AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017496.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017496.01.T01 MTR_3g107920 96.951 164 2 1 1 161 48 211 3.95e-114 329
MsG0380017496.01.T01 MTR_3g107920 70.000 60 15 1 143 199 288 347 1.23e-17 79.7
MsG0380017496.01.T01 MTR_8g006995 39.759 83 50 0 78 160 50 132 9.34e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017496.01.T01 AT2G20060 60.227 176 48 4 1 161 1 169 1.48e-62 196
MsG0380017496.01.T01 AT2G20060 87.500 32 4 0 162 193 268 299 4.53e-12 63.9

Find 69 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACCTCAACCATTTATT+TGG 0.072403 3:-97012402 None:intergenic
CAACGAAGACAAGGGCTTTA+TGG 0.163918 3:+97007466 MsG0380017496.01.T01:CDS
CCCAGTGCTGCTGGGTTATA+TGG 0.172532 3:+97006658 MsG0380017496.01.T01:CDS
TTATTTGGGTGTGGATTTAT+TGG 0.194249 3:-97012387 None:intergenic
CAAGATTAAAACTTAGGATT+TGG 0.270503 3:+97012576 MsG0380017496.01.T01:three_prime_UTR
CTCAAATGGTTAAGTTGTTA+TGG 0.283472 3:+97012616 MsG0380017496.01.T01:three_prime_UTR
TAAATCCACACCCAAATAAA+TGG 0.297256 3:+97012391 MsG0380017496.01.T01:exon
AATTCTGTTCACAGCATCTT+TGG 0.299153 3:-97012339 None:intergenic
TTTGATTCACCCAGTGCTGC+TGG 0.304551 3:+97006649 MsG0380017496.01.T01:CDS
TTGCTCGACCAGTTCCCTTT+TGG 0.310177 3:-97008500 None:intergenic
CTCTTCTCTTGCCGCTAGTT+AGG 0.347311 3:+97006372 MsG0380017496.01.T01:five_prime_UTR
TCGTTGTGAAAGTTGGTAAC+TGG 0.350576 3:-97007449 None:intergenic
GTAGGTTGATTCTTCAGTTA+TGG 0.350673 3:+97006570 MsG0380017496.01.T01:intron
ATAAGAACGAAGTAGCCTTT+TGG 0.352444 3:-97006605 None:intergenic
CCAGTGCTGCTGGGTTATAT+GGG 0.354877 3:+97006659 MsG0380017496.01.T01:CDS
ACTTCGTTCTTATCAATCCT+TGG 0.359360 3:+97006615 MsG0380017496.01.T01:CDS
ATTAGTGAGGTCAGTGGGAC+TGG 0.362388 3:+97008462 MsG0380017496.01.T01:CDS
AACTTCATTTACTCAGGATT+AGG 0.367891 3:+97012440 MsG0380017496.01.T01:three_prime_UTR
CCCATATAACCCAGCAGCAC+TGG 0.368405 3:-97006659 None:intergenic
GGTGTGGATTTATTGGAGAT+TGG 0.392265 3:-97012380 None:intergenic
ACTACCTCAACCATTTATTT+GGG 0.392940 3:-97012401 None:intergenic
GCAACATCTGAGCGTGATAT+AGG 0.405707 3:+97006881 MsG0380017496.01.T01:CDS
CTCAAGCAAAATATTCTCAT+TGG 0.412421 3:-97012502 None:intergenic
TGGGTCATTGCGTGGGCCTC+AGG 0.414756 3:+97008527 MsG0380017496.01.T01:CDS
TTGTTTCAAGATTAAAACTT+AGG 0.418739 3:+97012570 MsG0380017496.01.T01:three_prime_UTR
CTTCGTTCTTATCAATCCTT+GGG 0.423517 3:+97006616 MsG0380017496.01.T01:CDS
CATTTCTGCTCACCGTATCT+TGG 0.423638 3:+97006690 MsG0380017496.01.T01:CDS
GGTTTCTGATAAAATTATAC+AGG 0.430088 3:+97012524 MsG0380017496.01.T01:three_prime_UTR
CTCAACCATTTATTTGGGTG+TGG 0.441163 3:-97012396 None:intergenic
TTATGCTGCAGGGCTCTGTC+AGG 0.442320 3:+97007415 MsG0380017496.01.T01:intron
GAGAAAGCCTTGGAACCAAA+AGG 0.454529 3:+97008485 MsG0380017496.01.T01:CDS
GAAACAAACCTGTTGGTTCT+CGG 0.461567 3:+97006308 None:intergenic
GCAGCGTGCAAAACGCCAAC+AGG 0.466799 3:+97007553 MsG0380017496.01.T01:CDS
CTTGTCTTCGTTGTGAAAGT+TGG 0.471718 3:-97007456 None:intergenic
CAGTAGAAGTAGAAAAGCGT+TGG 0.484013 3:-97006814 None:intergenic
TGAACTATATCCTTCCGAAT+AGG 0.487787 3:-97007515 None:intergenic
CCTTGGAACCAAAAGGGAAC+TGG 0.491414 3:+97008492 MsG0380017496.01.T01:CDS
TGGCTTCTTTCATCTCCAAA+AGG 0.496230 3:+97006590 MsG0380017496.01.T01:CDS
GCAAGGCATGGGTCATTGCG+TGG 0.496788 3:+97008519 MsG0380017496.01.T01:CDS
TTGATTCACCCAGTGCTGCT+GGG 0.499368 3:+97006650 MsG0380017496.01.T01:CDS
GTACTAAACTTCATTTACTC+AGG 0.508949 3:+97012434 MsG0380017496.01.T01:three_prime_UTR
CCATATAACCCAGCAGCACT+GGG 0.532120 3:-97006658 None:intergenic
ATTAAAACTTAGGATTTGGA+TGG 0.533638 3:+97012580 MsG0380017496.01.T01:three_prime_UTR
TAAGTTGTTATGGTTTCCGA+TGG 0.540692 3:+97012626 MsG0380017496.01.T01:three_prime_UTR
AAAGCGTTGGGTGATTGATC+CGG 0.543562 3:-97006801 None:intergenic
TTAGTGAGGTCAGTGGGACT+GGG 0.544271 3:+97008463 MsG0380017496.01.T01:CDS
GTGGGACTGGGAGAAAGCCT+TGG 0.549232 3:+97008475 MsG0380017496.01.T01:CDS
GTTCTTATCAATCCTTGGGA+CGG 0.549673 3:+97006620 MsG0380017496.01.T01:CDS
CAACTTTCACAACGAAGACA+AGG 0.552359 3:+97007457 MsG0380017496.01.T01:CDS
AGAAAGCCTTGGAACCAAAA+GGG 0.558506 3:+97008486 MsG0380017496.01.T01:CDS
GGAACTGGTCGAGCAAGGCA+TGG 0.559028 3:+97008507 MsG0380017496.01.T01:CDS
GAATGCAATGTACCAAGATA+CGG 0.566350 3:-97006702 None:intergenic
CAAGGCATGGGTCATTGCGT+GGG 0.570939 3:+97008520 MsG0380017496.01.T01:CDS
AGTAGAAGTAGAAAAGCGTT+GGG 0.572426 3:-97006813 None:intergenic
AAACTATTAGTGAGGTCAGT+GGG 0.576745 3:+97008457 MsG0380017496.01.T01:CDS
CACACCCAAATAAATGGTTG+AGG 0.579840 3:+97012397 MsG0380017496.01.T01:exon
CAGTGCTGCTGGGTTATATG+GGG 0.586267 3:+97006660 MsG0380017496.01.T01:CDS
GAACTGGTCGAGCAAGGCAT+GGG 0.586611 3:+97008508 MsG0380017496.01.T01:CDS
ATCAAAGCAGCGCCGTCCCA+AGG 0.588028 3:-97006632 None:intergenic
AAAAGGGAACTGGTCGAGCA+AGG 0.599214 3:+97008502 MsG0380017496.01.T01:CDS
ATCACTGTGTTACAGAAATG+AGG 0.601606 3:-97012479 None:intergenic
AAGAGAAGAGAACATAAATG+AGG 0.610352 3:-97006359 None:intergenic
GTGTTACAGAAATGAGGACA+TGG 0.610594 3:-97012473 None:intergenic
AACTTTCACAACGAAGACAA+GGG 0.614854 3:+97007458 MsG0380017496.01.T01:CDS
TGTTACAGAAATGAGGACAT+GGG 0.643485 3:-97012472 None:intergenic
CACGCTGCCACAAAACAACA+CGG 0.652436 3:-97007538 None:intergenic
GTTACAGAAATGAGGACATG+GGG 0.672070 3:-97012471 None:intergenic
AAAACTATTAGTGAGGTCAG+TGG 0.674538 3:+97008456 MsG0380017496.01.T01:CDS
TCACGCTCAGATGTTGCGAG+AGG 0.692190 3:-97006875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAAATAGAAAATTTA+TGG - Chr3:97009821-97009840 None:intergenic 10.0%
!! GTAATTTAAAAAATTATAGT+GGG - Chr3:97009772-97009791 None:intergenic 10.0%
!!! ATTATTATTTTTCCATATTT+TGG - Chr3:97010601-97010620 None:intergenic 10.0%
!!! CACTATAATTTTTTAAATTA+CGG + Chr3:97009771-97009790 MsG0380017496.01.T01:intron 10.0%
!!! TATTTAATTTTTAAGAAAGA+AGG - Chr3:97008797-97008816 None:intergenic 10.0%
!!! TTATTATTTTTCCATATTTT+GGG - Chr3:97010600-97010619 None:intergenic 10.0%
!!! TTTATAAATTTTCATTTAAC+AGG - Chr3:97009487-97009506 None:intergenic 10.0%
!!! TTTTATTATAGACAATTTAA+AGG + Chr3:97010088-97010107 MsG0380017496.01.T01:intron 10.0%
!! AAAAAAAAAAACATTGTCAA+AGG - Chr3:97007286-97007305 None:intergenic 15.0%
!! AAAACTTAGATTTGTATTTA+TGG - Chr3:97007256-97007275 None:intergenic 15.0%
!! AAATTGTCTATAATAAAAGT+TGG - Chr3:97010086-97010105 None:intergenic 15.0%
!! AACTCATAAAATAAAGAAAA+AGG + Chr3:97011100-97011119 MsG0380017496.01.T01:intron 15.0%
!! AATAACAAAAAGTTAGTTAT+AGG + Chr3:97010138-97010157 MsG0380017496.01.T01:intron 15.0%
!! AATTGTCTATAATAAAAGTT+GGG - Chr3:97010085-97010104 None:intergenic 15.0%
!! ACAGTTATATTGATATATAT+TGG + Chr3:97007205-97007224 MsG0380017496.01.T01:intron 15.0%
!! ACTTAGATATAAATATCTTA+TGG + Chr3:97007109-97007128 MsG0380017496.01.T01:intron 15.0%
!! ATAACAAAAAGTTAGTTATA+GGG + Chr3:97010139-97010158 MsG0380017496.01.T01:intron 15.0%
!! ATATGGAAAAATAATAATCT+AGG + Chr3:97010603-97010622 MsG0380017496.01.T01:intron 15.0%
!! ATATTATGAATGAAAATATC+CGG - Chr3:97011966-97011985 None:intergenic 15.0%
!! ATCTAAGTATATTATTAATG+TGG + Chr3:97007388-97007407 MsG0380017496.01.T01:intron 15.0%
!! ATTACAAAAATAAACCAATA+TGG - Chr3:97009511-97009530 None:intergenic 15.0%
!! CGTAATTTAAAAAATTATAG+TGG - Chr3:97009773-97009792 None:intergenic 15.0%
!! TAAATTAACTATTCCATATT+AGG - Chr3:97009847-97009866 None:intergenic 15.0%
!! TATGAATATGTGATTATAAA+CGG + Chr3:97009105-97009124 MsG0380017496.01.T01:intron 15.0%
!! TTACAAAAATAAACCAATAT+GGG - Chr3:97009510-97009529 None:intergenic 15.0%
!! TTATTTATTTAAATGTAGAC+CGG + Chr3:97006782-97006801 MsG0380017496.01.T01:intron 15.0%
!!! ATAAGATCAACAATATTTTA+AGG - Chr3:97012071-97012090 None:intergenic 15.0%
!!! ATTTGAAATTTATCCTAATA+TGG + Chr3:97009831-97009850 MsG0380017496.01.T01:intron 15.0%
!!! ATTTTTTAACATGTTTTTGT+AGG + Chr3:97012271-97012290 MsG0380017496.01.T01:intron 15.0%
!!! TCTATATTTTGAAATACATT+TGG - Chr3:97011798-97011817 None:intergenic 15.0%
!!! TTTTTTAACATGTTTTTGTA+GGG + Chr3:97012272-97012291 MsG0380017496.01.T01:intron 15.0%
!! AAAAATATATGTATGAGCAA+AGG - Chr3:97012257-97012276 None:intergenic 20.0%
!! AAAATAAATGAATGAGTGAA+GGG - Chr3:97006522-97006541 None:intergenic 20.0%
!! AAAATATTAAAGAAAGTAGC+TGG - Chr3:97009356-97009375 None:intergenic 20.0%
!! AAATATTAAAGAAAGTAGCT+GGG - Chr3:97009355-97009374 None:intergenic 20.0%
!! AAGTATAAAAGGGATAATTA+TGG - Chr3:97011270-97011289 None:intergenic 20.0%
!! AATATATCAATGGTTATCAA+TGG + Chr3:97010199-97010218 MsG0380017496.01.T01:intron 20.0%
!! AATGAATGTCTGTTTATAAA+TGG + Chr3:97010454-97010473 MsG0380017496.01.T01:intron 20.0%
!! AATTCTTTCATTTGTCAATT+AGG - Chr3:97007963-97007982 None:intergenic 20.0%
!! AGATGTTAGAATATATCATA+TGG + Chr3:97010894-97010913 MsG0380017496.01.T01:intron 20.0%
!! ATAGTCATAGGATATATAAA+GGG - Chr3:97008276-97008295 None:intergenic 20.0%
!! ATATACAAATTGCTTTAGTA+TGG + Chr3:97009203-97009222 MsG0380017496.01.T01:intron 20.0%
!! ATGAATATGTGATTATAAAC+GGG + Chr3:97009106-97009125 MsG0380017496.01.T01:intron 20.0%
!! ATGAATGTCTGTTTATAAAT+GGG + Chr3:97010455-97010474 MsG0380017496.01.T01:intron 20.0%
!! ATTGAAACATATACAATTCT+TGG - Chr3:97007856-97007875 None:intergenic 20.0%
!! GAAAAAATTCAAAAAGTTCT+TGG - Chr3:97011434-97011453 None:intergenic 20.0%
!! GAAAATTTATAAACCCATAT+TGG + Chr3:97009494-97009513 MsG0380017496.01.T01:intron 20.0%
!! GATAAAAAGAAAAATGATTG+AGG - Chr3:97007713-97007732 None:intergenic 20.0%
!! GATATTTATATCTAAGTTAC+AGG - Chr3:97007106-97007125 None:intergenic 20.0%
!! TAAATATTAAAAAAAGGACG+TGG + Chr3:97009890-97009909 MsG0380017496.01.T01:intron 20.0%
!! TACAGTTAAACTAGTATAAA+TGG - Chr3:97010943-97010962 None:intergenic 20.0%
!! TATAACTTTACAGCAAAAAA+AGG - Chr3:97010690-97010709 None:intergenic 20.0%
!! TATTATAGACAATTTAAAGG+CGG + Chr3:97010091-97010110 MsG0380017496.01.T01:intron 20.0%
!! TATTATGAATGAAAATATCC+GGG - Chr3:97011965-97011984 None:intergenic 20.0%
!! TGATTAAGAAAATAACTATG+AGG - Chr3:97011838-97011857 None:intergenic 20.0%
!! TGTATTTGGTATTCAAATTA+CGG + Chr3:97009724-97009743 MsG0380017496.01.T01:intron 20.0%
!! TTGTTTCAAGATTAAAACTT+AGG + Chr3:97012570-97012589 MsG0380017496.01.T01:three_prime_UTR 20.0%
!!! AAACATATTGTTTCATGTTT+TGG + Chr3:97008917-97008936 MsG0380017496.01.T01:intron 20.0%
!!! ACAATATTCTTATTTCTTGT+AGG + Chr3:97008972-97008991 MsG0380017496.01.T01:intron 20.0%
!!! ATGTTTTTTCTTTTTGAAAC+TGG + Chr3:97009637-97009656 MsG0380017496.01.T01:intron 20.0%
!!! ATTTAAAAAATTATAGTGGG+TGG - Chr3:97009769-97009788 None:intergenic 20.0%
!!! CTTTATTTCAATTCAATTGT+AGG + Chr3:97006552-97006571 MsG0380017496.01.T01:intron 20.0%
!!! TCTGAAAAATATTTTATGCA+GGG + Chr3:97009270-97009289 MsG0380017496.01.T01:intron 20.0%
!!! TTTGAATTTTTTCAATCAAC+TGG + Chr3:97011441-97011460 MsG0380017496.01.T01:intron 20.0%
!!! TTTGTAATTTTTCATGTGAA+AGG + Chr3:97009523-97009542 MsG0380017496.01.T01:intron 20.0%
!!! TTTTGGACAATAAATAACTA+AGG + Chr3:97007808-97007827 MsG0380017496.01.T01:intron 20.0%
! AAACTAGTATAAATGGTTCT+AGG - Chr3:97010936-97010955 None:intergenic 25.0%
! AATATTAAAGAAAGTAGCTG+GGG - Chr3:97009354-97009373 None:intergenic 25.0%
! ATAGGATATATAAAGGGAAA+AGG - Chr3:97008270-97008289 None:intergenic 25.0%
! ATATAGCTGTAACAAATATC+AGG + Chr3:97007660-97007679 MsG0380017496.01.T01:intron 25.0%
! ATATATCAATATAACTGTCG+TGG - Chr3:97007203-97007222 None:intergenic 25.0%
! ATTAAAACTTAGGATTTGGA+TGG + Chr3:97012580-97012599 MsG0380017496.01.T01:three_prime_UTR 25.0%
! ATTATAGACAATTTAAAGGC+GGG + Chr3:97010092-97010111 MsG0380017496.01.T01:intron 25.0%
! ATTCATATATCATCCAATCT+GGG - Chr3:97010437-97010456 None:intergenic 25.0%
! ATTCATGTAATACAGAATGA+TGG - Chr3:97006922-97006941 None:intergenic 25.0%
! ATTTATGTGACTTTGCTTAA+GGG + Chr3:97009670-97009689 MsG0380017496.01.T01:intron 25.0%
! CAAAATAAATGAATGAGTGA+AGG - Chr3:97006523-97006542 None:intergenic 25.0%
! CAAGATTAAAACTTAGGATT+TGG + Chr3:97012576-97012595 MsG0380017496.01.T01:three_prime_UTR 25.0%
! CCAGAATTTATTCTAATGTA+AGG - Chr3:97007989-97008008 None:intergenic 25.0%
! CCTTACATTAGAATAAATTC+TGG + Chr3:97007986-97008005 MsG0380017496.01.T01:intron 25.0%
! CTATAATAAAAGTTGGGAAT+GGG - Chr3:97010079-97010098 None:intergenic 25.0%
! CTTGAATTTGATGTTGTATT+TGG + Chr3:97009710-97009729 MsG0380017496.01.T01:intron 25.0%
! CTTTCACTTTACATATGATA+GGG + Chr3:97007926-97007945 MsG0380017496.01.T01:intron 25.0%
! GAAATAAAAAACATGATGGT+GGG - Chr3:97006437-97006456 None:intergenic 25.0%
! GACAAACTTTAGGTATAAAA+TGG - Chr3:97007058-97007077 None:intergenic 25.0%
! GACAATAAATAACTAAGGTT+TGG + Chr3:97007813-97007832 MsG0380017496.01.T01:intron 25.0%
! GATAGTCATAGGATATATAA+AGG - Chr3:97008277-97008296 None:intergenic 25.0%
! GGTTTCTGATAAAATTATAC+AGG + Chr3:97012524-97012543 MsG0380017496.01.T01:three_prime_UTR 25.0%
! TATATATATATAACCGATGC+AGG + Chr3:97010767-97010786 MsG0380017496.01.T01:intron 25.0%
! TCTATAATAAAAGTTGGGAA+TGG - Chr3:97010080-97010099 None:intergenic 25.0%
! TCTTTCACTTTACATATGAT+AGG + Chr3:97007925-97007944 MsG0380017496.01.T01:intron 25.0%
! TGAATATGTGATTATAAACG+GGG + Chr3:97009107-97009126 MsG0380017496.01.T01:intron 25.0%
! TTCAACAAAAACTATTAGTG+AGG + Chr3:97008449-97008468 MsG0380017496.01.T01:CDS 25.0%
! TTGATGAAGACGAATAATAA+TGG + Chr3:97010006-97010025 MsG0380017496.01.T01:intron 25.0%
! TTGTAAGCAACAAAAGTTAA+CGG - Chr3:97006480-97006499 None:intergenic 25.0%
!! AAATAAAAAACATGATGGTG+GGG - Chr3:97006436-97006455 None:intergenic 25.0%
!! AATATTTTATGCAGGGATAA+TGG + Chr3:97009277-97009296 MsG0380017496.01.T01:intron 25.0%
!! ACAATCGCAAAAAGTATAAA+AGG - Chr3:97011281-97011300 None:intergenic 25.0%
!! ATTGCAATAAGACGTTATTT+TGG - Chr3:97011209-97011228 None:intergenic 25.0%
!! CAATCGCAAAAAGTATAAAA+GGG - Chr3:97011280-97011299 None:intergenic 25.0%
!! CTACTAGTAGATATCTTTTA+GGG + Chr3:97011628-97011647 MsG0380017496.01.T01:intron 25.0%
!! GAAAATAACTATGAGGATTT+TGG - Chr3:97011831-97011850 None:intergenic 25.0%
!! GTCTGAAAAATATTTTATGC+AGG + Chr3:97009269-97009288 MsG0380017496.01.T01:intron 25.0%
!! TATTTTGTTGCATGATACTT+TGG + Chr3:97012310-97012329 MsG0380017496.01.T01:CDS 25.0%
!! TCTAAAATTGAAGGAATTTG+TGG + Chr3:97007154-97007173 MsG0380017496.01.T01:intron 25.0%
!! TCTACTAGTAGATATCTTTT+AGG + Chr3:97011627-97011646 MsG0380017496.01.T01:intron 25.0%
!! TGATATTTGTTACAGCTATA+TGG - Chr3:97007661-97007680 None:intergenic 25.0%
!! TTTATCATTTTGAATTGCTC+TGG + Chr3:97007727-97007746 MsG0380017496.01.T01:intron 25.0%
!! TTTTCCAGATCTGAATTTTT+AGG + Chr3:97009961-97009980 MsG0380017496.01.T01:intron 25.0%
!! TTTTCCCTTGATTACAATTA+GGG - Chr3:97011079-97011098 None:intergenic 25.0%
!! TTTTTCCCTTGATTACAATT+AGG - Chr3:97011080-97011099 None:intergenic 25.0%
!!! AACTTTAGCTTTTCATTTAC+AGG - Chr3:97011502-97011521 None:intergenic 25.0%
!!! ACTTTAGCTTTTCATTTACA+GGG - Chr3:97011501-97011520 None:intergenic 25.0%
!!! AGAATAAATTCTGGAATACT+GGG + Chr3:97007995-97008014 MsG0380017496.01.T01:intron 25.0%
!!! ATGTTTTTGATATGCCTATT+CGG + Chr3:97007501-97007520 MsG0380017496.01.T01:CDS 25.0%
!!! CAAGTTGATTCTTAGAATTT+GGG - Chr3:97010529-97010548 None:intergenic 25.0%
!!! CTATTTTGTCTCTAAAAATG+AGG - Chr3:97010812-97010831 None:intergenic 25.0%
!!! GTGAAATTTTAATGCTCAAA+TGG + Chr3:97012602-97012621 MsG0380017496.01.T01:three_prime_UTR 25.0%
!!! TAGAATAAATTCTGGAATAC+TGG + Chr3:97007994-97008013 MsG0380017496.01.T01:intron 25.0%
!!! TCGTTATCTTCTGAAAATTT+TGG + Chr3:97009610-97009629 MsG0380017496.01.T01:intron 25.0%
!!! TTTTTGAAACTGGAAAAATC+TGG + Chr3:97009647-97009666 MsG0380017496.01.T01:intron 25.0%
AAAATGATTGAGGATTTCCA+CGG - Chr3:97007703-97007722 None:intergenic 30.0%
AAACTGATACTTACAATGGA+TGG - Chr3:97011559-97011578 None:intergenic 30.0%
AAAGACAATGAGAAAATCAG+AGG - Chr3:97008111-97008130 None:intergenic 30.0%
AAATCTTATAGAAGCAACAC+GGG - Chr3:97011584-97011603 None:intergenic 30.0%
AACTTCATTTACTCAGGATT+AGG + Chr3:97012440-97012459 MsG0380017496.01.T01:three_prime_UTR 30.0%
AAGAAGAAAGATGAGATTCA+TGG - Chr3:97009464-97009483 None:intergenic 30.0%
AAGACAATGAGAAAATCAGA+GGG - Chr3:97008110-97008129 None:intergenic 30.0%
AAGAGAAGAGAACATAAATG+AGG - Chr3:97006362-97006381 None:intergenic 30.0%
AAGATTTATAGCATTTCCGT+TGG - Chr3:97007625-97007644 None:intergenic 30.0%
AATGCATTGTAGATGATCAT+TGG - Chr3:97006987-97007006 None:intergenic 30.0%
ACGGAAATGCTATAAATCTT+AGG + Chr3:97007625-97007644 MsG0380017496.01.T01:intron 30.0%
ACTACCTCAACCATTTATTT+GGG - Chr3:97012404-97012423 None:intergenic 30.0%
AGAAGAAGAAGAAGAAAAAG+AGG - Chr3:97006400-97006419 None:intergenic 30.0%
AGCGGAAATAAAAAACATGA+TGG - Chr3:97006441-97006460 None:intergenic 30.0%
ATGAGAAAGTAATTGGTGTA+TGG + Chr3:97010222-97010241 MsG0380017496.01.T01:intron 30.0%
ATTAATTACCACCACTGAAT+GGG - Chr3:97008598-97008617 None:intergenic 30.0%
CATTCATATATCATCCAATC+TGG - Chr3:97010438-97010457 None:intergenic 30.0%
CTCAAGCAAAATATTCTCAT+TGG - Chr3:97012505-97012524 None:intergenic 30.0%
GAAATCTTATAGAAGCAACA+CGG - Chr3:97011585-97011604 None:intergenic 30.0%
GAATAATCCAAATTGAAGAG+TGG - Chr3:97009425-97009444 None:intergenic 30.0%
GATCCATCTTACAAAAATGA+TGG - Chr3:97012189-97012208 None:intergenic 30.0%
GATTTATGTGACTTTGCTTA+AGG + Chr3:97009669-97009688 MsG0380017496.01.T01:intron 30.0%
GGAAATAAAAAACATGATGG+TGG - Chr3:97006438-97006457 None:intergenic 30.0%
GGTAAAACTGATACTTACAA+TGG - Chr3:97011563-97011582 None:intergenic 30.0%
GTAACCCTAATTGTAATCAA+GGG + Chr3:97011072-97011091 MsG0380017496.01.T01:intron 30.0%
GTACTAAACTTCATTTACTC+AGG + Chr3:97012434-97012453 MsG0380017496.01.T01:three_prime_UTR 30.0%
TAAATCCACACCCAAATAAA+TGG + Chr3:97012391-97012410 MsG0380017496.01.T01:exon 30.0%
TAAGAAAGAAGGCAATGATA+AGG - Chr3:97008786-97008805 None:intergenic 30.0%
TACAATTAGGGTTACATACA+TGG - Chr3:97011067-97011086 None:intergenic 30.0%
TACTACCTCAACCATTTATT+TGG - Chr3:97012405-97012424 None:intergenic 30.0%
TATATAAAGGGAAAAGGAAG+TGG - Chr3:97008264-97008283 None:intergenic 30.0%
TATGTAGTGTGAATTTACTC+TGG + Chr3:97009009-97009028 MsG0380017496.01.T01:intron 30.0%
TATTAATTACCACCACTGAA+TGG - Chr3:97008599-97008618 None:intergenic 30.0%
TCAAACTCAATAAGAAGGTT+CGG + Chr3:97008688-97008707 MsG0380017496.01.T01:intron 30.0%
TCAATGGATGAGAAAGTAAT+TGG + Chr3:97010215-97010234 MsG0380017496.01.T01:intron 30.0%
TCATAGCATCTAGTAATAAG+AGG + Chr3:97008299-97008318 MsG0380017496.01.T01:intron 30.0%
TCCAAAGTATGGTCAATAAA+GGG + Chr3:97011004-97011023 MsG0380017496.01.T01:intron 30.0%
TCTGTATTACATGAATATGC+TGG + Chr3:97006926-97006945 MsG0380017496.01.T01:intron 30.0%
TCTTCCTAAAAATTCAGATC+TGG - Chr3:97009968-97009987 None:intergenic 30.0%
TGCTTCTATAAGATTTCTCA+TGG + Chr3:97011588-97011607 MsG0380017496.01.T01:intron 30.0%
TGTAACCCTAATTGTAATCA+AGG + Chr3:97011071-97011090 MsG0380017496.01.T01:intron 30.0%
TTACCTGCTACATTAAAAGA+AGG + Chr3:97009240-97009259 MsG0380017496.01.T01:intron 30.0%
TTATAGACAATTTAAAGGCG+GGG + Chr3:97010093-97010112 MsG0380017496.01.T01:intron 30.0%
TTATTTGGGTGTGGATTTAT+TGG - Chr3:97012390-97012409 None:intergenic 30.0%
TTGATTCTTAGAATTTGGGT+TGG - Chr3:97010525-97010544 None:intergenic 30.0%
TTTATGTGACTTTGCTTAAG+GGG + Chr3:97009671-97009690 MsG0380017496.01.T01:intron 30.0%
! AATAACTATGAGGATTTTGG+AGG - Chr3:97011828-97011847 None:intergenic 30.0%
! ACAAATTTGTGTTTTGTGCA+TGG + Chr3:97010248-97010267 MsG0380017496.01.T01:intron 30.0%
! ATAACTATGAGGATTTTGGA+GGG - Chr3:97011827-97011846 None:intergenic 30.0%
! ATGCTATGATTGATAGTCAT+AGG - Chr3:97008288-97008307 None:intergenic 30.0%
! CAATGAGAATATTTTGCTTG+AGG + Chr3:97012503-97012522 MsG0380017496.01.T01:three_prime_UTR 30.0%
! CAGATATGAACATTTTCTTG+TGG + Chr3:97009932-97009951 MsG0380017496.01.T01:intron 30.0%
! CCTTACAAAACTAACTTGTA+AGG - Chr3:97010491-97010510 None:intergenic 30.0%
! CTCAAATGGTTAAGTTGTTA+TGG + Chr3:97012616-97012635 MsG0380017496.01.T01:three_prime_UTR 30.0%
! GCAGACAAACATTTAGATTT+TGG + Chr3:97007791-97007810 MsG0380017496.01.T01:intron 30.0%
! GTATTGATCGCATTATGATT+TGG + Chr3:97007575-97007594 MsG0380017496.01.T01:intron 30.0%
! TGATTCTTAGAATTTGGGTT+GGG - Chr3:97010524-97010543 None:intergenic 30.0%
! TTAGCTATCAAATTTTCCTG+CGG + Chr3:97008381-97008400 MsG0380017496.01.T01:intron 30.0%
! TTTCCTTCTTTTAATGTAGC+AGG - Chr3:97009246-97009265 None:intergenic 30.0%
! TTTTTGGACAATAAGTCAGA+TGG - Chr3:97006854-97006873 None:intergenic 30.0%
!! AATAAAAAACATGATGGTGG+GGG - Chr3:97006435-97006454 None:intergenic 30.0%
!! ATCTAGCTTTCAGCTAATAT+GGG - Chr3:97009328-97009347 None:intergenic 30.0%
!! GCAAGTTGATTCTTAGAATT+TGG - Chr3:97010530-97010549 None:intergenic 30.0%
!! GTGATCAACATATAATGGAT+TGG + Chr3:97008323-97008342 MsG0380017496.01.T01:intron 30.0%
!! TAAAAAATTATAGTGGGTGG+AGG - Chr3:97009766-97009785 None:intergenic 30.0%
!! TATCTAGCTTTCAGCTAATA+TGG - Chr3:97009329-97009348 None:intergenic 30.0%
!! TCTCCATCATTTTTGTAAGA+TGG + Chr3:97012183-97012202 MsG0380017496.01.T01:intron 30.0%
!!! CCTTACAAGTTAGTTTTGTA+AGG + Chr3:97010488-97010507 MsG0380017496.01.T01:intron 30.0%
!!! GAATTTTTTCAATCAACTGG+AGG + Chr3:97011444-97011463 MsG0380017496.01.T01:intron 30.0%
!!! TAGTTTTGTAAGGTTGAGTT+AGG + Chr3:97010498-97010517 MsG0380017496.01.T01:intron 30.0%
AAAACTATTAGTGAGGTCAG+TGG + Chr3:97008456-97008475 MsG0380017496.01.T01:CDS 35.0%
AAACTATTAGTGAGGTCAGT+GGG + Chr3:97008457-97008476 MsG0380017496.01.T01:CDS 35.0%
AAACTTCTGATCGTAGATGA+CGG + Chr3:97011475-97011494 MsG0380017496.01.T01:intron 35.0%
AACTTTCACAACGAAGACAA+GGG + Chr3:97007458-97007477 MsG0380017496.01.T01:CDS 35.0%
AAGAAAGATGAGATTCATGG+TGG - Chr3:97009461-97009480 None:intergenic 35.0%
AATGATAAGGAGAGTGATAG+AGG - Chr3:97008773-97008792 None:intergenic 35.0%
AATGGGAGGAGGAATAAAAT+GGG - Chr3:97008581-97008600 None:intergenic 35.0%
AATTCTGTTCACAGCATCTT+TGG - Chr3:97012342-97012361 None:intergenic 35.0%
ACCCTTTATTGACCATACTT+TGG - Chr3:97011008-97011027 None:intergenic 35.0%
ACTTCGTTCTTATCAATCCT+TGG + Chr3:97006615-97006634 MsG0380017496.01.T01:CDS 35.0%
ATAATGCGATCAATACCTGT+TGG - Chr3:97007571-97007590 None:intergenic 35.0%
ATCACTGTGTTACAGAAATG+AGG - Chr3:97012482-97012501 None:intergenic 35.0%
ATCTACGATCAGAAGTTTCT+TGG - Chr3:97011473-97011492 None:intergenic 35.0%
CAATGTTAAGAGTCTCACAT+TGG + Chr3:97009071-97009090 MsG0380017496.01.T01:intron 35.0%
CGCTTTCAAACTCAATAAGA+AGG + Chr3:97008683-97008702 MsG0380017496.01.T01:intron 35.0%
CTAACCCAACTATACAAAAC+CGG - Chr3:97010285-97010304 None:intergenic 35.0%
CTCCAAAGTATGGTCAATAA+AGG + Chr3:97011003-97011022 MsG0380017496.01.T01:intron 35.0%
CTTCGTTCTTATCAATCCTT+GGG + Chr3:97006616-97006635 MsG0380017496.01.T01:CDS 35.0%
CTTGAGTCTTGACAAACTTT+AGG - Chr3:97007068-97007087 None:intergenic 35.0%
GAATGCAATGTACCAAGATA+CGG - Chr3:97006705-97006724 None:intergenic 35.0%
TAAAGAATGTTCTGTACCTG+AGG - Chr3:97008546-97008565 None:intergenic 35.0%
TAACCCAACTATACAAAACC+GGG - Chr3:97010284-97010303 None:intergenic 35.0%
TAAGTTGTTATGGTTTCCGA+TGG + Chr3:97012626-97012645 MsG0380017496.01.T01:three_prime_UTR 35.0%
TAATCCAAATTGAAGAGTGG+AGG - Chr3:97009422-97009441 None:intergenic 35.0%
TAATGAATGGCAACAGTTCA+GGG + Chr3:97008623-97008642 MsG0380017496.01.T01:intron 35.0%
TAGATTCTTCAGTCTGAGTT+TGG + Chr3:97012101-97012120 MsG0380017496.01.T01:intron 35.0%
TATACAGCTTCTAGTGTTTG+AGG + Chr3:97011384-97011403 MsG0380017496.01.T01:intron 35.0%
TCACACTTGCCAACTTATTT+GGG + Chr3:97011894-97011913 MsG0380017496.01.T01:intron 35.0%
TCATTGAACTCAAAGAAAGC+CGG - Chr3:97011158-97011177 None:intergenic 35.0%
TGAACTATATCCTTCCGAAT+AGG - Chr3:97007518-97007537 None:intergenic 35.0%
TGCTTAAGGGGTAATATGAA+TGG + Chr3:97009683-97009702 MsG0380017496.01.T01:intron 35.0%
TGTATTCAATTGTTGAACCG+TGG + Chr3:97007683-97007702 MsG0380017496.01.T01:intron 35.0%
TGTTACAGAAATGAGGACAT+GGG - Chr3:97012475-97012494 None:intergenic 35.0%
TTAATGAATGGCAACAGTTC+AGG + Chr3:97008622-97008641 MsG0380017496.01.T01:intron 35.0%
TTGCATGAGATAAAGCAGAA+AGG - Chr3:97006956-97006975 None:intergenic 35.0%
! ATAAGAACGAAGTAGCCTTT+TGG - Chr3:97006608-97006627 None:intergenic 35.0%
! CAAAACTAACTTGTAAGGTG+AGG - Chr3:97010486-97010505 None:intergenic 35.0%
! GCATTATGATTTGGAACCAT+TGG + Chr3:97007584-97007603 MsG0380017496.01.T01:intron 35.0%
! TTTTGATATGCCTATTCGGA+AGG + Chr3:97007505-97007524 MsG0380017496.01.T01:CDS 35.0%
!! AAAAAGAGGTACCTAACTAG+CGG - Chr3:97006386-97006405 None:intergenic 35.0%
!! AACTCATCTAGTCTTGATCA+TGG + Chr3:97007339-97007358 MsG0380017496.01.T01:intron 35.0%
!! ACTCATCTAGTCTTGATCAT+GGG + Chr3:97007340-97007359 MsG0380017496.01.T01:intron 35.0%
!! AGTAGAAGTAGAAAAGCGTT+GGG - Chr3:97006816-97006835 None:intergenic 35.0%
!! GTAGGTTGATTCTTCAGTTA+TGG + Chr3:97006570-97006589 MsG0380017496.01.T01:intron 35.0%
!! TAACTATGAGGATTTTGGAG+GGG - Chr3:97011826-97011845 None:intergenic 35.0%
!! TGCTTCTGCTCTAAAATTGA+AGG + Chr3:97007145-97007164 MsG0380017496.01.T01:intron 35.0%
!!! AAAGTTCTTGGTTTTATGCG+TGG - Chr3:97011422-97011441 None:intergenic 35.0%
!!! AAGTTCTTGGTTTTATGCGT+GGG - Chr3:97011421-97011440 None:intergenic 35.0%
!!! CTCATTGATTTTTGCCAACA+GGG + Chr3:97008420-97008439 MsG0380017496.01.T01:intron 35.0%
!!! TCTCATTGATTTTTGCCAAC+AGG + Chr3:97008419-97008438 MsG0380017496.01.T01:intron 35.0%
AAAACAAGTAACATAGCCGC+AGG - Chr3:97008400-97008419 None:intergenic 40.0%
AACCCAACTATACAAAACCG+GGG - Chr3:97010283-97010302 None:intergenic 40.0%
AAGACCCAAAAGTTAAACCC+TGG - Chr3:97007180-97007199 None:intergenic 40.0%
AAGTGTGAGAAGAACAATGG+AGG - Chr3:97011882-97011901 None:intergenic 40.0%
AATGAATGGCAACAGTTCAG+GGG + Chr3:97008624-97008643 MsG0380017496.01.T01:intron 40.0%
AATGTGGTTCATTATGCTGC+AGG + Chr3:97007404-97007423 MsG0380017496.01.T01:intron 40.0%
AATTGAAGGAATTTGTGGCC+AGG + Chr3:97007159-97007178 MsG0380017496.01.T01:intron 40.0%
ACAATGAGAAAATCAGAGGG+CGG - Chr3:97008107-97008126 None:intergenic 40.0%
ACGCTTCAGATGTGAATCTT+GGG + Chr3:97010387-97010406 MsG0380017496.01.T01:intron 40.0%
AGAAAGCCTTGGAACCAAAA+GGG + Chr3:97008486-97008505 MsG0380017496.01.T01:CDS 40.0%
AGATGAGTTGCCATGATAGA+TGG - Chr3:97007328-97007347 None:intergenic 40.0%
AGTGAAGTTGAACAGTGAAG+CGG - Chr3:97012047-97012066 None:intergenic 40.0%
ATAATCCTCACCTTACAAGC+CGG + Chr3:97009130-97009149 MsG0380017496.01.T01:intron 40.0%
ATCCTTGATATGTGACAGCA+AGG - Chr3:97008165-97008184 None:intergenic 40.0%
ATGTGGTTCATTATGCTGCA+GGG + Chr3:97007405-97007424 MsG0380017496.01.T01:intron 40.0%
ATTGAAGGAATTTGTGGCCA+GGG + Chr3:97007160-97007179 MsG0380017496.01.T01:intron 40.0%
CAACTTTCACAACGAAGACA+AGG + Chr3:97007457-97007476 MsG0380017496.01.T01:CDS 40.0%
CACACCCAAATAAATGGTTG+AGG + Chr3:97012397-97012416 MsG0380017496.01.T01:exon 40.0%
CGACAGTTCAGATCAAAAGT+TGG - Chr3:97010167-97010186 None:intergenic 40.0%
CTCAACCATTTATTTGGGTG+TGG - Chr3:97012399-97012418 None:intergenic 40.0%
CTCACACTTGCCAACTTATT+TGG + Chr3:97011893-97011912 MsG0380017496.01.T01:intron 40.0%
CTTGTCTTCGTTGTGAAAGT+TGG - Chr3:97007459-97007478 None:intergenic 40.0%
GAATGGGAGGAGGAATAAAA+TGG - Chr3:97008582-97008601 None:intergenic 40.0%
GAGGCGTGATCAACATATAA+TGG + Chr3:97008318-97008337 MsG0380017496.01.T01:intron 40.0%
GCTATCAAGTTTCCACAATC+AGG + Chr3:97010362-97010381 MsG0380017496.01.T01:intron 40.0%
GCTTCTAGTGTTTGAGGATT+TGG + Chr3:97011390-97011409 MsG0380017496.01.T01:intron 40.0%
GGAAACTCTCCCAAATAAGT+TGG - Chr3:97011906-97011925 None:intergenic 40.0%
GGCAATTTGAGCTTAACTAG+CGG - Chr3:97006459-97006478 None:intergenic 40.0%
GGTGTGGATTTATTGGAGAT+TGG - Chr3:97012383-97012402 None:intergenic 40.0%
GTGTTACAGAAATGAGGACA+TGG - Chr3:97012476-97012495 None:intergenic 40.0%
GTTACAGAAATGAGGACATG+GGG - Chr3:97012474-97012493 None:intergenic 40.0%
GTTCTTATCAATCCTTGGGA+CGG + Chr3:97006620-97006639 MsG0380017496.01.T01:CDS 40.0%
GTTTCAATAGCCTAAGGCTA+AGG - Chr3:97009393-97009412 None:intergenic 40.0%
TAATAGTTTACCAGCCAAGC+TGG + Chr3:97008941-97008960 MsG0380017496.01.T01:intron 40.0%
TAGCTTTCAGCTAATATGGG+AGG - Chr3:97009325-97009344 None:intergenic 40.0%
TCCTTGATATGTGACAGCAA+GGG - Chr3:97008164-97008183 None:intergenic 40.0%
TCTAGTGTTTGAGGATTTGG+AGG + Chr3:97011393-97011412 MsG0380017496.01.T01:intron 40.0%
TGAGCGTGATATAGGTATGA+AGG + Chr3:97006889-97006908 MsG0380017496.01.T01:intron 40.0%
TGGCTTCTTTCATCTCCAAA+AGG + Chr3:97006590-97006609 MsG0380017496.01.T01:CDS 40.0%
TGTTTGTGTACACTGATCTC+TGG + Chr3:97011351-97011370 MsG0380017496.01.T01:intron 40.0%
TTCCTCATCTTCTCCTCAAA+GGG + Chr3:97011922-97011941 MsG0380017496.01.T01:intron 40.0%
TTGTAAATGCCACCCAAAAC+CGG - Chr3:97009152-97009171 None:intergenic 40.0%
TTGTTGAATGAGTTCCCTGT+TGG - Chr3:97008437-97008456 None:intergenic 40.0%
TTTAGAAGAACAGCCTGCAT+CGG - Chr3:97010783-97010802 None:intergenic 40.0%
TTTCCTCATCTTCTCCTCAA+AGG + Chr3:97011921-97011940 MsG0380017496.01.T01:intron 40.0%
! ATGATTTGGAACCATTGGAC+TGG + Chr3:97007589-97007608 MsG0380017496.01.T01:intron 40.0%
! CAGTAGAAGTAGAAAAGCGT+TGG - Chr3:97006817-97006836 None:intergenic 40.0%
! GATTGTGGAAACTTGATAGC+AGG - Chr3:97010362-97010381 None:intergenic 40.0%
! GTCTTCACAGAATTGCTGTT+CGG + Chr3:97010840-97010859 MsG0380017496.01.T01:intron 40.0%
! TCATGGTGGTAATGCATAAC+TGG - Chr3:97009447-97009466 None:intergenic 40.0%
! TGAGTTTGAAAGCGTGACTT+CGG - Chr3:97008677-97008696 None:intergenic 40.0%
! TGATTTGGAACCATTGGACT+GGG + Chr3:97007590-97007609 MsG0380017496.01.T01:intron 40.0%
! TGTGAGAAAACCTTAGCCTT+AGG + Chr3:97009380-97009399 MsG0380017496.01.T01:intron 40.0%
!! CGGTTTTGTATAGTTGGGTT+AGG + Chr3:97010283-97010302 MsG0380017496.01.T01:intron 40.0%
!! TCGTTGTGAAAGTTGGTAAC+TGG - Chr3:97007452-97007471 None:intergenic 40.0%
!!! AAGGGCTTTATGGTTTTAGC+TGG + Chr3:97007476-97007495 MsG0380017496.01.T01:CDS 40.0%
!!! GGGGTCACTATTTTTGTTGT+TGG + Chr3:97010112-97010131 MsG0380017496.01.T01:intron 40.0%
!!! TAGTTCACCGTGTTGTTTTG+TGG + Chr3:97007531-97007550 MsG0380017496.01.T01:CDS 40.0%
!!! TCTTTTAGGGTATGTTGCGA+TGG + Chr3:97011641-97011660 MsG0380017496.01.T01:intron 40.0%
AAAAGGACGTGGTACTGTTC+TGG + Chr3:97009901-97009920 MsG0380017496.01.T01:intron 45.0%
AACTCAAAGAAAGCCGGCAA+AGG - Chr3:97011152-97011171 None:intergenic 45.0%
AATAAGAAGGTTCGGCGACT+GGG + Chr3:97008696-97008715 MsG0380017496.01.T01:intron 45.0%
AATTACCACCACTGAATGGG+AGG - Chr3:97008595-97008614 None:intergenic 45.0%
AATTGTCTGTGAGGATGGAG+TGG + Chr3:97007751-97007770 MsG0380017496.01.T01:intron 45.0%
ACATCCAGAGCTCCAAAGTA+TGG + Chr3:97010993-97011012 MsG0380017496.01.T01:intron 45.0%
AGGCAGGTAGAATTGTGTAG+AGG - Chr3:97008074-97008093 None:intergenic 45.0%
AGTTGAAGTGACACCCTTTG+AGG - Chr3:97011938-97011957 None:intergenic 45.0%
CAACGAAGACAAGGGCTTTA+TGG + Chr3:97007466-97007485 MsG0380017496.01.T01:CDS 45.0%
CACGCTTCAGATGTGAATCT+TGG + Chr3:97010386-97010405 MsG0380017496.01.T01:intron 45.0%
CATTTCTGCTCACCGTATCT+TGG + Chr3:97006690-97006709 MsG0380017496.01.T01:CDS 45.0%
CGAGTGAGTCTCCCAAAATA+TGG + Chr3:97010586-97010605 MsG0380017496.01.T01:intron 45.0%
CGTGTGGTTTCAATAGCCTA+AGG - Chr3:97009399-97009418 None:intergenic 45.0%
CTCTGGATGTGCATTTAGTG+GGG - Chr3:97010983-97011002 None:intergenic 45.0%
CTCTTAACACACACACACTC+AGG - Chr3:97010413-97010432 None:intergenic 45.0%
GACTGGGACATGTAATCCAA+CGG + Chr3:97007606-97007625 MsG0380017496.01.T01:intron 45.0%
GAGAAAGCCTTGGAACCAAA+AGG + Chr3:97008485-97008504 MsG0380017496.01.T01:CDS 45.0%
GATGCAGGCTGTTCTTCTAA+AGG + Chr3:97010782-97010801 MsG0380017496.01.T01:intron 45.0%
GATTACATGTCCCAGTCCAA+TGG - Chr3:97007603-97007622 None:intergenic 45.0%
GCAACATCTGAGCGTGATAT+AGG + Chr3:97006881-97006900 MsG0380017496.01.T01:CDS 45.0%
GCAGGTAGAATTGTGTAGAG+GGG - Chr3:97008072-97008091 None:intergenic 45.0%
GGCAAGTGTGAGAAGAACAA+TGG - Chr3:97011885-97011904 None:intergenic 45.0%
GGCAGGTAGAATTGTGTAGA+GGG - Chr3:97008073-97008092 None:intergenic 45.0%
GTGTGTTAAGAGTCCCAGAT+TGG + Chr3:97010421-97010440 MsG0380017496.01.T01:intron 45.0%
TAGCCTATCCTAGAACCGTT+AGG + Chr3:97010333-97010352 MsG0380017496.01.T01:intron 45.0%
TATTGTGTCTCTTGCCAGCT+TGG - Chr3:97008958-97008977 None:intergenic 45.0%
TCAAGTGAGCAAGAGAAGTG+AGG - Chr3:97008233-97008252 None:intergenic 45.0%
TCGGTAGGGAGAATTGAAGT+AGG + Chr3:97010859-97010878 MsG0380017496.01.T01:intron 45.0%
TCTGGATGTGCATTTAGTGG+GGG - Chr3:97010982-97011001 None:intergenic 45.0%
TGAGTTGCCATGATAGATGG+TGG - Chr3:97007325-97007344 None:intergenic 45.0%
TTAGGGTATGTTGCGATGGA+GGG + Chr3:97011645-97011664 MsG0380017496.01.T01:intron 45.0%
TTATTCCTCCTCCCATTCAG+TGG + Chr3:97008584-97008603 MsG0380017496.01.T01:intron 45.0%
! AAGAACAATGGAGGCTCTAG+TGG - Chr3:97011873-97011892 None:intergenic 45.0%
! AGAACAATGGAGGCTCTAGT+GGG - Chr3:97011872-97011891 None:intergenic 45.0%
! AGAATTGTGTAGAGGGGCAT+CGG - Chr3:97008066-97008085 None:intergenic 45.0%
! AGATGTTGCGAGAGGCTTTT+TGG - Chr3:97006870-97006889 None:intergenic 45.0%
! AGTTTGAAAGCGTGACTTCG+GGG - Chr3:97008675-97008694 None:intergenic 45.0%
! CACAGAATTGCTGTTCGGTA+GGG + Chr3:97010845-97010864 MsG0380017496.01.T01:intron 45.0%
! GAGTTTGAAAGCGTGACTTC+GGG - Chr3:97008676-97008695 None:intergenic 45.0%
! GCTCTGGATGTGCATTTAGT+GGG - Chr3:97010984-97011003 None:intergenic 45.0%
! TATGTTGCGATGGAGGGTTT+TGG + Chr3:97011651-97011670 MsG0380017496.01.T01:intron 45.0%
! TCACAGAATTGCTGTTCGGT+AGG + Chr3:97010844-97010863 MsG0380017496.01.T01:intron 45.0%
! TCCCTTGCTGTCACATATCA+AGG + Chr3:97008160-97008179 MsG0380017496.01.T01:intron 45.0%
! TGTGGAAACTTGATAGCAGG+TGG - Chr3:97010359-97010378 None:intergenic 45.0%
! TTGCCATGATAGATGGTGGT+AGG - Chr3:97007321-97007340 None:intergenic 45.0%
! TTTAGGGTATGTTGCGATGG+AGG + Chr3:97011644-97011663 MsG0380017496.01.T01:intron 45.0%
!! AAAGCGTTGGGTGATTGATC+CGG - Chr3:97006804-97006823 None:intergenic 45.0%
!! AGCTCTGGATGTGCATTTAG+TGG - Chr3:97010985-97011004 None:intergenic 45.0%
!! CACCCCGGTTTTGTATAGTT+GGG + Chr3:97010278-97010297 MsG0380017496.01.T01:intron 45.0%
!! GTGGCCAGGGTTTAACTTTT+GGG + Chr3:97007173-97007192 MsG0380017496.01.T01:intron 45.0%
!! GTGTCACTTCAACTTTCTCC+CGG + Chr3:97011944-97011963 MsG0380017496.01.T01:intron 45.0%
!! TCACCTTACAAGCCGGTTTT+GGG + Chr3:97009137-97009156 MsG0380017496.01.T01:intron 45.0%
!! TGTGGCCAGGGTTTAACTTT+TGG + Chr3:97007172-97007191 MsG0380017496.01.T01:intron 45.0%
!! TTGACCATACTTTGGAGCTC+TGG - Chr3:97011000-97011019 None:intergenic 45.0%
!! ATATAATAATAATATATCAA+TGG + Chr3:97010189-97010208 MsG0380017496.01.T01:intron 5.0%
!! ATTTAAATAAATAAAACAAA+CGG - Chr3:97006776-97006795 None:intergenic 5.0%
!! TAATTAATAAATTTAATGAA+TGG + Chr3:97008610-97008629 MsG0380017496.01.T01:intron 5.0%
!! TAATTGTAAATATTAAAAAA+AGG + Chr3:97009884-97009903 MsG0380017496.01.T01:intron 5.0%
AAAAGGGAACTGGTCGAGCA+AGG + Chr3:97008502-97008521 MsG0380017496.01.T01:CDS 50.0%
AAAGGACAGCAGATGCAGTG+CGG - Chr3:97011134-97011153 None:intergenic 50.0%
ACAGCAAGGGAAGAAGAGTG+AGG - Chr3:97008151-97008170 None:intergenic 50.0%
ATTAGTGAGGTCAGTGGGAC+TGG + Chr3:97008462-97008481 MsG0380017496.01.T01:CDS 50.0%
CAATAAGAAGGTTCGGCGAC+TGG + Chr3:97008695-97008714 MsG0380017496.01.T01:intron 50.0%
CACGCCTCCACTCTTCAATT+TGG + Chr3:97009415-97009434 MsG0380017496.01.T01:intron 50.0%
CACGCTGCCACAAAACAACA+CGG - Chr3:97007541-97007560 None:intergenic 50.0%
CCAACTATACAAAACCGGGG+TGG - Chr3:97010280-97010299 None:intergenic 50.0%
CCATATAACCCAGCAGCACT+GGG - Chr3:97006661-97006680 None:intergenic 50.0%
CCTTGGAACCAAAAGGGAAC+TGG + Chr3:97008492-97008511 MsG0380017496.01.T01:CDS 50.0%
CTCTTCTCTTGCCGCTAGTT+AGG + Chr3:97006372-97006391 MsG0380017496.01.T01:five_prime_UTR 50.0%
CTGCCTACCACCATCTATCA+TGG + Chr3:97007315-97007334 MsG0380017496.01.T01:intron 50.0%
CTGGCAATTGTCTGTGAGGA+TGG + Chr3:97007746-97007765 MsG0380017496.01.T01:intron 50.0%
GGAGGAGGAATAAAATGGGC+TGG - Chr3:97008577-97008596 None:intergenic 50.0%
TGCTCTGGCAATTGTCTGTG+AGG + Chr3:97007742-97007761 MsG0380017496.01.T01:intron 50.0%
TGTGAGGATGGAGTGGAGTA+GGG + Chr3:97007758-97007777 MsG0380017496.01.T01:intron 50.0%
TTAGTGAGGTCAGTGGGACT+GGG + Chr3:97008463-97008482 MsG0380017496.01.T01:CDS 50.0%
TTGAACAGTGAAGCGGCGAT+AGG - Chr3:97012040-97012059 None:intergenic 50.0%
TTTGATTCACCCAGTGCTGC+TGG + Chr3:97006649-97006668 MsG0380017496.01.T01:CDS 50.0%
! AATTGAAGAGTGGAGGCGTG+TGG - Chr3:97009415-97009434 None:intergenic 50.0%
! CACCCTTTGAGGAGAAGATG+AGG - Chr3:97011927-97011946 None:intergenic 50.0%
! CAGTGCTGCTGGGTTATATG+GGG + Chr3:97006660-97006679 MsG0380017496.01.T01:CDS 50.0%
! CCAGTGCTGCTGGGTTATAT+GGG + Chr3:97006659-97006678 MsG0380017496.01.T01:CDS 50.0%
! CTTGATAGCAGGTGGCCTAA+CGG - Chr3:97010351-97010370 None:intergenic 50.0%
! TCTGAAGCGTGACCTGATTG+TGG - Chr3:97010377-97010396 None:intergenic 50.0%
! TTGATTCACCCAGTGCTGCT+GGG + Chr3:97006650-97006669 MsG0380017496.01.T01:CDS 50.0%
! TTGCTCGACCAGTTCCCTTT+TGG - Chr3:97008503-97008522 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr3:97009138-97009157 None:intergenic 50.0%
!! CCACCCCGGTTTTGTATAGT+TGG + Chr3:97010277-97010296 MsG0380017496.01.T01:intron 50.0%
!! CTCACCTTACAAGCCGGTTT+TGG + Chr3:97009136-97009155 MsG0380017496.01.T01:intron 50.0%
!! GAATTGTGTAGAGGGGCATC+GGG - Chr3:97008065-97008084 None:intergenic 50.0%
!! TGGCCTAACGGTTCTAGGAT+AGG - Chr3:97010339-97010358 None:intergenic 50.0%
!!! CCAGTTCCCTTTTGGTTCCA+AGG - Chr3:97008495-97008514 None:intergenic 50.0%
!!! TTGCGATGGAGGGTTTTGGA+GGG + Chr3:97011655-97011674 MsG0380017496.01.T01:intron 50.0%
AAAGCGTGACTTCGGGGCTT+AGG - Chr3:97008669-97008688 None:intergenic 55.0%
AAGGACAGCAGATGCAGTGC+GGG - Chr3:97011133-97011152 None:intergenic 55.0%
AGCTCGTGCAGCAGAAGGAA+AGG + Chr3:97008737-97008756 MsG0380017496.01.T01:intron 55.0%
AGGACGTGGTACTGTTCTGG+TGG + Chr3:97009904-97009923 MsG0380017496.01.T01:intron 55.0%
ATGGAGTGGAGTAGGGGGTT+GGG + Chr3:97007765-97007784 MsG0380017496.01.T01:intron 55.0%
CAAGGCATGGGTCATTGCGT+GGG + Chr3:97008520-97008539 MsG0380017496.01.T01:CDS 55.0%
CCCATATAACCCAGCAGCAC+TGG - Chr3:97006662-97006681 None:intergenic 55.0%
CTGCATCTGCTGTCCTTTGC+CGG + Chr3:97011136-97011155 MsG0380017496.01.T01:intron 55.0%
CTGTGAGGATGGAGTGGAGT+AGG + Chr3:97007757-97007776 MsG0380017496.01.T01:intron 55.0%
GAACTGGTCGAGCAAGGCAT+GGG + Chr3:97008508-97008527 MsG0380017496.01.T01:CDS 55.0%
GAATGGCAACAGTTCAGGGG+TGG + Chr3:97008627-97008646 MsG0380017496.01.T01:intron 55.0%
GTGAGGATGGAGTGGAGTAG+GGG + Chr3:97007759-97007778 MsG0380017496.01.T01:intron 55.0%
GTGCATGGTAAATGCCACCC+CGG + Chr3:97010263-97010282 MsG0380017496.01.T01:intron 55.0%
TACCACCACTGAATGGGAGG+AGG - Chr3:97008592-97008611 None:intergenic 55.0%
TCACGCTCAGATGTTGCGAG+AGG - Chr3:97006878-97006897 None:intergenic 55.0%
TGAGGATGGAGTGGAGTAGG+GGG + Chr3:97007760-97007779 MsG0380017496.01.T01:intron 55.0%
TTATGCTGCAGGGCTCTGTC+AGG + Chr3:97007415-97007434 MsG0380017496.01.T01:intron 55.0%
TTCCTCCTCCCATTCAGTGG+TGG + Chr3:97008587-97008606 MsG0380017496.01.T01:intron 55.0%
! CCCAGTGCTGCTGGGTTATA+TGG + Chr3:97006658-97006677 MsG0380017496.01.T01:CDS 55.0%
! GGAGGCTCTAGTGGGAAAAG+TGG - Chr3:97011864-97011883 None:intergenic 55.0%
!! CCACCCAAAACCGGCTTGTA+AGG - Chr3:97009143-97009162 None:intergenic 55.0%
!! GTTGCGATGGAGGGTTTTGG+AGG + Chr3:97011654-97011673 MsG0380017496.01.T01:intron 55.0%
!!! ATGGAGGGTTTTGGAGGGGA+GGG + Chr3:97011660-97011679 MsG0380017496.01.T01:intron 55.0%
!!! CCTTACAAGCCGGTTTTGGG+TGG + Chr3:97009140-97009159 MsG0380017496.01.T01:intron 55.0%
!!! TGCGATGGAGGGTTTTGGAG+GGG + Chr3:97011656-97011675 MsG0380017496.01.T01:intron 55.0%
AGGGGTGGTGAAGCGAAGCA+TGG + Chr3:97008642-97008661 MsG0380017496.01.T01:intron 60.0%
ATCAAAGCAGCGCCGTCCCA+AGG - Chr3:97006635-97006654 None:intergenic 60.0%
CAGAGGGCGGAAAAGACGCA+AGG - Chr3:97008094-97008113 None:intergenic 60.0%
CTGTCAGCTCGTGCAGCAGA+AGG + Chr3:97008732-97008751 MsG0380017496.01.T01:intron 60.0%
GATGGAGTGGAGTAGGGGGT+TGG + Chr3:97007764-97007783 MsG0380017496.01.T01:intron 60.0%
GCAAGGCATGGGTCATTGCG+TGG + Chr3:97008519-97008538 MsG0380017496.01.T01:CDS 60.0%
GCAGCGTGCAAAACGCCAAC+AGG + Chr3:97007553-97007572 MsG0380017496.01.T01:CDS 60.0%
GCAGGTGGCCTAACGGTTCT+AGG - Chr3:97010344-97010363 None:intergenic 60.0%
GGAACTGGTCGAGCAAGGCA+TGG + Chr3:97008507-97008526 MsG0380017496.01.T01:CDS 60.0%
GTGGGACTGGGAGAAAGCCT+TGG + Chr3:97008475-97008494 MsG0380017496.01.T01:CDS 60.0%
GTGTCTCTTGCCAGCTTGGC+TGG - Chr3:97008954-97008973 None:intergenic 60.0%
!! GTGTAGAGGGGCATCGGGTA+GGG - Chr3:97008060-97008079 None:intergenic 60.0%
!! TGTGTAGAGGGGCATCGGGT+AGG - Chr3:97008061-97008080 None:intergenic 60.0%
!!! GATGGAGGGTTTTGGAGGGG+AGG + Chr3:97011659-97011678 MsG0380017496.01.T01:intron 60.0%
GGGCGGAAAAGACGCAAGGC+AGG - Chr3:97008090-97008109 None:intergenic 65.0%
TGGGTCATTGCGTGGGCCTC+AGG + Chr3:97008527-97008546 MsG0380017496.01.T01:CDS 65.0%
!! AGAGGGGCATCGGGTAGGGT+TGG - Chr3:97008056-97008075 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97006323 97012647 97006323 ID=MsG0380017496.01;Name=MsG0380017496.01
Chr3 mRNA 97006323 97012647 97006323 ID=MsG0380017496.01.T01;Parent=MsG0380017496.01;Name=MsG0380017496.01.T01;_AED=0.46;_eAED=0.46;_QI=86|0.8|1|1|0.6|0.66|6|238|199
Chr3 exon 97006323 97006393 97006323 ID=MsG0380017496.01.T01:exon:31790;Parent=MsG0380017496.01.T01
Chr3 exon 97006574 97006711 97006574 ID=MsG0380017496.01.T01:exon:31791;Parent=MsG0380017496.01.T01
Chr3 exon 97006800 97006902 97006800 ID=MsG0380017496.01.T01:exon:31792;Parent=MsG0380017496.01.T01
Chr3 exon 97007426 97007574 97007426 ID=MsG0380017496.01.T01:exon:31793;Parent=MsG0380017496.01.T01
Chr3 exon 97008441 97008548 97008441 ID=MsG0380017496.01.T01:exon:31794;Parent=MsG0380017496.01.T01
Chr3 exon 97012293 97012647 97012293 ID=MsG0380017496.01.T01:exon:31795;Parent=MsG0380017496.01.T01
Chr3 five_prime_UTR 97006323 97006393 97006323 ID=MsG0380017496.01.T01:five_prime_utr;Parent=MsG0380017496.01.T01
Chr3 five_prime_UTR 97006574 97006588 97006574 ID=MsG0380017496.01.T01:five_prime_utr;Parent=MsG0380017496.01.T01
Chr3 CDS 97006589 97006711 97006589 ID=MsG0380017496.01.T01:cds;Parent=MsG0380017496.01.T01
Chr3 CDS 97006800 97006902 97006800 ID=MsG0380017496.01.T01:cds;Parent=MsG0380017496.01.T01
Chr3 CDS 97007426 97007574 97007426 ID=MsG0380017496.01.T01:cds;Parent=MsG0380017496.01.T01
Chr3 CDS 97008441 97008548 97008441 ID=MsG0380017496.01.T01:cds;Parent=MsG0380017496.01.T01
Chr3 CDS 97012293 97012409 97012293 ID=MsG0380017496.01.T01:cds;Parent=MsG0380017496.01.T01
Chr3 three_prime_UTR 97012410 97012647 97012410 ID=MsG0380017496.01.T01:three_prime_utr;Parent=MsG0380017496.01.T01
Gene Sequence

>MsG0380017496.01.T01

ATGGCTTCTTTCATCTCCAAAAGGCTACTTCGTTCTTATCAATCCTTGGGACGGCGCTGCTTTGATTCACCCAGTGCTGCTGGGTTATATGGGGAGCGACTCATTTCTGCTCACCGTATCTTGACCGGATCAATCACCCAACGCTTTTCTACTTCTACTGATGAAGCTGCATTTCCATCTGACTTATTGTCCAAAAAGCCTCTCGCAACATCTGAGCGTGATATAGGGCTCTGTCAGGATCTTTTAATTCCAGTTACCAACTTTCACAACGAAGACAAGGGCTTTATGGTTTTAGCTGGAGATGTTTTTGATATGCCTATTCGGAAGGATATAGTTCACCGTGTTGTTTTGTGGCAGCGTGCAAAACGCCAACAGGGAACTCATTCAACAAAAACTATTAGTGAGGTCAGTGGGACTGGGAGAAAGCCTTGGAACCAAAAGGGAACTGGTCGAGCAAGGCATGGGTCATTGCGTGGGCCTCAGGGCTTAAATGTCTACAGTATTTTGTTGCATGATACTTTGGTGATGTCCAAAGATGCTGTGAACAGAATTGTTGAGCGTATGCACACTCCAATCTCCAATAAATCCACACCCAAATAA
Protein sequence

>MsG0380017496.01.T01

MASFISKRLLRSYQSLGRRCFDSPSAAGLYGERLISAHRILTGSITQRFSTSTDEAAFPSDLLSKKPLATSERDIGLCQDLLIPVTNFHNEDKGFMVLAGDVFDMPIRKDIVHRVVLWQRAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGPQGLNVYSILLHDTLVMSKDAVNRIVERMHTPISNKSTPK*