AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017631.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017631.01.T01 MTR_3g110022 86.784 227 4 2 1 213 1 215 4.51e-128 360
MsG0380017631.01.T01 MTR_3g110022 84.181 177 2 2 1 163 1 165 3.73e-91 265
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017631.01.T01 AT5G11500 75.771 227 29 2 1 213 1 215 1.31e-124 351
MsG0380017631.01.T01 AT5G11500 75.771 227 28 3 1 213 1 214 1.47e-122 346

Find 80 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACTATGCGAAATTATC+AGG 0.173736 3:+98801393 MsG0380017631.01.T01:three_prime_UTR
TTGGGAGTTGAATTTCAATT+TGG 0.195511 3:-98797223 None:intergenic
GATAAAGGAGAATATTAAAT+AGG 0.199656 3:+98801187 MsG0380017631.01.T01:three_prime_UTR
TTCATGTAAACATTGGTTAT+TGG 0.243511 3:+98801040 MsG0380017631.01.T01:exon
TTGGGTTAGGGTTCTGAGTT+TGG 0.289228 3:-98797242 None:intergenic
ATGGTGTAATCGCCAGCTTC+AGG 0.299549 3:-98797350 None:intergenic
TGACATGAGTGAAGGTTTAT+TGG 0.304812 3:+98798445 MsG0380017631.01.T01:CDS
TGGGAGTTGAATTTCAATTT+GGG 0.305116 3:-98797222 None:intergenic
TGTGTACCCAATTGTGATTT+AGG 0.314237 3:+98801164 MsG0380017631.01.T01:three_prime_UTR
CTTTATCCCTAAATCACAAT+TGG 0.320848 3:-98801171 None:intergenic
TCCTGAAGCAATGTCTTTGT+TGG 0.330602 3:-98800987 None:intergenic
TGAAATCCTCCTCCACTTCC+TGG 0.332125 3:-98801021 None:intergenic
CAATTGTGATTTAGGGATAA+AGG 0.352542 3:+98801172 MsG0380017631.01.T01:three_prime_UTR
CTGCATCATTGTCTTGGTTA+AGG 0.354589 3:+98801128 MsG0380017631.01.T01:three_prime_UTR
AGAGGGAAGTGCGTTGGGTT+AGG 0.359943 3:-98797255 None:intergenic
TATTAGTCACCTTTCAAATC+AGG 0.362648 3:-98799352 None:intergenic
TGAGTCTTGTTAGGCTTGTC+AGG 0.374176 3:+98801345 MsG0380017631.01.T01:three_prime_UTR
AAATCTAAGCAACTCAATAA+TGG 0.375697 3:+98797307 MsG0380017631.01.T01:exon
GTCAAAGCAAATTCAATTCA+AGG 0.385597 3:+98798485 MsG0380017631.01.T01:CDS
GGAAATAGAAAGACTAGAAA+AGG 0.394170 3:+98800907 MsG0380017631.01.T01:CDS
TGGCGATTACACCATCTTCA+TGG 0.399028 3:+98797358 MsG0380017631.01.T01:CDS
TGGGTTAGGGTTCTGAGTTT+GGG 0.402548 3:-98797241 None:intergenic
GTGTACCCAATTGTGATTTA+GGG 0.403094 3:+98801165 MsG0380017631.01.T01:three_prime_UTR
ATAAAGGAGAATATTAAATA+GGG 0.409087 3:+98801188 MsG0380017631.01.T01:three_prime_UTR
TAGGAGCTACAAGGGTTTGA+TGG 0.418648 3:+98800946 MsG0380017631.01.T01:CDS
CACAAGCAAAGTTATAAATC+AGG 0.423869 3:-98801258 None:intergenic
TTCAGGAAGCAAATCATTCC+AGG 0.424780 3:+98801003 MsG0380017631.01.T01:CDS
TCCAACAAAGACATTGCTTC+AGG 0.427259 3:+98800986 MsG0380017631.01.T01:CDS
GAGGGAAGTGCGTTGGGTTA+GGG 0.431708 3:-98797254 None:intergenic
CCAGTTGGGTTGTTTAATCA+TGG 0.441424 3:-98801096 None:intergenic
AGATAAATGAGATTGTTAAC+AGG 0.451759 3:+98799302 MsG0380017631.01.T01:CDS
CCATGATTAAACAACCCAAC+TGG 0.462840 3:+98801096 MsG0380017631.01.T01:three_prime_UTR
TTCAAAGCACGCCCTGAAGC+TGG 0.470944 3:+98797338 MsG0380017631.01.T01:CDS
ACGAGAGAGGGAAGTGCGTT+GGG 0.471057 3:-98797260 None:intergenic
AGGAGAAACAATCAGAGCTT+AGG 0.472437 3:+98800927 MsG0380017631.01.T01:CDS
CACGAGAGAGGGAAGTGCGT+TGG 0.473430 3:-98797261 None:intergenic
CTGAAACTGCATCATTGTCT+TGG 0.475503 3:+98801122 MsG0380017631.01.T01:three_prime_UTR
ACGGTTTCATCGAAGACATC+TGG 0.476438 3:+98797417 MsG0380017631.01.T01:CDS
TTTATCCCTAAATCACAATT+GGG 0.484561 3:-98801170 None:intergenic
TTTAAAGAAAACTGCTTCGA+TGG 0.487046 3:+98799072 MsG0380017631.01.T01:CDS
TATAACTTTGCTTGTGACAA+TGG 0.488259 3:+98801265 MsG0380017631.01.T01:three_prime_UTR
CTAGTCTTTCTATTTCCTCA+CGG 0.488887 3:-98800901 None:intergenic
TGGTGTAATCGCCAGCTTCA+GGG 0.491316 3:-98797349 None:intergenic
AAGCAAATCATTCCAGGAAG+TGG 0.495884 3:+98801009 MsG0380017631.01.T01:CDS
TTGATGTTGTTTACACTCCC+TGG 0.498834 3:+98799044 MsG0380017631.01.T01:CDS
TGCAGTTTCAGATTCCAGTT+GGG 0.507376 3:-98801110 None:intergenic
GCTGATCTTGTTATCTATGC+GGG 0.510394 3:+98799539 MsG0380017631.01.T01:intron
CACGCACGCAGCACGAGAGA+GGG 0.516884 3:-98797272 None:intergenic
AACGAGGAGCTCATCAAATA+CGG 0.524376 3:+98797398 MsG0380017631.01.T01:CDS
TCGATGGACGTTGGTCAAGT+TGG 0.525188 3:+98799088 MsG0380017631.01.T01:CDS
ATCATTCCAGGAAGTGGAGG+AGG 0.526776 3:+98801015 MsG0380017631.01.T01:CDS
GGAGGATTTCATGTAAACAT+TGG 0.527466 3:+98801033 MsG0380017631.01.T01:exon
GGAGAATATTAAATAGGGAG+GGG 0.530404 3:+98801193 MsG0380017631.01.T01:three_prime_UTR
ATGCAGTTTCAGATTCCAGT+TGG 0.535743 3:-98801111 None:intergenic
AGGAGAATATTAAATAGGGA+GGG 0.537963 3:+98801192 MsG0380017631.01.T01:three_prime_UTR
AATTGGGTACACACACCACT+TGG 0.544733 3:-98801154 None:intergenic
GCACGCACGCAGCACGAGAG+AGG 0.547161 3:-98797273 None:intergenic
CTTGTCAAGACCCATGAAGA+TGG 0.559047 3:-98797369 None:intergenic
AAGGAGAATATTAAATAGGG+AGG 0.563329 3:+98801191 MsG0380017631.01.T01:three_prime_UTR
GGCGATTACACCATCTTCAT+GGG 0.565091 3:+98797359 MsG0380017631.01.T01:CDS
TTAACTATGCGAAATTATCA+GGG 0.568132 3:+98801394 MsG0380017631.01.T01:three_prime_UTR
ATCAGAGCTTAGGAGCTACA+AGG 0.570116 3:+98800937 MsG0380017631.01.T01:CDS
GAAAGAAAACCTGATTTGAA+AGG 0.573575 3:+98799343 MsG0380017631.01.T01:CDS
TTGGCTTATAGACAGATGAC+TGG 0.592804 3:+98801059 MsG0380017631.01.T01:three_prime_UTR
GGGAGTTGAATTTCAATTTG+GGG 0.595002 3:-98797221 None:intergenic
AGCTGATCTTGTTATCTATG+CGG 0.605195 3:+98799538 MsG0380017631.01.T01:intron
ACTATTGATGACATGAGTGA+AGG 0.607342 3:+98798437 MsG0380017631.01.T01:CDS
CAAATCATTCCAGGAAGTGG+AGG 0.612983 3:+98801012 MsG0380017631.01.T01:CDS
CAGGCTAAACAAAACGAAGG+TGG 0.619805 3:+98799321 MsG0380017631.01.T01:CDS
TTAGGTGCGAACTGTGAGAG+TGG 0.624552 3:+98799273 MsG0380017631.01.T01:intron
TCTTGACAAGTTCGAGAACG+AGG 0.634328 3:+98797382 MsG0380017631.01.T01:CDS
TCAGAGCTTAGGAGCTACAA+GGG 0.638922 3:+98800938 MsG0380017631.01.T01:CDS
AAAACTGCTTCGATGGACGT+TGG 0.639922 3:+98799079 MsG0380017631.01.T01:CDS
GCTTATAGACAGATGACTGG+TGG 0.679740 3:+98801062 MsG0380017631.01.T01:three_prime_UTR
GTTTATGTCAGGCTGCACAA+AGG 0.698981 3:+98798410 MsG0380017631.01.T01:intron
CTGTGTGCAGAAGCGCCGTG+AGG 0.707586 3:+98800886 MsG0380017631.01.T01:intron
TCAGGTATATAACCATCACA+AGG 0.717871 3:-98801240 None:intergenic
TAACAGGCTAAACAAAACGA+AGG 0.733246 3:+98799318 MsG0380017631.01.T01:CDS
CTGCTGCTGAAAGAGCTGAG+AGG 0.735071 3:+98799594 MsG0380017631.01.T01:CDS
TCTTGGTTAAGGAAACCAAG+TGG 0.738141 3:+98801139 MsG0380017631.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTAAAAAAAACCTATAA+AGG - Chr3:98799398-98799417 None:intergenic 15.0%
!! ATAAAGGAGAATATTAAATA+GGG + Chr3:98801188-98801207 MsG0380017631.01.T01:three_prime_UTR 15.0%
!! CATTTAATTAATGATTGAAT+CGG + Chr3:98798347-98798366 MsG0380017631.01.T01:intron 15.0%
!! TACTGCAAAAAAAAAAAAAA+AGG - Chr3:98799187-98799206 None:intergenic 15.0%
!!! CATTTATGATTAGAATTTTA+TGG + Chr3:98799414-98799433 MsG0380017631.01.T01:intron 15.0%
!! AATTTGTCATAAGCTTAAAA+AGG - Chr3:98798813-98798832 None:intergenic 20.0%
!! ATAAACAGATAGAAAATACT+AGG + Chr3:98800116-98800135 MsG0380017631.01.T01:intron 20.0%
!! ATTTGTCATAAGCTTAAAAA+GGG - Chr3:98798812-98798831 None:intergenic 20.0%
!! CTTGAAAGAATACATAAAAT+TGG - Chr3:98798571-98798590 None:intergenic 20.0%
!! GATAAAGGAGAATATTAAAT+AGG + Chr3:98801187-98801206 MsG0380017631.01.T01:three_prime_UTR 20.0%
!! GTTCAAATGATATTCTTATT+TGG + Chr3:98798259-98798278 MsG0380017631.01.T01:intron 20.0%
!! TAATTTCAACTTATACAAGA+AGG - Chr3:98798735-98798754 None:intergenic 20.0%
!! TACTAAAAGTCATTATAATC+CGG + Chr3:98800061-98800080 MsG0380017631.01.T01:intron 20.0%
!!! ATAATTTTATGAGTCTTGTT+AGG + Chr3:98801336-98801355 MsG0380017631.01.T01:three_prime_UTR 20.0%
!!! ATTTTTACATTAGATTACTC+AGG + Chr3:98799913-98799932 MsG0380017631.01.T01:intron 20.0%
!!! TACCTTTTTTTCTTTATTCA+TGG + Chr3:98799000-98799019 MsG0380017631.01.T01:intron 20.0%
!!! TTTTTTCAAATAAGATGACA+TGG - Chr3:98797901-98797920 None:intergenic 20.0%
!!! TTTTTTTTTTTGCAGTAGTT+GGG + Chr3:98799190-98799209 MsG0380017631.01.T01:intron 20.0%
!!! TTTTTTTTTTTTGCAGTAGT+TGG + Chr3:98799189-98799208 MsG0380017631.01.T01:intron 20.0%
! AAAAAAAACCTATAAAGGCA+AGG - Chr3:98799393-98799412 None:intergenic 25.0%
! AAAGATATTTCATTGTTAGC+AGG - Chr3:98800472-98800491 None:intergenic 25.0%
! AAATCTAAGCAACTCAATAA+TGG + Chr3:98797307-98797326 MsG0380017631.01.T01:exon 25.0%
! AATTCATGAAATTGGCAAAT+AGG - Chr3:98797461-98797480 None:intergenic 25.0%
! AGATAAATGAGATTGTTAAC+AGG + Chr3:98799302-98799321 MsG0380017631.01.T01:CDS 25.0%
! ATTTCAGTTGCATTTATAAC+TGG + Chr3:98798600-98798619 MsG0380017631.01.T01:intron 25.0%
! CAAAATCATAAATCAGACTA+AGG - Chr3:98797534-98797553 None:intergenic 25.0%
! GAAGAAGAAATTCATGAAAT+TGG - Chr3:98797469-98797488 None:intergenic 25.0%
! TAAGTTAACAGTATATCATG+AGG - Chr3:98799836-98799855 None:intergenic 25.0%
! TATATTGTGCTTAGATACTT+TGG - Chr3:98799685-98799704 None:intergenic 25.0%
! TATCTGTTTATTTCAGCATT+GGG - Chr3:98800107-98800126 None:intergenic 25.0%
! TCACAAATATAACATCCTAA+AGG - Chr3:98800709-98800728 None:intergenic 25.0%
! TGCCATGAATAAAGAAAAAA+AGG - Chr3:98799005-98799024 None:intergenic 25.0%
! TTAACTATGCGAAATTATCA+GGG + Chr3:98801394-98801413 MsG0380017631.01.T01:three_prime_UTR 25.0%
! TTATGAGTTTGACAATGATA+TGG - Chr3:98800170-98800189 None:intergenic 25.0%
! TTGATTGAATTTGTAGTGAT+TGG - Chr3:98797971-98797990 None:intergenic 25.0%
! TTTATAACTGGAAATCTGAA+AGG + Chr3:98798612-98798631 MsG0380017631.01.T01:intron 25.0%
! TTTATCCCTAAATCACAATT+GGG - Chr3:98801173-98801192 None:intergenic 25.0%
!! AGATTTAGAAATTTTGCATC+AGG - Chr3:98798221-98798240 None:intergenic 25.0%
!! ATTTAGAAATTTTGCATCAG+GGG - Chr3:98798219-98798238 None:intergenic 25.0%
!! GATTTAGAAATTTTGCATCA+GGG - Chr3:98798220-98798239 None:intergenic 25.0%
!! GCTTATGACAAATTTTTCTT+AGG + Chr3:98798819-98798838 MsG0380017631.01.T01:intron 25.0%
!! TCTTTAGAAACTAGGATATT+GGG + Chr3:98797599-98797618 MsG0380017631.01.T01:intron 25.0%
!! TTAGAATTTTATGGATGAAG+AGG + Chr3:98799423-98799442 MsG0380017631.01.T01:intron 25.0%
!! TTATGTTTTATGCAGCAATT+CGG + Chr3:98797189-98797208 MsG0380017631.01.T01:five_prime_UTR 25.0%
!! TTCATGTAAACATTGGTTAT+TGG + Chr3:98801040-98801059 MsG0380017631.01.T01:exon 25.0%
!! TTTTATTAGATCTTGACCAA+TGG + Chr3:98800206-98800225 MsG0380017631.01.T01:intron 25.0%
!!! AGAAGATATTCATTTTTAGC+AGG - Chr3:98800783-98800802 None:intergenic 25.0%
!!! AGGTTTAAACTTTTGCTTTT+AGG + Chr3:98801365-98801384 MsG0380017631.01.T01:three_prime_UTR 25.0%
!!! TTTTGAAGTATTCATGTTAC+TGG + Chr3:98801419-98801438 MsG0380017631.01.T01:three_prime_UTR 25.0%
!!! TTTTTTCTTTATTCATGGCA+GGG + Chr3:98799005-98799024 MsG0380017631.01.T01:intron 25.0%
!!! TTTTTTTCTTTATTCATGGC+AGG + Chr3:98799004-98799023 MsG0380017631.01.T01:intron 25.0%
!!! TTTTTTTTTTGCAGTAGTTG+GGG + Chr3:98799191-98799210 MsG0380017631.01.T01:intron 25.0%
AACAACTAGAATAAGAACAC+CGG - Chr3:98800083-98800102 None:intergenic 30.0%
AACTAAATGCCAATTCAAAC+AGG + Chr3:98798882-98798901 MsG0380017631.01.T01:intron 30.0%
AAGGAGAATATTAAATAGGG+AGG + Chr3:98801191-98801210 MsG0380017631.01.T01:three_prime_UTR 30.0%
AATAATACCATGGCTATGAT+TGG + Chr3:98797708-98797727 MsG0380017631.01.T01:intron 30.0%
ACAATACATTGTTGTATACC+TGG - Chr3:98799786-98799805 None:intergenic 30.0%
AGAAGCTATTGTTCAAAAAC+TGG - Chr3:98798711-98798730 None:intergenic 30.0%
AGGAGAATATTAAATAGGGA+GGG + Chr3:98801192-98801211 MsG0380017631.01.T01:three_prime_UTR 30.0%
ATCACTAACAGCACAAAATT+AGG - Chr3:98798980-98798999 None:intergenic 30.0%
ATGTATTGTCACATACATCA+TGG + Chr3:98799797-98799816 MsG0380017631.01.T01:intron 30.0%
CAATTGTGATTTAGGGATAA+AGG + Chr3:98801172-98801191 MsG0380017631.01.T01:three_prime_UTR 30.0%
CACAAGCAAAGTTATAAATC+AGG - Chr3:98801261-98801280 None:intergenic 30.0%
CACGTAAACATAGTTATGTT+TGG - Chr3:98798083-98798102 None:intergenic 30.0%
CACTTTAGACTATCATTATC+TGG + Chr3:98799238-98799257 MsG0380017631.01.T01:intron 30.0%
CTATCTGTTTATTTCAGCAT+TGG - Chr3:98800108-98800127 None:intergenic 30.0%
CTTTATCCCTAAATCACAAT+TGG - Chr3:98801174-98801193 None:intergenic 30.0%
GGAAATAGAAAGACTAGAAA+AGG + Chr3:98800907-98800926 MsG0380017631.01.T01:CDS 30.0%
GTAGTGATTGGTAAAATTAG+CGG - Chr3:98797959-98797978 None:intergenic 30.0%
GTCAAAGCAAATTCAATTCA+AGG + Chr3:98798485-98798504 MsG0380017631.01.T01:CDS 30.0%
GTTAACTATGCGAAATTATC+AGG + Chr3:98801393-98801412 MsG0380017631.01.T01:three_prime_UTR 30.0%
TAAAACCTAGTATGAGAACT+AGG - Chr3:98798908-98798927 None:intergenic 30.0%
TACAATAGCAGATAGTTGAT+AGG - Chr3:98798058-98798077 None:intergenic 30.0%
TATAACTTTGCTTGTGACAA+TGG + Chr3:98801265-98801284 MsG0380017631.01.T01:three_prime_UTR 30.0%
TATTAGTCACCTTTCAAATC+AGG - Chr3:98799355-98799374 None:intergenic 30.0%
TATTCTTTCCTTGCCTTTAT+AGG + Chr3:98799382-98799401 MsG0380017631.01.T01:intron 30.0%
TGAAATTGGCAAATAGGAAA+TGG - Chr3:98797455-98797474 None:intergenic 30.0%
TGAACTTTGTTGAGAATTTG+AGG + Chr3:98800726-98800745 MsG0380017631.01.T01:intron 30.0%
TGGGAGTTGAATTTCAATTT+GGG - Chr3:98797225-98797244 None:intergenic 30.0%
TGGGATTAGACTAATTACTT+TGG + Chr3:98797618-98797637 MsG0380017631.01.T01:intron 30.0%
TTGGGAGTTGAATTTCAATT+TGG - Chr3:98797226-98797245 None:intergenic 30.0%
TTTAAAGAAAACTGCTTCGA+TGG + Chr3:98799072-98799091 MsG0380017631.01.T01:CDS 30.0%
TTTGTTGAGAATTTGAGGAT+CGG + Chr3:98800731-98800750 MsG0380017631.01.T01:intron 30.0%
! AGTTTTCTTTAAATTGGACC+AGG - Chr3:98799065-98799084 None:intergenic 30.0%
! CGAAGCAGTTTTCTTTAAAT+TGG - Chr3:98799071-98799090 None:intergenic 30.0%
! CGGTTATTTCAATAATACCA+TGG + Chr3:98797698-98797717 MsG0380017631.01.T01:intron 30.0%
! GAAAGAAAACCTGATTTGAA+AGG + Chr3:98799343-98799362 MsG0380017631.01.T01:CDS 30.0%
! GTCTTTAGAAACTAGGATAT+TGG + Chr3:98797598-98797617 MsG0380017631.01.T01:intron 30.0%
! GTTTTCTTTAAATTGGACCA+GGG - Chr3:98799064-98799083 None:intergenic 30.0%
! TGGTTTTCACAACTCAAAAA+TGG + Chr3:98799108-98799127 MsG0380017631.01.T01:CDS 30.0%
! TTGATTTTCATACCTTGTGA+TGG + Chr3:98801228-98801247 MsG0380017631.01.T01:three_prime_UTR 30.0%
! TTTCAGTGTCTTTAGAAACT+AGG + Chr3:98797591-98797610 MsG0380017631.01.T01:intron 30.0%
! TTTGTATCTTGTTGTCCTTT+AGG + Chr3:98800691-98800710 MsG0380017631.01.T01:intron 30.0%
!! ATTTAAGTTTTCCTATGTCC+TGG + Chr3:98800331-98800350 MsG0380017631.01.T01:intron 30.0%
!! TTACTTTGGTGATGTTTATG+TGG + Chr3:98797632-98797651 MsG0380017631.01.T01:intron 30.0%
!! TTTCCATCTTGTTGTTCTTT+AGG + Chr3:98800380-98800399 MsG0380017631.01.T01:intron 30.0%
!!! AAATGGTCTGTTTTTACACT+TGG + Chr3:98799125-98799144 MsG0380017631.01.T01:intron 30.0%
AACAGCACAAAATTAGGCTA+TGG - Chr3:98798974-98798993 None:intergenic 35.0%
ACCGAAAATTCCATATTGCA+GGG - Chr3:98798129-98798148 None:intergenic 35.0%
ACTCGTGAGAGAAACAAAAA+TGG - Chr3:98797791-98797810 None:intergenic 35.0%
ATCGCGATTAATTATTCCTC+TGG + Chr3:98798514-98798533 MsG0380017631.01.T01:intron 35.0%
ATCTAGCCATTTAGTCATTG+TGG + Chr3:98799476-98799495 MsG0380017631.01.T01:intron 35.0%
CATCCTAAAGAACAACAAGA+TGG - Chr3:98800386-98800405 None:intergenic 35.0%
GAATACATAAAATTGGCCCT+TGG - Chr3:98798564-98798583 None:intergenic 35.0%
GACACTGAAACAAAACGATT+TGG - Chr3:98797581-98797600 None:intergenic 35.0%
GAGCTTATAAGCTCAAAATC+TGG - Chr3:98797739-98797758 None:intergenic 35.0%
GGAGAATATTAAATAGGGAG+GGG + Chr3:98801193-98801212 MsG0380017631.01.T01:three_prime_UTR 35.0%
GGAGGATTTCATGTAAACAT+TGG + Chr3:98801033-98801052 MsG0380017631.01.T01:exon 35.0%
GGCAAATAGGAAATGGAATT+AGG - Chr3:98797448-98797467 None:intergenic 35.0%
GGGAGTTGAATTTCAATTTG+GGG - Chr3:98797224-98797243 None:intergenic 35.0%
GTGGTGTCTAATGTACAATA+TGG + Chr3:98799495-98799514 MsG0380017631.01.T01:intron 35.0%
GTGTACCCAATTGTGATTTA+GGG + Chr3:98801165-98801184 MsG0380017631.01.T01:three_prime_UTR 35.0%
GTTGTGATTCAATGATTCTG+CGG + Chr3:98797678-98797697 MsG0380017631.01.T01:intron 35.0%
TAACAGGCTAAACAAAACGA+AGG + Chr3:98799318-98799337 MsG0380017631.01.T01:CDS 35.0%
TAGACACCACAATGACTAAA+TGG - Chr3:98799485-98799504 None:intergenic 35.0%
TCAGCTGAGTCGAATTAAAT+TGG - Chr3:98799524-98799543 None:intergenic 35.0%
TCAGGTATATAACCATCACA+AGG - Chr3:98801243-98801262 None:intergenic 35.0%
TGACATGAGTGAAGGTTTAT+TGG + Chr3:98798445-98798464 MsG0380017631.01.T01:CDS 35.0%
TGTGTACCCAATTGTGATTT+AGG + Chr3:98801164-98801183 MsG0380017631.01.T01:three_prime_UTR 35.0%
TTGTTGAGAATTTGAGGATC+GGG + Chr3:98800732-98800751 MsG0380017631.01.T01:intron 35.0%
! ACTATTGATGACATGAGTGA+AGG + Chr3:98798437-98798456 MsG0380017631.01.T01:CDS 35.0%
! AGCTGATCTTGTTATCTATG+CGG + Chr3:98799538-98799557 MsG0380017631.01.T01:intron 35.0%
! CTAGTCTTTCTATTTCCTCA+CGG - Chr3:98800904-98800923 None:intergenic 35.0%
! TGATTGAATCGGTCTTTTGT+AGG + Chr3:98798358-98798377 MsG0380017631.01.T01:intron 35.0%
! TTATCTTTTCCTCTGTCCTA+AGG + Chr3:98800644-98800663 MsG0380017631.01.T01:intron 35.0%
!! GTTGATAGGCTAGCTTATAA+CGG - Chr3:98798044-98798063 None:intergenic 35.0%
!!! ATCTGGCTTTTGTGCATTTT+AGG + Chr3:98799255-98799274 MsG0380017631.01.T01:intron 35.0%
!!! CAGGCTAGTGATTATTTTAG+AGG + Chr3:98799932-98799951 MsG0380017631.01.T01:intron 35.0%
AAATCTGTACACTTGCATCC+AGG + Chr3:98799765-98799784 MsG0380017631.01.T01:intron 40.0%
AACGAGGAGCTCATCAAATA+CGG + Chr3:98797398-98797417 MsG0380017631.01.T01:CDS 40.0%
AAGAAGACACCATGAACCTT+AGG - Chr3:98800758-98800777 None:intergenic 40.0%
AAGCAAATCATTCCAGGAAG+TGG + Chr3:98801009-98801028 MsG0380017631.01.T01:CDS 40.0%
AGAACTAGGCCTGTTTGAAT+TGG - Chr3:98798894-98798913 None:intergenic 40.0%
AGGAGAAACAATCAGAGCTT+AGG + Chr3:98800927-98800946 MsG0380017631.01.T01:CDS 40.0%
ATAAAATTGGCCCTTGGTCT+TGG - Chr3:98798558-98798577 None:intergenic 40.0%
ATGCAGTTTCAGATTCCAGT+TGG - Chr3:98801114-98801133 None:intergenic 40.0%
CCATGATTAAACAACCCAAC+TGG + Chr3:98801096-98801115 MsG0380017631.01.T01:three_prime_UTR 40.0%
CCGAAAATTCCATATTGCAG+GGG - Chr3:98798128-98798147 None:intergenic 40.0%
CTGAAACTGCATCATTGTCT+TGG + Chr3:98801122-98801141 MsG0380017631.01.T01:three_prime_UTR 40.0%
CTGCATCATTGTCTTGGTTA+AGG + Chr3:98801128-98801147 MsG0380017631.01.T01:three_prime_UTR 40.0%
GACCGAAAATTCCATATTGC+AGG - Chr3:98798130-98798149 None:intergenic 40.0%
GCACAAAATTAGGCTATGGA+AGG - Chr3:98798970-98798989 None:intergenic 40.0%
GCTGAAGACATCTTATCACA+TGG - Chr3:98798386-98798405 None:intergenic 40.0%
GGTTGTGCTTCGAAACAAAT+TGG + Chr3:98800227-98800246 MsG0380017631.01.T01:intron 40.0%
TCCAACAAAGACATTGCTTC+AGG + Chr3:98800986-98801005 MsG0380017631.01.T01:CDS 40.0%
TCCTGAAGCAATGTCTTTGT+TGG - Chr3:98800990-98801009 None:intergenic 40.0%
TCTTCCAGTATAGATCTCGA+GGG + Chr3:98798167-98798186 MsG0380017631.01.T01:intron 40.0%
TCTTGGTTAAGGAAACCAAG+TGG + Chr3:98801139-98801158 MsG0380017631.01.T01:three_prime_UTR 40.0%
TGCAGTTTCAGATTCCAGTT+GGG - Chr3:98801113-98801132 None:intergenic 40.0%
TGTTTATGTGGCTCATGGTT+AGG + Chr3:98797644-98797663 MsG0380017631.01.T01:intron 40.0%
TTCAGGAAGCAAATCATTCC+AGG + Chr3:98801003-98801022 MsG0380017631.01.T01:CDS 40.0%
TTGGCTTATAGACAGATGAC+TGG + Chr3:98801059-98801078 MsG0380017631.01.T01:three_prime_UTR 40.0%
TTGTTTCGAAGCACAACCAT+TGG - Chr3:98800225-98800244 None:intergenic 40.0%
! CCAGTTGGGTTGTTTAATCA+TGG - Chr3:98801099-98801118 None:intergenic 40.0%
! CCCCTGCAATATGGAATTTT+CGG + Chr3:98798125-98798144 MsG0380017631.01.T01:intron 40.0%
! GCTGATCTTGTTATCTATGC+GGG + Chr3:98799539-98799558 MsG0380017631.01.T01:intron 40.0%
! TAAAATTGGCCCTTGGTCTT+GGG - Chr3:98798557-98798576 None:intergenic 40.0%
! TTGATGTTGTTTACACTCCC+TGG + Chr3:98799044-98799063 MsG0380017631.01.T01:CDS 40.0%
!! GAGTTTTAACCCCTGCAATA+TGG + Chr3:98798116-98798135 MsG0380017631.01.T01:intron 40.0%
!! TCTGAAAGGCTAAGAGCATT+TGG + Chr3:98798626-98798645 MsG0380017631.01.T01:intron 40.0%
!!! GAATTTTAGAATCCAGCCCA+AGG + Chr3:98800428-98800447 MsG0380017631.01.T01:intron 40.0%
!!! TTTTTTTGCAGTAGTTGGGG+TGG + Chr3:98799194-98799213 MsG0380017631.01.T01:intron 40.0%
AAAACTGCTTCGATGGACGT+TGG + Chr3:98799079-98799098 MsG0380017631.01.T01:CDS 45.0%
AAAGAAGACACCGTGAACCT+TGG - Chr3:98800448-98800467 None:intergenic 45.0%
AAGAAGACACCGTGAACCTT+GGG - Chr3:98800447-98800466 None:intergenic 45.0%
AAGTACTCAAGCAGTGCCTT+AGG - Chr3:98800663-98800682 None:intergenic 45.0%
AATTGGGTACACACACCACT+TGG - Chr3:98801157-98801176 None:intergenic 45.0%
ACATGGCAGGTAAAAGACAG+CGG - Chr3:98800276-98800295 None:intergenic 45.0%
ACGGTTTCATCGAAGACATC+TGG + Chr3:98797417-98797436 MsG0380017631.01.T01:CDS 45.0%
ATCAGAGCTTAGGAGCTACA+AGG + Chr3:98800937-98800956 MsG0380017631.01.T01:CDS 45.0%
CAAATCATTCCAGGAAGTGG+AGG + Chr3:98801012-98801031 MsG0380017631.01.T01:CDS 45.0%
CAGGCTAAACAAAACGAAGG+TGG + Chr3:98799321-98799340 MsG0380017631.01.T01:CDS 45.0%
CTCTTCCAGTATAGATCTCG+AGG + Chr3:98798166-98798185 MsG0380017631.01.T01:intron 45.0%
CTGCTATGTTGCATTCTCCT+CGG + Chr3:98800597-98800616 MsG0380017631.01.T01:intron 45.0%
CTTAGTTGACCCAAGACCAA+GGG + Chr3:98798545-98798564 MsG0380017631.01.T01:intron 45.0%
CTTCAGCCCATGTTTATGTC+AGG + Chr3:98798399-98798418 MsG0380017631.01.T01:intron 45.0%
CTTCCAGTATAGATCTCGAG+GGG + Chr3:98798168-98798187 MsG0380017631.01.T01:intron 45.0%
CTTGTCAAGACCCATGAAGA+TGG - Chr3:98797372-98797391 None:intergenic 45.0%
GCCATGTTGCATTCTCTTCA+GGG + Chr3:98800289-98800308 MsG0380017631.01.T01:intron 45.0%
GCTTATAGACAGATGACTGG+TGG + Chr3:98801062-98801081 MsG0380017631.01.T01:three_prime_UTR 45.0%
GGCGATTACACCATCTTCAT+GGG + Chr3:98797359-98797378 MsG0380017631.01.T01:CDS 45.0%
GGTGATGTTTATGTGGCTCA+TGG + Chr3:98797639-98797658 MsG0380017631.01.T01:intron 45.0%
GTGCAGCCTGACATAAACAT+GGG - Chr3:98798408-98798427 None:intergenic 45.0%
GTTTATGTCAGGCTGCACAA+AGG + Chr3:98798410-98798429 MsG0380017631.01.T01:intron 45.0%
TAGGAGCTACAAGGGTTTGA+TGG + Chr3:98800946-98800965 MsG0380017631.01.T01:CDS 45.0%
TAGTAGACAATTATGCCCCG+AGG - Chr3:98800617-98800636 None:intergenic 45.0%
TCAGAGCTTAGGAGCTACAA+GGG + Chr3:98800938-98800957 MsG0380017631.01.T01:CDS 45.0%
TCTTGACAAGTTCGAGAACG+AGG + Chr3:98797382-98797401 MsG0380017631.01.T01:CDS 45.0%
TGAAGAGAATGCAACATGGC+AGG - Chr3:98800289-98800308 None:intergenic 45.0%
TGCCATGTTGCATTCTCTTC+AGG + Chr3:98800288-98800307 MsG0380017631.01.T01:intron 45.0%
TGCTATGTTGCATTCTCCTC+GGG + Chr3:98800598-98800617 MsG0380017631.01.T01:intron 45.0%
TGGCGATTACACCATCTTCA+TGG + Chr3:98797358-98797377 MsG0380017631.01.T01:CDS 45.0%
TGTGCAGCCTGACATAAACA+TGG - Chr3:98798409-98798428 None:intergenic 45.0%
! ACAGGCCTAGTTCTCATACT+AGG + Chr3:98798900-98798919 MsG0380017631.01.T01:intron 45.0%
!! TGAGTCTTGTTAGGCTTGTC+AGG + Chr3:98801345-98801364 MsG0380017631.01.T01:three_prime_UTR 45.0%
!! TGGGTTAGGGTTCTGAGTTT+GGG - Chr3:98797244-98797263 None:intergenic 45.0%
!! TTGGGTTAGGGTTCTGAGTT+TGG - Chr3:98797245-98797264 None:intergenic 45.0%
!! TTGGTCTTGGGTCAACTAAG+CGG - Chr3:98798545-98798564 None:intergenic 45.0%
AAGAACTCAAGCAGTGCACC+AGG - Chr3:98800352-98800371 None:intergenic 50.0%
AAGCCCCTCGAGATCTATAC+TGG - Chr3:98798174-98798193 None:intergenic 50.0%
AGAATCCAGCCCAAGGTTCA+CGG + Chr3:98800435-98800454 MsG0380017631.01.T01:intron 50.0%
ATCATTCCAGGAAGTGGAGG+AGG + Chr3:98801015-98801034 MsG0380017631.01.T01:CDS 50.0%
ATGGTGTAATCGCCAGCTTC+AGG - Chr3:98797353-98797372 None:intergenic 50.0%
CAACTAAGCGGATAGACCAG+AGG - Chr3:98798533-98798552 None:intergenic 50.0%
GAATTTGAGGATCGGGCCTA+AGG + Chr3:98800739-98800758 MsG0380017631.01.T01:intron 50.0%
GCCCTGAAGAGAATGCAACA+TGG - Chr3:98800293-98800312 None:intergenic 50.0%
GCTATGTTGCATTCTCCTCG+GGG + Chr3:98800599-98800618 MsG0380017631.01.T01:intron 50.0%
GCTTAGTTGACCCAAGACCA+AGG + Chr3:98798544-98798563 MsG0380017631.01.T01:intron 50.0%
GGCATTGCCAATCATAGCCA+TGG - Chr3:98797718-98797737 None:intergenic 50.0%
TCGATGGACGTTGGTCAAGT+TGG + Chr3:98799088-98799107 MsG0380017631.01.T01:CDS 50.0%
TGAAATCCTCCTCCACTTCC+TGG - Chr3:98801024-98801043 None:intergenic 50.0%
TGGTGTAATCGCCAGCTTCA+GGG - Chr3:98797352-98797371 None:intergenic 50.0%
TTAGGTGCGAACTGTGAGAG+TGG + Chr3:98799273-98799292 MsG0380017631.01.T01:intron 50.0%
AGGATCGGGCCTAAGGTTCA+TGG + Chr3:98800746-98800765 MsG0380017631.01.T01:intron 55.0%
CAAGCAGTGCACCAGGACAT+AGG - Chr3:98800345-98800364 None:intergenic 55.0%
CAAGCAGTGCCTTAGGACAG+AGG - Chr3:98800656-98800675 None:intergenic 55.0%
CTGCTGCTGAAAGAGCTGAG+AGG + Chr3:98799594-98799613 MsG0380017631.01.T01:CDS 55.0%
TTCAAAGCACGCCCTGAAGC+TGG + Chr3:98797338-98797357 MsG0380017631.01.T01:CDS 55.0%
TTGCAGTAGTTGGGGTGGCT+GGG + Chr3:98799199-98799218 MsG0380017631.01.T01:intron 55.0%
TTTGCAGTAGTTGGGGTGGC+TGG + Chr3:98799198-98799217 MsG0380017631.01.T01:intron 55.0%
! ACGAGAGAGGGAAGTGCGTT+GGG - Chr3:98797263-98797282 None:intergenic 55.0%
! AGAGGGAAGTGCGTTGGGTT+AGG - Chr3:98797258-98797277 None:intergenic 55.0%
! GAGGGAAGTGCGTTGGGTTA+GGG - Chr3:98797257-98797276 None:intergenic 55.0%
AGACACCGTGAACCTTGGGC+TGG - Chr3:98800443-98800462 None:intergenic 60.0%
! CACGAGAGAGGGAAGTGCGT+TGG - Chr3:98797264-98797283 None:intergenic 60.0%
! CTCGAGGGGCTTGCTCTTTC+TGG + Chr3:98798182-98798201 MsG0380017631.01.T01:intron 60.0%
CACGCACGCAGCACGAGAGA+GGG - Chr3:98797275-98797294 None:intergenic 65.0%
!! CTGTGTGCAGAAGCGCCGTG+AGG + Chr3:98800886-98800905 MsG0380017631.01.T01:intron 65.0%
GCACGCACGCAGCACGAGAG+AGG - Chr3:98797276-98797295 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98797165 98801440 98797165 ID=MsG0380017631.01;Name=MsG0380017631.01
Chr3 mRNA 98797165 98801440 98797165 ID=MsG0380017631.01.T01;Parent=MsG0380017631.01;Name=MsG0380017631.01.T01;_AED=0.47;_eAED=0.48;_QI=161|0.6|0.66|1|1|1|6|392|213
Chr3 exon 98797165 98797438 98797165 ID=MsG0380017631.01.T01:exon:12834;Parent=MsG0380017631.01.T01
Chr3 exon 98798421 98798506 98798421 ID=MsG0380017631.01.T01:exon:12835;Parent=MsG0380017631.01.T01
Chr3 exon 98799026 98799129 98799026 ID=MsG0380017631.01.T01:exon:12836;Parent=MsG0380017631.01.T01
Chr3 exon 98799277 98799364 98799277 ID=MsG0380017631.01.T01:exon:12837;Parent=MsG0380017631.01.T01
Chr3 exon 98799540 98799637 98799540 ID=MsG0380017631.01.T01:exon:12838;Parent=MsG0380017631.01.T01
Chr3 exon 98800896 98801440 98800896 ID=MsG0380017631.01.T01:exon:12839;Parent=MsG0380017631.01.T01
Chr3 five_prime_UTR 98797165 98797325 98797165 ID=MsG0380017631.01.T01:five_prime_utr;Parent=MsG0380017631.01.T01
Chr3 CDS 98797326 98797438 98797326 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 CDS 98798421 98798506 98798421 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 CDS 98799026 98799129 98799026 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 CDS 98799277 98799364 98799277 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 CDS 98799540 98799637 98799540 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 CDS 98800896 98801048 98800896 ID=MsG0380017631.01.T01:cds;Parent=MsG0380017631.01.T01
Chr3 three_prime_UTR 98801049 98801440 98801049 ID=MsG0380017631.01.T01:three_prime_utr;Parent=MsG0380017631.01.T01
Gene Sequence

>MsG0380017631.01.T01

ATGGTGTTCTACTTCAAAGCACGCCCTGAAGCTGGCGATTACACCATCTTCATGGGTCTTGACAAGTTCGAGAACGAGGAGCTCATCAAATACGGTTTCATCGAAGACATCTGGCTGCACAAAGGTCAAACTATTGATGACATGAGTGAAGGTTTATTGGAAGACTGTGCTCAACTTGTCAAAGCAAATTCAATTCAAGGGAATAAAGTAAACAACGTTGATGTTGTTTACACTCCCTGGTCCAATTTAAAGAAAACTGCTTCGATGGACGTTGGTCAAGTTGGTTTTCACAACTCAAAAATGGTGCGAACTGTGAGAGTGGAGAAGAAGATAAATGAGATTGTTAACAGGCTAAACAAAACGAAGGTGGAAAGAAAACCTGATTTGAAAGCTGATCTTGTTATCTATGCGGGTATGTGTTCTGCAGCTGAGCGAGAAGCAATTGCTGCTGCTGAAAGAGCTGAGAGGAAACATCAACTGAGAGAAAAAAAGCGCCGTGAGGAAATAGAAAGACTAGAAAAGGAGAAACAATCAGAGCTTAGGAGCTACAAGGGTTTGATGGTCGCAGAAAATATGACATCCAACAAAGACATTGCTTCAGGAAGCAAATCATTCCAGGAAGTGGAGGAGGATTTCATGTAA

Protein sequence

>MsG0380017631.01.T01

MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFIEDIWLHKGQTIDDMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKKINEIVNRLNKTKVERKPDLKADLVIYAGMCSAAEREAIAAAERAERKHQLREKKRREEIERLEKEKQSELRSYKGLMVAENMTSNKDIASGSKSFQEVEEDFM*