 4:-71075222 None:intergenic
AATAATTAATATTGAACAAC+AGG 0.345858 4:+71074282 None:intergenic
AACTCTGAAATTAGAGTTGA+AGG 0.370925 4:+71075626 MsG0480022318.01.T01:CDS
TTCATTCAACCGACGTTGTA+AGG 0.380049 4:-71074910 None:intergenic
AGGAAGGGAGAAAGATAATC+TGG 0.381254 4:+71076169 MsG0480022318.01.T01:CDS
GCTTGTATGCTTCTGATGCT+AGG 0.385523 4:+71074384 MsG0480022318.01.T01:CDS
TGCACTACTGCGGGATTTGA+GGG 0.400154 4:-71075221 None:intergenic
TTCACTGGCTTCCAGCCGCT+TGG 0.422240 4:-71074952 None:intergenic
TGCTGCTGCCAACCTTGCTT+CGG 0.431643 4:-71075245 None:intergenic
TTACAAAAGGAATGCATTCA+TGG 0.431741 4:+71074306 MsG0480022318.01.T01:CDS
GATAGAGCACGGGCTGAAGC+AGG 0.446378 4:+71076056 MsG0480022318.01.T01:CDS
TGCTTCGGCTGCACTACTGC+GGG 0.453229 4:-71075230 None:intergenic
TATCTATTACCCTCTTGAAA+AGG 0.460525 4:-71074860 None:intergenic
TTGCTGTCTTCTTGCAGCAA+AGG 0.466814 4:+71074713 MsG0480022318.01.T01:CDS
TGAAGCAGGCATGGCTCAGA+AGG 0.471929 4:+71076070 MsG0480022318.01.T01:CDS
GAATATGAAAAGTCCATTCA+AGG 0.479415 4:+71074670 MsG0480022318.01.T01:CDS
ATCTGAGTTCAAAAGATTTG+AGG 0.483402 4:+71075974 MsG0480022318.01.T01:CDS
CTCATATCGCTTGATGTACT+CGG 0.485796 4:-71074985 None:intergenic
CTTGTATGCTTCTGATGCTA+GGG 0.492070 4:+71074385 MsG0480022318.01.T01:CDS
GAAAAGTCCATTCAAGGTCC+TGG 0.494569 4:+71074676 MsG0480022318.01.T01:CDS
GACCTTACTGACCAAGCGGC+TGG 0.494825 4:+71074941 MsG0480022318.01.T01:CDS
AGCAAGGTTGGCAGCAGCAA+GGG 0.496730 4:+71075249 MsG0480022318.01.T01:CDS
GGAAGCAATAGTATATCAGC+AGG 0.497850 4:+71075923 MsG0480022318.01.T01:CDS
GAAGAGTGAGATGCAGAGAC+TGG 0.507152 4:+71076094 MsG0480022318.01.T01:CDS
TTGAACAACAGGATTACAAA+AGG 0.507556 4:+71074293 MsG0480022318.01.T01:CDS
TTCCAGCCGCTTGGTCAGTA+AGG 0.510381 4:-71074943 None:intergenic
ATTGGTACTTCTGCTCAAGA+TGG 0.512425 4:-71075953 None:intergenic
AGCACGGGCTGAAGCAGGCA+TGG 0.516913 4:+71076061 MsG0480022318.01.T01:CDS
TAGTGCAGCCGAAGCAAGGT+TGG 0.519438 4:+71075237 MsG0480022318.01.T01:CDS
AGGAGGCTGATGAGTGGAAA+CGG 0.523697 4:+71075293 MsG0480022318.01.T01:CDS
GCATACATTCTATGGAAAAG+AGG 0.526780 4:+71074352 MsG0480022318.01.T01:CDS
CGAGTACATCAAGCGATATG+AGG 0.528266 4:+71074986 MsG0480022318.01.T01:CDS
TTGCTTCGGCTGCACTACTG+CGG 0.535804 4:-71075231 None:intergenic
GAGACTGGCAATGGAAAGAC+TGG 0.537477 4:+71076109 MsG0480022318.01.T01:CDS
ACAAGCTCAGTCTGCTCAAG+AGG 0.539174 4:+71075273 MsG0480022318.01.T01:CDS
CTCTTGAAAAGGTCAAGCAC+AGG 0.541952 4:-71074849 None:intergenic
GATTTGAGGAGGTTCAAGAA+AGG 0.544667 4:+71075988 MsG0480022318.01.T01:CDS
GAGAGGAGAATTGAAACTCT+AGG 0.553809 4:+71076149 MsG0480022318.01.T01:CDS
GGAGAATTGAAACTCTAGGA+AGG 0.560800 4:+71076153 MsG0480022318.01.T01:CDS
AAGCAAGGTTGGCAGCAGCA+AGG 0.563979 4:+71075248 MsG0480022318.01.T01:CDS
GAAGGTGCAACAAAGAGAGA+AGG 0.564197 4:+71076259 MsG0480022318.01.T01:CDS
ATTCTATGGAAAAGAGGCTG+AGG 0.571876 4:+71074358 MsG0480022318.01.T01:CDS
GAGAGCAACGGATTCAGAGA+AGG 0.573561 4:+71076205 MsG0480022318.01.T01:CDS
AGTTGCGAAGCTCGAAGAGA+AGG 0.575118 4:+71076241 MsG0480022318.01.T01:CDS
AGCTCAGTCTGCTCAAGAGG+AGG 0.581087 4:+71075276 MsG0480022318.01.T01:CDS
CACAGATTGAGAGGGCTGAG+AGG 0.582400 4:+71076132 MsG0480022318.01.T01:CDS
GCAGTAGTGCAGCCGAAGCA+AGG 0.584397 4:+71075233 MsG0480022318.01.T01:CDS
AGCTGCAAGGGCTACTGAAG+TGG 0.586115 4:+71076031 MsG0480022318.01.T01:CDS
TGAGTTCAAAAGATTTGAGG+AGG 0.586772 4:+71075977 MsG0480022318.01.T01:CDS
AAAGACTGGCACAGATTGAG+AGG 0.589219 4:+71076123 MsG0480022318.01.T01:CDS
CTGAAGTGGCTGATAGAGCA+CGG 0.590845 4:+71076045 MsG0480022318.01.T01:CDS
TTTATCAAGGCAGAAAGCTG+AGG 0.595083 4:+71075171 MsG0480022318.01.T01:CDS
GAGAATTGAAACTCTAGGAA+GGG 0.595834 4:+71076154 MsG0480022318.01.T01:CDS
TGAAGTGGCTGATAGAGCAC+GGG 0.596582 4:+71076046 MsG0480022318.01.T01:CDS
AGGGAGAAAGATAATCTGGA+AGG 0.598572 4:+71076173 MsG0480022318.01.T01:CDS
TGAGATGCAGAGACTGGCAA+TGG 0.599747 4:+71076100 MsG0480022318.01.T01:CDS
AAGCGGCTGGAAGCCAGTGA+AGG 0.601767 4:+71074954 MsG0480022318.01.T01:CDS
CTCAAGAGGAGGCTGATGAG+TGG 0.603803 4:+71075287 MsG0480022318.01.T01:CDS
TTCTATGGAAAAGAGGCTGA+GGG 0.608007 4:+71074359 MsG0480022318.01.T01:CDS
TAGGGTTGATAATGTTGCAA+AGG 0.610623 4:+71074403 MsG0480022318.01.T01:CDS
AGGTGAATTGCAGAGAGCAA+CGG 0.618861 4:+71076193 MsG0480022318.01.T01:CDS
TCAAGGCAGAAAGCTGAGGA+AGG 0.628836 4:+71075175 MsG0480022318.01.T01:CDS
CAAGGCCCAGTCATATGAGA+GGG 0.637107 4:+71075902 MsG0480022318.01.T01:intron
TCTTGAAAAGGTCAAGCACA+GGG 0.640354 4:-71074848 None:intergenic
CCAAGGCCCAGTCATATGAG+AGG 0.640589 4:+71075901 MsG0480022318.01.T01:intron
GTTCTCTTGCCTTACAACGT+CGG 0.646107 4:+71074901 MsG0480022318.01.T01:CDS
TAGCTTGCAATTCAGTAATG+CGG 0.652175 4:-71075051 None:intergenic
AGATGACCTTACTGACCAAG+CGG 0.663172 4:+71074937 MsG0480022318.01.T01:CDS
AAGACTGGCACAGATTGAGA+GGG 0.666890 4:+71076124 MsG0480022318.01.T01:CDS
CAAAAGGAATGCATTCATGG+AGG 0.709466 4:+71074309 MsG0480022318.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAAAAAAAAAAAGGA+TGG + Chr4:71074580-71074599 MsG0480022318.01.T01:intron 15.0%
!! AAACAATATGCAAAAGAAAT+GGG - Chr4:71075477-71075496 None:intergenic 20.0%
!! TAAACAATATGCAAAAGAAA+TGG - Chr4:71075478-71075497 None:intergenic 20.0%
!!! ACATATTTTTTAGGAAAAGA+TGG - Chr4:71074807-71074826 None:intergenic 20.0%
!!! TCAACAGAAACATATTTTTT+AGG - Chr4:71074816-71074835 None:intergenic 20.0%
!!! TTTTTTGGTGTGTTTTATTT+CGG + Chr4:71075750-71075769 MsG0480022318.01.T01:intron 20.0%
! TAATTTCTTCTTATCGTTGA+TGG - Chr4:71075015-71075034 None:intergenic 25.0%
! TTGGAAAAGAAAATATGAAC+AGG + Chr4:71075147-71075166 MsG0480022318.01.T01:intron 25.0%
!! ATATTTTCTTTTCCAATCCA+TGG - Chr4:71075143-71075162 None:intergenic 25.0%
!!! AATATGAACAGGTTTTATCA+AGG + Chr4:71075158-71075177 MsG0480022318.01.T01:intron 25.0%
!!! AGAGTTGAAGGTAATTTTTT+TGG + Chr4:71075638-71075657 MsG0480022318.01.T01:intron 25.0%
!!! ATATGACAAACTCTCTTTTT+TGG + Chr4:71075735-71075754 MsG0480022318.01.T01:intron 25.0%
!!! CTGTGAAGTTTTTTTTTTTG+TGG + Chr4:71074753-71074772 MsG0480022318.01.T01:intron 25.0%
!!! TTCTAGCTTATTGAAAACAT+TGG + Chr4:71075099-71075118 MsG0480022318.01.T01:intron 25.0%
AATATGCAAAAGAAATGGGT+GGG - Chr4:71075473-71075492 None:intergenic 30.0%
ATCTGAGTTCAAAAGATTTG+AGG + Chr4:71075974-71075993 MsG0480022318.01.T01:CDS 30.0%
CAAAGATAAAATATCCAACC+TGG - Chr4:71074623-71074642 None:intergenic 30.0%
CCAACAAAATGAATGAATGA+AGG - Chr4:71074469-71074488 None:intergenic 30.0%
GAAAAGATGGAAAAAAAGAC+CGG - Chr4:71074794-71074813 None:intergenic 30.0%
GAATATGAAAAGTCCATTCA+AGG + Chr4:71074670-71074689 MsG0480022318.01.T01:CDS 30.0%
GTTCAAATGCATACATTCTA+TGG + Chr4:71074344-71074363 MsG0480022318.01.T01:CDS 30.0%
TATCTATTACCCTCTTGAAA+AGG - Chr4:71074863-71074882 None:intergenic 30.0%
TGTATCATAACTCCTTATCT+TGG - Chr4:71075821-71075840 None:intergenic 30.0%
TTACAAAAGGAATGCATTCA+TGG + Chr4:71074306-71074325 MsG0480022318.01.T01:CDS 30.0%
TTGAACAACAGGATTACAAA+AGG + Chr4:71074293-71074312 MsG0480022318.01.T01:CDS 30.0%
! AAATGAAATCTGAAATGCCA+AGG + Chr4:71075884-71075903 MsG0480022318.01.T01:intron 30.0%
! CAAATCTTTTGAACTCAGAT+TGG - Chr4:71075974-71075993 None:intergenic 30.0%
! CCTTCATTCATTCATTTTGT+TGG + Chr4:71074466-71074485 MsG0480022318.01.T01:intron 30.0%
!! AACTCTGAAATTAGAGTTGA+AGG + Chr4:71075626-71075645 MsG0480022318.01.T01:CDS 30.0%
!!! GTTTCTGTTGATAGTTTTGA+AGG + Chr4:71074825-71074844 MsG0480022318.01.T01:intron 30.0%
AAAGGGAAAGAAAACAAGAG+AGG + Chr4:71074518-71074537 MsG0480022318.01.T01:intron 35.0%
AATATTGTGCTTGTACTTGC+AGG + Chr4:71075786-71075805 MsG0480022318.01.T01:intron 35.0%
ATACAGAAATATCGTCACTG+AGG + Chr4:71075836-71075855 MsG0480022318.01.T01:intron 35.0%
CAATATGCAAAAGAAATGGG+TGG - Chr4:71075474-71075493 None:intergenic 35.0%
GCATACATTCTATGGAAAAG+AGG + Chr4:71074352-71074371 MsG0480022318.01.T01:CDS 35.0%
TACCCATAATTCCTTGCAAA+CGG + Chr4:71075520-71075539 MsG0480022318.01.T01:intron 35.0%
TGAGTTCAAAAGATTTGAGG+AGG + Chr4:71075977-71075996 MsG0480022318.01.T01:CDS 35.0%
! ATCTTGTTTGAAACCCGAAA+GGG + Chr4:71074501-71074520 MsG0480022318.01.T01:intron 35.0%
! GACTTGTTTGCTAATTATGC+AGG + Chr4:71075548-71075567 MsG0480022318.01.T01:intron 35.0%
! GAGAATTGAAACTCTAGGAA+GGG + Chr4:71076154-71076173 MsG0480022318.01.T01:CDS 35.0%
! GGATATTTTATCTTTGACGC+AGG + Chr4:71074627-71074646 MsG0480022318.01.T01:intron 35.0%
! TAGCTTGCAATTCAGTAATG+CGG - Chr4:71075054-71075073 None:intergenic 35.0%
! TATCTTGTTTGAAACCCGAA+AGG + Chr4:71074500-71074519 MsG0480022318.01.T01:intron 35.0%
!! TAGGGTTGATAATGTTGCAA+AGG + Chr4:71074403-71074422 MsG0480022318.01.T01:CDS 35.0%
!!! CTCTTGTTTTCTTTCCCTTT+CGG - Chr4:71074518-71074537 None:intergenic 35.0%
!!! GCAAGTTTTTTCCATTTTCC+AGG - Chr4:71074697-71074716 None:intergenic 35.0%
!!! GTTTTATTTCGGTCTTTTCG+AGG + Chr4:71075761-71075780 MsG0480022318.01.T01:intron 35.0%
!!! TCTTGTTTTCTTTCCCTTTC+GGG - Chr4:71074517-71074536 None:intergenic 35.0%
!!! TTTTTTGTGGTTGAGAGTAG+TGG + Chr4:71074766-71074785 MsG0480022318.01.T01:intron 35.0%
AAAAGAAATGGGTGGGTATC+AGG - Chr4:71075466-71075485 None:intergenic 40.0%
AAACAAGCAGACACAGTTGA+GGG + Chr4:71075383-71075402 MsG0480022318.01.T01:intron 40.0%
AACATTGGACTCTAGTAAGC+AGG + Chr4:71075114-71075133 MsG0480022318.01.T01:intron 40.0%
AACCCGTTTGCAAGGAATTA+TGG - Chr4:71075526-71075545 None:intergenic 40.0%
ACCCATAATTCCTTGCAAAC+GGG + Chr4:71075521-71075540 MsG0480022318.01.T01:intron 40.0%
ACCCGTTTGCAAGGAATTAT+GGG - Chr4:71075525-71075544 None:intergenic 40.0%
AGGAAGGGAGAAAGATAATC+TGG + Chr4:71076169-71076188 MsG0480022318.01.T01:CDS 40.0%
AGGGAGAAAGATAATCTGGA+AGG + Chr4:71076173-71076192 MsG0480022318.01.T01:CDS 40.0%
ATTCTATGGAAAAGAGGCTG+AGG + Chr4:71074358-71074377 MsG0480022318.01.T01:CDS 40.0%
ATTGGTACTTCTGCTCAAGA+TGG - Chr4:71075956-71075975 None:intergenic 40.0%
CAAAAGGAATGCATTCATGG+AGG + Chr4:71074309-71074328 MsG0480022318.01.T01:CDS 40.0%
CTCATATCGCTTGATGTACT+CGG - Chr4:71074988-71075007 None:intergenic 40.0%
CTTGTATGCTTCTGATGCTA+GGG + Chr4:71074385-71074404 MsG0480022318.01.T01:CDS 40.0%
GAGAGGAGAATTGAAACTCT+AGG + Chr4:71076149-71076168 MsG0480022318.01.T01:CDS 40.0%
GATTTGAGGAGGTTCAAGAA+AGG + Chr4:71075988-71076007 MsG0480022318.01.T01:CDS 40.0%
GGAAGCAATAGTATATCAGC+AGG + Chr4:71075923-71075942 MsG0480022318.01.T01:CDS 40.0%
GTCTTAAGAGAAGAGTTCTC+TGG + Chr4:71075411-71075430 MsG0480022318.01.T01:intron 40.0%
TCTTGAAAAGGTCAAGCACA+GGG - Chr4:71074851-71074870 None:intergenic 40.0%
TGCTGAAAAAGAAGCTGCAA+GGG + Chr4:71076019-71076038 MsG0480022318.01.T01:CDS 40.0%
TGTCTCGGCACTATTATGAA+GGG + Chr4:71075675-71075694 MsG0480022318.01.T01:intron 40.0%
TTCATTCAACCGACGTTGTA+AGG - Chr4:71074913-71074932 None:intergenic 40.0%
TTCTATGGAAAAGAGGCTGA+GGG + Chr4:71074359-71074378 MsG0480022318.01.T01:CDS 40.0%
TTGTCTCGGCACTATTATGA+AGG + Chr4:71075674-71075693 MsG0480022318.01.T01:intron 40.0%
TTTATCAAGGCAGAAAGCTG+AGG + Chr4:71075171-71075190 MsG0480022318.01.T01:CDS 40.0%
! GGAGAATTGAAACTCTAGGA+AGG + Chr4:71076153-71076172 MsG0480022318.01.T01:CDS 40.0%
!! AAGCAAATCTGCTCTAGAGA+AGG + Chr4:71075338-71075357 MsG0480022318.01.T01:intron 40.0%
!! AGAAGAGTTCTCTGGAACTT+TGG + Chr4:71075419-71075438 MsG0480022318.01.T01:intron 40.0%
!! GCTTCTTAGAAGTGTTGTCT+CGG + Chr4:71075660-71075679 MsG0480022318.01.T01:intron 40.0%
!! TGTGCTTGACCTTTTCAAGA+GGG + Chr4:71074851-71074870 MsG0480022318.01.T01:CDS 40.0%
AAAGACTGGCACAGATTGAG+AGG + Chr4:71076123-71076142 MsG0480022318.01.T01:CDS 45.0%
AAGACTGGCACAGATTGAGA+GGG + Chr4:71076124-71076143 MsG0480022318.01.T01:CDS 45.0%
ACCTGGTCGTCAATTCAACA+AGG - Chr4:71074606-71074625 None:intergenic 45.0%
AGAGAAGGCAGCAATTGTTC+AGG + Chr4:71075353-71075372 MsG0480022318.01.T01:intron 45.0%
AGATGACCTTACTGACCAAG+CGG + Chr4:71074937-71074956 MsG0480022318.01.T01:CDS 45.0%
AGGTGAATTGCAGAGAGCAA+CGG + Chr4:71076193-71076212 MsG0480022318.01.T01:CDS 45.0%
CAAACAAGCAGACACAGTTG+AGG + Chr4:71075382-71075401 MsG0480022318.01.T01:intron 45.0%
CCATTCAAGGTCCTGGAAAA+TGG + Chr4:71074683-71074702 MsG0480022318.01.T01:CDS 45.0%
CGAGTACATCAAGCGATATG+AGG + Chr4:71074986-71075005 MsG0480022318.01.T01:CDS 45.0%
CTCTAGTAAGCAGGAATCCA+TGG + Chr4:71075123-71075142 MsG0480022318.01.T01:intron 45.0%
CTCTTGAAAAGGTCAAGCAC+AGG - Chr4:71074852-71074871 None:intergenic 45.0%
CTGCTGAAAAAGAAGCTGCA+AGG + Chr4:71076018-71076037 MsG0480022318.01.T01:CDS 45.0%
GAAAAGTCCATTCAAGGTCC+TGG + Chr4:71074676-71074695 MsG0480022318.01.T01:CDS 45.0%
GCTTGTATGCTTCTGATGCT+AGG + Chr4:71074384-71074403 MsG0480022318.01.T01:CDS 45.0%
GTAAGCAGGAATCCATGGAT+TGG + Chr4:71075128-71075147 MsG0480022318.01.T01:intron 45.0%
GTTCTCTTGCCTTACAACGT+CGG + Chr4:71074901-71074920 MsG0480022318.01.T01:CDS 45.0%
TGCTTCCCTCTCATATGACT+GGG - Chr4:71075910-71075929 None:intergenic 45.0%
TGTTGAATTGACGACCAGGT+TGG + Chr4:71074606-71074625 MsG0480022318.01.T01:intron 45.0%
TTGCTGTCTTCTTGCAGCAA+AGG + Chr4:71074713-71074732 MsG0480022318.01.T01:CDS 45.0%
TTGCTTCCCTCTCATATGAC+TGG - Chr4:71075911-71075930 None:intergenic 45.0%
! CCATTTTCCAGGACCTTGAA+TGG - Chr4:71074686-71074705 None:intergenic 45.0%
! GAAGGTGCAACAAAGAGAGA+AGG + Chr4:71076259-71076278 MsG0480022318.01.T01:CDS 45.0%
!! CTGTGCTTGACCTTTTCAAG+AGG + Chr4:71074850-71074869 MsG0480022318.01.T01:CDS 45.0%
!!! TTTTTGAAAAAAAAAAAAAA+AGG + Chr4:71074576-71074595 MsG0480022318.01.T01:intron 5.0%
ACAAGCTCAGTCTGCTCAAG+AGG + Chr4:71075273-71075292 MsG0480022318.01.T01:CDS 50.0%
AGAAATGGGTGGGTATCAGG+AGG - Chr4:71075463-71075482 None:intergenic 50.0%
AGGAGGCTGATGAGTGGAAA+CGG + Chr4:71075293-71075312 MsG0480022318.01.T01:CDS 50.0%
AGGCTGCTGAGTCCAAGATA+AGG + Chr4:71075806-71075825 MsG0480022318.01.T01:intron 50.0%
AGTTGCGAAGCTCGAAGAGA+AGG + Chr4:71076241-71076260 MsG0480022318.01.T01:CDS 50.0%
CAAGGCCCAGTCATATGAGA+GGG + Chr4:71075902-71075921 MsG0480022318.01.T01:intron 50.0%
CAAGTCAGAACCCGTTTGCA+AGG - Chr4:71075534-71075553 None:intergenic 50.0%
CTGAAGTGGCTGATAGAGCA+CGG + Chr4:71076045-71076064 MsG0480022318.01.T01:CDS 50.0%
GAAGAGTGAGATGCAGAGAC+TGG + Chr4:71076094-71076113 MsG0480022318.01.T01:CDS 50.0%
GAGACTGGCAATGGAAAGAC+TGG + Chr4:71076109-71076128 MsG0480022318.01.T01:CDS 50.0%
TCAAGGCAGAAAGCTGAGGA+AGG + Chr4:71075175-71075194 MsG0480022318.01.T01:CDS 50.0%
TGAAGTGGCTGATAGAGCAC+GGG + Chr4:71076046-71076065 MsG0480022318.01.T01:CDS 50.0%
TGAGATGCAGAGACTGGCAA+TGG + Chr4:71076100-71076119 MsG0480022318.01.T01:CDS 50.0%
TGCACTACTGCGGGATTTGA+GGG - Chr4:71075224-71075243 None:intergenic 50.0%
! CTCGGACTTTTCACCTTCAC+TGG - Chr4:71074970-71074989 None:intergenic 50.0%
! GAGAGCAACGGATTCAGAGA+AGG + Chr4:71076205-71076224 MsG0480022318.01.T01:CDS 50.0%
! GCCTTGTTGAATTGACGACC+AGG + Chr4:71074602-71074621 MsG0480022318.01.T01:intron 50.0%
! GTGGTTGAGAGTAGTGGAAC+CGG + Chr4:71074772-71074791 MsG0480022318.01.T01:intron 50.0%
AAGCAAGGTTGGCAGCAGCA+AGG + Chr4:71075248-71075267 MsG0480022318.01.T01:CDS 55.0%
AGCAAGGTTGGCAGCAGCAA+GGG + Chr4:71075249-71075268 MsG0480022318.01.T01:CDS 55.0%
AGCTCAGTCTGCTCAAGAGG+AGG + Chr4:71075276-71075295 MsG0480022318.01.T01:CDS 55.0%
AGCTGCAAGGGCTACTGAAG+TGG + Chr4:71076031-71076050 MsG0480022318.01.T01:CDS 55.0%
CACAGATTGAGAGGGCTGAG+AGG + Chr4:71076132-71076151 MsG0480022318.01.T01:CDS 55.0%
CCAAGGCCCAGTCATATGAG+AGG + Chr4:71075901-71075920 MsG0480022318.01.T01:intron 55.0%
CCTCTCATATGACTGGGCCT+TGG - Chr4:71075904-71075923 None:intergenic 55.0%
CTCAAGAGGAGGCTGATGAG+TGG + Chr4:71075287-71075306 MsG0480022318.01.T01:CDS 55.0%
CTGCACTACTGCGGGATTTG+AGG - Chr4:71075225-71075244 None:intergenic 55.0%
GCAAGCTAATCGTCGCTCAC+TGG + Chr4:71075066-71075085 MsG0480022318.01.T01:intron 55.0%
TAGTGCAGCCGAAGCAAGGT+TGG + Chr4:71075237-71075256 MsG0480022318.01.T01:CDS 55.0%
TGAAGCAGGCATGGCTCAGA+AGG + Chr4:71076070-71076089 MsG0480022318.01.T01:CDS 55.0%
TGCTGCTGCCAACCTTGCTT+CGG - Chr4:71075248-71075267 None:intergenic 55.0%
TTCCAGCCGCTTGGTCAGTA+AGG - Chr4:71074946-71074965 None:intergenic 55.0%
TTGCTTCGGCTGCACTACTG+CGG - Chr4:71075234-71075253 None:intergenic 55.0%
AAGCGGCTGGAAGCCAGTGA+AGG + Chr4:71074954-71074973 MsG0480022318.01.T01:CDS 60.0%
GACCTTACTGACCAAGCGGC+TGG + Chr4:71074941-71074960 MsG0480022318.01.T01:CDS 60.0%
GCAGTAGTGCAGCCGAAGCA+AGG + Chr4:71075233-71075252 MsG0480022318.01.T01:CDS 60.0%
TGCTTCGGCTGCACTACTGC+GGG - Chr4:71075233-71075252 None:intergenic 60.0%
! GATAGAGCACGGGCTGAAGC+AGG + Chr4:71076056-71076075 MsG0480022318.01.T01:CDS 60.0%
!! TTCACTGGCTTCCAGCCGCT+TGG - Chr4:71074955-71074974 None:intergenic 60.0%
! AGCACGGGCTGAAGCAGGCA+TGG + Chr4:71076061-71076080 MsG0480022318.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 71074293 71076286 71074293 ID=MsG0480022318.01;Name=MsG0480022318.01
Chr4 mRNA 71074293 71076286 71074293 ID=MsG0480022318.01.T01;Parent=MsG0480022318.01;Name=MsG0480022318.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.4|0.33|1|1|1|6|0|356
Chr4 exon 71074293 71074424 71074293 ID=MsG0480022318.01.T01:exon:2382;Parent=MsG0480022318.01.T01
Chr4 exon 71074649 71074734 71074649 ID=MsG0480022318.01.T01:exon:2383;Parent=MsG0480022318.01.T01
Chr4 exon 71074839 71075076 71074839 ID=MsG0480022318.01.T01:exon:2384;Parent=MsG0480022318.01.T01
Chr4 exon 71075169 71075330 71075169 ID=MsG0480022318.01.T01:exon:2385;Parent=MsG0480022318.01.T01
Chr4 exon 71075570 71075647 71075570 ID=MsG0480022318.01.T01:exon:2386;Parent=MsG0480022318.01.T01
Chr4 exon 71075912 71076286 71075912 ID=MsG0480022318.01.T01:exon:2387;Parent=MsG0480022318.01.T01
Chr4 CDS 71074293 71074424 71074293 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Chr4 CDS 71074649 71074734 71074649 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Chr4 CDS 71074839 71075076 71074839 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Chr4 CDS 71075169 71075330 71075169 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Chr4 CDS 71075570 71075647 71075570 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Chr4 CDS 71075912 71076286 71075912 ID=MsG0480022318.01.T01:cds;Parent=MsG0480022318.01.T01
Gene Sequence

>MsG0480022318.01.T01

TTGAACAACAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGACCGCATTACTGAATTGCAAGCTAATCGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTAG

Protein sequence

>MsG0480022318.01.T01

LNNRITKGMHSWRQIYNVQMHTFYGKEAEGSLYASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMTALLNCKLIVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVADEEIKEKTAKIEHAEMCLATLKLELKSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKD*