AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017864.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017864.01.T01 MTR_3g113680 97.706 654 14 1 88 741 1 653 0.0 1300
MsG0380017864.01.T01 MTR_7g109430 97.248 654 17 1 88 741 1 653 0.0 1298
MsG0380017864.01.T01 MTR_3g114060 82.437 279 41 2 465 741 62 334 1.28e-147 434
MsG0380017864.01.T01 MTR_8g093080 29.439 214 95 3 530 740 140 300 8.08e-21 94.4
MsG0380017864.01.T01 MTR_5g092780 73.810 42 11 0 1 42 1 42 3.54e-17 78.6
MsG0380017864.01.T01 MTR_6g029430 76.190 42 10 0 1 42 94 135 5.12e-17 78.6
MsG0380017864.01.T01 MTR_4g109510 30.085 236 115 8 185 384 9 230 1.65e-16 84.0
MsG0380017864.01.T01 MTR_8g100030 73.810 42 11 0 1 42 3 44 6.59e-16 75.5
MsG0380017864.01.T01 MTR_6g076070 69.048 42 13 0 1 42 1 42 1.52e-14 70.9
MsG0380017864.01.T01 MTR_5g089650 66.667 42 14 0 1 42 5 46 3.46e-14 69.3
MsG0380017864.01.T01 MTR_6g038430 66.667 42 14 0 1 42 64 105 4.02e-14 69.7
MsG0380017864.01.T01 MTR_7g045640 64.286 42 15 0 1 42 6 47 4.56e-14 67.4
MsG0380017864.01.T01 MTR_3g031970 55.556 54 17 1 1 54 5 51 2.58e-13 67.4
MsG0380017864.01.T01 MTR_3g116190 66.667 42 14 0 1 42 1 42 5.42e-13 65.1
MsG0380017864.01.T01 MTR_8g066785 64.286 42 15 0 1 42 29 70 1.95e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017864.01.T01 AT3G11450 63.788 660 211 11 91 741 7 647 0.0 729
MsG0380017864.01.T01 AT5G06110 59.281 668 242 9 89 738 5 660 0.0 706
MsG0380017864.01.T01 AT5G06110 59.281 668 242 9 89 738 5 660 0.0 706
MsG0380017864.01.T01 AT5G45420 31.959 194 87 3 546 739 158 306 1.08e-18 88.2
MsG0380017864.01.T01 AT5G45420 31.959 194 87 3 546 739 158 306 1.08e-18 88.2
MsG0380017864.01.T01 AT5G45420 31.959 194 87 3 546 739 158 306 1.08e-18 88.2
MsG0380017864.01.T01 AT1G74250 29.167 240 117 6 185 384 12 238 3.30e-15 80.1

Find 173 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTCTTTGCCATATATT+TGG 0.137476 3:+101640192 None:intergenic
GCAAGATCATTATGCATTAT+TGG 0.181634 3:-101640845 MsG0380017864.01.T01:CDS
TTTACGACTTAAACAGAATA+TGG 0.185714 3:-101639113 MsG0380017864.01.T01:three_prime_UTR
ACGGGTTTGGGTATGGGTTC+GGG 0.191186 3:-101642805 None:intergenic
TCCTTTCTTCTCAGTATTCT+AGG 0.194363 3:+101640250 None:intergenic
GCAGTTTGATTTATCATTCT+TGG 0.205958 3:-101639173 MsG0380017864.01.T01:exon
CCATGATGAAGGAAAATTTC+AGG 0.207011 3:-101639208 MsG0380017864.01.T01:CDS
TTTCTCCTCTTCAACAATTC+TGG 0.216587 3:+101640153 None:intergenic
TCAAAACAAACCCGTCAAAT+TGG 0.224242 3:-101642702 MsG0380017864.01.T01:CDS
CTTTGGCTGTATCGGGCTTT+TGG 0.228980 3:+101639603 None:intergenic
CCATCTCCTTGAAGTTCCTT+TGG 0.238251 3:+101639700 None:intergenic
CATCTCTGGTTAGCTTCCTT+TGG 0.256785 3:+101639290 None:intergenic
GACGGGTTTGGGTATGGGTT+CGG 0.267597 3:-101642806 None:intergenic
ACTGGGTTTGGGTATGGGTA+TGG 0.272392 3:+101642724 None:intergenic
CAAGATCATTATGCATTATT+GGG 0.286954 3:-101640844 MsG0380017864.01.T01:CDS
GTCTAATTGTCTTCCGGTTA+AGG 0.294533 3:-101641055 MsG0380017864.01.T01:CDS
CTGGGTTTGGGTATGGGTAT+GGG 0.307023 3:+101642725 None:intergenic
AGCTGAGAAGAAAAGGAAAA+AGG 0.327832 3:-101640218 MsG0380017864.01.T01:CDS
ATTGTCAACTAGAGAAGAAT+TGG 0.337451 3:-101639525 MsG0380017864.01.T01:CDS
TCATATTTCAACGCCTTAAC+CGG 0.338185 3:+101641042 None:intergenic
GAGAAAAGTAATCAACAAAA+TGG 0.344685 3:-101639836 MsG0380017864.01.T01:CDS
CATCTCCTTGAAGTTCCTTT+GGG 0.350239 3:+101639701 None:intergenic
CTGAATCCCGAGATCATAAA+AGG 0.353541 3:-101640369 MsG0380017864.01.T01:CDS
ATCTCTGGTTAGCTTCCTTT+GGG 0.356444 3:+101639291 None:intergenic
CGAGTAGCTGCAGCTGTACC+TGG 0.359607 3:-101639263 MsG0380017864.01.T01:CDS
TACTCACAAGAGCTTGTAGA+TGG 0.365954 3:-101641096 MsG0380017864.01.T01:CDS
CGGACGGGTAACCGCAGGTA+TGG 0.384620 3:-101642671 MsG0380017864.01.T01:CDS
CAAACCCGTCAAATTGGGTT+TGG 0.385161 3:-101642696 MsG0380017864.01.T01:CDS
AATGGCTCTGTCAAGGCTAA+TGG 0.392142 3:-101639818 MsG0380017864.01.T01:CDS
TGTTTCGTCTAATTGTCTTC+CGG 0.396355 3:-101641061 MsG0380017864.01.T01:CDS
CAAAACAAACCCGTCAAATT+GGG 0.401421 3:-101642701 MsG0380017864.01.T01:CDS
CGGGTTTGGGTATGGGTTCG+GGG 0.402270 3:-101642804 None:intergenic
CTTCTGTTGCAAAGCAGCTT+CGG 0.407096 3:+101640099 None:intergenic
GTTTGGGTATGGGTTCGGGG+TGG 0.408226 3:-101642801 None:intergenic
CAGCTACTCGTTCCCATCTC+TGG 0.408539 3:+101639276 None:intergenic
AGGCAAAAGCTGAGAAGAAA+AGG 0.413153 3:-101640225 MsG0380017864.01.T01:CDS
TTGTTGATAATGCTTATAAG+AGG 0.415278 3:-101640276 MsG0380017864.01.T01:CDS
AGCAAGAGCAAGAAGAAATC+TGG 0.416590 3:-101640886 MsG0380017864.01.T01:CDS
ATTCTTCTCTAGTTGACAAT+GGG 0.419152 3:+101639528 None:intergenic
TCATCACCTAGAGATGGAAT+TGG 0.419175 3:+101640493 None:intergenic
CCTTTCTTCTCAGTATTCTA+GGG 0.419637 3:+101640251 None:intergenic
GAAGAATGTGGTTGAAGATA+AGG 0.419917 3:-101640941 MsG0380017864.01.T01:CDS
CTGCTTGTTGCTGTCGGTAC+CGG 0.420172 3:+101639404 None:intergenic
TCAAAAGCTTTGGCTGTATC+GGG 0.425452 3:+101639596 None:intergenic
CAAGACTTCTACAAGGTGTT+TGG 0.427058 3:-101640556 MsG0380017864.01.T01:CDS
CCGTCAAATTGGGTTTGGTT+CGG 0.428704 3:-101642691 MsG0380017864.01.T01:CDS
GCTGCTGCACTTAAACTTCT+CGG 0.428929 3:-101640997 MsG0380017864.01.T01:CDS
AGGTTTGGTGATTCAATTGA+AGG 0.429559 3:-101641199 MsG0380017864.01.T01:CDS
TGATGATAAGTCTTCAATAA+AGG 0.429949 3:-101640476 MsG0380017864.01.T01:CDS
TTACGACTTAAACAGAATAT+GGG 0.430216 3:-101639112 MsG0380017864.01.T01:three_prime_UTR
AACTTCCTTGAGGTTTCATC+CGG 0.430850 3:-101640764 MsG0380017864.01.T01:CDS
TTTGGTATTCCTTTAAAAGC+TGG 0.431430 3:-101640432 MsG0380017864.01.T01:CDS
GAGGTTTCATCCGGACAAAC+AGG 0.431529 3:-101640755 MsG0380017864.01.T01:CDS
GAGATTGAGCTATTGAGAAA+AGG 0.438019 3:-101639737 MsG0380017864.01.T01:CDS
TTTGGGTATGGGTTCGGGGT+GGG 0.438313 3:-101642800 None:intergenic
ATCAAAAGCTTTGGCTGTAT+CGG 0.439665 3:+101639595 None:intergenic
CAAATATATGGCAAAGAAGT+TGG 0.442593 3:-101640191 MsG0380017864.01.T01:CDS
AAGAAATGTATCAAAAGCTT+TGG 0.451091 3:+101639586 None:intergenic
ATTTGATATCGAACAATTGA+GGG 0.453929 3:-101639948 MsG0380017864.01.T01:CDS
CATTTGATATCGAACAATTG+AGG 0.454216 3:-101639949 MsG0380017864.01.T01:CDS
CCAAAGGAACTTCAAGGAGA+TGG 0.456430 3:-101639700 MsG0380017864.01.T01:CDS
CTTCGCAGCTTCAGTTTGCT+CGG 0.456856 3:+101640717 None:intergenic
TGGGCACATGATGATGATAT+TGG 0.461569 3:-101642622 MsG0380017864.01.T01:intron
CGAACCAAACCCAATTTGAC+GGG 0.462172 3:+101642692 None:intergenic
CCAACACTGCATAAGCCTCT+TGG 0.462398 3:+101640653 None:intergenic
GATGCAATTGATTGTGCTGC+AGG 0.463598 3:+101639551 None:intergenic
ACAGCAGCAGCCTGTTTGTC+CGG 0.463811 3:+101640745 None:intergenic
CCGATTTCAAAACACGGGTA+TGG 0.465862 3:+101642754 None:intergenic
CAAGATCAAACTCATCAGCC+TGG 0.467623 3:+101640398 None:intergenic
AGAGGCGTGGTCTGCAGTGC+AGG 0.469414 3:-101639345 MsG0380017864.01.T01:CDS
CTGGTTAGCTTCCTTTGGGA+AGG 0.471179 3:+101639295 None:intergenic
GTCGTCGTCATCGTCGGTGT+TGG 0.475726 3:+101639440 None:intergenic
TTGCCATACCTACATACGCC+TGG 0.476384 3:-101642642 MsG0380017864.01.T01:CDS
GGACGGGTAACCGCAGGTAT+GGG 0.480680 3:-101642670 MsG0380017864.01.T01:CDS
CGATTTCAAAACACGGGTAT+GGG 0.480904 3:+101642755 None:intergenic
TTGTTGGCCAGCCTCCATAA+TGG 0.482363 3:-101641148 MsG0380017864.01.T01:CDS
CAAAGGAAGCTAACCAGAGA+TGG 0.482494 3:-101639289 MsG0380017864.01.T01:CDS
TGAACAGCCATTATGGAGGC+TGG 0.491890 3:+101641141 None:intergenic
CCGAACCAAACCCAATTTGA+CGG 0.493095 3:+101642691 None:intergenic
ATTGTTGTCGTCGTCATCGT+CGG 0.494599 3:+101639434 None:intergenic
TTGATACATTTCTTGAGAAG+AGG 0.495249 3:-101639577 MsG0380017864.01.T01:CDS
AGCTGCTTTGCAACAGAAGA+AGG 0.496514 3:-101640095 MsG0380017864.01.T01:CDS
CACTGGATCACGGTCTTCCC+AGG 0.497559 3:+101639245 None:intergenic
TCAATCTCTTCTTTAGTCCA+AGG 0.508908 3:+101639752 None:intergenic
AGCAGGCTACACAGAGAAGA+AGG 0.509420 3:-101639780 MsG0380017864.01.T01:CDS
CAGAGAAGAAGGAGAAACCT+TGG 0.509658 3:-101639769 MsG0380017864.01.T01:CDS
AAGATCAAACTCATCAGCCT+GGG 0.518267 3:+101640399 None:intergenic
AATTCTTCTCTAGTTGACAA+TGG 0.519138 3:+101639527 None:intergenic
CCCTAGAATACTGAGAAGAA+AGG 0.521673 3:-101640251 MsG0380017864.01.T01:CDS
TCAAAACACGGGTATGGGAC+GGG 0.524403 3:+101642760 None:intergenic
CAAATTGGGTTTGGTTCGGA+CGG 0.529498 3:-101642687 MsG0380017864.01.T01:CDS
CCGTAGCAAGATATCTAAGA+TGG 0.529700 3:+101640815 None:intergenic
CAAAGGAACTTCAAGGAGAT+GGG 0.529793 3:-101639699 MsG0380017864.01.T01:CDS
GTTGCTGTCGGTACCGGTGT+TGG 0.530623 3:+101639410 None:intergenic
CGCCCATTCCTCATAAAAGC+AGG 0.531436 3:+101640532 None:intergenic
GTTTCAGAATACATTGGCAC+TGG 0.531471 3:-101639671 MsG0380017864.01.T01:CDS
AATCAACCAATTCCATCTCT+AGG 0.533477 3:-101640499 MsG0380017864.01.T01:CDS
GCATGAAAAGAGTGACCAGC+CGG 0.535447 3:+101641018 None:intergenic
TGGTTCGGACGGGTAACCGC+AGG 0.539601 3:-101642676 MsG0380017864.01.T01:CDS
GGAAGCAGTAGTTCTCTAGC+AGG 0.540499 3:-101639797 MsG0380017864.01.T01:CDS
ATGCCTAGCTATGATTGAGC+AGG 0.543798 3:+101639087 None:intergenic
GGGACGGGTAACGAGTATAT+AGG 0.544695 3:+101642775 None:intergenic
ATCATAAAAGGTGGATGGAA+AGG 0.545814 3:-101640357 MsG0380017864.01.T01:CDS
TATGGCAAAGAAGTTGGAGG+AGG 0.545831 3:-101640185 MsG0380017864.01.T01:CDS
TGCCCAGGCGTATGTAGGTA+TGG 0.545877 3:+101642639 None:intergenic
AGTTTCCCAAAGGAACTTCA+AGG 0.546208 3:-101639706 MsG0380017864.01.T01:CDS
CGAGCAAACTGAAGCTGCGA+AGG 0.546255 3:-101640716 MsG0380017864.01.T01:CDS
AGCGGCCAGAATTGTTGAAG+AGG 0.547278 3:-101640158 MsG0380017864.01.T01:CDS
CCGAGATCATAAAAGGTGGA+TGG 0.548047 3:-101640362 MsG0380017864.01.T01:CDS
AAGTCGTAAAATCTAAAAGC+AGG 0.552023 3:+101639126 None:intergenic
TCATTCTTGGCCAATATCTG+TGG 0.552264 3:-101639160 MsG0380017864.01.T01:three_prime_UTR
TTGATGCTGCTTGTTGCTGT+CGG 0.552607 3:+101639398 None:intergenic
CCAAGAGGCTTATGCAGTGT+TGG 0.555210 3:-101640653 MsG0380017864.01.T01:CDS
AAATTGGGTTTGGTTCGGAC+GGG 0.557484 3:-101642686 MsG0380017864.01.T01:CDS
TCATGTGCCCAGGCGTATGT+AGG 0.558228 3:+101642634 None:intergenic
GCAAACTGAAGCTGCGAAGG+AGG 0.560752 3:-101640713 MsG0380017864.01.T01:CDS
TATGAGGAATGGGCGGTGGT+CGG 0.561239 3:-101640524 MsG0380017864.01.T01:CDS
AATACTGAGAAGAAAGGAAG+AGG 0.562192 3:-101640245 MsG0380017864.01.T01:CDS
TTCAAAACACGGGTATGGGA+CGG 0.563692 3:+101642759 None:intergenic
CAACTAGAGAAGAATTGGAA+GGG 0.570472 3:-101639520 MsG0380017864.01.T01:CDS
GACTTATCATCACCTAGAGA+TGG 0.570557 3:+101640487 None:intergenic
AACACCTTGTAGAAGTCTTG+TGG 0.578361 3:+101640559 None:intergenic
TGTTGATAATGCTTATAAGA+GGG 0.580470 3:-101640275 MsG0380017864.01.T01:CDS
TCAACAAAATGGCTCTGTCA+AGG 0.581777 3:-101639825 MsG0380017864.01.T01:CDS
GAGGTTGTTTCAGAATACAT+TGG 0.584103 3:-101639677 MsG0380017864.01.T01:CDS
GGAGAAACAACGAAAAGCAG+AGG 0.585652 3:-101640137 MsG0380017864.01.T01:CDS
GAAGTTGGAGGAGGAAGAAG+CGG 0.588565 3:-101640176 MsG0380017864.01.T01:CDS
GCTCCTGCTCAATCATAGCT+AGG 0.589382 3:-101639090 MsG0380017864.01.T01:three_prime_UTR
ATATATGGCAAAGAAGTTGG+AGG 0.590878 3:-101640188 MsG0380017864.01.T01:CDS
CCGGTGCTATGATAGACTGT+TGG 0.591035 3:+101639047 None:intergenic
AATATCATCATCATGTGCCC+AGG 0.592456 3:+101642624 None:intergenic
AAAGGAAGCTAACCAGAGAT+GGG 0.594916 3:-101639288 MsG0380017864.01.T01:CDS
AGCAACAAGCAGCATCAACT+CGG 0.597280 3:-101639393 MsG0380017864.01.T01:CDS
CCATCTTAGATATCTTGCTA+CGG 0.601973 3:-101640815 MsG0380017864.01.T01:CDS
AGCAAGAAGAAATCTGGTGA+CGG 0.602442 3:-101640880 MsG0380017864.01.T01:CDS
GAGTAGCTGCAGCTGTACCT+GGG 0.604010 3:-101639262 MsG0380017864.01.T01:CDS
TGCCATACCTACATACGCCT+GGG 0.605253 3:-101642641 MsG0380017864.01.T01:CDS
TTTCCCCGATTTCAAAACAC+GGG 0.605598 3:+101642749 None:intergenic
AGTATGTGTTGTGACAAGAT+AGG 0.605889 3:+101640010 None:intergenic
TCAACTAGAGAAGAATTGGA+AGG 0.608211 3:-101639521 MsG0380017864.01.T01:CDS
AACTAGAGAAGAATTGGAAG+GGG 0.608734 3:-101639519 MsG0380017864.01.T01:CDS
ACAGAAGAAGGTGAAAGAGA+AGG 0.608855 3:-101640083 MsG0380017864.01.T01:CDS
TCAAGGAGTTTCAGAACAAG+AGG 0.609387 3:-101639363 MsG0380017864.01.T01:CDS
GCTATCATAAAACTTCCTTG+AGG 0.611239 3:-101640774 MsG0380017864.01.T01:CDS
ACTCACAAGAGCTTGTAGAT+GGG 0.613229 3:-101641095 MsG0380017864.01.T01:CDS
CATGAAAAGAGTGACCAGCC+GGG 0.617908 3:+101641019 None:intergenic
CCAACAGTCTATCATAGCAC+CGG 0.620101 3:-101639047 MsG0380017864.01.T01:three_prime_UTR
CTTGTGAGTAAGTAATAAGA+CGG 0.621140 3:+101641109 None:intergenic
GTCTTGTGGATCACAGTCAG+TGG 0.627262 3:+101640573 None:intergenic
GGAATACAAAAGTTTCCCAA+AGG 0.628434 3:-101639716 MsG0380017864.01.T01:CDS
TCTTGTGGATCACAGTCAGT+GGG 0.629359 3:+101640574 None:intergenic
TAAGGCGTTGAAATATGACC+CGG 0.631520 3:-101641037 MsG0380017864.01.T01:CDS
ATCAACTCGGAAGACTCTCA+AGG 0.633952 3:-101639380 MsG0380017864.01.T01:CDS
AAGCTGGAGAGAGTTTCCCC+AGG 0.640812 3:-101640416 MsG0380017864.01.T01:CDS
TTTGTCCGGATGAAACCTCA+AGG 0.646808 3:+101640759 None:intergenic
TTTGATATCGAACAATTGAG+GGG 0.649974 3:-101639947 MsG0380017864.01.T01:CDS
TGTTTGAACAGCCATTATGG+AGG 0.649988 3:+101641137 None:intergenic
GACGACAACAATTCCAACAC+CGG 0.650077 3:-101639423 MsG0380017864.01.T01:CDS
TCTTAGATATCTTGCTACGG+AGG 0.651757 3:-101640812 MsG0380017864.01.T01:CDS
TCGTAAAATCTAAAAGCAGG+AGG 0.651762 3:+101639129 None:intergenic
TGATCCACAAGACTTCTACA+AGG 0.666734 3:-101640563 MsG0380017864.01.T01:CDS
AGATCAAACTCATCAGCCTG+GGG 0.670566 3:+101640400 None:intergenic
GGTTTGTGTGAGAAAATCGA+AGG 0.671097 3:-101639926 MsG0380017864.01.T01:CDS
GCGTTGAAATATGACCCGGC+TGG 0.672506 3:-101641033 MsG0380017864.01.T01:CDS
TGAGAAAATCGAAGGCAAAG+AGG 0.673494 3:-101639918 MsG0380017864.01.T01:CDS
AATCCCGAGATCATAAAAGG+TGG 0.674327 3:-101640366 MsG0380017864.01.T01:CDS
TTCTTCTCTAGTTGACAATG+GGG 0.676675 3:+101639529 None:intergenic
GAGTTTCAGAACAAGAGGCG+TGG 0.676797 3:-101639358 MsG0380017864.01.T01:CDS
TTGCTGCTGTAAGAATCAGA+AGG 0.678587 3:+101640904 None:intergenic
AAGCATTATCAACAAGAGTG+CGG 0.686922 3:+101640284 None:intergenic
AGGAACTTCAAGGAGATGGG+AGG 0.689319 3:-101639696 MsG0380017864.01.T01:CDS
GGCAACAAAACCCATACCTG+CGG 0.689508 3:+101642660 None:intergenic
AGATGCTGATAAGAAGAATG+TGG 0.708564 3:-101640953 MsG0380017864.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAACAATAATAAATTGA+AGG - Chr3:101639595-101639614 MsG0380017864.01.T01:CDS 15.0%
!!! ATCATAAATTCTTCTTTTTA+CGG + Chr3:101641124-101641143 None:intergenic 15.0%
!!! TAAGTATTTGAAATTTTCTT+TGG - Chr3:101640519-101640538 MsG0380017864.01.T01:CDS 15.0%
!! ATGAATATATAATTCGAACA+GGG - Chr3:101639758-101639777 MsG0380017864.01.T01:CDS 20.0%
!! CTATAATATGCAGTATTATT+AGG - Chr3:101640341-101640360 MsG0380017864.01.T01:CDS 20.0%
!! TATGAATATATAATTCGAAC+AGG - Chr3:101639757-101639776 MsG0380017864.01.T01:CDS 20.0%
!! TGCATAATAAAAACATGTTT+GGG - Chr3:101639838-101639857 MsG0380017864.01.T01:CDS 20.0%
!!! ATCAGTTTTTTGTATTTTGT+TGG - Chr3:101640581-101640600 MsG0380017864.01.T01:CDS 20.0%
!!! GAAGCAAGTATTTAATTTTA+GGG + Chr3:101639967-101639986 None:intergenic 20.0%
!!! TCATAAATTCTTCTTTTTAC+GGG + Chr3:101641123-101641142 None:intergenic 20.0%
!!! TGAAATAGATGTTCATTTTA+AGG - Chr3:101641065-101641084 MsG0380017864.01.T01:CDS 20.0%
!!! TGAAGCAAGTATTTAATTTT+AGG + Chr3:101639968-101639987 None:intergenic 20.0%
!!! TTGATAGTTTCTACAATTTT+TGG - Chr3:101641295-101641314 MsG0380017864.01.T01:intron 20.0%
!!! TTTATTGTATTTTGATTTGC+TGG - Chr3:101640487-101640506 MsG0380017864.01.T01:CDS 20.0%
!!! TTTTGATGTTTTGTGTTTTA+TGG - Chr3:101640222-101640241 MsG0380017864.01.T01:CDS 20.0%
! AACACAAAACATAGATGTTA+TGG + Chr3:101640168-101640187 None:intergenic 25.0%
! AAGAAATGTATCAAAAGCTT+TGG + Chr3:101642162-101642181 None:intergenic 25.0%
! ACCATTAAATTCCACAATAA+TGG + Chr3:101640468-101640487 None:intergenic 25.0%
! ACCATTATTGTGGAATTTAA+TGG - Chr3:101640464-101640483 MsG0380017864.01.T01:CDS 25.0%
! ATTTGATATCGAACAATTGA+GGG - Chr3:101641797-101641816 MsG0380017864.01.T01:intron 25.0%
! CAAGATCATTATGCATTATT+GGG - Chr3:101640901-101640920 MsG0380017864.01.T01:CDS 25.0%
! CAATTAGACGAAACAAAAAT+AGG + Chr3:101640679-101640698 None:intergenic 25.0%
! CTGCATAATAAAAACATGTT+TGG - Chr3:101639837-101639856 MsG0380017864.01.T01:CDS 25.0%
! GAGAAAAGTAATCAACAAAA+TGG - Chr3:101641909-101641928 MsG0380017864.01.T01:intron 25.0%
! GGATAGAAATCTAATGTATT+TGG - Chr3:101639175-101639194 MsG0380017864.01.T01:exon 25.0%
! TGATGATAAGTCTTCAATAA+AGG - Chr3:101641269-101641288 MsG0380017864.01.T01:intron 25.0%
! TTACGACTTAAACAGAATAT+GGG - Chr3:101642633-101642652 MsG0380017864.01.T01:CDS 25.0%
! TTCTCTTTCAAACCAAAAAT+GGG + Chr3:101642732-101642751 None:intergenic 25.0%
! TTTACGACTTAAACAGAATA+TGG - Chr3:101642632-101642651 MsG0380017864.01.T01:CDS 25.0%
!! TTGAAATTTTCTTTGGATAC+AGG - Chr3:101640526-101640545 MsG0380017864.01.T01:CDS 25.0%
!!! CAAACATGTTTTTATTATGC+AGG + Chr3:101639839-101639858 None:intergenic 25.0%
!!! GTTTTTAGTTTCAGGTTATT+AGG - Chr3:101640440-101640459 MsG0380017864.01.T01:CDS 25.0%
!!! TGTTGATAATGCTTATAAGA+GGG - Chr3:101641470-101641489 MsG0380017864.01.T01:intron 25.0%
!!! TGTTTTAGTAAAAGCAAAGA+TGG - Chr3:101640126-101640145 MsG0380017864.01.T01:CDS 25.0%
!!! TTGTTGATAATGCTTATAAG+AGG - Chr3:101641469-101641488 MsG0380017864.01.T01:intron 25.0%
AACTAAATTGATCCTGATTC+AGG + Chr3:101639522-101639541 None:intergenic 30.0%
AACTTCAAGAAACACAATGT+TGG - Chr3:101639679-101639698 MsG0380017864.01.T01:CDS 30.0%
AAGTCGTAAAATCTAAAAGC+AGG + Chr3:101642622-101642641 None:intergenic 30.0%
AATTCTTCTCTAGTTGACAA+TGG + Chr3:101642221-101642240 None:intergenic 30.0%
ATGAAGTGAAATAAGAAGCT+CGG + Chr3:101640385-101640404 None:intergenic 30.0%
ATTCTTCTCTAGTTGACAAT+GGG + Chr3:101642220-101642239 None:intergenic 30.0%
ATTGTCAACTAGAGAAGAAT+TGG - Chr3:101642220-101642239 MsG0380017864.01.T01:intron 30.0%
CAAATATATGGCAAAGAAGT+TGG - Chr3:101641554-101641573 MsG0380017864.01.T01:intron 30.0%
CAACTTCTTTGCCATATATT+TGG + Chr3:101641556-101641575 None:intergenic 30.0%
CATTTGATATCGAACAATTG+AGG - Chr3:101641796-101641815 MsG0380017864.01.T01:intron 30.0%
CCAACACATTGTTAAGAAAA+AGG + Chr3:101639255-101639274 None:intergenic 30.0%
CTTGTGAGTAAGTAATAAGA+CGG + Chr3:101640639-101640658 None:intergenic 30.0%
GAAAAAATTTGCCATGATGA+AGG - Chr3:101642526-101642545 MsG0380017864.01.T01:intron 30.0%
GAAAAAGGAGTCCAAATATA+TGG - Chr3:101641542-101641561 MsG0380017864.01.T01:intron 30.0%
GAATCAGGATCAATTTAGTT+TGG - Chr3:101639522-101639541 MsG0380017864.01.T01:CDS 30.0%
GCAAGATCATTATGCATTAT+TGG - Chr3:101640900-101640919 MsG0380017864.01.T01:CDS 30.0%
GGAAAAAATTCCACAGATAT+TGG + Chr3:101642598-101642617 None:intergenic 30.0%
GTTATTAGGAACCATTATTG+TGG - Chr3:101640454-101640473 MsG0380017864.01.T01:CDS 30.0%
GTTCTCTTTCAAACCAAAAA+TGG + Chr3:101642733-101642752 None:intergenic 30.0%
TAGATTATAGAACCTGAATC+AGG - Chr3:101639507-101639526 MsG0380017864.01.T01:CDS 30.0%
TTGATACATTTCTTGAGAAG+AGG - Chr3:101642168-101642187 MsG0380017864.01.T01:intron 30.0%
TTTGATATATGGATCGTGTT+AGG + Chr3:101639424-101639443 None:intergenic 30.0%
TTTGATATCGAACAATTGAG+GGG - Chr3:101641798-101641817 MsG0380017864.01.T01:intron 30.0%
! ATTTTCTTTGGATACAGGTT+TGG - Chr3:101640531-101640550 MsG0380017864.01.T01:CDS 30.0%
! CCTTTTTCTTAACAATGTGT+TGG - Chr3:101639252-101639271 MsG0380017864.01.T01:CDS 30.0%
! GCAGTTTGATTTATCATTCT+TGG - Chr3:101642572-101642591 MsG0380017864.01.T01:intron 30.0%
! TTTGGTATTCCTTTAAAAGC+TGG - Chr3:101641313-101641332 MsG0380017864.01.T01:intron 30.0%
!! ATTTTGTTATCTCAGCTATC+TGG - Chr3:101642766-101642785 MsG0380017864.01.T01:CDS 30.0%
!! GTAAGAAAGTGTTGAATTTG+CGG + Chr3:101640041-101640060 None:intergenic 30.0%
!! TTTTGTTTGAACAGCCATTA+TGG + Chr3:101640614-101640633 None:intergenic 30.0%
!!! ACTTCTCTGTTTTTAGTTTC+AGG - Chr3:101640432-101640451 MsG0380017864.01.T01:CDS 30.0%
AAAACATGTTTGGGCCAAAA+TGG - Chr3:101639847-101639866 MsG0380017864.01.T01:CDS 35.0%
AACTAGAGAAGAATTGGAAG+GGG - Chr3:101642226-101642245 MsG0380017864.01.T01:intron 35.0%
AAGCATTATCAACAAGAGTG+CGG + Chr3:101641464-101641483 None:intergenic 35.0%
AATACTGAGAAGAAAGGAAG+AGG - Chr3:101641500-101641519 MsG0380017864.01.T01:intron 35.0%
AATCAACCAATTCCATCTCT+AGG - Chr3:101641246-101641265 MsG0380017864.01.T01:intron 35.0%
AATTCGACTTACCTTGAGTT+TGG - Chr3:101639618-101639637 MsG0380017864.01.T01:CDS 35.0%
AGATGCTGATAAGAAGAATG+TGG - Chr3:101640792-101640811 MsG0380017864.01.T01:CDS 35.0%
AGCTGAGAAGAAAAGGAAAA+AGG - Chr3:101641527-101641546 MsG0380017864.01.T01:intron 35.0%
AGGCTTGAAATACGATGATT+TGG - Chr3:101639649-101639668 MsG0380017864.01.T01:CDS 35.0%
AGTATGTGTTGTGACAAGAT+AGG + Chr3:101641738-101641757 None:intergenic 35.0%
ATATATGGCAAAGAAGTTGG+AGG - Chr3:101641557-101641576 MsG0380017864.01.T01:intron 35.0%
ATCATAAAAGGTGGATGGAA+AGG - Chr3:101641388-101641407 MsG0380017864.01.T01:intron 35.0%
CAAAACAAACCCGTCAAATT+GGG - Chr3:101639044-101639063 MsG0380017864.01.T01:three_prime_UTR 35.0%
CAAAACTGTCAGAAAAAGCT+AGG - Chr3:101641418-101641437 MsG0380017864.01.T01:intron 35.0%
CAACTAGAGAAGAATTGGAA+GGG - Chr3:101642225-101642244 MsG0380017864.01.T01:intron 35.0%
CCAAAAATGGGACATATATC+CGG + Chr3:101642720-101642739 None:intergenic 35.0%
CCATCTTAGATATCTTGCTA+CGG - Chr3:101640930-101640949 MsG0380017864.01.T01:CDS 35.0%
CCATGATGAAGGAAAATTTC+AGG - Chr3:101642537-101642556 MsG0380017864.01.T01:intron 35.0%
CCTTTCTTCTCAGTATTCTA+GGG + Chr3:101641497-101641516 None:intergenic 35.0%
GAAGAATGTGGTTGAAGATA+AGG - Chr3:101640804-101640823 MsG0380017864.01.T01:CDS 35.0%
GAGATTGAGCTATTGAGAAA+AGG - Chr3:101642008-101642027 MsG0380017864.01.T01:intron 35.0%
GATATTTCGCTGAGAGAATT+GGG + Chr3:101639873-101639892 None:intergenic 35.0%
GCTATCATAAAACTTCCTTG+AGG - Chr3:101640971-101640990 MsG0380017864.01.T01:CDS 35.0%
GGAATACAAAAGTTTCCCAA+AGG - Chr3:101642029-101642048 MsG0380017864.01.T01:intron 35.0%
TCAAAACAAACCCGTCAAAT+TGG - Chr3:101639043-101639062 MsG0380017864.01.T01:three_prime_UTR 35.0%
TCAACTAGAGAAGAATTGGA+AGG - Chr3:101642224-101642243 MsG0380017864.01.T01:intron 35.0%
TCAATCTCTTCTTTAGTCCA+AGG + Chr3:101641996-101642015 None:intergenic 35.0%
TCATATTTCAACGCCTTAAC+CGG + Chr3:101640706-101640725 None:intergenic 35.0%
TCCTTTCTTCTCAGTATTCT+AGG + Chr3:101641498-101641517 None:intergenic 35.0%
TCGTAAAATCTAAAAGCAGG+AGG + Chr3:101642619-101642638 None:intergenic 35.0%
TGTTGCAACACGTTTCTTAA+AGG + Chr3:101639900-101639919 None:intergenic 35.0%
TGTTTCGTCTAATTGTCTTC+CGG - Chr3:101640684-101640703 MsG0380017864.01.T01:CDS 35.0%
TTCTTCTCTAGTTGACAATG+GGG + Chr3:101642219-101642238 None:intergenic 35.0%
TTGGAGTTTCATATTTCGAG+TGG - Chr3:101639698-101639717 MsG0380017864.01.T01:CDS 35.0%
TTTCTCCTCTTCAACAATTC+TGG + Chr3:101641595-101641614 None:intergenic 35.0%
! AAACTCTCTCCAGCTTTTAA+AGG + Chr3:101641325-101641344 None:intergenic 35.0%
! ATCAAAAGCTTTGGCTGTAT+CGG + Chr3:101642153-101642172 None:intergenic 35.0%
! CCTGAAATTTTCCTTCATCA+TGG + Chr3:101642540-101642559 None:intergenic 35.0%
! CCTTTTAAACACCAAACTCA+AGG + Chr3:101639632-101639651 None:intergenic 35.0%
! CTTAACAATGTGTTGGTGTT+GGG - Chr3:101639259-101639278 MsG0380017864.01.T01:CDS 35.0%
! GAGGTTGTTTCAGAATACAT+TGG - Chr3:101642068-101642087 MsG0380017864.01.T01:intron 35.0%
! TCTTAACAATGTGTTGGTGT+TGG - Chr3:101639258-101639277 MsG0380017864.01.T01:CDS 35.0%
! TTTTCCCCGATTTCAAAACA+CGG + Chr3:101639000-101639019 None:intergenic 35.0%
!! ACAGGGTATTTTGAGAGTAT+TGG - Chr3:101639775-101639794 MsG0380017864.01.T01:CDS 35.0%
!! AGCTTTAAAAACCTTCCCAA+AGG - Chr3:101642439-101642458 MsG0380017864.01.T01:intron 35.0%
!! AGGTTTGGTGATTCAATTGA+AGG - Chr3:101640546-101640565 MsG0380017864.01.T01:CDS 35.0%
!! CCTTGAGTTTGGTGTTTAAA+AGG - Chr3:101639629-101639648 MsG0380017864.01.T01:CDS 35.0%
!! CTATTTTCAGTTGTTGTTGC+TGG + Chr3:101642260-101642279 None:intergenic 35.0%
!! GCACTTGTTTCTATCATTTG+AGG - Chr3:101640274-101640293 MsG0380017864.01.T01:CDS 35.0%
!! TTAACAATGTGTTGGTGTTG+GGG - Chr3:101639260-101639279 MsG0380017864.01.T01:CDS 35.0%
!!! TCATTTTAAGGCAATCCAAG+AGG - Chr3:101641077-101641096 MsG0380017864.01.T01:CDS 35.0%
!!! TGGCAAATTTTTTCTTGCAC+TGG + Chr3:101642520-101642539 None:intergenic 35.0%
!!! TTTTTTCTTGCACTGGATCA+CGG + Chr3:101642513-101642532 None:intergenic 35.0%
AAAGGAAGCTAACCAGAGAT+GGG - Chr3:101642457-101642476 MsG0380017864.01.T01:intron 40.0%
AACACCTTGTAGAAGTCTTG+TGG + Chr3:101641189-101641208 None:intergenic 40.0%
AACTTCCTTGAGGTTTCATC+CGG - Chr3:101640981-101641000 MsG0380017864.01.T01:CDS 40.0%
AAGATCAAACTCATCAGCCT+GGG + Chr3:101641349-101641368 None:intergenic 40.0%
AATACGTCATGTGACTCACT+AGG - Chr3:101639154-101639173 MsG0380017864.01.T01:three_prime_UTR 40.0%
AATATCATCATCATGTGCCC+AGG + Chr3:101639124-101639143 None:intergenic 40.0%
AATCCCGAGATCATAAAAGG+TGG - Chr3:101641379-101641398 MsG0380017864.01.T01:intron 40.0%
ACAGAAGAAGGTGAAAGAGA+AGG - Chr3:101641662-101641681 MsG0380017864.01.T01:intron 40.0%
ACTCACAAGAGCTTGTAGAT+GGG - Chr3:101640650-101640669 MsG0380017864.01.T01:CDS 40.0%
ACTGAGTTGCAAGAAAAACG+TGG - Chr3:101641881-101641900 MsG0380017864.01.T01:intron 40.0%
ACTGTCAGAAAAAGCTAGGA+AGG - Chr3:101641422-101641441 MsG0380017864.01.T01:intron 40.0%
AGAAGGAGAAAAAGCTCTTG+CGG - Chr3:101641679-101641698 MsG0380017864.01.T01:intron 40.0%
AGCAAGAAGAAATCTGGTGA+CGG - Chr3:101640865-101640884 MsG0380017864.01.T01:CDS 40.0%
AGCAAGAGCAAGAAGAAATC+TGG - Chr3:101640859-101640878 MsG0380017864.01.T01:CDS 40.0%
AGGCAAAAGCTGAGAAGAAA+AGG - Chr3:101641520-101641539 MsG0380017864.01.T01:intron 40.0%
AGTGAGAATGAAACTAGGTC+TGG + Chr3:101639998-101640017 None:intergenic 40.0%
AGTTTCCCAAAGGAACTTCA+AGG - Chr3:101642039-101642058 MsG0380017864.01.T01:intron 40.0%
ATCGGAGTGAGAATGAAACT+AGG + Chr3:101640003-101640022 None:intergenic 40.0%
CAAAGGAACTTCAAGGAGAT+GGG - Chr3:101642046-101642065 MsG0380017864.01.T01:intron 40.0%
CAACACGTTTCTTAAAGGCT+TGG + Chr3:101639895-101639914 None:intergenic 40.0%
CATCTCCTTGAAGTTCCTTT+GGG + Chr3:101642047-101642066 None:intergenic 40.0%
CATTCGATAGCAAATCCATG+AGG + Chr3:101639372-101639391 None:intergenic 40.0%
CCCTAGAATACTGAGAAGAA+AGG - Chr3:101641494-101641513 MsG0380017864.01.T01:intron 40.0%
CCGTAGCAAGATATCTAAGA+TGG + Chr3:101640933-101640952 None:intergenic 40.0%
CGATTTCAAAACACGGGTAT+GGG + Chr3:101638993-101639012 None:intergenic 40.0%
CTGAATCCCGAGATCATAAA+AGG - Chr3:101641376-101641395 MsG0380017864.01.T01:intron 40.0%
GACTTATCATCACCTAGAGA+TGG + Chr3:101641261-101641280 None:intergenic 40.0%
GCAAATCCATGAGGTTATAG+CGG + Chr3:101639363-101639382 None:intergenic 40.0%
GGATATTTCGCTGAGAGAAT+TGG + Chr3:101639874-101639893 None:intergenic 40.0%
GGTTTGTGTGAGAAAATCGA+AGG - Chr3:101641819-101641838 MsG0380017864.01.T01:intron 40.0%
GTCTAATTGTCTTCCGGTTA+AGG - Chr3:101640690-101640709 MsG0380017864.01.T01:CDS 40.0%
GTTTCAGAATACATTGGCAC+TGG - Chr3:101642074-101642093 MsG0380017864.01.T01:intron 40.0%
TACTCACAAGAGCTTGTAGA+TGG - Chr3:101640649-101640668 MsG0380017864.01.T01:CDS 40.0%
TCAAGGAGTTTCAGAACAAG+AGG - Chr3:101642382-101642401 MsG0380017864.01.T01:intron 40.0%
TCATCACCTAGAGATGGAAT+TGG + Chr3:101641255-101641274 None:intergenic 40.0%
TCATTCTTGGCCAATATCTG+TGG - Chr3:101642585-101642604 MsG0380017864.01.T01:intron 40.0%
TCTTAGATATCTTGCTACGG+AGG - Chr3:101640933-101640952 MsG0380017864.01.T01:CDS 40.0%
TGAGAAAATCGAAGGCAAAG+AGG - Chr3:101641827-101641846 MsG0380017864.01.T01:intron 40.0%
TGATCCACAAGACTTCTACA+AGG - Chr3:101641182-101641201 MsG0380017864.01.T01:CDS 40.0%
TGTTTGAACAGCCATTATGG+AGG + Chr3:101640611-101640630 None:intergenic 40.0%
TTGCTGCTGTAAGAATCAGA+AGG + Chr3:101640844-101640863 None:intergenic 40.0%
TTTCCCCGATTTCAAAACAC+GGG + Chr3:101638999-101639018 None:intergenic 40.0%
! AGTGGTGAGACATAGGTTTT+AGG - Chr3:101639716-101639735 MsG0380017864.01.T01:CDS 40.0%
! CAAGACTTCTACAAGGTGTT+TGG - Chr3:101641189-101641208 MsG0380017864.01.T01:CDS 40.0%
! CATCCACCTTTTATGATCTC+GGG + Chr3:101641385-101641404 None:intergenic 40.0%
! CCATCCACCTTTTATGATCT+CGG + Chr3:101641386-101641405 None:intergenic 40.0%
! CCGGATATATGTCCCATTTT+TGG - Chr3:101642717-101642736 MsG0380017864.01.T01:CDS 40.0%
! GTGGTGAGACATAGGTTTTA+GGG - Chr3:101639717-101639736 MsG0380017864.01.T01:CDS 40.0%
! TATTTCGAGTGGTGAGACAT+AGG - Chr3:101639709-101639728 MsG0380017864.01.T01:CDS 40.0%
! TCAAAAGCTTTGGCTGTATC+GGG + Chr3:101642152-101642171 None:intergenic 40.0%
! TCAACAAAATGGCTCTGTCA+AGG - Chr3:101641920-101641939 MsG0380017864.01.T01:intron 40.0%
! TGGGCACATGATGATGATAT+TGG - Chr3:101639123-101639142 MsG0380017864.01.T01:three_prime_UTR 40.0%
! TGTTTCAGACCATGATGATG+AGG + Chr3:101639231-101639250 None:intergenic 40.0%
!! ATCTCTGGTTAGCTTCCTTT+GGG + Chr3:101642457-101642476 None:intergenic 40.0%
!! ATGGATTTGCTATCGAATGG+AGG - Chr3:101639373-101639392 MsG0380017864.01.T01:CDS 40.0%
!! CTCATGGATTTGCTATCGAA+TGG - Chr3:101639370-101639389 MsG0380017864.01.T01:CDS 40.0%
!! GTCCTGCTTTTATGAGGAAT+GGG - Chr3:101641211-101641230 MsG0380017864.01.T01:intron 40.0%
!! TAAGGCGTTGAAATATGACC+CGG - Chr3:101640708-101640727 MsG0380017864.01.T01:CDS 40.0%
!! TGGTGAGACATAGGTTTTAG+GGG - Chr3:101639718-101639737 MsG0380017864.01.T01:CDS 40.0%
!! TGTTTGGTCCTGCTTTTATG+AGG - Chr3:101641205-101641224 MsG0380017864.01.T01:intron 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + Chr3:101639029-101639048 None:intergenic 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG - Chr3:101638993-101639012 MsG0380017864.01.T01:three_prime_UTR 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG - Chr3:101638992-101639011 MsG0380017864.01.T01:three_prime_UTR 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG - Chr3:101638991-101639010 MsG0380017864.01.T01:three_prime_UTR 40.0%
!!! GAGACGAATGTCGTTTTTTG+TGG + Chr3:101639209-101639228 None:intergenic 40.0%
!!! GGTTTGTTTTGACTGGGTTT+GGG + Chr3:101639035-101639054 None:intergenic 40.0%
!!! TAGGTTTTAGGGGCAAAATG+TGG - Chr3:101639728-101639747 MsG0380017864.01.T01:CDS 40.0%
!!! TTGACGGGTTTGTTTTGACT+GGG + Chr3:101639041-101639060 None:intergenic 40.0%
!!! TTTGACGGGTTTGTTTTGAC+TGG + Chr3:101639042-101639061 None:intergenic 40.0%
AGATCAAACTCATCAGCCTG+GGG + Chr3:101641348-101641367 None:intergenic 45.0%
AGCAACAAGCAGCATCAACT+CGG - Chr3:101642352-101642371 MsG0380017864.01.T01:intron 45.0%
ATCAACTCGGAAGACTCTCA+AGG - Chr3:101642365-101642384 MsG0380017864.01.T01:intron 45.0%
ATGCCTAGCTATGATTGAGC+AGG + Chr3:101642661-101642680 None:intergenic 45.0%
ATTGTTGTCGTCGTCATCGT+CGG + Chr3:101642314-101642333 None:intergenic 45.0%
CAAACCCGTCAAATTGGGTT+TGG - Chr3:101639049-101639068 MsG0380017864.01.T01:three_prime_UTR 45.0%
CAAAGGAAGCTAACCAGAGA+TGG - Chr3:101642456-101642475 MsG0380017864.01.T01:intron 45.0%
CAAGATCAAACTCATCAGCC+TGG + Chr3:101641350-101641369 None:intergenic 45.0%
CAGAGAAGAAGGAGAAACCT+TGG - Chr3:101641976-101641995 MsG0380017864.01.T01:intron 45.0%
CATTCGTCTCCTCATCATCA+TGG - Chr3:101639219-101639238 MsG0380017864.01.T01:CDS 45.0%
CCAAAGGAACTTCAAGGAGA+TGG - Chr3:101642045-101642064 MsG0380017864.01.T01:intron 45.0%
CCAACAGTCTATCATAGCAC+CGG - Chr3:101642698-101642717 MsG0380017864.01.T01:CDS 45.0%
CCATCTCCTTGAAGTTCCTT+TGG + Chr3:101642048-101642067 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG + Chr3:101639057-101639076 None:intergenic 45.0%
CCGAGATCATAAAAGGTGGA+TGG - Chr3:101641383-101641402 MsG0380017864.01.T01:intron 45.0%
CCGATTTCAAAACACGGGTA+TGG + Chr3:101638994-101639013 None:intergenic 45.0%
CGAACCAAACCCAATTTGAC+GGG + Chr3:101639056-101639075 None:intergenic 45.0%
CTTCTGTTGCAAAGCAGCTT+CGG + Chr3:101641649-101641668 None:intergenic 45.0%
GACGACAACAATTCCAACAC+CGG - Chr3:101642322-101642341 MsG0380017864.01.T01:intron 45.0%
GATGCAATTGATTGTGCTGC+AGG + Chr3:101642197-101642216 None:intergenic 45.0%
GCTGCTGCACTTAAACTTCT+CGG - Chr3:101640748-101640767 MsG0380017864.01.T01:CDS 45.0%
GGAGAAACAACGAAAAGCAG+AGG - Chr3:101641608-101641627 MsG0380017864.01.T01:intron 45.0%
TAGATCGACATACCTCCTTG+AGG + Chr3:101640074-101640093 None:intergenic 45.0%
TATGGCAAAGAAGTTGGAGG+AGG - Chr3:101641560-101641579 MsG0380017864.01.T01:intron 45.0%
TCGAATGGAGGATACAGTCA+CGG - Chr3:101639385-101639404 MsG0380017864.01.T01:CDS 45.0%
TCTTGTGGATCACAGTCAGT+GGG + Chr3:101641174-101641193 None:intergenic 45.0%
TGATAGAGCTGGACAATCTC+AGG + Chr3:101639300-101639319 None:intergenic 45.0%
TGCTATCCGCTATAACCTCA+TGG - Chr3:101639354-101639373 MsG0380017864.01.T01:CDS 45.0%
TTCAAAACACGGGTATGGGA+CGG + Chr3:101638989-101639008 None:intergenic 45.0%
TTTGTCCGGATGAAACCTCA+AGG + Chr3:101640989-101641008 None:intergenic 45.0%
! AATGGCTCTGTCAAGGCTAA+TGG - Chr3:101641927-101641946 MsG0380017864.01.T01:intron 45.0%
! AGCTGCTTTGCAACAGAAGA+AGG - Chr3:101641650-101641669 MsG0380017864.01.T01:intron 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - Chr3:101639054-101639073 MsG0380017864.01.T01:three_prime_UTR 45.0%
! CTGAGAGAATTGGGCCATTT+TGG + Chr3:101639864-101639883 None:intergenic 45.0%
! GGCTACATTGTTGATAGAGC+TGG + Chr3:101639311-101639330 None:intergenic 45.0%
! TTGATGCTGCTTGTTGCTGT+CGG + Chr3:101642350-101642369 None:intergenic 45.0%
!! AAATTGGGTTTGGTTCGGAC+GGG - Chr3:101639059-101639078 MsG0380017864.01.T01:three_prime_UTR 45.0%
!! CAAATTGGGTTTGGTTCGGA+CGG - Chr3:101639058-101639077 MsG0380017864.01.T01:three_prime_UTR 45.0%
!! CATCTCTGGTTAGCTTCCTT+TGG + Chr3:101642458-101642477 None:intergenic 45.0%
!! CTGCTTTTATGAGGAATGGG+CGG - Chr3:101641214-101641233 MsG0380017864.01.T01:intron 45.0%
!! CTTACTTTTCCAGCTCCTCA+AGG - Chr3:101640056-101640075 MsG0380017864.01.T01:CDS 45.0%
!! GGTCCTGCTTTTATGAGGAA+TGG - Chr3:101641210-101641229 MsG0380017864.01.T01:intron 45.0%
!!! GGGTTTGTTTTGACTGGGTT+TGG + Chr3:101639036-101639055 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + Chr3:101639030-101639049 None:intergenic 45.0%
!!! ATTTTTTATATTTTGATATA+TGG + Chr3:101639435-101639454 None:intergenic 5.0%
ACTGGGTTTGGGTATGGGTA+TGG + Chr3:101639024-101639043 None:intergenic 50.0%
AGCAGGCTACACAGAGAAGA+AGG - Chr3:101641965-101641984 MsG0380017864.01.T01:intron 50.0%
AGCGGATAGCATAGCGAGAA+GGG + Chr3:101639345-101639364 None:intergenic 50.0%
AGCGGCCAGAATTGTTGAAG+AGG - Chr3:101641587-101641606 MsG0380017864.01.T01:intron 50.0%
AGGAACTTCAAGGAGATGGG+AGG - Chr3:101642049-101642068 MsG0380017864.01.T01:intron 50.0%
ATAGCATAGCGAGAAGGGGT+AGG + Chr3:101639340-101639359 None:intergenic 50.0%
CATGAAAAGAGTGACCAGCC+GGG + Chr3:101640729-101640748 None:intergenic 50.0%
CCAACACTGCATAAGCCTCT+TGG + Chr3:101641095-101641114 None:intergenic 50.0%
CCAAGAGGCTTATGCAGTGT+TGG - Chr3:101641092-101641111 MsG0380017864.01.T01:CDS 50.0%
CGCCCATTCCTCATAAAAGC+AGG + Chr3:101641216-101641235 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTAT+GGG + Chr3:101639023-101639042 None:intergenic 50.0%
GAAGTTGGAGGAGGAAGAAG+CGG - Chr3:101641569-101641588 MsG0380017864.01.T01:intron 50.0%
GAGGTTTCATCCGGACAAAC+AGG - Chr3:101640990-101641009 MsG0380017864.01.T01:CDS 50.0%
GAGTTTCAGAACAAGAGGCG+TGG - Chr3:101642387-101642406 MsG0380017864.01.T01:intron 50.0%
GCATGAAAAGAGTGACCAGC+CGG + Chr3:101640730-101640749 None:intergenic 50.0%
GCGTGAGAAGAAAGGAGAGT+GGG - Chr3:101639803-101639822 MsG0380017864.01.T01:CDS 50.0%
GCTCCTGCTCAATCATAGCT+AGG - Chr3:101642655-101642674 MsG0380017864.01.T01:CDS 50.0%
GGAAGCAGTAGTTCTCTAGC+AGG - Chr3:101641948-101641967 MsG0380017864.01.T01:intron 50.0%
GGAGAAAAAGCTCTTGCGGA+AGG - Chr3:101641683-101641702 MsG0380017864.01.T01:intron 50.0%
GGCAACAAAACCCATACCTG+CGG + Chr3:101639088-101639107 None:intergenic 50.0%
GGGACGGGTAACGAGTATAT+AGG + Chr3:101638973-101638992 None:intergenic 50.0%
GTCTTGTGGATCACAGTCAG+TGG + Chr3:101641175-101641194 None:intergenic 50.0%
TAGCATAGCGAGAAGGGGTA+GGG + Chr3:101639339-101639358 None:intergenic 50.0%
TCAAAACACGGGTATGGGAC+GGG + Chr3:101638988-101639007 None:intergenic 50.0%
TGAACAGCCATTATGGAGGC+TGG + Chr3:101640607-101640626 None:intergenic 50.0%
TGCCATACCTACATACGCCT+GGG - Chr3:101639104-101639123 MsG0380017864.01.T01:three_prime_UTR 50.0%
TGCGTGAGAAGAAAGGAGAG+TGG - Chr3:101639802-101639821 MsG0380017864.01.T01:CDS 50.0%
TTGAATTTGCGGCCGTGAAG+TGG + Chr3:101640030-101640049 None:intergenic 50.0%
TTGCCATACCTACATACGCC+TGG - Chr3:101639103-101639122 MsG0380017864.01.T01:three_prime_UTR 50.0%
TTGTTGGCCAGCCTCCATAA+TGG - Chr3:101640597-101640616 MsG0380017864.01.T01:CDS 50.0%
! ACTTTTCCAGCTCCTCAAGG+AGG - Chr3:101640059-101640078 MsG0380017864.01.T01:CDS 50.0%
! CTTCGCAGCTTCAGTTTGCT+CGG + Chr3:101641031-101641050 None:intergenic 50.0%
! CTTTGGCTGTATCGGGCTTT+TGG + Chr3:101642145-101642164 None:intergenic 50.0%
! CTTTTATGAGGAATGGGCGG+TGG - Chr3:101641217-101641236 MsG0380017864.01.T01:intron 50.0%
! TAGCGGATAGCATAGCGAGA+AGG + Chr3:101639346-101639365 None:intergenic 50.0%
!! ATCGGGCTTTTGGAGGAGAA+CGG + Chr3:101642135-101642154 None:intergenic 50.0%
!! CCGGTGCTATGATAGACTGT+TGG + Chr3:101642701-101642720 None:intergenic 50.0%
!! CTGGTTAGCTTCCTTTGGGA+AGG + Chr3:101642453-101642472 None:intergenic 50.0%
AAGCTGGAGAGAGTTTCCCC+AGG - Chr3:101641329-101641348 MsG0380017864.01.T01:intron 55.0%
AATTTGCGGCCGTGAAGTGG+CGG + Chr3:101640027-101640046 None:intergenic 55.0%
ACAGCAGCAGCCTGTTTGTC+CGG + Chr3:101641003-101641022 None:intergenic 55.0%
ATAGCGAGAAGGGGTAGGGA+TGG + Chr3:101639335-101639354 None:intergenic 55.0%
CAGCTACTCGTTCCCATCTC+TGG + Chr3:101642472-101642491 None:intergenic 55.0%
CGAGCAAACTGAAGCTGCGA+AGG - Chr3:101641029-101641048 MsG0380017864.01.T01:CDS 55.0%
GACATACCTCCTTGAGGAGC+TGG + Chr3:101640068-101640087 None:intergenic 55.0%
GAGTAGCTGCAGCTGTACCT+GGG - Chr3:101642483-101642502 MsG0380017864.01.T01:intron 55.0%
GCAAACTGAAGCTGCGAAGG+AGG - Chr3:101641032-101641051 MsG0380017864.01.T01:CDS 55.0%
GCGGATAGCATAGCGAGAAG+GGG + Chr3:101639344-101639363 None:intergenic 55.0%
GCGTTGAAATATGACCCGGC+TGG - Chr3:101640712-101640731 MsG0380017864.01.T01:CDS 55.0%
TATGAGGAATGGGCGGTGGT+CGG - Chr3:101641221-101641240 MsG0380017864.01.T01:intron 55.0%
TCATGTGCCCAGGCGTATGT+AGG + Chr3:101639114-101639133 None:intergenic 55.0%
TGCCCAGGCGTATGTAGGTA+TGG + Chr3:101639109-101639128 None:intergenic 55.0%
TGGAGCGTGCGTGAGAAGAA+AGG - Chr3:101639795-101639814 MsG0380017864.01.T01:CDS 55.0%
! CTGCTTGTTGCTGTCGGTAC+CGG + Chr3:101642344-101642363 None:intergenic 55.0%
! TGGCTGTATCGGGCTTTTGG+AGG + Chr3:101642142-101642161 None:intergenic 55.0%
ACTCCGATCCCGCCACTTCA+CGG - Chr3:101640015-101640034 MsG0380017864.01.T01:CDS 60.0%
AGGGTTCAGAGCGAGAGAGC+TGG + Chr3:101639948-101639967 None:intergenic 60.0%
ATTTGCGGCCGTGAAGTGGC+GGG + Chr3:101640026-101640045 None:intergenic 60.0%
CACTGGATCACGGTCTTCCC+AGG + Chr3:101642503-101642522 None:intergenic 60.0%
CGAGTAGCTGCAGCTGTACC+TGG - Chr3:101642482-101642501 MsG0380017864.01.T01:intron 60.0%
GGACGGGTAACCGCAGGTAT+GGG - Chr3:101639075-101639094 MsG0380017864.01.T01:three_prime_UTR 60.0%
GGGTTCAGAGCGAGAGAGCT+GGG + Chr3:101639947-101639966 None:intergenic 60.0%
GGTTCAGAGCGAGAGAGCTG+GGG + Chr3:101639946-101639965 None:intergenic 60.0%
GTCGTCGTCATCGTCGGTGT+TGG + Chr3:101642308-101642327 None:intergenic 60.0%
GTTCAGAGCGAGAGAGCTGG+GGG + Chr3:101639945-101639964 None:intergenic 60.0%
!! GTTGCTGTCGGTACCGGTGT+TGG + Chr3:101642338-101642357 None:intergenic 60.0%
CGGACGGGTAACCGCAGGTA+TGG - Chr3:101639074-101639093 MsG0380017864.01.T01:three_prime_UTR 65.0%
GCGAGAAGGGGTAGGGATGG+AGG + Chr3:101639332-101639351 None:intergenic 65.0%
! AGAGGCGTGGTCTGCAGTGC+AGG - Chr3:101642400-101642419 MsG0380017864.01.T01:intron 65.0%
! TGGTTCGGACGGGTAACCGC+AGG - Chr3:101639069-101639088 MsG0380017864.01.T01:three_prime_UTR 65.0%
! CGGCCGTGAAGTGGCGGGAT+CGG + Chr3:101640021-101640040 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101638952 101642815 101638952 ID=MsG0380017864.01;Name=MsG0380017864.01
Chr3 mRNA 101638952 101642815 101638952 ID=MsG0380017864.01.T01;Parent=MsG0380017864.01;Name=MsG0380017864.01.T01;_AED=0.48;_eAED=0.52;_QI=0|0|0.5|1|1|1|2|235|741
Chr3 exon 101638952 101641219 101638952 ID=MsG0380017864.01.T01:exon:2535;Parent=MsG0380017864.01.T01
Chr3 exon 101642623 101642815 101642623 ID=MsG0380017864.01.T01:exon:2534;Parent=MsG0380017864.01.T01
Chr3 CDS 101642623 101642815 101642623 ID=MsG0380017864.01.T01:cds;Parent=MsG0380017864.01.T01
Chr3 CDS 101639187 101641219 101639187 ID=MsG0380017864.01.T01:cds;Parent=MsG0380017864.01.T01
Chr3 three_prime_UTR 101638952 101639186 101638952 ID=MsG0380017864.01.T01:three_prime_utr;Parent=MsG0380017864.01.T01
Gene Sequence

>MsG0380017864.01.T01

ATGGGTTCGGGGTGGGTACCTATATACTCGTTACCCGTCCCATACCCGTGTTTTGAAATCGGGGAAAACCCATACCCATACCCAAACCCAGTCAAAACAAACCCGTCAAATTGGGTTTGGTTCGGACGGGTAACCGCAGGTATGGGTTTTGTTGCCATACCTACATACGCCTGGGCACATGATGATGATATTGGTTTGGTGATTCAATTGAAGGATATCAAATACTATCAGTTTTTTGTATTTTGTTGGCCAGCCTCCATAATGGCTGTTCAAACAAAATACCGTCTTATTACTTACTCACAAGAGCTTGTAGATGGGCAGCCTATTTTTGTTTCGTCTAATTGTCTTCCGGTTAAGGCGTTGAAATATGACCCGGCTGGTCACTCTTTTCATGCTGCTGCACTTAAACTTCTCGGTGTTACAAAAGAAGATAACAAAGATGCTGATAAGAAGAATGTGGTTGAAGATAAGGAACATGTTTATTTGCCTTCTGATTCTTACAGCAGCAAGAGCAAGAAGAAATCTGGTGACGGAGACAAGCAACAGCAAGATCATTATGCATTATTGGGTTTGAGCCATCTTAGATATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCATAAAACTTCCTTGAGGTTTCATCCGGACAAACAGGCTGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCGAAGGAGGCAAAGAAGATTGAAATAGATGTTCATTTTAAGGCAATCCAAGAGGCTTATGCAGTGTTGGTCGATCCCGTAAAAAGAAGAATTTATGATTCTACAGACGAGTTTGATGATGAGATTCCCACTGACTGTGATCCACAAGACTTCTACAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCATCTCTAGGTGATGATAAGTCTTCAATAAAGGAAGTTGATAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCTGATGAGTTTGATCTTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAAAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTGAGAAGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAATATATGGCAAAGAAGTTGGAGGAGGAAGAAGCGGCCAGAATTGTTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGGTGAAAGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTATCTTGTCACAACACATACTTGATATTGCTGAAGACGATGTAGAAGAGCTTTGCATGTCATTTGATATCGAACAATTGAGGGGTTTGTGTGAGAAAATCGAAGGCAAAGAGGTGTTAGAGCAAGCAGAAGCTCTAAGAGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCAGTAGTTCTCTAGCAGGCTACACAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAAAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAGAGGAAACCTGCAGCACAATCAATTGCATCCCCATTGTCAACTAGAGAAGAATTGGAAGGGGTGTCAATACCAGCAACAACAACTGAAAATAGTGATGCAAAAACAACAACTACTATACCAACACCGACGATGACGACGACAACAATTCCAACACCGGTACCGACAGCAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGGCGTGGTCTGCAGTGCAGGAAAGAGCATTAGTTCAAGCTTTAAAAACCTTCCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACCGTGATCCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA

Protein sequence

>MsG0380017864.01.T01

MGSGWVPIYSLPVPYPCFEIGENPYPYPNPVKTNPSNWVWFGRVTAGMGFVAIPTYAWAHDDDIGLVIQLKDIKYYQFFVFCWPASIMAVQTKYRLITYSQELVDGQPIFVSSNCLPVKALKYDPAGHSFHAAALKLLGVTKEDNKDADKKNVVEDKEHVYLPSDSYSSKSKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSWREFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKKLEEEEAARIVEEEKQRKAEEDKKAAEAALQQKKVKEKEKKLLRKERTRLRTLSRPILSQHILDIAEDDVEELCMSFDIEQLRGLCEKIEGKEVLEQAEALRDALSCKKNVVDEKSNQQNGSVKANGSSSSLAGYTEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTTENSDAKTTTTIPTPTMTTTTIPTPVPTATSSINSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKENFRNKKTAV*