AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016971.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016971.01.T01 MTR_3g098990 96.780 528 12 4 1 526 1 525 0.0 986
MsG0380016971.01.T01 MTR_5g095720 41.135 423 206 12 93 489 444 849 2.40e-69 239
MsG0380016971.01.T01 MTR_3g058970 40.334 419 215 9 93 489 371 776 3.27e-67 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016971.01.T01 AT3G48710 48.970 437 191 12 69 497 30 442 7.08e-112 340
MsG0380016971.01.T01 AT5G63550 49.043 418 173 10 94 497 94 485 7.31e-99 309
MsG0380016971.01.T01 AT5G63550 48.558 416 177 9 94 497 94 484 1.42e-97 306
MsG0380016971.01.T01 AT5G55660 52.632 171 73 4 93 261 323 487 5.93e-46 172
MsG0380016971.01.T01 AT4G26630 43.509 285 128 5 12 268 207 486 2.56e-42 162
MsG0380016971.01.T01 AT4G26630 43.509 285 128 5 12 268 207 486 2.56e-42 162

Find 140 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGCTGTTGGAATTTC+TGG 0.096765 3:+90142063 MsG0380016971.01.T01:CDS
TTCACACTACTCTTGTTTAT+TGG 0.122133 3:-90141934 None:intergenic
CCTATTCTACTTCTAATTCT+AGG 0.171908 3:+90139753 MsG0380016971.01.T01:five_prime_UTR
GCAATGTTAAATTTATTTAT+TGG 0.173383 3:+90144903 MsG0380016971.01.T01:three_prime_UTR
TTCTGGTTTGGGTTCATCTT+TGG 0.192982 3:-90139885 None:intergenic
AAAGCTTTGGTAGGTATATT+TGG 0.219175 3:+90144711 MsG0380016971.01.T01:three_prime_UTR
TTCAACTTCTTCTTCTGGTT+TGG 0.223760 3:-90139897 None:intergenic
TATGATAGATGCTCTAAATT+AGG 0.236927 3:+90144753 MsG0380016971.01.T01:three_prime_UTR
TTCAATTATCAGTCCTTTAC+TGG 0.245498 3:-90140203 None:intergenic
ATGTTGACAGGTAAACATTT+TGG 0.262420 3:+90144423 MsG0380016971.01.T01:intron
AAATGACAAATCTGTAATAA+AGG 0.263279 3:-90144813 None:intergenic
TCAACTTCTTCTTCTGGTTT+GGG 0.267047 3:-90139896 None:intergenic
CAATGTTAAATTTATTTATT+GGG 0.289715 3:+90144904 MsG0380016971.01.T01:three_prime_UTR
GTTACTTCAACTTCTTCTTC+TGG 0.304574 3:-90139902 None:intergenic
GAACCTTCACCTTCGAAGTT+TGG 0.308498 3:+90140169 MsG0380016971.01.T01:CDS
TAACATTGCTCTAAATTAGA+AGG 0.312028 3:-90144889 None:intergenic
AGAATAGGAAAGATGAGATT+TGG 0.329354 3:-90139738 None:intergenic
GGAAAGATGAGATTTGGAAT+TGG 0.340647 3:-90139732 None:intergenic
ACCGTCTTCCTTTCCCTAGT+TGG 0.341819 3:-90140133 None:intergenic
AACTGCAAAGGCTGCGGTTA+AGG 0.346132 3:+90143820 MsG0380016971.01.T01:CDS
GAAAGATGAGATTTGGAATT+GGG 0.348178 3:-90139731 None:intergenic
AATGACAAATCTGTAATAAA+GGG 0.349283 3:-90144812 None:intergenic
GAAGTACTCTTGTGAGCTTT+TGG 0.351465 3:-90143563 None:intergenic
CACTGCAACATCTTCATCTT+GGG 0.358494 3:-90143486 None:intergenic
GGAAGATGCTGGTGAGAAGA+AGG 0.360035 3:+90140051 MsG0380016971.01.T01:CDS
TAAGGAAGTAGATTTCAATA+AGG 0.361423 3:+90144205 MsG0380016971.01.T01:CDS
TCTTCCCAAACAGTATACTA+TGG 0.363218 3:-90141505 None:intergenic
TTCATCATCATCATCTTTCT+CGG 0.365632 3:-90139987 None:intergenic
CCACTGCAACATCTTCATCT+TGG 0.375147 3:-90143487 None:intergenic
AATACAGACAATACCTTTGC+AGG 0.376354 3:-90142519 None:intergenic
CTATCACTCGTCGGAGTAAC+CGG 0.377163 3:-90140109 None:intergenic
ATGCTCCATAGTATACTGTT+TGG 0.382079 3:+90141500 MsG0380016971.01.T01:CDS
CTATTCTACTTCTAATTCTA+GGG 0.384269 3:+90139754 MsG0380016971.01.T01:five_prime_UTR
GTCTATACAGGTTAAAGCTT+TGG 0.386031 3:+90144698 MsG0380016971.01.T01:three_prime_UTR
TTTGGTATCGTCTAGGGTTT+CGG 0.386462 3:-90139840 None:intergenic
CTCCTGTTAGCTGTCTATAC+AGG 0.397071 3:+90144686 MsG0380016971.01.T01:three_prime_UTR
GTGCGGGTTACATCTAAATA+TGG 0.398787 3:-90144789 None:intergenic
CCTAGAATTAGAAGTAGAAT+AGG 0.410516 3:-90139753 None:intergenic
AACAATCTAAAGAGGAATAT+AGG 0.417865 3:+90141630 MsG0380016971.01.T01:CDS
TGCTCCATAGTATACTGTTT+GGG 0.420968 3:+90141501 MsG0380016971.01.T01:CDS
CCCACACATAACCAGAAAAC+TGG 0.422298 3:-90141653 None:intergenic
ACCTTTGCAGGTGTTTCTCC+AGG 0.429504 3:-90142507 None:intergenic
CGGTTACTCCGACGAGTGAT+AGG 0.432059 3:+90140110 MsG0380016971.01.T01:CDS
GGTAGCCATGGATGAAGAAA+AGG 0.436423 3:-90139819 None:intergenic
AAAGGAAAAGCAAGATACTA+AGG 0.439714 3:+90143781 MsG0380016971.01.T01:CDS
TGTGGATTTAGCTTCAGCTT+TGG 0.444959 3:-90143615 None:intergenic
AGCATATGCAGGTTGTCATC+AGG 0.452386 3:-90141482 None:intergenic
AGTTGTAGTTGAGATTCTTA+AGG 0.454398 3:+90144187 MsG0380016971.01.T01:CDS
CAGCTCAAGGATATTCCTAA+TGG 0.456524 3:+90140328 MsG0380016971.01.T01:CDS
CGACGAGTGATAGGCCAACT+AGG 0.464921 3:+90140119 MsG0380016971.01.T01:CDS
TCTAGGGTTTCTCTTCCGCT+AGG 0.467674 3:+90139770 MsG0380016971.01.T01:five_prime_UTR
CTGCCTACTCGGCTCTACCT+TGG 0.468843 3:-90144153 None:intergenic
AACCTGTATAGACAGCTAAC+AGG 0.473251 3:-90144688 None:intergenic
TAAAGGACTGATAATTGAAA+AGG 0.476582 3:+90140207 MsG0380016971.01.T01:CDS
GGAAGGTCTTCTTCCAGTAA+AGG 0.477738 3:+90140190 MsG0380016971.01.T01:CDS
AAACTTCGAAGGTGAAGGTT+CGG 0.483514 3:-90140167 None:intergenic
TGCAGAAAATAGAATCTTGT+GGG 0.483707 3:+90144634 MsG0380016971.01.T01:three_prime_UTR
TAGAGCATCTATCATAGAAA+AGG 0.483847 3:-90144746 None:intergenic
GATGTTGCAGTGGCAAATAA+TGG 0.486223 3:+90143497 MsG0380016971.01.T01:CDS
AAAACAGAGAACAAGGGTAA+AGG 0.493647 3:+90141852 MsG0380016971.01.T01:CDS
GGTTGCAGGTTGATCTGACT+TGG 0.495113 3:-90143741 None:intergenic
GATGTCGATGCGGGTAAAGA+TGG 0.495668 3:+90144561 MsG0380016971.01.T01:CDS
TTACTCTTCATCTTCATCAC+TGG 0.499151 3:-90144589 None:intergenic
CTTCACCTTCGAAGTTTGGA+AGG 0.500580 3:+90140173 MsG0380016971.01.T01:CDS
GCAACCTCTAGCAAATCTCC+TGG 0.500613 3:+90142489 MsG0380016971.01.T01:CDS
GAAGATGCTGGTGAGAAGAA+GGG 0.505112 3:+90140052 MsG0380016971.01.T01:CDS
CAAGGTAGAGCCGAGTAGGC+AGG 0.505315 3:+90144154 MsG0380016971.01.T01:CDS
GGAACTGTCTGCAAAGCTGT+TGG 0.508885 3:+90142054 MsG0380016971.01.T01:CDS
CTAGGGTTTCTCTTCCGCTA+GGG 0.510869 3:+90139771 MsG0380016971.01.T01:five_prime_UTR
GCGTGCATGTCCTGCCTACT+CGG 0.511396 3:-90144164 None:intergenic
GGCGATGGGGATGTCGATGC+GGG 0.518653 3:+90144552 MsG0380016971.01.T01:CDS
TGTGATATCCTCCGCCAACT+TGG 0.519770 3:+90144327 MsG0380016971.01.T01:CDS
GATGAGGAGGAGGAAGATGC+TGG 0.524251 3:+90140040 MsG0380016971.01.T01:CDS
TGAAAATAAAATTTAGCTGT+GGG 0.524487 3:-90144661 None:intergenic
GTCTAGGGTTTCGGTAGCCA+TGG 0.528885 3:-90139831 None:intergenic
AAGCTGATAGTGATGGCGAT+GGG 0.530338 3:+90144538 MsG0380016971.01.T01:CDS
AAAGATGATGATGATGAAGA+TGG 0.532403 3:+90139992 MsG0380016971.01.T01:CDS
CAATAATAATGTTTACATGC+AGG 0.532869 3:-90144866 None:intergenic
CTTCCAAACTTCGAAGGTGA+AGG 0.533904 3:-90140172 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 3:+90141939 MsG0380016971.01.T01:CDS
AAGGCTGCGGTTAAGGATCA+AGG 0.539742 3:+90143827 MsG0380016971.01.T01:CDS
GTATACTATGGAGCATATGC+AGG 0.541768 3:-90141493 None:intergenic
GGTGGGTAAATCAGAGGGAG+AGG 0.543397 3:+90143532 MsG0380016971.01.T01:CDS
TCATCCTCTTCAACATCAGA+AGG 0.546993 3:-90143431 None:intergenic
GCATAGAAAAGCAGAGGTGA+AGG 0.548691 3:+90144458 MsG0380016971.01.T01:CDS
AAGCAAAACTGCAAAGGCTG+CGG 0.555092 3:+90143814 MsG0380016971.01.T01:CDS
GGCTGCAAGCAAAACTGCAA+AGG 0.556180 3:+90143808 MsG0380016971.01.T01:CDS
AAATCTGTAATAAAGGGGTG+CGG 0.557661 3:-90144806 None:intergenic
ATGAAAATAAAATTTAGCTG+TGG 0.560967 3:-90144662 None:intergenic
AGACCAAGGTAGAGCCGAGT+AGG 0.561195 3:+90144150 MsG0380016971.01.T01:CDS
GTCAGGTTAACAATCTAAAG+AGG 0.562124 3:+90141622 MsG0380016971.01.T01:intron
CTGCAGAAAATAGAATCTTG+TGG 0.567663 3:+90144633 MsG0380016971.01.T01:three_prime_UTR
TCCTGGAGAAACACCTGCAA+AGG 0.568341 3:+90142506 MsG0380016971.01.T01:CDS
ATACAGGTTAAAGCTTTGGT+AGG 0.571121 3:+90144702 MsG0380016971.01.T01:three_prime_UTR
AGAGGTCTTCTTAACAGATG+TGG 0.571409 3:-90143633 None:intergenic
AGATCGTACCAAGTTGGCGG+AGG 0.575455 3:-90144335 None:intergenic
GAAGCTGATAGTGATGGCGA+TGG 0.577833 3:+90144537 MsG0380016971.01.T01:CDS
AATGGAAGTGATAACGAGGT+GGG 0.578180 3:+90143515 MsG0380016971.01.T01:CDS
GTAGCCATGGATGAAGAAAA+GGG 0.579235 3:-90139818 None:intergenic
GTCGTCAGAGAAGAAGAGTC+CGG 0.583062 3:+90140090 MsG0380016971.01.T01:CDS
AAAGCCTTCTGATGTTGAAG+AGG 0.584119 3:+90143427 MsG0380016971.01.T01:CDS
TTGCATCAGAAAGTTCAGCT+TGG 0.584847 3:-90143454 None:intergenic
AATCTGTAATAAAGGGGTGC+GGG 0.591429 3:-90144805 None:intergenic
GACGAGTGATAGGCCAACTA+GGG 0.592833 3:+90140120 MsG0380016971.01.T01:CDS
AAAGCAAGATACTAAGGGAA+AGG 0.596671 3:+90143787 MsG0380016971.01.T01:CDS
TGGCGATGGGGATGTCGATG+CGG 0.597275 3:+90144551 MsG0380016971.01.T01:CDS
CTAGTTGGCCTATCACTCGT+CGG 0.600264 3:-90140118 None:intergenic
AACGAGGTGGGTAAATCAGA+GGG 0.602782 3:+90143527 MsG0380016971.01.T01:CDS
AAAAGATCGTACCAAGTTGG+CGG 0.607538 3:-90144338 None:intergenic
GCCAACTAGGGAAAGGAAGA+CGG 0.609544 3:+90140132 MsG0380016971.01.T01:CDS
GGGACGTGGTACTCAGCTCA+AGG 0.613257 3:+90140315 MsG0380016971.01.T01:intron
GAGGAAGAAGCTGATAGTGA+TGG 0.613294 3:+90144531 MsG0380016971.01.T01:CDS
TGATGAGGAAGATGAAGGTG+AGG 0.613693 3:+90144512 MsG0380016971.01.T01:CDS
GTGATAGGCCAACTAGGGAA+AGG 0.614124 3:+90140125 MsG0380016971.01.T01:CDS
AAGGAAAAGCAAGATACTAA+GGG 0.616103 3:+90143782 MsG0380016971.01.T01:CDS
AATTAATAATATGTCTGATG+AGG 0.618113 3:+90144497 MsG0380016971.01.T01:CDS
ATGACAAATCTGTAATAAAG+GGG 0.618647 3:-90144811 None:intergenic
TGATGCTGATGATGAGGAGG+AGG 0.619807 3:+90140030 MsG0380016971.01.T01:CDS
GAACATCAGTAGTAGCATGT+GGG 0.620057 3:-90142090 None:intergenic
TTATGTGTGGGCTGAAAATG+AGG 0.621414 3:+90141665 MsG0380016971.01.T01:CDS
TTTAATGCATAGAAAAGCAG+AGG 0.621749 3:+90144452 MsG0380016971.01.T01:CDS
GAAGACCTTCCAAACTTCGA+AGG 0.621788 3:-90140178 None:intergenic
AGAACATCAGTAGTAGCATG+TGG 0.622938 3:-90142091 None:intergenic
TTCTCCAGGAGATTTGCTAG+AGG 0.624862 3:-90142493 None:intergenic
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 3:+90141857 MsG0380016971.01.T01:CDS
TAATGGAAGTGATAACGAGG+TGG 0.625907 3:+90143514 MsG0380016971.01.T01:CDS
TAACGAGGTGGGTAAATCAG+AGG 0.626281 3:+90143526 MsG0380016971.01.T01:CDS
AACATCAGTAGTAGCATGTG+GGG 0.636718 3:-90142089 None:intergenic
TAAAAGTAGTAAGAAGACCA+AGG 0.637365 3:+90144136 MsG0380016971.01.T01:CDS
CCAAGATGAAGATGTTGCAG+TGG 0.642055 3:+90143487 MsG0380016971.01.T01:CDS
TGCTGATGCTGATGATGAGG+AGG 0.650159 3:+90140027 MsG0380016971.01.T01:CDS
CGATGCTGATGCTGATGATG+AGG 0.652325 3:+90140024 MsG0380016971.01.T01:CDS
AAGAGAAGCAGAATCCTGCT+CGG 0.653130 3:-90143717 None:intergenic
ATGTCTGATGAGGAAGATGA+AGG 0.653342 3:+90144507 MsG0380016971.01.T01:CDS
AACTAGGGAAAGGAAGACGG+TGG 0.691004 3:+90140135 MsG0380016971.01.T01:CDS
ACTGTTTGGGAAGAAAACAA+AGG 0.691158 3:+90141514 MsG0380016971.01.T01:CDS
AGCTGATAGTGATGGCGATG+GGG 0.696008 3:+90144539 MsG0380016971.01.T01:CDS
TGAAGTAACTGAACAAGACG+CGG 0.710408 3:+90139916 MsG0380016971.01.T01:CDS
GAAAAGATTGAAAACCCTAG+CGG 0.718687 3:-90139785 None:intergenic
AAATAATGGAAGTGATAACG+AGG 0.765529 3:+90143511 MsG0380016971.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATTTCATTTATTTAA+AGG + Chr3:90141561-90141580 MsG0380016971.01.T01:intron 10.0%
!!! GTTTGTTATTTAATATAAAT+GGG + Chr3:90142133-90142152 MsG0380016971.01.T01:intron 10.0%
!!! TTTTTTTCTCAATTTTTTAT+CGG + Chr3:90140618-90140637 MsG0380016971.01.T01:intron 10.0%
!! AAATTAAAATAACTGAATTG+TGG - Chr3:90140822-90140841 None:intergenic 15.0%
!! GCAATGTTAAATTTATTTAT+TGG + Chr3:90144903-90144922 MsG0380016971.01.T01:three_prime_UTR 15.0%
!! TTCAGAATAACAAAAAATTA+GGG - Chr3:90143995-90144014 None:intergenic 15.0%
!!! AATATCAATTTTAGAATACT+TGG - Chr3:90142327-90142346 None:intergenic 15.0%
!!! GGTTTGTTATTTAATATAAA+TGG + Chr3:90142132-90142151 MsG0380016971.01.T01:intron 15.0%
!!! GTTTTTGATTAATTTGATTT+TGG + Chr3:90140281-90140300 MsG0380016971.01.T01:intron 15.0%
!!! TTTTTTGGTATTGATTTTTT+TGG - Chr3:90143689-90143708 None:intergenic 15.0%
!! AAATGACAAATCTGTAATAA+AGG - Chr3:90144816-90144835 None:intergenic 20.0%
!! AATGAAATAAATCTTTGCAA+AGG - Chr3:90141554-90141573 None:intergenic 20.0%
!! AATGACAAATCTGTAATAAA+GGG - Chr3:90144815-90144834 None:intergenic 20.0%
!! AATTAATAATATGTCTGATG+AGG + Chr3:90144497-90144516 MsG0380016971.01.T01:CDS 20.0%
!! ATAGAGAGAGAAATAAAAAA+GGG - Chr3:90139709-90139728 None:intergenic 20.0%
!! ATGAAAATAAAATTTAGCTG+TGG - Chr3:90144665-90144684 None:intergenic 20.0%
!! ATTTATTCGCTAAAATTAAC+AGG - Chr3:90143195-90143214 None:intergenic 20.0%
!! GAAATGCAAAAAAAAGAAAA+AGG - Chr3:90140479-90140498 None:intergenic 20.0%
!! GAGAAAACTTAATTAATGTT+TGG + Chr3:90142975-90142994 MsG0380016971.01.T01:intron 20.0%
!! GTTCAGAATAACAAAAAATT+AGG - Chr3:90143996-90144015 None:intergenic 20.0%
!! TATAGAGAGAGAAATAAAAA+AGG - Chr3:90139710-90139729 None:intergenic 20.0%
!! TCAGAATAACAAAAAATTAG+GGG - Chr3:90143994-90144013 None:intergenic 20.0%
!! TGAAAATAAAATTTAGCTGT+GGG - Chr3:90144664-90144683 None:intergenic 20.0%
!! TTTATTCGCTAAAATTAACA+GGG - Chr3:90143194-90143213 None:intergenic 20.0%
!!! AATAAAAAAGATGATTTGTC+TGG - Chr3:90142279-90142298 None:intergenic 20.0%
!!! AGACAAATCATCTTTTTTAT+TGG + Chr3:90142278-90142297 MsG0380016971.01.T01:intron 20.0%
!!! ATAAATGGGTTAATATCATT+TGG + Chr3:90142147-90142166 MsG0380016971.01.T01:intron 20.0%
!!! ATTTTTTTCTCTCTCAATTT+TGG + Chr3:90140239-90140258 MsG0380016971.01.T01:intron 20.0%
!!! TATATCATTTTTGAATCCAA+AGG + Chr3:90141972-90141991 MsG0380016971.01.T01:intron 20.0%
!!! TGATTTTGGTTATTTTTTCA+GGG + Chr3:90140295-90140314 MsG0380016971.01.T01:intron 20.0%
!!! TGTCTGTATTTTATTCATTT+TGG + Chr3:90142532-90142551 MsG0380016971.01.T01:intron 20.0%
!!! TTGATTTTGGTTATTTTTTC+AGG + Chr3:90140294-90140313 MsG0380016971.01.T01:intron 20.0%
!!! TTTATTTTCCATTTTAGAAG+TGG - Chr3:90142008-90142027 None:intergenic 20.0%
! AACAATCTAAAGAGGAATAT+AGG + Chr3:90141630-90141649 MsG0380016971.01.T01:CDS 25.0%
! AAGATCATCAAACATAAAGA+GGG - Chr3:90143870-90143889 None:intergenic 25.0%
! AATAGATATGAATCTTTGTG+AGG + Chr3:90141727-90141746 MsG0380016971.01.T01:intron 25.0%
! AATTATAAGTCACGCTTATT+GGG - Chr3:90141089-90141108 None:intergenic 25.0%
! ACAATTAAAATCATCCATAC+AGG - Chr3:90140501-90140520 None:intergenic 25.0%
! AGAATAACAAAAAATTAGGG+GGG - Chr3:90143992-90144011 None:intergenic 25.0%
! ATAGATATGAATCTTTGTGA+GGG + Chr3:90141728-90141747 MsG0380016971.01.T01:intron 25.0%
! ATCTACATCTTCACAATTAT+TGG + Chr3:90141824-90141843 MsG0380016971.01.T01:intron 25.0%
! ATGACAAATCTGTAATAAAG+GGG - Chr3:90144814-90144833 None:intergenic 25.0%
! CAATAATAATGTTTACATGC+AGG - Chr3:90144869-90144888 None:intergenic 25.0%
! CAGAATAACAAAAAATTAGG+GGG - Chr3:90143993-90144012 None:intergenic 25.0%
! CTATTCTACTTCTAATTCTA+GGG + Chr3:90139754-90139773 MsG0380016971.01.T01:five_prime_UTR 25.0%
! GAAGATATCTTCATACAAAT+TGG - Chr3:90143102-90143121 None:intergenic 25.0%
! GAATATATGTGATGTATTTG+AGG - Chr3:90142875-90142894 None:intergenic 25.0%
! GCAAACAAAAATAAACATGT+GGG - Chr3:90141250-90141269 None:intergenic 25.0%
! TAAAGGACTGATAATTGAAA+AGG + Chr3:90140207-90140226 MsG0380016971.01.T01:CDS 25.0%
! TAAGGAAGTAGATTTCAATA+AGG + Chr3:90144205-90144224 MsG0380016971.01.T01:CDS 25.0%
! TAGAGAGAGAAATAAAAAAG+GGG - Chr3:90139708-90139727 None:intergenic 25.0%
! TGATAAAATTTCTTCCTTCA+GGG + Chr3:90144364-90144383 MsG0380016971.01.T01:intron 25.0%
! TTCAAGATAGTTCCATAAAA+AGG + Chr3:90142945-90142964 MsG0380016971.01.T01:intron 25.0%
! TTGAACATAATCACATATGT+TGG - Chr3:90140590-90140609 None:intergenic 25.0%
! TTTATTGCAAACTATTTCAG+TGG + Chr3:90141436-90141455 MsG0380016971.01.T01:intron 25.0%
! TTTCAATAACCAAAATGGTA+TGG - Chr3:90141324-90141343 None:intergenic 25.0%
!! AAAATTTTTAACCTGCAAAC+TGG - Chr3:90144258-90144277 None:intergenic 25.0%
!! AAGTAATTGGTTTCAACAAA+AGG - Chr3:90141223-90141242 None:intergenic 25.0%
!! CTTTTCTATGCATTAAATCA+AGG - Chr3:90144449-90144468 None:intergenic 25.0%
!! TAACATTGCTCTAAATTAGA+AGG - Chr3:90144892-90144911 None:intergenic 25.0%
!! TATAGTTGATTGAAGTATCA+TGG + Chr3:90140994-90141013 MsG0380016971.01.T01:intron 25.0%
!! TATGATAGATGCTCTAAATT+AGG + Chr3:90144753-90144772 MsG0380016971.01.T01:three_prime_UTR 25.0%
!! TTCTAACAAAACATGTTTTC+AGG + Chr3:90142030-90142049 MsG0380016971.01.T01:intron 25.0%
!! TTCTCATTGTTTCCTTTTTA+TGG - Chr3:90142960-90142979 None:intergenic 25.0%
!! TTTTATGGAACTATCTTGAA+TGG - Chr3:90142945-90142964 None:intergenic 25.0%
!! TTTTGCAATTAAATGTTGAC+AGG + Chr3:90144411-90144430 MsG0380016971.01.T01:intron 25.0%
!!! ACTGACTTTCATTAATCTTT+TGG + Chr3:90141345-90141364 MsG0380016971.01.T01:intron 25.0%
!!! TATCATCCTTTTATTTCCTT+TGG + Chr3:90143268-90143287 MsG0380016971.01.T01:intron 25.0%
!!! TCTAGAGTTTGACTTTTTTT+GGG + Chr3:90142686-90142705 MsG0380016971.01.T01:intron 25.0%
!!! TTCTAGAGTTTGACTTTTTT+TGG + Chr3:90142685-90142704 MsG0380016971.01.T01:intron 25.0%
!!! TTGCTTTTATGTTAACAGAA+AGG + Chr3:90142447-90142466 MsG0380016971.01.T01:intron 25.0%
!!! TTTTTGGTTTTTAGTTTTGC+CGG + Chr3:90139585-90139604 MsG0380016971.01.T01:five_prime_UTR 25.0%
!!! TTTTTTTTGCATTTCCTGTA+TGG + Chr3:90140484-90140503 MsG0380016971.01.T01:intron 25.0%
AAAAAGCAAACTTCAGAATC+TGG + Chr3:90143395-90143414 MsG0380016971.01.T01:CDS 30.0%
AAAAATACTTGAGACGAGAA+CGG - Chr3:90139551-90139570 None:intergenic 30.0%
AAAGGAAAAGCAAGATACTA+AGG + Chr3:90143781-90143800 MsG0380016971.01.T01:CDS 30.0%
AAGCGTGACTTATAATTCTA+GGG + Chr3:90141092-90141111 MsG0380016971.01.T01:intron 30.0%
AAGGAAAAGCAAGATACTAA+GGG + Chr3:90143782-90143801 MsG0380016971.01.T01:CDS 30.0%
AATCCTCCAAAGGAAATAAA+AGG - Chr3:90143277-90143296 None:intergenic 30.0%
ACAAAAGGTTGCTTATATGT+TGG - Chr3:90141208-90141227 None:intergenic 30.0%
AGAATAGGAAAGATGAGATT+TGG - Chr3:90139741-90139760 None:intergenic 30.0%
AGACTTCAATGCTTAATCTA+GGG + Chr3:90143899-90143918 MsG0380016971.01.T01:intron 30.0%
AGAGAGAGAAATAAAAAAGG+GGG - Chr3:90139707-90139726 None:intergenic 30.0%
AGTTGTAGTTGAGATTCTTA+AGG + Chr3:90144187-90144206 MsG0380016971.01.T01:CDS 30.0%
ATAAAATTTCTTCCTTCAGG+GGG + Chr3:90144366-90144385 MsG0380016971.01.T01:intron 30.0%
CAAGATACAAAAAACTGGAA+AGG + Chr3:90143763-90143782 MsG0380016971.01.T01:CDS 30.0%
CAAGATCATCAAACATAAAG+AGG - Chr3:90143871-90143890 None:intergenic 30.0%
CAGTGTTTCAATAACCAAAA+TGG - Chr3:90141329-90141348 None:intergenic 30.0%
CCTAGAATTAGAAGTAGAAT+AGG - Chr3:90139756-90139775 None:intergenic 30.0%
CCTATTCTACTTCTAATTCT+AGG + Chr3:90139753-90139772 MsG0380016971.01.T01:five_prime_UTR 30.0%
CTAGAACGAATATTCAGAAT+TGG - Chr3:90142671-90142690 None:intergenic 30.0%
CTGATAAAATTTCTTCCTTC+AGG + Chr3:90144363-90144382 MsG0380016971.01.T01:intron 30.0%
GAAGATATCGTGTGAATTTA+GGG + Chr3:90140395-90140414 MsG0380016971.01.T01:intron 30.0%
GAAGATGTAGATTTAATTGC+AGG - Chr3:90141816-90141835 None:intergenic 30.0%
GAATAACAAAAAATTAGGGG+GGG - Chr3:90143991-90144010 None:intergenic 30.0%
GAATTATAAGTCACGCTTAT+TGG - Chr3:90141090-90141109 None:intergenic 30.0%
GATAAAATTTCTTCCTTCAG+GGG + Chr3:90144365-90144384 MsG0380016971.01.T01:intron 30.0%
GGCAAACAAAAATAAACATG+TGG - Chr3:90141251-90141270 None:intergenic 30.0%
GTTACTTGTAATATGCTGTT+TGG + Chr3:90143019-90143038 MsG0380016971.01.T01:intron 30.0%
TAAAAGTAGTAAGAAGACCA+AGG + Chr3:90144136-90144155 MsG0380016971.01.T01:CDS 30.0%
TAAACAAGACTTCCAAATAC+TGG - Chr3:90140933-90140952 None:intergenic 30.0%
TAAGCGTGACTTATAATTCT+AGG + Chr3:90141091-90141110 MsG0380016971.01.T01:intron 30.0%
TACTTCCAAAAAATCTGTGA+AGG + Chr3:90143580-90143599 MsG0380016971.01.T01:CDS 30.0%
TAGACTTCAATGCTTAATCT+AGG + Chr3:90143898-90143917 MsG0380016971.01.T01:intron 30.0%
TAGATATGAATCTTTGTGAG+GGG + Chr3:90141729-90141748 MsG0380016971.01.T01:intron 30.0%
TCATCAATCAGTTAAGACAA+AGG - Chr3:90142248-90142267 None:intergenic 30.0%
TGAAGATATCGTGTGAATTT+AGG + Chr3:90140394-90140413 MsG0380016971.01.T01:intron 30.0%
TGCAGAAAATAGAATCTTGT+GGG + Chr3:90144634-90144653 MsG0380016971.01.T01:three_prime_UTR 30.0%
TGCTCAAAAGTAACTATGTA+AGG - Chr3:90140366-90140385 None:intergenic 30.0%
TGTTATGTGTATGGTATTAG+TGG + Chr3:90141370-90141389 MsG0380016971.01.T01:intron 30.0%
TTCAATTATCAGTCCTTTAC+TGG - Chr3:90140206-90140225 None:intergenic 30.0%
TTCATCATCATCATCTTTCT+CGG - Chr3:90139990-90140009 None:intergenic 30.0%
TTTAATGCATAGAAAAGCAG+AGG + Chr3:90144452-90144471 MsG0380016971.01.T01:CDS 30.0%
! AAAGATGATGATGATGAAGA+TGG + Chr3:90139992-90140011 MsG0380016971.01.T01:CDS 30.0%
! AAAGCTTTGGTAGGTATATT+TGG + Chr3:90144711-90144730 MsG0380016971.01.T01:three_prime_UTR 30.0%
! AAATAATGGAAGTGATAACG+AGG + Chr3:90143511-90143530 MsG0380016971.01.T01:CDS 30.0%
! ATGTTGACAGGTAAACATTT+TGG + Chr3:90144423-90144442 MsG0380016971.01.T01:intron 30.0%
! CTGAAGGAAGAAATTTTATC+AGG - Chr3:90144365-90144384 None:intergenic 30.0%
! CTTTTACCTTTACCTACAAT+TGG - Chr3:90144122-90144141 None:intergenic 30.0%
! GAAAGATGAGATTTGGAATT+GGG - Chr3:90139734-90139753 None:intergenic 30.0%
! GGTTCTAATTAAAGTCAATC+AGG - Chr3:90143173-90143192 None:intergenic 30.0%
! TAGAGCATCTATCATAGAAA+AGG - Chr3:90144749-90144768 None:intergenic 30.0%
! TGATTTGGATAGTTGTATTG+TGG + Chr3:90142771-90142790 MsG0380016971.01.T01:intron 30.0%
! TTCAAGTACCACTTCTAAAA+TGG + Chr3:90141997-90142016 MsG0380016971.01.T01:intron 30.0%
! TTCACACTACTCTTGTTTAT+TGG - Chr3:90141937-90141956 None:intergenic 30.0%
! TTTTGAATATGTCTTGATGC+AGG + Chr3:90144296-90144315 MsG0380016971.01.T01:intron 30.0%
!! GACATCTGTCTTTTTCATTA+TGG + Chr3:90140869-90140888 MsG0380016971.01.T01:intron 30.0%
!! TAACAAAACATGTTTTCAGG+AGG + Chr3:90142033-90142052 MsG0380016971.01.T01:intron 30.0%
!! TTAAGCATTGAAGTCTATAG+AGG - Chr3:90143895-90143914 None:intergenic 30.0%
!!! CTTCTTTTTTTTCTTTCTCC+CGG - Chr3:90139607-90139626 None:intergenic 30.0%
!!! CTTTCCAGTTTTTTGTATCT+TGG - Chr3:90143765-90143784 None:intergenic 30.0%
!!! TCTCTCAATTTTGGTTTTTG+AGG + Chr3:90140248-90140267 MsG0380016971.01.T01:intron 30.0%
!!! TTTTGGTTTTTAGTTTTGCC+GGG + Chr3:90139586-90139605 MsG0380016971.01.T01:five_prime_UTR 30.0%
AAAAAAGTCAATTACCGAGC+AGG + Chr3:90143703-90143722 MsG0380016971.01.T01:CDS 35.0%
AAAACAGAGAACAAGGGTAA+AGG + Chr3:90141852-90141871 MsG0380016971.01.T01:CDS 35.0%
AAACAAGAGTAGTGTGAAGA+AGG + Chr3:90141939-90141958 MsG0380016971.01.T01:CDS 35.0%
AAAGCAAGATACTAAGGGAA+AGG + Chr3:90143787-90143806 MsG0380016971.01.T01:CDS 35.0%
AAATCTGTAATAAAGGGGTG+CGG - Chr3:90144809-90144828 None:intergenic 35.0%
AAGTGGTACTTGAATTCCTT+TGG - Chr3:90141991-90142010 None:intergenic 35.0%
AATACAGACAATACCTTTGC+AGG - Chr3:90142522-90142541 None:intergenic 35.0%
AATGTCAGAACCTGATTGAA+AGG + Chr3:90142596-90142615 MsG0380016971.01.T01:intron 35.0%
ACAAATATGTGTCACCAGTA+TGG - Chr3:90140553-90140572 None:intergenic 35.0%
ACATCTTCACAATTATTGGC+AGG + Chr3:90141828-90141847 MsG0380016971.01.T01:intron 35.0%
ACATGATGATCTGATCCTTA+TGG + Chr3:90141780-90141799 MsG0380016971.01.T01:intron 35.0%
ACTGAATTGTGGTCAAATCT+AGG - Chr3:90140811-90140830 None:intergenic 35.0%
ACTGTTTGGGAAGAAAACAA+AGG + Chr3:90141514-90141533 MsG0380016971.01.T01:CDS 35.0%
AGCGTGACTTATAATTCTAG+GGG + Chr3:90141093-90141112 MsG0380016971.01.T01:intron 35.0%
AGGCAATTAGACATACCATT+AGG - Chr3:90140346-90140365 None:intergenic 35.0%
ATACTCACATGACCAGTATT+TGG + Chr3:90140918-90140937 MsG0380016971.01.T01:intron 35.0%
ATCACCATCACAACATTGAA+AGG - Chr3:90142755-90142774 None:intergenic 35.0%
ATGCTCCATAGTATACTGTT+TGG + Chr3:90141500-90141519 MsG0380016971.01.T01:CDS 35.0%
ATTGCAGCTGTTAAGAACAA+TGG + Chr3:90141017-90141036 MsG0380016971.01.T01:intron 35.0%
CAATAACCAAAATGGTATGG+CGG - Chr3:90141321-90141340 None:intergenic 35.0%
CTGAATTGTGGTCAAATCTA+GGG - Chr3:90140810-90140829 None:intergenic 35.0%
CTGCAGAAAATAGAATCTTG+TGG + Chr3:90144633-90144652 MsG0380016971.01.T01:three_prime_UTR 35.0%
GAAAAGATTGAAAACCCTAG+CGG - Chr3:90139788-90139807 None:intergenic 35.0%
GACTTCAATGCTTAATCTAG+GGG + Chr3:90143900-90143919 MsG0380016971.01.T01:intron 35.0%
GAGAGAGAAATAAAAAAGGG+GGG - Chr3:90139706-90139725 None:intergenic 35.0%
GCAACCAAGATACAAAAAAC+TGG + Chr3:90143758-90143777 MsG0380016971.01.T01:CDS 35.0%
GTCAGGTTAACAATCTAAAG+AGG + Chr3:90141622-90141641 MsG0380016971.01.T01:intron 35.0%
GTCTATACAGGTTAAAGCTT+TGG + Chr3:90144698-90144717 MsG0380016971.01.T01:three_prime_UTR 35.0%
GTTACTTCAACTTCTTCTTC+TGG - Chr3:90139905-90139924 None:intergenic 35.0%
TACATAACAATAGTGCACTG+CGG - Chr3:90142570-90142589 None:intergenic 35.0%
TCACTTATTTCACACACACT+AGG - Chr3:90143323-90143342 None:intergenic 35.0%
TCAGAAAGAACTAAGTAAGC+AGG - Chr3:90144097-90144116 None:intergenic 35.0%
TCATAACAGAAATCCTCCAA+AGG - Chr3:90143287-90143306 None:intergenic 35.0%
TCCAAAAAATCTGTGAAGGA+GGG + Chr3:90143584-90143603 MsG0380016971.01.T01:CDS 35.0%
TCTTCCCAAACAGTATACTA+TGG - Chr3:90141508-90141527 None:intergenic 35.0%
TCTTCTTGCTGAAAAAGAAC+AGG + Chr3:90142111-90142130 MsG0380016971.01.T01:CDS 35.0%
TGACAAGCATTATGCATGTA+CGG - Chr3:90141272-90141291 None:intergenic 35.0%
TGCTCCATAGTATACTGTTT+GGG + Chr3:90141501-90141520 MsG0380016971.01.T01:CDS 35.0%
TGTATTGTGGATTTCTTACC+TGG + Chr3:90142784-90142803 MsG0380016971.01.T01:intron 35.0%
TTACTCTTCATCTTCATCAC+TGG - Chr3:90144592-90144611 None:intergenic 35.0%
TTCACATGCATACATCTGTA+GGG + Chr3:90140840-90140859 MsG0380016971.01.T01:intron 35.0%
TTCCAAAAAATCTGTGAAGG+AGG + Chr3:90143583-90143602 MsG0380016971.01.T01:CDS 35.0%
TTCTTTCTGATGCCAATTGT+AGG + Chr3:90144107-90144126 MsG0380016971.01.T01:intron 35.0%
TTTCACATGCATACATCTGT+AGG + Chr3:90140839-90140858 MsG0380016971.01.T01:intron 35.0%
! ACATGTGGGCTATAAGTAAT+TGG - Chr3:90141236-90141255 None:intergenic 35.0%
! ATACAGGTTAAAGCTTTGGT+AGG + Chr3:90144702-90144721 MsG0380016971.01.T01:three_prime_UTR 35.0%
! GATTTCTTACCTGGTTTGTA+AGG + Chr3:90142793-90142812 MsG0380016971.01.T01:intron 35.0%
! GGAAAGATGAGATTTGGAAT+TGG - Chr3:90139735-90139754 None:intergenic 35.0%
! TATCTAATTGACTCTACCTG+TGG + Chr3:90141123-90141142 MsG0380016971.01.T01:intron 35.0%
! TCAATGTTGTGATGGTGATT+TGG + Chr3:90142756-90142775 MsG0380016971.01.T01:intron 35.0%
! TTCAACTTCTTCTTCTGGTT+TGG - Chr3:90139900-90139919 None:intergenic 35.0%
! TTTTCCCTTTTCTTCATCCA+TGG + Chr3:90139814-90139833 MsG0380016971.01.T01:exon 35.0%
! TTTTCCTATGTTATGAGCAC+AGG + Chr3:90140962-90140981 MsG0380016971.01.T01:intron 35.0%
!! CATCCTTTTATTTCCTTTGG+AGG + Chr3:90143271-90143290 MsG0380016971.01.T01:intron 35.0%
!! TCAACTTCTTCTTCTGGTTT+GGG - Chr3:90139899-90139918 None:intergenic 35.0%
!! TTGGAAGTCTTGTTTACATC+TGG + Chr3:90140937-90140956 MsG0380016971.01.T01:intron 35.0%
!! TTTACAGAAAGTGTCATCCA+AGG - Chr3:90142921-90142940 None:intergenic 35.0%
!!! CTGAAGTTTGCTTTTTCTTC+TGG - Chr3:90143391-90143410 None:intergenic 35.0%
!!! GTTTTCGACTTGTTTTGGTT+TGG - Chr3:90139861-90139880 None:intergenic 35.0%
!!! GTTTTTTGTATCTTGGTTGC+AGG - Chr3:90143758-90143777 None:intergenic 35.0%
!!! TGCTCGGTAATTGACTTTTT+TGG - Chr3:90143704-90143723 None:intergenic 35.0%
!!! TGGAGTTTTTTCACTGCTTT+TGG - Chr3:90143669-90143688 None:intergenic 35.0%
!!! TTTTGGTTTGGTATCGTCTA+GGG - Chr3:90139849-90139868 None:intergenic 35.0%
AAACTTCGAAGGTGAAGGTT+CGG - Chr3:90140170-90140189 None:intergenic 40.0%
AAAGCCTTCTGATGTTGAAG+AGG + Chr3:90143427-90143446 MsG0380016971.01.T01:CDS 40.0%
AACATCAGTAGTAGCATGTG+GGG - Chr3:90142092-90142111 None:intergenic 40.0%
AACCTGTATAGACAGCTAAC+AGG - Chr3:90144691-90144710 None:intergenic 40.0%
AGAACATCAGTAGTAGCATG+TGG - Chr3:90142094-90142113 None:intergenic 40.0%
AGAGGTCTTCTTAACAGATG+TGG - Chr3:90143636-90143655 None:intergenic 40.0%
ATGTCTGATGAGGAAGATGA+AGG + Chr3:90144507-90144526 MsG0380016971.01.T01:CDS 40.0%
ATTGTGCTTGATCACGACTT+TGG + Chr3:90142711-90142730 MsG0380016971.01.T01:intron 40.0%
CAAGAAATTATTCCCCCTGA+AGG - Chr3:90144381-90144400 None:intergenic 40.0%
CACTGCAACATCTTCATCTT+GGG - Chr3:90143489-90143508 None:intergenic 40.0%
CAGCTCAAGGATATTCCTAA+TGG + Chr3:90140328-90140347 MsG0380016971.01.T01:CDS 40.0%
CAGTTCAGCATGACAACTAA+AGG - Chr3:90143956-90143975 None:intergenic 40.0%
CTGATGCCAATTGTAGGTAA+AGG + Chr3:90144113-90144132 MsG0380016971.01.T01:intron 40.0%
GAACATCAGTAGTAGCATGT+GGG - Chr3:90142093-90142112 None:intergenic 40.0%
GACACCTTTCAATGTTGTGA+TGG + Chr3:90142748-90142767 MsG0380016971.01.T01:intron 40.0%
GATGTTGCAGTGGCAAATAA+TGG + Chr3:90143497-90143516 MsG0380016971.01.T01:CDS 40.0%
GCAATTCTTTACCAGTTTGC+AGG + Chr3:90144244-90144263 MsG0380016971.01.T01:intron 40.0%
GCAGGAAAAACAGAGAACAA+GGG + Chr3:90141846-90141865 MsG0380016971.01.T01:intron 40.0%
GCAGGTTAATATCAGCCATA+AGG - Chr3:90141798-90141817 None:intergenic 40.0%
GCGTGACTTATAATTCTAGG+GGG + Chr3:90141094-90141113 MsG0380016971.01.T01:intron 40.0%
GGAAAAAGATCGTACCAAGT+TGG - Chr3:90144344-90144363 None:intergenic 40.0%
GTAGCCATGGATGAAGAAAA+GGG - Chr3:90139821-90139840 None:intergenic 40.0%
GTATACTATGGAGCATATGC+AGG - Chr3:90141496-90141515 None:intergenic 40.0%
GTCTGTTTGTGTCTGTTCAT+TGG + Chr3:90140427-90140446 MsG0380016971.01.T01:intron 40.0%
TAAGAAGCTGCAGAAAGAAC+TGG - Chr3:90143230-90143249 None:intergenic 40.0%
TCATCCTCTTCAACATCAGA+AGG - Chr3:90143434-90143453 None:intergenic 40.0%
TGAACTTGACCTTACAAACC+AGG - Chr3:90142805-90142824 None:intergenic 40.0%
TGAAGTAACTGAACAAGACG+CGG + Chr3:90139916-90139935 MsG0380016971.01.T01:CDS 40.0%
TGCAAAGCTGTTGGAATTTC+TGG + Chr3:90142063-90142082 MsG0380016971.01.T01:CDS 40.0%
TTGACGTGTTTGTGTTGTGT+CGG + Chr3:90140643-90140662 MsG0380016971.01.T01:intron 40.0%
TTTCATGACCATATGTCCAC+AGG - Chr3:90141142-90141161 None:intergenic 40.0%
! AAAAGATCGTACCAAGTTGG+CGG - Chr3:90144341-90144360 None:intergenic 40.0%
! AATCTGTAATAAAGGGGTGC+GGG - Chr3:90144808-90144827 None:intergenic 40.0%
! AATGGAAGTGATAACGAGGT+GGG + Chr3:90143515-90143534 MsG0380016971.01.T01:CDS 40.0%
! AGGAATATAGGCCAGTTTTC+TGG + Chr3:90141642-90141661 MsG0380016971.01.T01:CDS 40.0%
! CTTTTGGCGTGTTATGTGTA+TGG + Chr3:90141361-90141380 MsG0380016971.01.T01:intron 40.0%
! GTACTTGTTACTCTACTGGT+TGG + Chr3:90143922-90143941 MsG0380016971.01.T01:intron 40.0%
! GTGATGTATTTGAGGCTGAA+TGG - Chr3:90142867-90142886 None:intergenic 40.0%
! GTGCGGGTTACATCTAAATA+TGG - Chr3:90144792-90144811 None:intergenic 40.0%
! TAATGGAAGTGATAACGAGG+TGG + Chr3:90143514-90143533 MsG0380016971.01.T01:CDS 40.0%
! TGTGGATTTAGCTTCAGCTT+TGG - Chr3:90143618-90143637 None:intergenic 40.0%
! TGTTGTGTCGGTGCTTTAAA+GGG + Chr3:90140655-90140674 MsG0380016971.01.T01:intron 40.0%
! TTATGTGTGGGCTGAAAATG+AGG + Chr3:90141665-90141684 MsG0380016971.01.T01:CDS 40.0%
! TTTGGTATCGTCTAGGGTTT+CGG - Chr3:90139843-90139862 None:intergenic 40.0%
! TTTTGTCCGCCATACCATTT+TGG + Chr3:90141312-90141331 MsG0380016971.01.T01:intron 40.0%
!! ACACCTTTGCTATTCCTGAA+TGG + Chr3:90141597-90141616 MsG0380016971.01.T01:intron 40.0%
!! GAAGTACTCTTGTGAGCTTT+TGG - Chr3:90143566-90143585 None:intergenic 40.0%
!! GCTTCGTTTTCGACTTGTTT+TGG - Chr3:90139866-90139885 None:intergenic 40.0%
!! TCAGGAATAGCAAAGGTGTT+AGG - Chr3:90141596-90141615 None:intergenic 40.0%
!! TTCTGGTTTGGGTTCATCTT+TGG - Chr3:90139888-90139907 None:intergenic 40.0%
!!! ACCCTCCTTCACAGATTTTT+TGG - Chr3:90143588-90143607 None:intergenic 40.0%
!!! CCAGTTTTCTGGTTATGTGT+GGG + Chr3:90141653-90141672 MsG0380016971.01.T01:CDS 40.0%
!!! GTTTTGGTTTGGTATCGTCT+AGG - Chr3:90139850-90139869 None:intergenic 40.0%
!!! TGGTTATTTTTTCAGGGACG+TGG + Chr3:90140301-90140320 MsG0380016971.01.T01:intron 40.0%
AAATTAGGGGGGGAACAAAC+AGG - Chr3:90143981-90144000 None:intergenic 45.0%
AACGAGGTGGGTAAATCAGA+GGG + Chr3:90143527-90143546 MsG0380016971.01.T01:CDS 45.0%
AAGAGAAGCAGAATCCTGCT+CGG - Chr3:90143720-90143739 None:intergenic 45.0%
AAGCAAAACTGCAAAGGCTG+CGG + Chr3:90143814-90143833 MsG0380016971.01.T01:CDS 45.0%
AAGTGTCATCCAAGGCAGAA+TGG - Chr3:90142913-90142932 None:intergenic 45.0%
AGAGAACAAGGGTAAAGGAG+AGG + Chr3:90141857-90141876 MsG0380016971.01.T01:CDS 45.0%
AGCATATGCAGGTTGTCATC+AGG - Chr3:90141485-90141504 None:intergenic 45.0%
CCAAGATGAAGATGTTGCAG+TGG + Chr3:90143487-90143506 MsG0380016971.01.T01:CDS 45.0%
CCACCATTCAGGAATAGCAA+AGG - Chr3:90141603-90141622 None:intergenic 45.0%
CCACTGCAACATCTTCATCT+TGG - Chr3:90143490-90143509 None:intergenic 45.0%
CCCACACATAACCAGAAAAC+TGG - Chr3:90141656-90141675 None:intergenic 45.0%
CTCCTGTTAGCTGTCTATAC+AGG + Chr3:90144686-90144705 MsG0380016971.01.T01:three_prime_UTR 45.0%
CTTCACCTTCGAAGTTTGGA+AGG + Chr3:90140173-90140192 MsG0380016971.01.T01:CDS 45.0%
CTTCCAAACTTCGAAGGTGA+AGG - Chr3:90140175-90140194 None:intergenic 45.0%
GAACCTTCACCTTCGAAGTT+TGG + Chr3:90140169-90140188 MsG0380016971.01.T01:CDS 45.0%
GAAGACCTTCCAAACTTCGA+AGG - Chr3:90140181-90140200 None:intergenic 45.0%
GAAGATGCTGGTGAGAAGAA+GGG + Chr3:90140052-90140071 MsG0380016971.01.T01:CDS 45.0%
GCATAGAAAAGCAGAGGTGA+AGG + Chr3:90144458-90144477 MsG0380016971.01.T01:CDS 45.0%
GGAAGGTCTTCTTCCAGTAA+AGG + Chr3:90140190-90140209 MsG0380016971.01.T01:CDS 45.0%
GGCAGGAAAAACAGAGAACA+AGG + Chr3:90141845-90141864 MsG0380016971.01.T01:intron 45.0%
GGTAGCCATGGATGAAGAAA+AGG - Chr3:90139822-90139841 None:intergenic 45.0%
TAACGAGGTGGGTAAATCAG+AGG + Chr3:90143526-90143545 MsG0380016971.01.T01:CDS 45.0%
TCATCCAAGGCAGAATGGTT+GGG - Chr3:90142908-90142927 None:intergenic 45.0%
TGACTCTACCTGTGGACATA+TGG + Chr3:90141131-90141150 MsG0380016971.01.T01:intron 45.0%
TGATGAGGAAGATGAAGGTG+AGG + Chr3:90144512-90144531 MsG0380016971.01.T01:CDS 45.0%
TGTGCCTGTGCTCATAACAT+AGG - Chr3:90140969-90140988 None:intergenic 45.0%
TGTTAACCTGACCACCATTC+AGG - Chr3:90141614-90141633 None:intergenic 45.0%
! AAGCTGATAGTGATGGCGAT+GGG + Chr3:90144538-90144557 MsG0380016971.01.T01:CDS 45.0%
! GAGGAAGAAGCTGATAGTGA+TGG + Chr3:90144531-90144550 MsG0380016971.01.T01:CDS 45.0%
! GTGTTGTGTCGGTGCTTTAA+AGG + Chr3:90140654-90140673 MsG0380016971.01.T01:intron 45.0%
!! AGGGGTACTTGTTACTCTAC+TGG + Chr3:90143918-90143937 MsG0380016971.01.T01:intron 45.0%
!! AGTTTGGTGTGTGACACGTT+GGG - Chr3:90140528-90140547 None:intergenic 45.0%
!! CCTTTGCTATTCCTGAATGG+TGG + Chr3:90141600-90141619 MsG0380016971.01.T01:intron 45.0%
!! TTCTCCAGGAGATTTGCTAG+AGG - Chr3:90142496-90142515 None:intergenic 45.0%
!!! GCCAGTTTTCTGGTTATGTG+TGG + Chr3:90141652-90141671 MsG0380016971.01.T01:CDS 45.0%
!!! ATATTTTTCTTTTTTATATA+TGG + Chr3:90144049-90144068 MsG0380016971.01.T01:intron 5.0%
!!! TTGATTTTATTTTTTATTTT+TGG + Chr3:90139569-90139588 MsG0380016971.01.T01:five_prime_UTR 5.0%
AACTAGGGAAAGGAAGACGG+TGG + Chr3:90140135-90140154 MsG0380016971.01.T01:CDS 50.0%
AACTGCAAAGGCTGCGGTTA+AGG + Chr3:90143820-90143839 MsG0380016971.01.T01:CDS 50.0%
AAGGCTGCGGTTAAGGATCA+AGG + Chr3:90143827-90143846 MsG0380016971.01.T01:CDS 50.0%
ACACACCAAACTCGCCATAC+TGG + Chr3:90140536-90140555 MsG0380016971.01.T01:intron 50.0%
ACCGTCTTCCTTTCCCTAGT+TGG - Chr3:90140136-90140155 None:intergenic 50.0%
ACCTTTGCAGGTGTTTCTCC+AGG - Chr3:90142510-90142529 None:intergenic 50.0%
CCACGTGCAACCTTTCAATC+AGG - Chr3:90142609-90142628 None:intergenic 50.0%
CCTGATTGAAAGGTTGCACG+TGG + Chr3:90142606-90142625 MsG0380016971.01.T01:intron 50.0%
CTAGGGTTTCTCTTCCGCTA+GGG + Chr3:90139771-90139790 MsG0380016971.01.T01:five_prime_UTR 50.0%
CTATCACTCGTCGGAGTAAC+CGG - Chr3:90140112-90140131 None:intergenic 50.0%
GACGAGTGATAGGCCAACTA+GGG + Chr3:90140120-90140139 MsG0380016971.01.T01:CDS 50.0%
GATGTCGATGCGGGTAAAGA+TGG + Chr3:90144561-90144580 MsG0380016971.01.T01:CDS 50.0%
GCAACCTCTAGCAAATCTCC+TGG + Chr3:90142489-90142508 MsG0380016971.01.T01:CDS 50.0%
GCCAACTAGGGAAAGGAAGA+CGG + Chr3:90140132-90140151 MsG0380016971.01.T01:CDS 50.0%
GCTATTCCTGAATGGTGGTC+AGG + Chr3:90141605-90141624 MsG0380016971.01.T01:intron 50.0%
GGAACTGTCTGCAAAGCTGT+TGG + Chr3:90142054-90142073 MsG0380016971.01.T01:CDS 50.0%
GGAAGATGCTGGTGAGAAGA+AGG + Chr3:90140051-90140070 MsG0380016971.01.T01:CDS 50.0%
GGCTGCAAGCAAAACTGCAA+AGG + Chr3:90143808-90143827 MsG0380016971.01.T01:CDS 50.0%
GTCATCCAAGGCAGAATGGT+TGG - Chr3:90142909-90142928 None:intergenic 50.0%
GTCGTCAGAGAAGAAGAGTC+CGG + Chr3:90140090-90140109 MsG0380016971.01.T01:CDS 50.0%
GTGATAGGCCAACTAGGGAA+AGG + Chr3:90140125-90140144 MsG0380016971.01.T01:CDS 50.0%
TACTCCCAACCATTCTGCCT+TGG + Chr3:90142901-90142920 MsG0380016971.01.T01:intron 50.0%
TCCTGGAGAAACACCTGCAA+AGG + Chr3:90142506-90142525 MsG0380016971.01.T01:CDS 50.0%
TGTCACCAGTATGGCGAGTT+TGG - Chr3:90140544-90140563 None:intergenic 50.0%
TGTGATATCCTCCGCCAACT+TGG + Chr3:90144327-90144346 MsG0380016971.01.T01:CDS 50.0%
! AGCTGATAGTGATGGCGATG+GGG + Chr3:90144539-90144558 MsG0380016971.01.T01:CDS 50.0%
! CGATGCTGATGCTGATGATG+AGG + Chr3:90140024-90140043 MsG0380016971.01.T01:CDS 50.0%
! CTAGTTGGCCTATCACTCGT+CGG - Chr3:90140121-90140140 None:intergenic 50.0%
! GAAGCTGATAGTGATGGCGA+TGG + Chr3:90144537-90144556 MsG0380016971.01.T01:CDS 50.0%
! GCTTTTGGCAGCTTTTGCAG+AGG - Chr3:90143654-90143673 None:intergenic 50.0%
! TCTAGGGTTTCTCTTCCGCT+AGG + Chr3:90139770-90139789 MsG0380016971.01.T01:five_prime_UTR 50.0%
! TGATGCTGATGATGAGGAGG+AGG + Chr3:90140030-90140049 MsG0380016971.01.T01:CDS 50.0%
! TGCTGATGCTGATGATGAGG+AGG + Chr3:90140027-90140046 MsG0380016971.01.T01:CDS 50.0%
!! GAGTTTGGTGTGTGACACGT+TGG - Chr3:90140529-90140548 None:intergenic 50.0%
!! GGTTGCAGGTTGATCTGACT+TGG - Chr3:90143744-90143763 None:intergenic 50.0%
!! GTTTGGTGTGTGACACGTTG+GGG - Chr3:90140527-90140546 None:intergenic 50.0%
AGACCAAGGTAGAGCCGAGT+AGG + Chr3:90144150-90144169 MsG0380016971.01.T01:CDS 55.0%
CGACGAGTGATAGGCCAACT+AGG + Chr3:90140119-90140138 MsG0380016971.01.T01:CDS 55.0%
CGGTTACTCCGACGAGTGAT+AGG + Chr3:90140110-90140129 MsG0380016971.01.T01:CDS 55.0%
GATGAGGAGGAGGAAGATGC+TGG + Chr3:90140040-90140059 MsG0380016971.01.T01:CDS 55.0%
GGTGGGTAAATCAGAGGGAG+AGG + Chr3:90143532-90143551 MsG0380016971.01.T01:CDS 55.0%
! AGATCGTACCAAGTTGGCGG+AGG - Chr3:90144338-90144357 None:intergenic 55.0%
! GTCTAGGGTTTCGGTAGCCA+TGG - Chr3:90139834-90139853 None:intergenic 55.0%
CAAGGTAGAGCCGAGTAGGC+AGG + Chr3:90144154-90144173 MsG0380016971.01.T01:CDS 60.0%
CTGCCTACTCGGCTCTACCT+TGG - Chr3:90144156-90144175 None:intergenic 60.0%
GCGTGCATGTCCTGCCTACT+CGG - Chr3:90144167-90144186 None:intergenic 60.0%
GGGACGTGGTACTCAGCTCA+AGG + Chr3:90140315-90140334 MsG0380016971.01.T01:intron 60.0%
TGGCGATGGGGATGTCGATG+CGG + Chr3:90144551-90144570 MsG0380016971.01.T01:CDS 60.0%
GGCGATGGGGATGTCGATGC+GGG + Chr3:90144552-90144571 MsG0380016971.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90139476 90144925 90139476 ID=MsG0380016971.01;Name=MsG0380016971.01
Chr3 mRNA 90139476 90144925 90139476 ID=MsG0380016971.01.T01;Parent=MsG0380016971.01;Name=MsG0380016971.01.T01;_AED=0.30;_eAED=0.30;_QI=357|1|1|1|1|1|11|314|529
Chr3 exon 90139476 90140228 90139476 ID=MsG0380016971.01.T01:exon:25244;Parent=MsG0380016971.01.T01
Chr3 exon 90140316 90140349 90140316 ID=MsG0380016971.01.T01:exon:25245;Parent=MsG0380016971.01.T01
Chr3 exon 90141456 90141535 90141456 ID=MsG0380016971.01.T01:exon:25246;Parent=MsG0380016971.01.T01
Chr3 exon 90141627 90141686 90141627 ID=MsG0380016971.01.T01:exon:25247;Parent=MsG0380016971.01.T01
Chr3 exon 90141850 90141960 90141850 ID=MsG0380016971.01.T01:exon:25248;Parent=MsG0380016971.01.T01
Chr3 exon 90142052 90142132 90142052 ID=MsG0380016971.01.T01:exon:25249;Parent=MsG0380016971.01.T01
Chr3 exon 90142465 90142527 90142465 ID=MsG0380016971.01.T01:exon:25250;Parent=MsG0380016971.01.T01
Chr3 exon 90143392 90143848 90143392 ID=MsG0380016971.01.T01:exon:25251;Parent=MsG0380016971.01.T01
Chr3 exon 90144129 90144226 90144129 ID=MsG0380016971.01.T01:exon:25252;Parent=MsG0380016971.01.T01
Chr3 exon 90144318 90144348 90144318 ID=MsG0380016971.01.T01:exon:25253;Parent=MsG0380016971.01.T01
Chr3 exon 90144433 90144925 90144433 ID=MsG0380016971.01.T01:exon:25254;Parent=MsG0380016971.01.T01
Chr3 five_prime_UTR 90139476 90139832 90139476 ID=MsG0380016971.01.T01:five_prime_utr;Parent=MsG0380016971.01.T01
Chr3 CDS 90139833 90140228 90139833 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90140316 90140349 90140316 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90141456 90141535 90141456 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90141627 90141686 90141627 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90141850 90141960 90141850 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90142052 90142132 90142052 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90142465 90142527 90142465 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90143392 90143848 90143392 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90144129 90144226 90144129 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90144318 90144348 90144318 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 CDS 90144433 90144611 90144433 ID=MsG0380016971.01.T01:cds;Parent=MsG0380016971.01.T01
Chr3 three_prime_UTR 90144612 90144925 90144612 ID=MsG0380016971.01.T01:three_prime_utr;Parent=MsG0380016971.01.T01
Gene Sequence

>MsG0380016971.01.T01

ATGGCTACCGAAACCCTAGACGATACCAAACCAAAACAAGTCGAAAACGAAGCCAAAGATGAACCCAAACCAGAAGAAGAAGTTGAAGTAACTGAACAAGACGCGGAAATTGCTGAATCTGATGAGAAGAAAGAGATCGATGAACATGAAGATTCCGAGAAAGATGATGATGATGAAGATGGAGACGAAGACGATGCTGATGCTGATGATGAGGAGGAGGAAGATGCTGGTGAGAAGAAGGGTGTGAAGAAAGAAGCGTCGTCAGAGAAGAAGAGTCCGGTTACTCCGACGAGTGATAGGCCAACTAGGGAAAGGAAGACGGTGGAGCGATACTCCGAACCTTCACCTTCGAAGTTTGGAAGGTCTTCTTCCAGTAAAGGACTGATAATTGAAAAGGGACGTGGTACTCAGCTCAAGGATATTCCTAATGTGGCTTTCAAGTTGTCAAAGAGAAAACCTGATGACAACCTGCATATGCTCCATAGTATACTGTTTGGGAAGAAAACAAAGGTTAACAATCTAAAGAGGAATATAGGCCAGTTTTCTGGTTATGTGTGGGCTGAAAATGAGGAAAAACAGAGAACAAGGGTAAAGGAGAGGATTGACAAATGTGTGAAAGAAAAATTGATTGTCTTCTGCGATGTTCTTAATATTCCAATAAACAAGAGTAGTGTGAAGAAGGAGGAACTGTCTGCAAAGCTGTTGGAATTTCTGGAGTCCCCACATGCTACTACTGATGTTCTTCTTGCTGAAAAAGAACAGAAAGGTAAGAAGCGAGTTAGAAAAGCAACCTCTAGCAAATCTCCTGGAGAAACACCTGCAAAGAAGAAAAAGCAAACTTCAGAATCTGGAAAAAAGCGAAAGCCTTCTGATGTTGAAGAGGATGACCAAGCTGAACTTTCTGATGCAAAAGATGAGTCCCAAGATGAAGATGTTGCAGTGGCAAATAATGGAAGTGATAACGAGGTGGGTAAATCAGAGGGAGAGGAAGATACACCAAAAGCTCACAAGAGTACTTCCAAAAAATCTGTGAAGGAGGGTTCAGTTGCCAAAGCTGAAGCTAAATCCACATCTGTTAAGAAGACCTCTGCAAAAGCTGCCAAAAGCAGTGAAAAAACTCCAAAAAAATCAATACCAAAAAAGTCAATTACCGAGCAGGATTCTGCTTCTCTTTCCAAGTCAGATCAACCTGCAACCAAGATACAAAAAACTGGAAAGGAAAAGCAAGATACTAAGGGAAAGGCTGCAAGCAAAACTGCAAAGGCTGCGGTTAAGGATCAAGGTAAAGGTAAAAGTAGTAAGAAGACCAAGGTAGAGCCGAGTAGGCAGGACATGCACGCAGTTGTAGTTGAGATTCTTAAGGAAGTAGATTTCAATAAGGCAACTTTGTGTGATATCCTCCGCCAACTTGGTAAACATTTTGGCCTTGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATCATCACAGATGTAATTAATAATATGTCTGATGAGGAAGATGAAGGTGAGGAAGAAGCTGATAGTGATGGCGATGGGGATGTCGATGCGGGTAAAGATGGCGACGCCAGTGATGAAGATGAAGAGTAA

Protein sequence

>MsG0380016971.01.T01

MATETLDDTKPKQVENEAKDEPKPEEEVEVTEQDAEIAESDEKKEIDEHEDSEKDDDDEDGDEDDADADDEEEEDAGEKKGVKKEASSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHSILFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSSKSPGETPAKKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQDEDVAVANNGSDNEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPKKSITEQDSASLSKSDQPATKIQKTGKEKQDTKGKAASKTAKAAVKDQGKGKSSKKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVINNMSDEEDEGEEEADSDGDGDVDAGKDGDASDEDEE*