AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029629.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029629.01.T01 MTR_5g089870 98.155 542 10 0 14 555 3 544 0.0 1105
MsG0580029629.01.T01 MTR_3g045830 55.920 549 189 8 14 554 3 506 0.0 542
MsG0580029629.01.T01 MTR_4g088375 53.571 56 26 0 31 86 33 88 4.97e-13 72.8
MsG0580029629.01.T01 MTR_4g088375 53.571 56 26 0 31 86 33 88 4.99e-13 72.8
MsG0580029629.01.T01 MTR_4g088375 53.571 56 26 0 31 86 33 88 5.08e-13 72.8
MsG0580029629.01.T01 MTR_2g014490 51.724 58 28 0 31 88 42 99 1.72e-12 71.2
MsG0580029629.01.T01 MTR_2g014490 51.724 58 28 0 31 88 42 99 1.76e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029629.01.T01 AT4G03250 39.432 563 261 17 14 555 4 507 3.02e-84 271
MsG0580029629.01.T01 AT1G28420 55.357 56 25 0 31 86 41 96 1.88e-14 77.4

Find 133 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACAGGATGAGTTGTTTA+AGG 0.209194 5:+99885963 MsG0580029629.01.T01:intron
CTTCCAAACATGGACTAAAT+TGG 0.226621 5:-99887308 None:intergenic
ACACTCCTTTGCACATTCTT+TGG 0.238382 5:-99885698 None:intergenic
TTGACAGAAAAGCAAGTTTC+TGG 0.241531 5:+99882723 MsG0580029629.01.T01:CDS
TCACTCCTTTGCGCTTTCTT+TGG 0.251232 5:-99885761 None:intergenic
GATTGCACCTTTCGGATTTA+AGG 0.253961 5:-99883120 None:intergenic
CCGTTGCTCTCAACCTCTTT+AGG 0.296329 5:-99882909 None:intergenic
AAGAAAGAGGGCTATCTTCT+AGG 0.323284 5:+99885843 MsG0580029629.01.T01:CDS
CAGGATCGTGGCAGTGGACT+TGG 0.326571 5:+99882837 MsG0580029629.01.T01:CDS
GTTGCATGATGTTCATGTTC+AGG 0.329068 5:+99885400 MsG0580029629.01.T01:CDS
CTGAAAAGTTTGTCTATGTT+TGG 0.340704 5:-99885453 None:intergenic
CAAAACGCCTGCACAGCTTA+AGG 0.344150 5:+99882548 MsG0580029629.01.T01:CDS
ACTGCTGTTAAGAAGCAATT+AGG 0.344355 5:+99883206 MsG0580029629.01.T01:CDS
CACATGCAATTTACTAGTTA+AGG 0.352181 5:+99887056 MsG0580029629.01.T01:three_prime_UTR
GAACTAAACTTCTTGCTTCT+CGG 0.354275 5:+99882450 MsG0580029629.01.T01:CDS
CCCATGTTGATTGCACCTTT+CGG 0.370330 5:-99883128 None:intergenic
CTCCTTCCATATGAGTATCT+TGG 0.372564 5:-99885364 None:intergenic
GGAACCTGTTTCATATTGTA+TGG 0.374331 5:-99886208 None:intergenic
GATCCAATTTAGTCCATGTT+TGG 0.379275 5:+99887305 MsG0580029629.01.T01:three_prime_UTR
CCTTTGCACATTCTTTGGAT+TGG 0.379454 5:-99885693 None:intergenic
GCATGGTGATTATAAGTATC+TGG 0.393909 5:+99882884 MsG0580029629.01.T01:CDS
CATGAACTGCGTCTTCAGTT+TGG 0.394238 5:-99883301 None:intergenic
GCAATTAGGAAGGAATTATC+AGG 0.404766 5:+99883220 MsG0580029629.01.T01:CDS
CAATCAATCCAGTGAGGAAC+TGG 0.405732 5:-99886991 None:intergenic
TCCTTCCATATGAGTATCTT+GGG 0.407012 5:-99885363 None:intergenic
GCCTGCACAGCTTAAGGGCT+TGG 0.407132 5:+99882554 MsG0580029629.01.T01:CDS
TATCGTGATGCAGGTGGAGC+AGG 0.408220 5:+99886009 MsG0580029629.01.T01:CDS
CAAACTGAAGACGCAGTTCA+TGG 0.411080 5:+99883302 MsG0580029629.01.T01:CDS
AGAGTCTTCATACAAATCTA+AGG 0.411845 5:-99885510 None:intergenic
AAAACGCCTGCACAGCTTAA+GGG 0.413028 5:+99882549 MsG0580029629.01.T01:CDS
GCTCACCTCTGAGCTTTCCT+TGG 0.413393 5:-99886247 None:intergenic
CTAGAAGGCTCCATCTCATA+TGG 0.414116 5:-99883077 None:intergenic
CTTGGTTCTATCTCAGCAAC+AGG 0.414880 5:-99886229 None:intergenic
ATTGCACCTTTCGGATTTAA+GGG 0.420903 5:-99883119 None:intergenic
AAAGAAGAAGCAAATGCTAA+TGG 0.421245 5:+99882786 MsG0580029629.01.T01:CDS
TCTAGATTGACATGAATATG+AGG 0.425411 5:-99887387 None:intergenic
TCAACCATACAATATGAAAC+AGG 0.427437 5:+99886204 MsG0580029629.01.T01:CDS
CAAGTCCACTGCCACGATCC+TGG 0.429748 5:-99882836 None:intergenic
GATGCTTTCAAATGAGACTA+TGG 0.432046 5:+99886032 MsG0580029629.01.T01:CDS
GAAGAGCAGGATCAGCAATA+TGG 0.436376 5:-99884852 None:intergenic
GTACAGGATGAGTTGTTTAA+GGG 0.451788 5:+99885964 MsG0580029629.01.T01:intron
CAGGAAGATGGTCCACTACT+TGG 0.459717 5:+99883239 MsG0580029629.01.T01:CDS
GCTCCATCTCATATGGATCT+TGG 0.461565 5:-99883070 None:intergenic
CATATGGAAGGAGTTGACTT+TGG 0.462273 5:+99885374 MsG0580029629.01.T01:CDS
TTTGTCTATGTTTGGTACCA+TGG 0.463442 5:-99885445 None:intergenic
TCAAATGCCCCTGGAGGAAG+TGG 0.466413 5:-99883275 None:intergenic
AGGAAGTCTGCATGTTTGAC+TGG 0.467186 5:-99885650 None:intergenic
TCCAAGCCCTTAAGCTGTGC+AGG 0.467500 5:-99882555 None:intergenic
GGATGCCAAGCGCGGTGTTG+AGG 0.467670 5:+99885574 MsG0580029629.01.T01:CDS
TTTCTTCATAGCGATCACTA+TGG 0.468844 5:-99885622 None:intergenic
AGAGCTTTACTATATCTAGA+AGG 0.474291 5:-99883092 None:intergenic
AAGAAGAAGCAAATGCTAAT+GGG 0.480312 5:+99882787 MsG0580029629.01.T01:CDS
GCTAATTTCAATTCCTCTGT+CGG 0.480787 5:-99882681 None:intergenic
TGACAGAAAAGCAAGTTTCT+GGG 0.481471 5:+99882724 MsG0580029629.01.T01:CDS
TCTGGAGAATTCAGAAGAGC+AGG 0.481510 5:-99884865 None:intergenic
GTCATCCAGGATCGTGGCAG+TGG 0.484263 5:+99882831 MsG0580029629.01.T01:CDS
GATTTGTATGAAGACTCTAC+TGG 0.484462 5:+99885515 MsG0580029629.01.T01:CDS
GATGCCAAGCGCGGTGTTGA+GGG 0.484892 5:+99885575 MsG0580029629.01.T01:CDS
GAATTTGATCCACTTCCTCC+AGG 0.485743 5:+99883266 MsG0580029629.01.T01:CDS
GTTTGGCATTCAAATGCCCC+TGG 0.490524 5:-99883284 None:intergenic
TGCTGATACCAGTTCCTCAC+TGG 0.497663 5:+99886983 MsG0580029629.01.T01:CDS
TAAACTTCTTGCTTCTCGGT+TGG 0.504799 5:+99882454 MsG0580029629.01.T01:CDS
TGGTTCCCAAGATACTCATA+TGG 0.513127 5:+99885358 MsG0580029629.01.T01:CDS
AACATGGGATATAAACCATC+GGG 0.519479 5:+99883143 MsG0580029629.01.T01:CDS
CATACCCTCAACACCGCGCT+TGG 0.522849 5:-99885579 None:intergenic
TCGTTCAAGTGGTGTCATCC+AGG 0.523322 5:+99882818 MsG0580029629.01.T01:CDS
TCTAAGGAAGAGTTCCTGCC+AGG 0.525417 5:-99885494 None:intergenic
TTCTGAAAATGTCAGTGGAA+TGG 0.528577 5:+99882989 MsG0580029629.01.T01:CDS
GAATTGTGGATTGAGTTTGA+AGG 0.540955 5:-99885800 None:intergenic
ATCGGGATATTTGAAAGTGA+AGG 0.542663 5:+99883160 MsG0580029629.01.T01:CDS
GCAGGATCAGCAATATGGTA+TGG 0.543728 5:-99884847 None:intergenic
CATCACTAAGAATCATAAGA+AGG 0.545103 5:+99885553 MsG0580029629.01.T01:CDS
GCTATCTTCTAGGATGACTA+AGG 0.550617 5:+99885853 MsG0580029629.01.T01:CDS
AGGATCGTGGCAGTGGACTT+GGG 0.551473 5:+99882838 MsG0580029629.01.T01:CDS
TAAGTATCTGGATCCTAAAG+AGG 0.555927 5:+99882896 MsG0580029629.01.T01:CDS
GGAAGGAATTATCAGGAAGA+TGG 0.556235 5:+99883227 MsG0580029629.01.T01:CDS
CCACAGAACCTCGAGAATTG+TGG 0.558056 5:-99885814 None:intergenic
TCATATGGATCTTGGCCTTG+AGG 0.561124 5:-99883062 None:intergenic
CCACAATTCTCGAGGTTCTG+TGG 0.566754 5:+99885814 MsG0580029629.01.T01:CDS
TTCACTTTCAAATATCCCGA+TGG 0.569594 5:-99883158 None:intergenic
ATCGTGATGCAGGTGGAGCA+GGG 0.576443 5:+99886010 MsG0580029629.01.T01:CDS
CAACATGGGATATAAACCAT+CGG 0.579239 5:+99883142 MsG0580029629.01.T01:CDS
AGGCCAAGATCCATATGAGA+TGG 0.579497 5:+99883067 MsG0580029629.01.T01:CDS
TCCGAAAGGTGCAATCAACA+TGG 0.580879 5:+99883127 MsG0580029629.01.T01:CDS
TCTGTTGCAGATGTGACGTA+TGG 0.582357 5:+99882951 MsG0580029629.01.T01:CDS
GATTCATATTATACTAAACA+TGG 0.583805 5:+99885338 MsG0580029629.01.T01:CDS
AGTTAAGGCAGTAGTAACAT+TGG 0.585447 5:+99887071 MsG0580029629.01.T01:three_prime_UTR
GTATCTAACTCTTCCAAACA+TGG 0.585852 5:-99887318 None:intergenic
AATTTGATCCACTTCCTCCA+GGG 0.587189 5:+99883267 MsG0580029629.01.T01:CDS
CTACTTACAGAGCTAAGACC+AGG 0.590912 5:-99884910 None:intergenic
TCCCAAGATACTCATATGGA+AGG 0.591524 5:+99885362 MsG0580029629.01.T01:CDS
AACTCAATCCACAATTCTCG+AGG 0.592657 5:+99885806 MsG0580029629.01.T01:CDS
CAAGATAAGAAAGCTTTCCA+TGG 0.592693 5:+99885428 MsG0580029629.01.T01:CDS
TACAGGATGAGTTGTTTAAG+GGG 0.596582 5:+99885965 MsG0580029629.01.T01:intron
TCGGGATATTTGAAAGTGAA+GGG 0.597023 5:+99883161 MsG0580029629.01.T01:CDS
AGTCTGCATGTTTGACTGGG+AGG 0.604885 5:-99885646 None:intergenic
CTAGATTGACATGAATATGA+GGG 0.607282 5:-99887386 None:intergenic
TCGTGCGGAAGCAGTAAGCA+TGG 0.609438 5:+99882867 MsG0580029629.01.T01:CDS
ATTTGATCCACTTCCTCCAG+GGG 0.610594 5:+99883268 MsG0580029629.01.T01:CDS
TCATCCTCGCTAAAGCTAGA+CGG 0.613881 5:-99886957 None:intergenic
CTGTGGATACTGAAGAAAGA+GGG 0.615063 5:+99885831 MsG0580029629.01.T01:CDS
TCCACAGTGAAAAGTCGACC+TGG 0.615507 5:+99884892 MsG0580029629.01.T01:CDS
GTTCCTGCCAGGAAAACGAC+TGG 0.617478 5:-99885483 None:intergenic
AAGCAATATCGTGATGCAGG+TGG 0.619203 5:+99886003 MsG0580029629.01.T01:CDS
TCAAATTCTACACCAAGTAG+TGG 0.621557 5:-99883251 None:intergenic
CAAGAACGTATGTATCCTCA+AGG 0.624443 5:+99883047 MsG0580029629.01.T01:CDS
CCTAAAGAGGTTGAGAGCAA+CGG 0.628717 5:+99882909 MsG0580029629.01.T01:CDS
ATTGAAATTAGCAATTGCTG+AGG 0.629418 5:+99882692 MsG0580029629.01.T01:CDS
GGAAGTCTGCATGTTTGACT+GGG 0.632535 5:-99885649 None:intergenic
CAGAAAAGCAAGTTTCTGGG+TGG 0.634139 5:+99882727 MsG0580029629.01.T01:CDS
CAGATGTGACGTATGGACGC+AGG 0.634541 5:+99882958 MsG0580029629.01.T01:CDS
CTTCCACCCTTAAATCCGAA+AGG 0.637927 5:+99883113 MsG0580029629.01.T01:CDS
GGGCGACAAGATCGTTCAAG+TGG 0.643385 5:+99882807 MsG0580029629.01.T01:CDS
AGTGGTGTCATCCAGGATCG+TGG 0.644469 5:+99882825 MsG0580029629.01.T01:CDS
AAAATCAAAAGACCTAGTGG+GGG 0.645462 5:-99887195 None:intergenic
CTGTTAAGAAGCAATTAGGA+AGG 0.648535 5:+99883210 MsG0580029629.01.T01:CDS
CAGACAAATCACGATTGTAG+AGG 0.656746 5:-99882932 None:intergenic
TCTGTGGATACTGAAGAAAG+AGG 0.660423 5:+99885830 MsG0580029629.01.T01:CDS
CCGAAAGGTGCAATCAACAT+GGG 0.662695 5:+99883128 MsG0580029629.01.T01:CDS
CCAATCCAAAGAATGTGCAA+AGG 0.663942 5:+99885693 MsG0580029629.01.T01:CDS
TGGCATTCAAATGCCCCTGG+AGG 0.673262 5:-99883281 None:intergenic
GCACCTTTCGGATTTAAGGG+TGG 0.674376 5:-99883116 None:intergenic
TAGAACCAAGGAAAGCTCAG+AGG 0.675746 5:+99886242 MsG0580029629.01.T01:CDS
CATAAGAAGGATGCCAAGCG+CGG 0.680844 5:+99885566 MsG0580029629.01.T01:CDS
TCAATCCAAAGAAAGCGCAA+AGG 0.687671 5:+99885756 MsG0580029629.01.T01:CDS
GGACTTGGGCAAGATTCGTG+CGG 0.690813 5:+99882852 MsG0580029629.01.T01:CDS
AAATCAAAAGACCTAGTGGG+GGG 0.693291 5:-99887194 None:intergenic
ACAGGATGAGTTGTTTAAGG+GGG 0.696588 5:+99885966 MsG0580029629.01.T01:intron
AGAGCACAAATATCCGACAG+AGG 0.722247 5:+99882668 MsG0580029629.01.T01:intron
GATGCCGTCTAGCTTTAGCG+AGG 0.724075 5:+99886953 MsG0580029629.01.T01:CDS
AGAAGAAAATAAAGTCTCCG+CGG 0.726053 5:+99882503 MsG0580029629.01.T01:CDS
ACAAAACAATCAATCCAGTG+AGG 0.737591 5:-99886997 None:intergenic
CTGTTGCTGAGATAGAACCA+AGG 0.743299 5:+99886230 MsG0580029629.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAATAATTTAAATGTC+TGG - Chr5:99883789-99883808 None:intergenic 15.0%
!!! GTCTTTTGATTTTTATTTTT+GGG + Chr5:99887205-99887224 MsG0580029629.01.T01:three_prime_UTR 15.0%
!!! GTTAATATATTTTATCCAAA+GGG + Chr5:99882608-99882627 MsG0580029629.01.T01:intron 15.0%
!!! TGTTAATATATTTTATCCAA+AGG + Chr5:99882607-99882626 MsG0580029629.01.T01:intron 15.0%
!!! TTAATTAGTTTCCTTAAAAT+CGG + Chr5:99884204-99884223 MsG0580029629.01.T01:intron 15.0%
!!! TTTAATTTTTCAAAACTGTA+AGG + Chr5:99883868-99883887 MsG0580029629.01.T01:intron 15.0%
!!! TTTTTTTTGTAGTTTAATTG+TGG + Chr5:99887259-99887278 MsG0580029629.01.T01:three_prime_UTR 15.0%
!! AATTAAATGACTTGAAACAA+TGG - Chr5:99885156-99885175 None:intergenic 20.0%
!! AATTACTATGAGTACTTATA+TGG - Chr5:99885218-99885237 None:intergenic 20.0%
!! ACATATAAATAGACAGATTT+AGG + Chr5:99883988-99884007 MsG0580029629.01.T01:intron 20.0%
!! AGTTGTATAACATAAATGAA+TGG - Chr5:99884115-99884134 None:intergenic 20.0%
!! ATGATGCTATTCTTAAAATT+TGG + Chr5:99884364-99884383 MsG0580029629.01.T01:intron 20.0%
!! ATTCATTTATGTTATACAAC+TGG + Chr5:99884114-99884133 MsG0580029629.01.T01:intron 20.0%
!! CTTATCAAGTTAATTATCAT+TGG - Chr5:99883679-99883698 None:intergenic 20.0%
!! GATTCATATTATACTAAACA+TGG + Chr5:99885338-99885357 MsG0580029629.01.T01:CDS 20.0%
!! TTTCACATAACTAATAGAAT+GGG - Chr5:99883363-99883382 None:intergenic 20.0%
!!! CAATGATAATTAACTTGATA+AGG + Chr5:99883677-99883696 MsG0580029629.01.T01:intron 20.0%
!!! GAAATATTTCTAGAAAAACA+TGG - Chr5:99884699-99884718 None:intergenic 20.0%
!!! GGTCTTTTGATTTTTATTTT+TGG + Chr5:99887204-99887223 MsG0580029629.01.T01:three_prime_UTR 20.0%
!!! TGTTTTCATAGTTATATTGT+AGG - Chr5:99885673-99885692 None:intergenic 20.0%
!!! TTCTTTTCACATATGATTTA+GGG + Chr5:99883736-99883755 MsG0580029629.01.T01:intron 20.0%
! AAAATGAGAATGCATTAGAA+AGG - Chr5:99884937-99884956 None:intergenic 25.0%
! AAAATTAAATGCAGCTGAAA+TGG + Chr5:99885038-99885057 MsG0580029629.01.T01:intron 25.0%
! AATGTTCAATAGTAAGCTTT+CGG + Chr5:99886391-99886410 MsG0580029629.01.T01:intron 25.0%
! AGAATAATAATCTTTGTGCA+AGG + Chr5:99884628-99884647 MsG0580029629.01.T01:intron 25.0%
! AGAGCAAAAATAAGTTATCT+TGG - Chr5:99884674-99884693 None:intergenic 25.0%
! AGGTATTAGCATTAGAATAT+AGG + Chr5:99884261-99884280 MsG0580029629.01.T01:intron 25.0%
! ATAAAAATCAAAAGACCTAG+TGG - Chr5:99887201-99887220 None:intergenic 25.0%
! ATAAATAGACAGATTTAGGT+AGG + Chr5:99883992-99884011 MsG0580029629.01.T01:intron 25.0%
! ATCTTCATTAAAGAGGAAAA+AGG - Chr5:99886467-99886486 None:intergenic 25.0%
! CAACAACTATATTAGAATCT+GGG + Chr5:99884483-99884502 MsG0580029629.01.T01:intron 25.0%
! CAATTTATTCTGCTTACAAA+TGG + Chr5:99885913-99885932 MsG0580029629.01.T01:intron 25.0%
! CATCACATTGTAAAATTGTT+AGG + Chr5:99883455-99883474 MsG0580029629.01.T01:intron 25.0%
! GAAATATTTCATTGTAGCTA+AGG + Chr5:99884709-99884728 MsG0580029629.01.T01:intron 25.0%
! GAATTAGTATTTGTTTGATC+TGG + Chr5:99883944-99883963 MsG0580029629.01.T01:intron 25.0%
! GTTTCACATAACTAATAGAA+TGG - Chr5:99883364-99883383 None:intergenic 25.0%
! TAAAAATCAAAAGACCTAGT+GGG - Chr5:99887200-99887219 None:intergenic 25.0%
! TAACATAAATGAATGGTCAA+AGG - Chr5:99884108-99884127 None:intergenic 25.0%
! TAATAAATTGAGCTGCAAAA+AGG - Chr5:99883905-99883924 None:intergenic 25.0%
! TCAACAACTATATTAGAATC+TGG + Chr5:99884482-99884501 MsG0580029629.01.T01:intron 25.0%
! TCTTAGTATTAATACTACCA+AGG + Chr5:99883653-99883672 MsG0580029629.01.T01:intron 25.0%
! TTCTTACCTTTGTATTGTTA+TGG + Chr5:99884810-99884829 MsG0580029629.01.T01:intron 25.0%
!! ATAATCACATTCTAGAGATA+CGG - Chr5:99886082-99886101 None:intergenic 25.0%
!! ATCTTTTATCCTTTAACCTT+CGG - Chr5:99882761-99882780 None:intergenic 25.0%
!! CTTCTTTTCACATATGATTT+AGG + Chr5:99883735-99883754 MsG0580029629.01.T01:intron 25.0%
!! GTGAAACTAAAATGTTGTTT+AGG + Chr5:99883377-99883396 MsG0580029629.01.T01:intron 25.0%
!! TTGCAAGAGAAACTTTTAAA+CGG + Chr5:99885174-99885193 MsG0580029629.01.T01:intron 25.0%
!! TTGCCTTTGAAAAAAGAAAT+TGG + Chr5:99887158-99887177 MsG0580029629.01.T01:three_prime_UTR 25.0%
!! TTTATCTAGTCCATATTTTG+AGG + Chr5:99884171-99884190 MsG0580029629.01.T01:intron 25.0%
!!! ACACCAATTTCTTTTTTCAA+AGG - Chr5:99887164-99887183 None:intergenic 25.0%
!!! TCTTCTTACTTAGTTTTTAC+TGG + Chr5:99886871-99886890 MsG0580029629.01.T01:intron 25.0%
!!! TTATCTAGTCCATATTTTGA+GGG + Chr5:99884172-99884191 MsG0580029629.01.T01:intron 25.0%
!!! TTTCTTTTTTCAAAGGCAAT+AGG - Chr5:99887157-99887176 None:intergenic 25.0%
AAAAATCAAAAGACCTAGTG+GGG - Chr5:99887199-99887218 None:intergenic 30.0%
AAAGAAGAAGCAAATGCTAA+TGG + Chr5:99882786-99882805 MsG0580029629.01.T01:CDS 30.0%
AACAATATGGCTGATCATTT+AGG + Chr5:99883412-99883431 MsG0580029629.01.T01:intron 30.0%
AACCCAAAAAGGTAGTTTAA+GGG + Chr5:99884514-99884533 MsG0580029629.01.T01:intron 30.0%
AACTTCTTACCTTTGCTTAA+AGG + Chr5:99885092-99885111 MsG0580029629.01.T01:intron 30.0%
AAGAAGAAGCAAATGCTAAT+GGG + Chr5:99882787-99882806 MsG0580029629.01.T01:CDS 30.0%
AAGAAGTGAAAGATGTTTGT+AGG + Chr5:99885120-99885139 MsG0580029629.01.T01:intron 30.0%
AAGCAAAGGTAAGAAGTTAA+AGG - Chr5:99885090-99885109 None:intergenic 30.0%
ACTTCTTACCTTTGCTTAAA+GGG + Chr5:99885093-99885112 MsG0580029629.01.T01:intron 30.0%
AGAGCTTTACTATATCTAGA+AGG - Chr5:99883095-99883114 None:intergenic 30.0%
AGAGTCTTCATACAAATCTA+AGG - Chr5:99885513-99885532 None:intergenic 30.0%
AGCATTAGAATATAGGTTCT+AGG + Chr5:99884268-99884287 MsG0580029629.01.T01:intron 30.0%
AGTAAGAAGATAAAACTGTG+AGG - Chr5:99886861-99886880 None:intergenic 30.0%
ATAACTAATAGAATGGGAAC+TGG - Chr5:99883357-99883376 None:intergenic 30.0%
ATATACAGTGAGAAAATGAG+AGG + Chr5:99884022-99884041 MsG0580029629.01.T01:intron 30.0%
ATGCTAATACCTTAAAAGCA+CGG - Chr5:99884253-99884272 None:intergenic 30.0%
ATGTTTATGTGCTATGGATT+GGG + Chr5:99883592-99883611 MsG0580029629.01.T01:intron 30.0%
ATTGAAATTAGCAATTGCTG+AGG + Chr5:99882692-99882711 MsG0580029629.01.T01:CDS 30.0%
CACATGCAATTTACTAGTTA+AGG + Chr5:99887056-99887075 MsG0580029629.01.T01:three_prime_UTR 30.0%
CATCACTAAGAATCATAAGA+AGG + Chr5:99885553-99885572 MsG0580029629.01.T01:CDS 30.0%
CATGGGAAAACTTAATTACT+AGG - Chr5:99884968-99884987 None:intergenic 30.0%
CTGAAAAGTTTGTCTATGTT+TGG - Chr5:99885456-99885475 None:intergenic 30.0%
GAATGCTTAAAGATAGATCT+GGG + Chr5:99883502-99883521 MsG0580029629.01.T01:intron 30.0%
GACTACAAGTGAATAAAAGT+AGG + Chr5:99886669-99886688 MsG0580029629.01.T01:intron 30.0%
TAGCATCCATAACAATACAA+AGG - Chr5:99884819-99884838 None:intergenic 30.0%
TCAACCATACAATATGAAAC+AGG + Chr5:99886204-99886223 MsG0580029629.01.T01:CDS 30.0%
TCCTCTTATCTTCATTAAAG+AGG - Chr5:99886474-99886493 None:intergenic 30.0%
TCCTCTTTAATGAAGATAAG+AGG + Chr5:99886470-99886489 MsG0580029629.01.T01:intron 30.0%
TCGATCCTAAATATGATACT+GGG - Chr5:99884342-99884361 None:intergenic 30.0%
TGAATGCTTAAAGATAGATC+TGG + Chr5:99883501-99883520 MsG0580029629.01.T01:intron 30.0%
TTCAACAAAAATCATCCCTT+TGG - Chr5:99882626-99882645 None:intergenic 30.0%
TTCATTAAAGAGGAAAAAGG+TGG - Chr5:99886464-99886483 None:intergenic 30.0%
! AAGTTAATTATCATTGGCCT+TGG - Chr5:99883673-99883692 None:intergenic 30.0%
! AATTAAGTTTTCCCATGGAA+TGG + Chr5:99884971-99884990 MsG0580029629.01.T01:intron 30.0%
! ATATTTTGTTGCATGTGTAC+AGG + Chr5:99885948-99885967 MsG0580029629.01.T01:intron 30.0%
! ATTAAGTTTTCCCATGGAAT+GGG + Chr5:99884972-99884991 MsG0580029629.01.T01:intron 30.0%
! CTAGTAATTAAGTTTTCCCA+TGG + Chr5:99884966-99884985 MsG0580029629.01.T01:intron 30.0%
! GAATAAGCTATCCGATTTTA+AGG - Chr5:99884218-99884237 None:intergenic 30.0%
! GTTTGAAACTTGGAACAATA+TGG + Chr5:99883399-99883418 MsG0580029629.01.T01:intron 30.0%
! TAATCACATTCTAGAGATAC+GGG - Chr5:99886081-99886100 None:intergenic 30.0%
! TCTTATTTCCCTTTAAGCAA+AGG - Chr5:99885104-99885123 None:intergenic 30.0%
! TGTTGTTTAGGTTTGAAACT+TGG + Chr5:99883389-99883408 MsG0580029629.01.T01:intron 30.0%
!! CATTTTTCTGAAAATGTCAG+TGG + Chr5:99882984-99883003 MsG0580029629.01.T01:CDS 30.0%
!! CGATTTTCTGAAAGCATAAT+AGG - Chr5:99886360-99886379 None:intergenic 30.0%
!! CTTACAAGACAGTTTTGTAA+GGG - Chr5:99884398-99884417 None:intergenic 30.0%
!! TACTTAGTTTTTACTGGATG+TGG + Chr5:99886877-99886896 MsG0580029629.01.T01:intron 30.0%
!!! TATTTTTGGGCATTTGATGT+AGG + Chr5:99887218-99887237 MsG0580029629.01.T01:three_prime_UTR 30.0%
AAAAAGCAATATCGTGATGC+AGG + Chr5:99886000-99886019 MsG0580029629.01.T01:CDS 35.0%
AAAAAGGTGGTTTCCAAGAA+TGG - Chr5:99886451-99886470 None:intergenic 35.0%
AAAATCAAAAGACCTAGTGG+GGG - Chr5:99887198-99887217 None:intergenic 35.0%
AACATGGGATATAAACCATC+GGG + Chr5:99883143-99883162 MsG0580029629.01.T01:CDS 35.0%
AATGGGAACTGGAAAGAAAA+AGG - Chr5:99883346-99883365 None:intergenic 35.0%
ACAAAACAATCAATCCAGTG+AGG - Chr5:99887000-99887019 None:intergenic 35.0%
ACCCAAAAAGGTAGTTTAAG+GGG + Chr5:99884515-99884534 MsG0580029629.01.T01:intron 35.0%
ACTATTAGTGTATCGAGGTA+TGG - Chr5:99884060-99884079 None:intergenic 35.0%
ACTGCTGTTAAGAAGCAATT+AGG + Chr5:99883206-99883225 MsG0580029629.01.T01:CDS 35.0%
AGAAGAAAATAAAGTCTCCG+CGG + Chr5:99882503-99882522 MsG0580029629.01.T01:CDS 35.0%
AGAAGATAAAACTGTGAGGT+TGG - Chr5:99886857-99886876 None:intergenic 35.0%
AGTGTCCCAGTATCATATTT+AGG + Chr5:99884334-99884353 MsG0580029629.01.T01:intron 35.0%
AGTTAAGGCAGTAGTAACAT+TGG + Chr5:99887071-99887090 MsG0580029629.01.T01:three_prime_UTR 35.0%
ATAGCACATAAACATGATGC+AGG - Chr5:99883587-99883606 None:intergenic 35.0%
ATCGGGATATTTGAAAGTGA+AGG + Chr5:99883160-99883179 MsG0580029629.01.T01:CDS 35.0%
ATGGGAACTGGAAAGAAAAA+GGG - Chr5:99883345-99883364 None:intergenic 35.0%
ATGTGGTGCTTATAAAGCTT+AGG - Chr5:99884431-99884450 None:intergenic 35.0%
ATTGCACCTTTCGGATTTAA+GGG - Chr5:99883122-99883141 None:intergenic 35.0%
CAAAACTGTCTTGTAAGGTA+AGG + Chr5:99884401-99884420 MsG0580029629.01.T01:intron 35.0%
CAACATGGGATATAAACCAT+CGG + Chr5:99883142-99883161 MsG0580029629.01.T01:CDS 35.0%
CAACCCAAAAAGGTAGTTTA+AGG + Chr5:99884513-99884532 MsG0580029629.01.T01:intron 35.0%
CAAGATAAGAAAGCTTTCCA+TGG + Chr5:99885428-99885447 MsG0580029629.01.T01:CDS 35.0%
CAGTTGCTACATTTATGAAC+AGG - Chr5:99885254-99885273 None:intergenic 35.0%
CATGTTTATGTGCTATGGAT+TGG + Chr5:99883591-99883610 MsG0580029629.01.T01:intron 35.0%
CCTTACAAAACTGTCTTGTA+AGG + Chr5:99884396-99884415 MsG0580029629.01.T01:intron 35.0%
CGTTTGCTCAAGTCTTTATA+AGG + Chr5:99884541-99884560 MsG0580029629.01.T01:intron 35.0%
CTGTTAAGAAGCAATTAGGA+AGG + Chr5:99883210-99883229 MsG0580029629.01.T01:CDS 35.0%
GAACTAAACTTCTTGCTTCT+CGG + Chr5:99882450-99882469 MsG0580029629.01.T01:CDS 35.0%
GATCCAATTTAGTCCATGTT+TGG + Chr5:99887305-99887324 MsG0580029629.01.T01:three_prime_UTR 35.0%
GATGCTTTCAAATGAGACTA+TGG + Chr5:99886032-99886051 MsG0580029629.01.T01:CDS 35.0%
GATTTGTATGAAGACTCTAC+TGG + Chr5:99885515-99885534 MsG0580029629.01.T01:CDS 35.0%
GCAATTAGGAAGGAATTATC+AGG + Chr5:99883220-99883239 MsG0580029629.01.T01:CDS 35.0%
GCACAATGTTGTTAGAAACA+GGG - Chr5:99886903-99886922 None:intergenic 35.0%
GCATGGTGATTATAAGTATC+TGG + Chr5:99882884-99882903 MsG0580029629.01.T01:CDS 35.0%
GCTAATTTCAATTCCTCTGT+CGG - Chr5:99882684-99882703 None:intergenic 35.0%
GGAACCTGTTTCATATTGTA+TGG - Chr5:99886211-99886230 None:intergenic 35.0%
GTACAGGATGAGTTGTTTAA+GGG + Chr5:99885964-99885983 MsG0580029629.01.T01:intron 35.0%
GTATCTAACTCTTCCAAACA+TGG - Chr5:99887321-99887340 None:intergenic 35.0%
GTCGATCCTAAATATGATAC+TGG - Chr5:99884343-99884362 None:intergenic 35.0%
TAAACATGATGCAGGTTAGA+TGG - Chr5:99883579-99883598 None:intergenic 35.0%
TAAGCTCCAAAACTTCTAAG+AGG - Chr5:99886304-99886323 None:intergenic 35.0%
TAAGTATCTGGATCCTAAAG+AGG + Chr5:99882896-99882915 MsG0580029629.01.T01:CDS 35.0%
TACAGGATGAGTTGTTTAAG+GGG + Chr5:99885965-99885984 MsG0580029629.01.T01:intron 35.0%
TCAAATTCTACACCAAGTAG+TGG - Chr5:99883254-99883273 None:intergenic 35.0%
TCCTTCCATATGAGTATCTT+GGG - Chr5:99885366-99885385 None:intergenic 35.0%
TCGGGATATTTGAAAGTGAA+GGG + Chr5:99883161-99883180 MsG0580029629.01.T01:CDS 35.0%
TCTTGACTATTAGTGTATCG+AGG - Chr5:99884065-99884084 None:intergenic 35.0%
TGACAGAAAAGCAAGTTTCT+GGG + Chr5:99882724-99882743 MsG0580029629.01.T01:CDS 35.0%
TGCACAATGTTGTTAGAAAC+AGG - Chr5:99886904-99886923 None:intergenic 35.0%
TGCATCATGTTTATGTGCTA+TGG + Chr5:99883586-99883605 MsG0580029629.01.T01:intron 35.0%
TGTACAGGATGAGTTGTTTA+AGG + Chr5:99885963-99885982 MsG0580029629.01.T01:intron 35.0%
TTCACTTTCAAATATCCCGA+TGG - Chr5:99883161-99883180 None:intergenic 35.0%
TTGACAGAAAAGCAAGTTTC+TGG + Chr5:99882723-99882742 MsG0580029629.01.T01:CDS 35.0%
TTTCTTCATAGCGATCACTA+TGG - Chr5:99885625-99885644 None:intergenic 35.0%
TTTGTCTATGTTTGGTACCA+TGG - Chr5:99885448-99885467 None:intergenic 35.0%
! AAAAGCACGGCATTATCTTT+AGG - Chr5:99884240-99884259 None:intergenic 35.0%
! AAGATAATGCCGTGCTTTTA+AGG + Chr5:99884241-99884260 MsG0580029629.01.T01:intron 35.0%
! AAGCTTTATAAGCACCACAT+AGG + Chr5:99884431-99884450 MsG0580029629.01.T01:intron 35.0%
! AATGTCTGGCTTACAAGTTA+TGG - Chr5:99883775-99883794 None:intergenic 35.0%
! CTTCCAAACATGGACTAAAT+TGG - Chr5:99887311-99887330 None:intergenic 35.0%
! GAATTGTGGATTGAGTTTGA+AGG - Chr5:99885803-99885822 None:intergenic 35.0%
! GGAGAAATTTTATACGGGTA+GGG + Chr5:99882575-99882594 MsG0580029629.01.T01:intron 35.0%
! GGCTTGGAGAAATTTTATAC+GGG + Chr5:99882570-99882589 MsG0580029629.01.T01:CDS 35.0%
! GGGCTTGGAGAAATTTTATA+CGG + Chr5:99882569-99882588 MsG0580029629.01.T01:CDS 35.0%
! TAGGGCATACCTTTTTACAA+AGG - Chr5:99886591-99886610 None:intergenic 35.0%
! TGGAGAAATTTTATACGGGT+AGG + Chr5:99882574-99882593 MsG0580029629.01.T01:intron 35.0%
! TGGCTGATCATTTAGGATAA+AGG + Chr5:99883419-99883438 MsG0580029629.01.T01:intron 35.0%
! TTCTGAAAATGTCAGTGGAA+TGG + Chr5:99882989-99883008 MsG0580029629.01.T01:CDS 35.0%
! TTTTATCCTTTAACCTTCGG+TGG - Chr5:99882758-99882777 None:intergenic 35.0%
! TTTTGCTTTGGTATGTGTCT+AGG + Chr5:99886153-99886172 MsG0580029629.01.T01:intron 35.0%
!! AGACAGTTTTGTAAGGGTTA+AGG - Chr5:99884392-99884411 None:intergenic 35.0%
!! CCTTACAAGACAGTTTTGTA+AGG - Chr5:99884399-99884418 None:intergenic 35.0%
!! CTAGAAGCACCTTTGTAAAA+AGG + Chr5:99886579-99886598 MsG0580029629.01.T01:intron 35.0%
!! GACAGTTTTGTAAGGGTTAA+GGG - Chr5:99884391-99884410 None:intergenic 35.0%
!! TTAGAATATAGGTTCTAGGC+TGG + Chr5:99884272-99884291 MsG0580029629.01.T01:intron 35.0%
!! TTTACAAAGGTGCTTCTAGT+GGG - Chr5:99886578-99886597 None:intergenic 35.0%
!!! AGGTGTTGTTTTGCTTGTTT+AGG + Chr5:99884648-99884667 MsG0580029629.01.T01:intron 35.0%
!!! GAGCTTTTAGTTTTAGTGTC+AGG + Chr5:99883827-99883846 MsG0580029629.01.T01:intron 35.0%
!!! TTTTACAAAGGTGCTTCTAG+TGG - Chr5:99886579-99886598 None:intergenic 35.0%
AAAATCACAAGGTGTGGGAT+GGG - Chr5:99886631-99886650 None:intergenic 40.0%
AAATCAAAAGACCTAGTGGG+GGG - Chr5:99887197-99887216 None:intergenic 40.0%
AACTCAATCCACAATTCTCG+AGG + Chr5:99885806-99885825 MsG0580029629.01.T01:CDS 40.0%
AACTTAAGGTTCATGGCACT+GGG + Chr5:99884601-99884620 MsG0580029629.01.T01:intron 40.0%
AAGAAAGAGGGCTATCTTCT+AGG + Chr5:99885843-99885862 MsG0580029629.01.T01:CDS 40.0%
AAGGCAAAATCACAAGGTGT+GGG - Chr5:99886636-99886655 None:intergenic 40.0%
AATTTGATCCACTTCCTCCA+GGG + Chr5:99883267-99883286 MsG0580029629.01.T01:CDS 40.0%
ACACTCCTTTGCACATTCTT+TGG - Chr5:99885701-99885720 None:intergenic 40.0%
ACAGGATGAGTTGTTTAAGG+GGG + Chr5:99885966-99885985 MsG0580029629.01.T01:intron 40.0%
ACGATATCAATCCCATTCCA+TGG - Chr5:99884986-99885005 None:intergenic 40.0%
AGCCACAAACCCTCAAAATA+TGG - Chr5:99884184-99884203 None:intergenic 40.0%
ATTCACTTGTAGTCAAACCG+AGG - Chr5:99886663-99886682 None:intergenic 40.0%
CAAGAACGTATGTATCCTCA+AGG + Chr5:99883047-99883066 MsG0580029629.01.T01:CDS 40.0%
CAGACAAATCACGATTGTAG+AGG - Chr5:99882935-99882954 None:intergenic 40.0%
CCAATCCAAAGAATGTGCAA+AGG + Chr5:99885693-99885712 MsG0580029629.01.T01:CDS 40.0%
CCTTTGCACATTCTTTGGAT+TGG - Chr5:99885696-99885715 None:intergenic 40.0%
CGATATCAATCCCATTCCAT+GGG - Chr5:99884985-99885004 None:intergenic 40.0%
CTCCTTCCATATGAGTATCT+TGG - Chr5:99885367-99885386 None:intergenic 40.0%
CTGTGGATACTGAAGAAAGA+GGG + Chr5:99885831-99885850 MsG0580029629.01.T01:CDS 40.0%
GACTAAACTAAACCCTGCTA+GGG - Chr5:99886609-99886628 None:intergenic 40.0%
GATTGCACCTTTCGGATTTA+AGG - Chr5:99883123-99883142 None:intergenic 40.0%
GGAAGGAATTATCAGGAAGA+TGG + Chr5:99883227-99883246 MsG0580029629.01.T01:CDS 40.0%
GGGTCTTAACTTAAGGTTCA+TGG + Chr5:99884594-99884613 MsG0580029629.01.T01:intron 40.0%
GGTTTGAAGGCAAAATCACA+AGG - Chr5:99886642-99886661 None:intergenic 40.0%
GTTGCATGATGTTCATGTTC+AGG + Chr5:99885400-99885419 MsG0580029629.01.T01:CDS 40.0%
TAAACTTCTTGCTTCTCGGT+TGG + Chr5:99882454-99882473 MsG0580029629.01.T01:CDS 40.0%
TAACTTAAGGTTCATGGCAC+TGG + Chr5:99884600-99884619 MsG0580029629.01.T01:intron 40.0%
TCAGCAATATGGTATGGTTC+TGG - Chr5:99884844-99884863 None:intergenic 40.0%
TCCCAAGATACTCATATGGA+AGG + Chr5:99885362-99885381 MsG0580029629.01.T01:CDS 40.0%
TCTGTGGATACTGAAGAAAG+AGG + Chr5:99885830-99885849 MsG0580029629.01.T01:CDS 40.0%
TGAAAGAGAGTGAGAAAGCA+GGG - Chr5:99885297-99885316 None:intergenic 40.0%
TGGGAACTGGAAAGAAAAAG+GGG - Chr5:99883344-99883363 None:intergenic 40.0%
TGGTTCCCAAGATACTCATA+TGG + Chr5:99885358-99885377 MsG0580029629.01.T01:CDS 40.0%
TTCATTGTAGCTAAGGTGCA+AGG + Chr5:99884716-99884735 MsG0580029629.01.T01:intron 40.0%
TTGGTAAATTGAGCTCAACG+TGG + Chr5:99886520-99886539 MsG0580029629.01.T01:intron 40.0%
! CAAAACTTCTAAGAGGACGT+GGG - Chr5:99886297-99886316 None:intergenic 40.0%
! CATATGGAAGGAGTTGACTT+TGG + Chr5:99885374-99885393 MsG0580029629.01.T01:CDS 40.0%
! CTTTTCACTGTGGAGATTTC+TGG - Chr5:99884886-99884905 None:intergenic 40.0%
! GCCCCTTAAACTACCTTTTT+GGG - Chr5:99884519-99884538 None:intergenic 40.0%
! GTGATTTTGCCTTCAAACCT+CGG + Chr5:99886643-99886662 MsG0580029629.01.T01:intron 40.0%
! TAAAAAGGTATGCCCTAGCA+GGG + Chr5:99886594-99886613 MsG0580029629.01.T01:intron 40.0%
! TCAATCCAAAGAAAGCGCAA+AGG + Chr5:99885756-99885775 MsG0580029629.01.T01:CDS 40.0%
! TTCTAGAAATAACCTACCCC+AGG - Chr5:99883539-99883558 None:intergenic 40.0%
!! AGATAGATCTGGGTTTGCTA+TGG + Chr5:99883512-99883531 MsG0580029629.01.T01:intron 40.0%
!! GATAGATCTGGGTTTGCTAT+GGG + Chr5:99883513-99883532 MsG0580029629.01.T01:intron 40.0%
!! GCTATCTTCTAGGATGACTA+AGG + Chr5:99885853-99885872 MsG0580029629.01.T01:CDS 40.0%
!! GGCGTTTTGAGCTTTCTTTT+CGG - Chr5:99882537-99882556 None:intergenic 40.0%
!! GGGGTAGGTTATTTCTAGAA+TGG + Chr5:99883539-99883558 MsG0580029629.01.T01:intron 40.0%
!! GTCCATATTTTGAGGGTTTG+TGG + Chr5:99884179-99884198 MsG0580029629.01.T01:intron 40.0%
!! TGTGAGGTTGGTGTGTATTT+GGG - Chr5:99886845-99886864 None:intergenic 40.0%
!!! CTGTTTTTTCCAGCTAACCA+AGG - Chr5:99886761-99886780 None:intergenic 40.0%
!!! GCGGAGACTTTATTTTCTTC+TGG - Chr5:99882504-99882523 None:intergenic 40.0%
AAAACGCCTGCACAGCTTAA+GGG + Chr5:99882549-99882568 MsG0580029629.01.T01:CDS 45.0%
AAAGAGAGTGAGAAAGCAGG+GGG - Chr5:99885295-99885314 None:intergenic 45.0%
AAGCAATATCGTGATGCAGG+TGG + Chr5:99886003-99886022 MsG0580029629.01.T01:CDS 45.0%
AGAGCACAAATATCCGACAG+AGG + Chr5:99882668-99882687 MsG0580029629.01.T01:intron 45.0%
AGGAAGTCTGCATGTTTGAC+TGG - Chr5:99885653-99885672 None:intergenic 45.0%
AGGCCAAGATCCATATGAGA+TGG + Chr5:99883067-99883086 MsG0580029629.01.T01:CDS 45.0%
AGGTCGTAACTCTAGTCGAT+GGG + Chr5:99884451-99884470 MsG0580029629.01.T01:intron 45.0%
ATGAGTTGTTTAAGGGGGAC+AGG + Chr5:99885971-99885990 MsG0580029629.01.T01:CDS 45.0%
ATTTGATCCACTTCCTCCAG+GGG + Chr5:99883268-99883287 MsG0580029629.01.T01:CDS 45.0%
CAAAATCACAAGGTGTGGGA+TGG - Chr5:99886632-99886651 None:intergenic 45.0%
CAAACTGAAGACGCAGTTCA+TGG + Chr5:99883302-99883321 MsG0580029629.01.T01:CDS 45.0%
CAATCAATCCAGTGAGGAAC+TGG - Chr5:99886994-99887013 None:intergenic 45.0%
CATGAACTGCGTCTTCAGTT+TGG - Chr5:99883304-99883323 None:intergenic 45.0%
CCTAAAGAGGTTGAGAGCAA+CGG + Chr5:99882909-99882928 MsG0580029629.01.T01:CDS 45.0%
CGATGCAGGGTCTTAACTTA+AGG + Chr5:99884587-99884606 MsG0580029629.01.T01:intron 45.0%
CTACTTACAGAGCTAAGACC+AGG - Chr5:99884913-99884932 None:intergenic 45.0%
CTAGAAGGCTCCATCTCATA+TGG - Chr5:99883080-99883099 None:intergenic 45.0%
CTGTTGCTGAGATAGAACCA+AGG + Chr5:99886230-99886249 MsG0580029629.01.T01:CDS 45.0%
CTTCCACCCTTAAATCCGAA+AGG + Chr5:99883113-99883132 MsG0580029629.01.T01:CDS 45.0%
GAAAGAGAGTGAGAAAGCAG+GGG - Chr5:99885296-99885315 None:intergenic 45.0%
GAAGAGCAGGATCAGCAATA+TGG - Chr5:99884855-99884874 None:intergenic 45.0%
GAAGGCAAAATCACAAGGTG+TGG - Chr5:99886637-99886656 None:intergenic 45.0%
GAATTTGATCCACTTCCTCC+AGG + Chr5:99883266-99883285 MsG0580029629.01.T01:CDS 45.0%
GACTAGAGTTACGACCTATG+TGG - Chr5:99884448-99884467 None:intergenic 45.0%
GAGCGTGAAGTTTGTAGTAG+TGG + Chr5:99884302-99884321 MsG0580029629.01.T01:intron 45.0%
GCAGGATCAGCAATATGGTA+TGG - Chr5:99884850-99884869 None:intergenic 45.0%
GCTCCATCTCATATGGATCT+TGG - Chr5:99883073-99883092 None:intergenic 45.0%
GGAACTGGAAAGAAAAAGGG+GGG - Chr5:99883342-99883361 None:intergenic 45.0%
GGAAGTCTGCATGTTTGACT+GGG - Chr5:99885652-99885671 None:intergenic 45.0%
GGACTAAACTAAACCCTGCT+AGG - Chr5:99886610-99886629 None:intergenic 45.0%
GGGAACTGGAAAGAAAAAGG+GGG - Chr5:99883343-99883362 None:intergenic 45.0%
GTAGTCAAACCGAGGTTTGA+AGG - Chr5:99886655-99886674 None:intergenic 45.0%
GTGAAAGAGAGTGAGAAAGC+AGG - Chr5:99885298-99885317 None:intergenic 45.0%
TAGAACCAAGGAAAGCTCAG+AGG + Chr5:99886242-99886261 MsG0580029629.01.T01:CDS 45.0%
TAGGTCGTAACTCTAGTCGA+TGG + Chr5:99884450-99884469 MsG0580029629.01.T01:intron 45.0%
TCACTCCTTTGCGCTTTCTT+TGG - Chr5:99885764-99885783 None:intergenic 45.0%
TCATCCTCGCTAAAGCTAGA+CGG - Chr5:99886960-99886979 None:intergenic 45.0%
TCTGGAGAATTCAGAAGAGC+AGG - Chr5:99884868-99884887 None:intergenic 45.0%
TCTGTCGGATATTTGTGCTC+TGG - Chr5:99882669-99882688 None:intergenic 45.0%
TCTGTTGCAGATGTGACGTA+TGG + Chr5:99882951-99882970 MsG0580029629.01.T01:CDS 45.0%
! AAGGTGCTTCTAGTGGGATT+CGG - Chr5:99886572-99886591 None:intergenic 45.0%
! CAGAAAAGCAAGTTTCTGGG+TGG + Chr5:99882727-99882746 MsG0580029629.01.T01:CDS 45.0%
! CCAAAACTTCTAAGAGGACG+TGG - Chr5:99886298-99886317 None:intergenic 45.0%
! CCACGTCCTCTTAGAAGTTT+TGG + Chr5:99886295-99886314 MsG0580029629.01.T01:intron 45.0%
! CCCATGTTGATTGCACCTTT+CGG - Chr5:99883131-99883150 None:intergenic 45.0%
! CCGAAAGGTGCAATCAACAT+GGG + Chr5:99883128-99883147 MsG0580029629.01.T01:CDS 45.0%
! CGCCCCTTAAACTACCTTTT+TGG - Chr5:99884520-99884539 None:intergenic 45.0%
! GTAAAAAGGTATGCCCTAGC+AGG + Chr5:99886593-99886612 MsG0580029629.01.T01:intron 45.0%
! GTTTTGCCACCGAAGGTTAA+AGG + Chr5:99882749-99882768 MsG0580029629.01.T01:CDS 45.0%
! TCCGAAAGGTGCAATCAACA+TGG + Chr5:99883127-99883146 MsG0580029629.01.T01:CDS 45.0%
! TCTTTTCGGAAACTTCTCCG+CGG - Chr5:99882523-99882542 None:intergenic 45.0%
!! AGCGTAAAGTGCTGCTTAGT+TGG + Chr5:99886501-99886520 MsG0580029629.01.T01:intron 45.0%
!! AGTAATGCCAGTCGTTTTCC+TGG + Chr5:99885476-99885495 MsG0580029629.01.T01:CDS 45.0%
!! CTGTGAGGTTGGTGTGTATT+TGG - Chr5:99886846-99886865 None:intergenic 45.0%
!! CTTGGTTCTATCTCAGCAAC+AGG - Chr5:99886232-99886251 None:intergenic 45.0%
!! TCATATGGATCTTGGCCTTG+AGG - Chr5:99883065-99883084 None:intergenic 45.0%
!!! GCACACATGCTGTTTTGCTT+TGG + Chr5:99886141-99886160 MsG0580029629.01.T01:intron 45.0%
!! AATTTATTAATATTTGTATT+TGG + Chr5:99883916-99883935 MsG0580029629.01.T01:intron 5.0%
AAACAGCATGTGTGCGTGCA+TGG - Chr5:99886136-99886155 None:intergenic 50.0%
AGTCTGCATGTTTGACTGGG+AGG - Chr5:99885649-99885668 None:intergenic 50.0%
AGTTAAGACCCTGCATCGAG+TGG - Chr5:99884585-99884604 None:intergenic 50.0%
ATGTCTGCAGTCGTACGCAA+GGG + Chr5:99886732-99886751 MsG0580029629.01.T01:intron 50.0%
CAAAACGCCTGCACAGCTTA+AGG + Chr5:99882548-99882567 MsG0580029629.01.T01:CDS 50.0%
CAGGAAGATGGTCCACTACT+TGG + Chr5:99883239-99883258 MsG0580029629.01.T01:CDS 50.0%
CATAAGAAGGATGCCAAGCG+CGG + Chr5:99885566-99885585 MsG0580029629.01.T01:CDS 50.0%
CCACAATTCTCGAGGTTCTG+TGG + Chr5:99885814-99885833 MsG0580029629.01.T01:CDS 50.0%
CCACAGAACCTCGAGAATTG+TGG - Chr5:99885817-99885836 None:intergenic 50.0%
CCGTTGCTCTCAACCTCTTT+AGG - Chr5:99882912-99882931 None:intergenic 50.0%
CTACAAACTTCACGCTCCAG+AGG - Chr5:99884299-99884318 None:intergenic 50.0%
CTGAAGACGCAGTTCATGGT+AGG + Chr5:99883306-99883325 MsG0580029629.01.T01:intron 50.0%
GCACCTTTCGGATTTAAGGG+TGG - Chr5:99883119-99883138 None:intergenic 50.0%
GGGCTCAACTCAACCCAAAA+AGG + Chr5:99884503-99884522 MsG0580029629.01.T01:intron 50.0%
GTTAAGACCCTGCATCGAGT+GGG - Chr5:99884584-99884603 None:intergenic 50.0%
GTTTGGCATTCAAATGCCCC+TGG - Chr5:99883287-99883306 None:intergenic 50.0%
TATGTCTGCAGTCGTACGCA+AGG + Chr5:99886731-99886750 MsG0580029629.01.T01:intron 50.0%
TCCACAGTGAAAAGTCGACC+TGG + Chr5:99884892-99884911 MsG0580029629.01.T01:CDS 50.0%
TCTAAGGAAGAGTTCCTGCC+AGG - Chr5:99885497-99885516 None:intergenic 50.0%
TGCTGATACCAGTTCCTCAC+TGG + Chr5:99886983-99887002 MsG0580029629.01.T01:CDS 50.0%
! TTCTAAGAGGACGTGGGTGT+CGG - Chr5:99886291-99886310 None:intergenic 50.0%
!! ACCAGGTCGACTTTTCACTG+TGG - Chr5:99884896-99884915 None:intergenic 50.0%
!! TCGTTCAAGTGGTGTCATCC+AGG + Chr5:99882818-99882837 MsG0580029629.01.T01:CDS 50.0%
AGCATGTGTGCGTGCATGGA+AGG - Chr5:99886132-99886151 None:intergenic 55.0%
ATCGTGATGCAGGTGGAGCA+GGG + Chr5:99886010-99886029 MsG0580029629.01.T01:CDS 55.0%
ATGTGTGCGTGCATGGAAGG+AGG - Chr5:99886129-99886148 None:intergenic 55.0%
CAAAAGACCTAGTGGGGGGT+AGG - Chr5:99887193-99887212 None:intergenic 55.0%
CAAGGGACACCTTGGTTAGC+TGG + Chr5:99886749-99886768 MsG0580029629.01.T01:intron 55.0%
CAGATGTGACGTATGGACGC+AGG + Chr5:99882958-99882977 MsG0580029629.01.T01:CDS 55.0%
CCATATGCCCACTCGATGCA+GGG + Chr5:99884574-99884593 MsG0580029629.01.T01:intron 55.0%
GCTCACCTCTGAGCTTTCCT+TGG - Chr5:99886250-99886269 None:intergenic 55.0%
GGACTTGGGCAAGATTCGTG+CGG + Chr5:99882852-99882871 MsG0580029629.01.T01:CDS 55.0%
GGGCGACAAGATCGTTCAAG+TGG + Chr5:99882807-99882826 MsG0580029629.01.T01:CDS 55.0%
GTTCCTGCCAGGAAAACGAC+TGG - Chr5:99885486-99885505 None:intergenic 55.0%
TAGAACTCCTACCCCCCACT+AGG + Chr5:99887183-99887202 MsG0580029629.01.T01:three_prime_UTR 55.0%
TATCGTGATGCAGGTGGAGC+AGG + Chr5:99886009-99886028 MsG0580029629.01.T01:CDS 55.0%
TCAAATGCCCCTGGAGGAAG+TGG - Chr5:99883278-99883297 None:intergenic 55.0%
TCCAAGCCCTTAAGCTGTGC+AGG - Chr5:99882558-99882577 None:intergenic 55.0%
TCCATATGCCCACTCGATGC+AGG + Chr5:99884573-99884592 MsG0580029629.01.T01:intron 55.0%
TCGTGCGGAAGCAGTAAGCA+TGG + Chr5:99882867-99882886 MsG0580029629.01.T01:CDS 55.0%
TCTAAGAGGACGTGGGTGTC+GGG - Chr5:99886290-99886309 None:intergenic 55.0%
TGGCATTCAAATGCCCCTGG+AGG - Chr5:99883284-99883303 None:intergenic 55.0%
! AGGATCGTGGCAGTGGACTT+GGG + Chr5:99882838-99882857 MsG0580029629.01.T01:CDS 55.0%
!! AGTGGTGTCATCCAGGATCG+TGG + Chr5:99882825-99882844 MsG0580029629.01.T01:CDS 55.0%
!! ATCTGGGTTTGCTATGGGCC+TGG + Chr5:99883518-99883537 MsG0580029629.01.T01:intron 55.0%
!! ATGCCAGTCGTTTTCCTGGC+AGG + Chr5:99885480-99885499 MsG0580029629.01.T01:CDS 55.0%
!! GATGCCGTCTAGCTTTAGCG+AGG + Chr5:99886953-99886972 MsG0580029629.01.T01:CDS 55.0%
!! TAGGTTCTAGGCTGGACCTC+TGG + Chr5:99884280-99884299 MsG0580029629.01.T01:intron 55.0%
!! TCTGGGTTTGCTATGGGCCT+GGG + Chr5:99883519-99883538 MsG0580029629.01.T01:intron 55.0%
CAAGTCCACTGCCACGATCC+TGG - Chr5:99882839-99882858 None:intergenic 60.0%
CATACCCTCAACACCGCGCT+TGG - Chr5:99885582-99885601 None:intergenic 60.0%
CCCTGCATCGAGTGGGCATA+TGG - Chr5:99884577-99884596 None:intergenic 60.0%
GCCTGCACAGCTTAAGGGCT+TGG + Chr5:99882554-99882573 MsG0580029629.01.T01:CDS 60.0%
GTCATCCAGGATCGTGGCAG+TGG + Chr5:99882831-99882850 MsG0580029629.01.T01:CDS 60.0%
GTCGTACGCAAGGGACACCT+TGG + Chr5:99886741-99886760 MsG0580029629.01.T01:intron 60.0%
! CAGGATCGTGGCAGTGGACT+TGG + Chr5:99882837-99882856 MsG0580029629.01.T01:CDS 60.0%
! GATGCCAAGCGCGGTGTTGA+GGG + Chr5:99885575-99885594 MsG0580029629.01.T01:CDS 60.0%
!! CTGGGTGGTTTTGCCACCGA+AGG + Chr5:99882742-99882761 MsG0580029629.01.T01:CDS 60.0%
!! CTGGGTTTGCTATGGGCCTG+GGG + Chr5:99883520-99883539 MsG0580029629.01.T01:intron 60.0%
!! GTTTGCTATGGGCCTGGGGT+AGG + Chr5:99883524-99883543 MsG0580029629.01.T01:intron 60.0%
! GGATGCCAAGCGCGGTGTTG+AGG + Chr5:99885574-99885593 MsG0580029629.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 99882444 99887399 99882444 ID=MsG0580029629.01;Name=MsG0580029629.01
Chr5 mRNA 99882444 99887399 99882444 ID=MsG0580029629.01.T01;Parent=MsG0580029629.01;Name=MsG0580029629.01.T01;_AED=0.39;_eAED=0.40;_QI=0|1|0.85|1|1|1|7|389|555
Chr5 exon 99882444 99882591 99882444 ID=MsG0580029629.01.T01:exon:36352;Parent=MsG0580029629.01.T01
Chr5 exon 99882670 99883323 99882670 ID=MsG0580029629.01.T01:exon:36353;Parent=MsG0580029629.01.T01
Chr5 exon 99884845 99884924 99884845 ID=MsG0580029629.01.T01:exon:36354;Parent=MsG0580029629.01.T01
Chr5 exon 99885332 99885874 99885332 ID=MsG0580029629.01.T01:exon:36355;Parent=MsG0580029629.01.T01
Chr5 exon 99885970 99886053 99885970 ID=MsG0580029629.01.T01:exon:36356;Parent=MsG0580029629.01.T01
Chr5 exon 99886175 99886263 99886175 ID=MsG0580029629.01.T01:exon:36357;Parent=MsG0580029629.01.T01
Chr5 exon 99886941 99887399 99886941 ID=MsG0580029629.01.T01:exon:36358;Parent=MsG0580029629.01.T01
Chr5 CDS 99882444 99882591 99882444 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99882670 99883323 99882670 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99884845 99884924 99884845 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99885332 99885874 99885332 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99885970 99886053 99885970 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99886175 99886263 99886175 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 CDS 99886941 99887010 99886941 ID=MsG0580029629.01.T01:cds;Parent=MsG0580029629.01.T01
Chr5 three_prime_UTR 99887011 99887399 99887011 ID=MsG0580029629.01.T01:three_prime_utr;Parent=MsG0580029629.01.T01
Gene Sequence

>MsG0580029629.01.T01

ATGCACGAACTAAACTTCTTGCTTCTCGGTTGGTGTTTAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCCGCGGAGAAGTTTCCGAAAAGAAAGCTCAAAACGCCTGCACAGCTTAAGGGCTTGGAGAAATTTTATACGGAGCACAAATATCCGACAGAGGAATTGAAATTAGCAATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTTTCTGGGTGGTTTTGCCACCGAAGGTTAAAGGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTAATGGGCGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCGTGCGGAAGCAGTAAGCATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCAACGGCCTCTACAATCGTGATTTGTCTGTTGCAGATGTGACGTATGGACGCAGGAATCATTTTTCTGAAAATGTCAGTGGAATGGATGATGACACGTCATCTGAGAGTAGTTCTTATTTGCAAGAACGTATGTATCCTCAAGGCCAAGATCCATATGAGATGGAGCCTTCTAGATATAGTAAAGCTCTTCCACCCTTAAATCCGAAAGGTGCAATCAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGACGCAGTTCATGAACCATACCATATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTGAAAAGTCGACCTGGTCTTAGCTCTAGATATGATTCATATTATACTAAACATGGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCGTTGCATGATGTTCATGTTCAGGATAAACAAGATAAGAAAGCTTTCCATGGTACCAAACATAGACAAACTTTTCAGAGTAATGCCAGTCGTTTTCCTGGCAGGAACTCTTCCTTAGATTTGTATGAAGACTCTACTGGAGAAGCTGCTTATAACATCACTAAGAATCATAAGAAGGATGCCAAGCGCGGTGTTGAGGGTATGAGATCTGATTCTACTTCTAACCATAGTGATCGCTATGAAGAAAACCTCCCAGTCAAACATGCAGACTTCCTACAATATAACTATGAAAACACCAATCCAAAGAATGTGCAAAGGAGTGTTCATGCAGACATTCTTCAATATGACTATGATAATGTCAATCCAAAGAAAGCGCAAAGGAGTGAACACATAAAATCTAAACCTTCAAACTCAATCCACAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGACTAAGGATGAGTTGTTTAAGGGGGACAGGAAGTCAAAAAAGCAATATCGTGATGCAGGTGGAGCAGGGATGCTTTCAAATGAGACTATGGTTGCAAAACGACTTAAAGCAAATACGTTTCAACCATACAATATGAAACAGGTTCCTGTTGCTGAGATAGAACCAAGGAAAGCTCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCTGATACCAGTTCCTCACTGGATTGA

Protein sequence

>MsG0580029629.01.T01

MHELNFLLLGWCLESSELQPEENKVSAEKFPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADVTYGRRNHFSENVSGMDDDTSSESSSYLQERMYPQGQDPYEMEPSRYSKALPPLNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEDAVHEPYHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDKKAFHGTKHRQTFQSNASRFPGRNSSLDLYEDSTGEAAYNITKNHKKDAKRGVEGMRSDSTSNHSDRYEENLPVKHADFLQYNYENTNPKNVQRSVHADILQYDYDNVNPKKAQRSEHIKSKPSNSIHNSRGSVDTEERGLSSRMTKDELFKGDRKSKKQYRDAGGAGMLSNETMVAKRLKANTFQPYNMKQVPVAEIEPRKAQRSAAEMPSSFSEDETADTSSSLD*