AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014507.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014507.01.T01 MTR_3g058620 80.672 238 7 2 21 258 21 219 1.50e-130 368
MsG0380014507.01.T01 MTR_5g013300 57.692 104 44 0 151 254 119 222 3.50e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014507.01.T01 AT5G11750 73.377 154 33 3 107 258 80 227 2.61e-73 223
MsG0380014507.01.T01 AT4G11630 72.848 151 33 2 108 258 81 223 1.94e-72 221
MsG0380014507.01.T01 AT5G11750 65.896 173 37 4 107 258 80 251 9.85e-71 218
MsG0380014507.01.T01 AT1G24240 71.154 156 37 2 103 258 73 220 1.21e-63 199
MsG0380014507.01.T01 AT4G17560 58.879 107 44 0 151 257 115 221 4.86e-36 128
MsG0380014507.01.T01 AT5G47190 58.654 104 43 0 151 254 119 222 1.24e-35 127
MsG0380014507.01.T01 AT1G24240 60.759 79 23 2 103 181 73 143 1.46e-21 88.6

Find 75 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCGTGTTTCTATTATAAA+AGG 0.194759 3:-55859429 MsG0380014507.01.T01:CDS
TTGATGCGGGGAGGCAATTC+AGG 0.268789 3:+55859794 None:intergenic
TGTGGACAGGTCAGGACTTC+AGG 0.275666 3:-55860392 MsG0380014507.01.T01:CDS
CTTTCGATCATATCGTGTTT+TGG 0.276614 3:-55858501 MsG0380014507.01.T01:three_prime_UTR
GGGTCTGGTATTGCGGATAT+TGG 0.279683 3:-55860355 MsG0380014507.01.T01:CDS
TTGTCAGGCGTCCACAGTTC+TGG 0.310894 3:-55860419 MsG0380014507.01.T01:intron
ATCCCTCAGGTAGTAGAGTT+TGG 0.318153 3:+55858712 None:intergenic
GCGGATATTGGGTTGATTAT+TGG 0.320150 3:-55860343 MsG0380014507.01.T01:CDS
ACCTTTATCTCCTTTATGTT+AGG 0.356884 3:+55858761 None:intergenic
GGTCTGGTATTGCGGATATT+GGG 0.358510 3:-55860354 MsG0380014507.01.T01:CDS
ACCTAACATAAAGGAGATAA+AGG 0.358575 3:-55858762 MsG0380014507.01.T01:CDS
CGGGGAGGCAATTCAGGTTC+TGG 0.369112 3:+55859800 None:intergenic
ACACTACATTCAGACTTAGA+AGG 0.398714 3:-55859374 MsG0380014507.01.T01:CDS
GAAGGATGGTAGCTGGGGTT+GGG 0.398853 3:-55859356 MsG0380014507.01.T01:CDS
CTTCAGGTGCTAAGCAGAGC+TGG 0.399267 3:-55860376 MsG0380014507.01.T01:CDS
CTGGTTTGTGTGGACAGGTC+AGG 0.424339 3:-55860400 MsG0380014507.01.T01:CDS
TTGTCCCTCATTTCCGAAGC+AGG 0.430695 3:-55859874 MsG0380014507.01.T01:CDS
ATATAACCAGGCTTTATATC+AGG 0.433635 3:+55859591 None:intergenic
AGAAGGATGGTAGCTGGGGT+TGG 0.434672 3:-55859357 MsG0380014507.01.T01:CDS
ATGCTGAAATGAAGGCAATC+TGG 0.441606 3:+55859907 None:intergenic
CGGTAGACATAAACCTGCTT+CGG 0.445201 3:+55859861 None:intergenic
TAATCTCTTAAATTTGATGC+GGG 0.446449 3:+55859781 None:intergenic
AGAATGCATGTGAATACATA+TGG 0.454243 3:+55858602 None:intergenic
CAGTTCTGGTTTGTGTGGAC+AGG 0.459428 3:-55860405 MsG0380014507.01.T01:CDS
GACTTAGAAGGATGGTAGCT+GGG 0.461287 3:-55859362 MsG0380014507.01.T01:CDS
GGCGTGTTTCTATTATAAAA+GGG 0.465947 3:-55859428 MsG0380014507.01.T01:CDS
TTACGGTGGAGAAAGAGATT+TGG 0.468649 3:+55862528 None:intergenic
ATCTCTCACTCGCTCTTCAT+CGG 0.487779 3:-55862576 MsG0380014507.01.T01:CDS
AGACTTAGAAGGATGGTAGC+TGG 0.494744 3:-55859363 MsG0380014507.01.T01:CDS
AGACAAAGAAGCAGTGGAGG+AGG 0.496174 3:-55859634 MsG0380014507.01.T01:CDS
GTGCTAAGCAGAGCTGGGTC+TGG 0.496723 3:-55860370 MsG0380014507.01.T01:CDS
CGGTGGAGAAAGAGATTTGG+CGG 0.501530 3:+55862531 None:intergenic
ATAAACCTGCTTCGGAAATG+AGG 0.502963 3:+55859869 None:intergenic
TAAAAGGGATTGTTATTGCA+AGG 0.505129 3:-55859413 MsG0380014507.01.T01:CDS
GTATCCTCTAGAGATGAGTC+TGG 0.510292 3:-55859941 MsG0380014507.01.T01:CDS
GATATTGGGTTGATTATTGG+TGG 0.510439 3:-55860340 MsG0380014507.01.T01:CDS
AACCGCGAGGCACATTATGC+AGG 0.510916 3:-55859753 MsG0380014507.01.T01:CDS
ACAGAACCATGCTGAAATGA+AGG 0.517294 3:+55859899 None:intergenic
CAGGTATTCACCTAACATAA+AGG 0.524817 3:-55858771 MsG0380014507.01.T01:CDS
GACACTAGTCTTCAGCCTGT+TGG 0.531116 3:-55858663 MsG0380014507.01.T01:three_prime_UTR
TCTAGAGATGAGTCTGGTAA+TGG 0.532054 3:-55859935 MsG0380014507.01.T01:CDS
CTAATCTCTTAAATTTGATG+CGG 0.540456 3:+55859780 None:intergenic
TCATATATCATAGGAAGTAC+CGG 0.546725 3:-55859460 MsG0380014507.01.T01:intron
GAGGTACCTGATATAAAGCC+TGG 0.550742 3:-55859597 MsG0380014507.01.T01:CDS
TCCTCTATACGAAACAGCCA+TGG 0.552703 3:-55862633 None:intergenic
GAAACACGCCTCTTGTTCTC+CGG 0.554578 3:+55859441 None:intergenic
CAGAGCTGGGTCTGGTATTG+CGG 0.555197 3:-55860362 MsG0380014507.01.T01:CDS
TTCAGGTGCTAAGCAGAGCT+GGG 0.555663 3:-55860375 MsG0380014507.01.T01:CDS
AGGCAATTCAGGTTCTGGTA+AGG 0.561434 3:+55859805 None:intergenic
CAAAACACGATATGATCGAA+AGG 0.561824 3:+55858502 None:intergenic
TTTAGACAAAGAAGCAGTGG+AGG 0.569964 3:-55859637 MsG0380014507.01.T01:CDS
GTTATTGCAAGGCGTAATTG+TGG 0.573207 3:-55859402 MsG0380014507.01.T01:CDS
AAAACACGATATGATCGAAA+GGG 0.580980 3:+55858503 None:intergenic
GAGATTTGGCGGAGATACGT+CGG 0.584699 3:+55862542 None:intergenic
GAAGAGTCTTCGTGAAGCCA+TGG 0.589431 3:+55862616 None:intergenic
TAAACCTGCTTCGGAAATGA+GGG 0.601675 3:+55859870 None:intergenic
CTCTTAAATTTGATGCGGGG+AGG 0.603126 3:+55859785 None:intergenic
AGGAAGTACCGGAGAACAAG+AGG 0.604082 3:-55859449 MsG0380014507.01.T01:CDS
GGAGGTGAAAGAACAGAGAG+AGG 0.615909 3:-55859616 MsG0380014507.01.T01:CDS
GTCCACAGTTCTGGTTTGTG+TGG 0.617070 3:-55860410 MsG0380014507.01.T01:CDS
TTGAGCTGCACAATATAACC+AGG 0.624977 3:+55859579 None:intergenic
AGAATCAACAGAATTTGTCT+CGG 0.631893 3:+55859841 None:intergenic
TACATTCAGACTTAGAAGGA+TGG 0.634854 3:-55859370 MsG0380014507.01.T01:CDS
GAGCCAAACTCTACTACCTG+AGG 0.635973 3:-55858715 MsG0380014507.01.T01:CDS
AGATTGCCTTCATTTCAGCA+TGG 0.636188 3:-55859905 MsG0380014507.01.T01:CDS
AAGAGCGAGTGAGAGATGAA+CGG 0.636322 3:+55862582 None:intergenic
ACTTAGAAGGATGGTAGCTG+GGG 0.639779 3:-55859361 MsG0380014507.01.T01:CDS
CTAGAGGATACATTCGTCTG+AGG 0.640083 3:+55859953 None:intergenic
AATCTCTTAAATTTGATGCG+GGG 0.640370 3:+55859782 None:intergenic
ATTACCAGACTCATCTCTAG+AGG 0.648515 3:+55859937 None:intergenic
GTCCACACAAACCAGAACTG+TGG 0.675331 3:+55860408 None:intergenic
AGCCAAACTCTACTACCTGA+GGG 0.676552 3:-55858714 MsG0380014507.01.T01:CDS
TTATATTGTGCAGCTCAAAG+TGG 0.710180 3:-55859574 MsG0380014507.01.T01:intron
TGCCTGCATAATGTGCCTCG+CGG 0.710446 3:+55859751 None:intergenic
AGAGATTAGATAAAACCGCG+AGG 0.761190 3:-55859766 MsG0380014507.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATGTAATAATTTTAGA+TGG + Chr3:55862522-55862541 None:intergenic 10.0%
!!! TTTTACATAAACTTAAAATA+AGG + Chr3:55858856-55858875 None:intergenic 10.0%
!! AACATTAAATAAACAGAAAT+GGG + Chr3:55860417-55860436 None:intergenic 15.0%
!! TAACATTAAATAAACAGAAA+TGG + Chr3:55860418-55860437 None:intergenic 15.0%
!! TTATTTGAATTATTGTTATG+AGG - Chr3:55862010-55862029 MsG0380014507.01.T01:intron 15.0%
!!! ATTCTTTTTATTCTCTTTTT+TGG + Chr3:55861954-55861973 None:intergenic 15.0%
!!! ATTTTTTTCATATAGACTAT+GGG + Chr3:55859055-55859074 None:intergenic 15.0%
!!! CTAGATTCTTTATTTTAATA+TGG - Chr3:55862489-55862508 MsG0380014507.01.T01:intron 15.0%
!!! TAATTTTAGTTTACTTTCAT+AGG - Chr3:55860195-55860214 MsG0380014507.01.T01:intron 15.0%
!!! TATTTTTTTCATATAGACTA+TGG + Chr3:55859056-55859075 None:intergenic 15.0%
!!! TGTGTTTTGTTTTAAATAAA+GGG - Chr3:55861334-55861353 MsG0380014507.01.T01:intron 15.0%
!!! TTCTTTTTATTCTCTTTTTT+GGG + Chr3:55861953-55861972 None:intergenic 15.0%
!! AAGCACAATTAACTTTAAAT+TGG + Chr3:55862213-55862232 None:intergenic 20.0%
!! AAGCAGATATACATAAATTA+TGG + Chr3:55861755-55861774 None:intergenic 20.0%
!! ACATAATTATAAGCAAAAGT+AGG - Chr3:55859879-55859898 MsG0380014507.01.T01:CDS 20.0%
!! AGATATACATAAATTATGGA+AGG + Chr3:55861751-55861770 None:intergenic 20.0%
!! ATTTCATAGCATATACAAAA+GGG + Chr3:55860064-55860083 None:intergenic 20.0%
!! GTATAAGCTATAGAAAAATT+GGG - Chr3:55858657-55858676 MsG0380014507.01.T01:three_prime_UTR 20.0%
!! TAATCATTTGTGAAAATTGT+TGG - Chr3:55861369-55861388 MsG0380014507.01.T01:intron 20.0%
!! TCAAAGAAATTTCATGTATT+TGG + Chr3:55859941-55859960 None:intergenic 20.0%
!! TGTATAAGCTATAGAAAAAT+TGG - Chr3:55858656-55858675 MsG0380014507.01.T01:three_prime_UTR 20.0%
!! TTAATTGTGGGATTATTTAA+TGG - Chr3:55860285-55860304 MsG0380014507.01.T01:intron 20.0%
!!! ACTTACTTTTGCTTATATTA+AGG - Chr3:55859960-55859979 MsG0380014507.01.T01:CDS 20.0%
!!! AGAATATGATGATGAATTTA+TGG - Chr3:55861984-55862003 MsG0380014507.01.T01:intron 20.0%
!!! CTGTGTTTTGTTTTAAATAA+AGG - Chr3:55861333-55861352 MsG0380014507.01.T01:intron 20.0%
!!! GTATTTTCTAAAGTAACATA+AGG + Chr3:55862111-55862130 None:intergenic 20.0%
!!! TAAAATCTTGCAATTTTTCA+TGG - Chr3:55860378-55860397 MsG0380014507.01.T01:CDS 20.0%
!!! TAGTGTCAGTTTTTATTTTA+GGG + Chr3:55862375-55862394 None:intergenic 20.0%
!!! TTAATAATTTTGTTATACGC+AGG - Chr3:55862422-55862441 MsG0380014507.01.T01:intron 20.0%
! AAAAAGTTGTTTATCCAAGT+TGG - Chr3:55861015-55861034 MsG0380014507.01.T01:intron 25.0%
! AAAAGTTGTTTATCCAAGTT+GGG - Chr3:55861016-55861035 MsG0380014507.01.T01:intron 25.0%
! ACTGTTATGTCATATATCAT+AGG - Chr3:55861582-55861601 MsG0380014507.01.T01:intron 25.0%
! ATATAATTTATGCATGGTAG+TGG - Chr3:55859505-55859524 MsG0380014507.01.T01:intron 25.0%
! CTAATCTCTTAAATTTGATG+CGG + Chr3:55861274-55861293 None:intergenic 25.0%
! CTTCAAAAAAATTCAGAGTT+GGG + Chr3:55862630-55862649 None:intergenic 25.0%
! GATTTCATAGCATATACAAA+AGG + Chr3:55860065-55860084 None:intergenic 25.0%
! GGAGTATAATTAAAGGAATT+AGG - Chr3:55859391-55859410 MsG0380014507.01.T01:CDS 25.0%
! GTATCATGTTACAAATTGTA+AGG - Chr3:55859461-55859480 MsG0380014507.01.T01:intron 25.0%
! TAATAAAACAGCCTAATAAC+CGG + Chr3:55860815-55860834 None:intergenic 25.0%
! TAATCTCTTAAATTTGATGC+GGG + Chr3:55861273-55861292 None:intergenic 25.0%
! TATAGCTTATATGAAAGAGT+AGG - Chr3:55860246-55860265 MsG0380014507.01.T01:intron 25.0%
! TATTATTGAGGCAATTGATT+TGG - Chr3:55859570-55859589 MsG0380014507.01.T01:intron 25.0%
! TCAAAGAAAGGTAATGTATT+TGG - Chr3:55859902-55859921 MsG0380014507.01.T01:CDS 25.0%
! TCAAATATTCAATTGCACAA+TGG - Chr3:55860490-55860509 MsG0380014507.01.T01:intron 25.0%
! TGAAAACCATTTAAACACTT+AGG + Chr3:55859196-55859215 None:intergenic 25.0%
! TTAATCACAAAAATTCCAAC+AGG + Chr3:55862406-55862425 None:intergenic 25.0%
! TTGTATATGCTATGAAATCT+GGG - Chr3:55860066-55860085 MsG0380014507.01.T01:intron 25.0%
! TTTGTATATGCTATGAAATC+TGG - Chr3:55860065-55860084 MsG0380014507.01.T01:intron 25.0%
!! AACAATCTAAAGTGATTTCT+TGG - Chr3:55860439-55860458 MsG0380014507.01.T01:intron 25.0%
!! CAATTTTTCATGGTAAAAAG+TGG - Chr3:55860388-55860407 MsG0380014507.01.T01:CDS 25.0%
!! CTTCTTTGTCTAAAATCTAA+AGG + Chr3:55861408-55861427 None:intergenic 25.0%
!! TTTTCAATCCAATATAGTTG+AGG - Chr3:55859210-55859229 MsG0380014507.01.T01:intron 25.0%
!!! AATGTATTTGGTTCAAGTTT+TGG - Chr3:55859914-55859933 MsG0380014507.01.T01:CDS 25.0%
!!! ATATTCATGCTATTTTGAAC+TGG - Chr3:55861835-55861854 MsG0380014507.01.T01:intron 25.0%
!!! CTAGTGTCAGTTTTTATTTT+AGG + Chr3:55862376-55862395 None:intergenic 25.0%
!!! GATGTTTTTATTGAAGAAAG+AGG - Chr3:55859167-55859186 MsG0380014507.01.T01:intron 25.0%
!!! GTTTTATTAGTTGAGCAATT+AGG - Chr3:55860826-55860845 MsG0380014507.01.T01:intron 25.0%
!!! TATCTTTTGACTTTTAAGGA+GGG - Chr3:55861886-55861905 MsG0380014507.01.T01:intron 25.0%
!!! TCTCTATCTTTTGACTTTTA+AGG - Chr3:55861882-55861901 MsG0380014507.01.T01:intron 25.0%
!!! TTCTTTTGTCTTGTTTTTGT+TGG - Chr3:55860959-55860978 MsG0380014507.01.T01:intron 25.0%
AAAACACGATATGATCGAAA+GGG + Chr3:55862551-55862570 None:intergenic 30.0%
AAAATAAGGTCAATCGAAAC+AGG + Chr3:55858842-55858861 None:intergenic 30.0%
AACAATCTCAGCTTAATTGT+GGG - Chr3:55860273-55860292 MsG0380014507.01.T01:intron 30.0%
AAGATAGAGACATAAATCAC+AGG + Chr3:55861872-55861891 None:intergenic 30.0%
AATAAAACAGCCTAATAACC+GGG + Chr3:55860814-55860833 None:intergenic 30.0%
AATCTCTTAAATTTGATGCG+GGG + Chr3:55861272-55861291 None:intergenic 30.0%
AATGGATCCAAGATTAACAA+GGG - Chr3:55859593-55859612 MsG0380014507.01.T01:CDS 30.0%
ACCTAACATAAAGGAGATAA+AGG - Chr3:55862289-55862308 MsG0380014507.01.T01:intron 30.0%
ACCTTTATCTCCTTTATGTT+AGG + Chr3:55862293-55862312 None:intergenic 30.0%
AGAATCAACAGAATTTGTCT+CGG + Chr3:55861213-55861232 None:intergenic 30.0%
AGAATGCATGTGAATACATA+TGG + Chr3:55862452-55862471 None:intergenic 30.0%
AGGTTTCCTAAGTGTTTAAA+TGG - Chr3:55859187-55859206 MsG0380014507.01.T01:intron 30.0%
AGTGCGATATAATTTATGCA+TGG - Chr3:55859499-55859518 MsG0380014507.01.T01:intron 30.0%
ATGTCATTCCTCAACTATAT+TGG + Chr3:55859221-55859240 None:intergenic 30.0%
ATTGTGGGATTATTTAATGG+AGG - Chr3:55860288-55860307 MsG0380014507.01.T01:intron 30.0%
ATTTAATGGAGGAAAAGAAG+TGG - Chr3:55860299-55860318 MsG0380014507.01.T01:intron 30.0%
CTAAAGTGATTTCTTGGAAT+TGG - Chr3:55860445-55860464 MsG0380014507.01.T01:intron 30.0%
CTAATTGATACTCTTATGAC+AGG - Chr3:55862261-55862280 MsG0380014507.01.T01:intron 30.0%
CTATAGAAAAATTGGGATAC+GGG - Chr3:55858664-55858683 MsG0380014507.01.T01:three_prime_UTR 30.0%
GACTTAAATTTAGCATGCTT+GGG - Chr3:55860322-55860341 MsG0380014507.01.T01:intron 30.0%
GAGATATTATGCTCATTGTA+CGG - Chr3:55859803-55859822 MsG0380014507.01.T01:CDS 30.0%
GATAAGGATGGTTATTATTG+AGG - Chr3:55859558-55859577 MsG0380014507.01.T01:intron 30.0%
GATTATGACAAAAGACTACA+TGG + Chr3:55859830-55859849 None:intergenic 30.0%
GCTATAGAAAAATTGGGATA+CGG - Chr3:55858663-55858682 MsG0380014507.01.T01:three_prime_UTR 30.0%
GTACTTTATGATCATGAATG+AGG - Chr3:55859425-55859444 MsG0380014507.01.T01:CDS 30.0%
TACAAACACTTGTAGCATAA+AGG - Chr3:55859123-55859142 MsG0380014507.01.T01:intron 30.0%
TGACATATGTACATAAGCTT+TGG - Chr3:55859235-55859254 MsG0380014507.01.T01:intron 30.0%
TTGCTTATATTAAGGCCATA+GGG - Chr3:55859968-55859987 MsG0380014507.01.T01:CDS 30.0%
TTTAATGGAGGAAAAGAAGT+GGG - Chr3:55860300-55860319 MsG0380014507.01.T01:intron 30.0%
TTTGCTTATATTAAGGCCAT+AGG - Chr3:55859967-55859986 MsG0380014507.01.T01:CDS 30.0%
TTTGTCACAATTTCTTGTGT+AGG - Chr3:55861064-55861083 MsG0380014507.01.T01:intron 30.0%
! AGGCGTGTTTCTATTATAAA+AGG - Chr3:55861622-55861641 MsG0380014507.01.T01:intron 30.0%
! ATATAACCAGGCTTTATATC+AGG + Chr3:55861463-55861482 None:intergenic 30.0%
! ATGTGGTGGAGTATAATTAA+AGG - Chr3:55859384-55859403 MsG0380014507.01.T01:CDS 30.0%
! CTATTTTCATCTGAAGACAT+TGG + Chr3:55859710-55859729 None:intergenic 30.0%
! GGCGTGTTTCTATTATAAAA+GGG - Chr3:55861623-55861642 MsG0380014507.01.T01:intron 30.0%
! GGTCTGTTTGAATAAGTTTT+TGG + Chr3:55862090-55862109 None:intergenic 30.0%
! TAAAAGGGATTGTTATTGCA+AGG - Chr3:55861638-55861657 MsG0380014507.01.T01:intron 30.0%
! TACTGATTATCTGATAAGGA+TGG - Chr3:55859546-55859565 MsG0380014507.01.T01:intron 30.0%
! TCATATATCATAGGAAGTAC+CGG - Chr3:55861591-55861610 MsG0380014507.01.T01:intron 30.0%
!! AAATGAAGTGAAAGTGCTTA+CGG + Chr3:55858543-55858562 None:intergenic 30.0%
!! ATAAGAGTATCAATTAGCTC+AGG + Chr3:55862258-55862277 None:intergenic 30.0%
!!! CTATCTTTTGACTTTTAAGG+AGG - Chr3:55861885-55861904 MsG0380014507.01.T01:intron 30.0%
AAGCTATCATAGAGAGCTTA+TGG + Chr3:55858800-55858819 None:intergenic 35.0%
AAGCTCTCTATGATAGCTTA+TGG - Chr3:55858801-55858820 MsG0380014507.01.T01:intron 35.0%
ACACTACATTCAGACTTAGA+AGG - Chr3:55861677-55861696 MsG0380014507.01.T01:intron 35.0%
ACGTTCTTGTTGGATTTAAG+AGG - Chr3:55859648-55859667 MsG0380014507.01.T01:intron 35.0%
AGCAAAAGTAGGTCAAAGAA+AGG - Chr3:55859890-55859909 MsG0380014507.01.T01:CDS 35.0%
AGCAAACTATTTAGTCCCTA+TGG + Chr3:55859986-55860005 None:intergenic 35.0%
AGCTTATGGAAACAGCTTAT+AGG - Chr3:55858815-55858834 MsG0380014507.01.T01:intron 35.0%
ATATAGACTATGGGTCTGTT+TGG + Chr3:55859046-55859065 None:intergenic 35.0%
ATGGAAGGTAATACTTACAG+TGG + Chr3:55861736-55861755 None:intergenic 35.0%
CAAAACACGATATGATCGAA+AGG + Chr3:55862552-55862571 None:intergenic 35.0%
CAACAATCTCAGCTTAATTG+TGG - Chr3:55860272-55860291 MsG0380014507.01.T01:intron 35.0%
CAATTTGTGTACGTATAAGG+TGG - Chr3:55859353-55859372 MsG0380014507.01.T01:CDS 35.0%
CACCTTATACGTACACAAAT+TGG + Chr3:55859355-55859374 None:intergenic 35.0%
CAGGTATTCACCTAACATAA+AGG - Chr3:55862280-55862299 MsG0380014507.01.T01:intron 35.0%
CTTACTTCCCTTGTTAATCT+TGG + Chr3:55859603-55859622 None:intergenic 35.0%
GAATGGATCCAAGATTAACA+AGG - Chr3:55859592-55859611 MsG0380014507.01.T01:CDS 35.0%
GCTTATGGAAACAGCTTATA+GGG - Chr3:55858816-55858835 MsG0380014507.01.T01:intron 35.0%
GGACTTAAATTTAGCATGCT+TGG - Chr3:55860321-55860340 MsG0380014507.01.T01:intron 35.0%
TACATTCAGACTTAGAAGGA+TGG - Chr3:55861681-55861700 MsG0380014507.01.T01:intron 35.0%
TAGACTGCACAATGATAGTA+TGG - Chr3:55860559-55860578 MsG0380014507.01.T01:intron 35.0%
TGGAAGGTAATACTTACAGT+GGG + Chr3:55861735-55861754 None:intergenic 35.0%
TGGTTTGATGAACTTAGTGA+CGG - Chr3:55859255-55859274 MsG0380014507.01.T01:intron 35.0%
TTATATTGTGCAGCTCAAAG+TGG - Chr3:55861477-55861496 MsG0380014507.01.T01:intron 35.0%
TTTACTTTCATAGGCTCTCT+AGG - Chr3:55860204-55860223 MsG0380014507.01.T01:intron 35.0%
TTTCTTGGAATTGGTTGCAT+TGG - Chr3:55860454-55860473 MsG0380014507.01.T01:intron 35.0%
! AAGGAGGGTGTAGTTAAAAT+AGG - Chr3:55861901-55861920 MsG0380014507.01.T01:intron 35.0%
! CAAGTTGGGATAATCTCTTA+GGG - Chr3:55861030-55861049 MsG0380014507.01.T01:intron 35.0%
! CAATGTGTGTTTTGTGTACA+TGG - Chr3:55862154-55862173 MsG0380014507.01.T01:intron 35.0%
! CATTTTTCATGCTTGTGCTT+AGG - Chr3:55860033-55860052 MsG0380014507.01.T01:intron 35.0%
! CTTTCGATCATATCGTGTTT+TGG - Chr3:55862550-55862569 MsG0380014507.01.T01:CDS 35.0%
! GATTTTAGACAAAGAAGCAG+TGG - Chr3:55861411-55861430 MsG0380014507.01.T01:intron 35.0%
!! AGGGACTAAATAGTTTGCTT+AGG - Chr3:55859987-55860006 MsG0380014507.01.T01:intron 35.0%
!! GATATTGGGTTGATTATTGG+TGG - Chr3:55860711-55860730 MsG0380014507.01.T01:intron 35.0%
!! GTGGTACTGATTATCTGATA+AGG - Chr3:55859542-55859561 MsG0380014507.01.T01:intron 35.0%
!! TTGAGGCAATTGATTTGGAA+TGG - Chr3:55859575-55859594 MsG0380014507.01.T01:CDS 35.0%
!!! GATCATATCGTGTTTTGGAA+AGG - Chr3:55862555-55862574 MsG0380014507.01.T01:CDS 35.0%
!!! TCTTGATTTTTGCTGTTGTC+AGG - Chr3:55860617-55860636 MsG0380014507.01.T01:intron 35.0%
AACTCGACTGAACAAAACTC+CGG + Chr3:55861795-55861814 None:intergenic 40.0%
ACAGAACCATGCTGAAATGA+AGG + Chr3:55861155-55861174 None:intergenic 40.0%
AGAGATTAGATAAAACCGCG+AGG - Chr3:55861285-55861304 MsG0380014507.01.T01:intron 40.0%
AGATTGCCTTCATTTCAGCA+TGG - Chr3:55861146-55861165 MsG0380014507.01.T01:intron 40.0%
AGTGCAACATCAGTTGATCT+AGG + Chr3:55859676-55859695 None:intergenic 40.0%
ATAAACCTGCTTCGGAAATG+AGG + Chr3:55861185-55861204 None:intergenic 40.0%
ATGCTGAAATGAAGGCAATC+TGG + Chr3:55861147-55861166 None:intergenic 40.0%
ATTACCAGACTCATCTCTAG+AGG + Chr3:55861117-55861136 None:intergenic 40.0%
ATTGGTGGAATTAGTGTCAG+TGG - Chr3:55860726-55860745 MsG0380014507.01.T01:intron 40.0%
CAACACAAAACGCATTGAAC+TGG + Chr3:55862183-55862202 None:intergenic 40.0%
CAATGATAGTATGGCATGCA+TGG - Chr3:55860568-55860587 MsG0380014507.01.T01:intron 40.0%
CCTAAGAGATTATCCCAACT+TGG + Chr3:55861032-55861051 None:intergenic 40.0%
CTGTTTGTGGTCTATTTGGA+AGG - Chr3:55860354-55860373 MsG0380014507.01.T01:CDS 40.0%
CTTCCAAATAGACCACAAAC+AGG + Chr3:55860356-55860375 None:intergenic 40.0%
GAGAGCTTATGGAAATAAGC+TGG + Chr3:55858789-55858808 None:intergenic 40.0%
GGCCAATTTGTGTACGTATA+AGG - Chr3:55859350-55859369 MsG0380014507.01.T01:CDS 40.0%
GGTTTGATGAACTTAGTGAC+GGG - Chr3:55859256-55859275 MsG0380014507.01.T01:intron 40.0%
GTTATTGCAAGGCGTAATTG+TGG - Chr3:55861649-55861668 MsG0380014507.01.T01:intron 40.0%
TAAACCTGCTTCGGAAATGA+GGG + Chr3:55861184-55861203 None:intergenic 40.0%
TATCTGCATACTGTCTTAGC+AGG - Chr3:55860876-55860895 MsG0380014507.01.T01:intron 40.0%
TCTAGAGATGAGTCTGGTAA+TGG - Chr3:55861116-55861135 MsG0380014507.01.T01:intron 40.0%
TGATCATGAATGAGGATGAG+AGG - Chr3:55859433-55859452 MsG0380014507.01.T01:CDS 40.0%
TGGAATTGGTTGCATTGGAA+AGG - Chr3:55860459-55860478 MsG0380014507.01.T01:intron 40.0%
TTACGGTGGAGAAAGAGATT+TGG + Chr3:55858526-55858545 None:intergenic 40.0%
TTCACACTGAAAACTAGTGC+AGG - Chr3:55859308-55859327 MsG0380014507.01.T01:intron 40.0%
TTGAGCTGCACAATATAACC+AGG + Chr3:55861475-55861494 None:intergenic 40.0%
TTGCCTGTTTGTGGTCTATT+TGG - Chr3:55860350-55860369 MsG0380014507.01.T01:CDS 40.0%
TTGGTGGAATTAGTGTCAGT+GGG - Chr3:55860727-55860746 MsG0380014507.01.T01:intron 40.0%
TTTAGACAAAGAAGCAGTGG+AGG - Chr3:55861414-55861433 MsG0380014507.01.T01:intron 40.0%
! ATAAGGTGGAGAGGTATATG+TGG - Chr3:55859367-55859386 MsG0380014507.01.T01:CDS 40.0%
! ATCTGGGATATGAGTCTGAT+TGG - Chr3:55860082-55860101 MsG0380014507.01.T01:intron 40.0%
! CCAAGTTGGGATAATCTCTT+AGG - Chr3:55861029-55861048 MsG0380014507.01.T01:intron 40.0%
!! GCGGATATTGGGTTGATTAT+TGG - Chr3:55860708-55860727 MsG0380014507.01.T01:intron 40.0%
!! GGTTCTTTTCGATTCGATTG+AGG - Chr3:55858685-55858704 MsG0380014507.01.T01:exon 40.0%
AACAAGAACGTGATCTGTGG+TGG + Chr3:55859639-55859658 None:intergenic 45.0%
AAGAGCGAGTGAGAGATGAA+CGG + Chr3:55858472-55858491 None:intergenic 45.0%
ACCACAGATCACGTTCTTGT+TGG - Chr3:55859638-55859657 MsG0380014507.01.T01:CDS 45.0%
ACTTAGAAGGATGGTAGCTG+GGG - Chr3:55861690-55861709 MsG0380014507.01.T01:intron 45.0%
AGACTTAGAAGGATGGTAGC+TGG - Chr3:55861688-55861707 MsG0380014507.01.T01:intron 45.0%
AGCCAAACTCTACTACCTGA+GGG - Chr3:55862337-55862356 MsG0380014507.01.T01:intron 45.0%
ATCCCTCAGGTAGTAGAGTT+TGG + Chr3:55862342-55862361 None:intergenic 45.0%
ATCTCTCACTCGCTCTTCAT+CGG - Chr3:55858475-55858494 MsG0380014507.01.T01:three_prime_UTR 45.0%
CACTGAAAACTAGTGCAGGA+AGG - Chr3:55859312-55859331 MsG0380014507.01.T01:intron 45.0%
CGGTAGACATAAACCTGCTT+CGG + Chr3:55861193-55861212 None:intergenic 45.0%
CTAGAGGATACATTCGTCTG+AGG + Chr3:55861101-55861120 None:intergenic 45.0%
CTCTTAAATTTGATGCGGGG+AGG + Chr3:55861269-55861288 None:intergenic 45.0%
CTTCATGATCCAGTGAAACC+CGG - Chr3:55860793-55860812 MsG0380014507.01.T01:intron 45.0%
GACTATGGGTCTGTTTGGAA+TGG + Chr3:55859041-55859060 None:intergenic 45.0%
GACTTAGAAGGATGGTAGCT+GGG - Chr3:55861689-55861708 MsG0380014507.01.T01:intron 45.0%
GGTCTGGTATTGCGGATATT+GGG - Chr3:55860697-55860716 MsG0380014507.01.T01:intron 45.0%
GTAGCATAAAGGTGACTGTC+TGG - Chr3:55859134-55859153 MsG0380014507.01.T01:intron 45.0%
TCCAACAAGAACGTGATCTG+TGG + Chr3:55859642-55859661 None:intergenic 45.0%
TCCAGTGAAACCCGGTTATT+AGG - Chr3:55860801-55860820 MsG0380014507.01.T01:intron 45.0%
TGGTGGAATTAGTGTCAGTG+GGG - Chr3:55860728-55860747 MsG0380014507.01.T01:intron 45.0%
TGGTTGCATTGGAAAGGAAC+TGG - Chr3:55860465-55860484 MsG0380014507.01.T01:intron 45.0%
TGTGTACGTATAAGGTGGAG+AGG - Chr3:55859358-55859377 MsG0380014507.01.T01:CDS 45.0%
! AGGCAATTCAGGTTCTGGTA+AGG + Chr3:55861249-55861268 None:intergenic 45.0%
! AGTGCAGGAAGGTGTATGTT+TGG - Chr3:55859323-55859342 MsG0380014507.01.T01:intron 45.0%
! GAGGTACCTGATATAAAGCC+TGG - Chr3:55861454-55861473 MsG0380014507.01.T01:intron 45.0%
! GGAAGGTGTATGTTTGGCAT+TGG - Chr3:55859329-55859348 MsG0380014507.01.T01:intron 45.0%
! GGGCATTCATTTTATCCCTC+AGG + Chr3:55862355-55862374 None:intergenic 45.0%
! GTATCCTCTAGAGATGAGTC+TGG - Chr3:55861110-55861129 MsG0380014507.01.T01:intron 45.0%
!! TGAAGTGAAAGTGCTTACGG+TGG + Chr3:55858540-55858559 None:intergenic 45.0%
ACTGAACAAAACTCCGGCCA+AGG + Chr3:55861789-55861808 None:intergenic 50.0%
AGACAAAGAAGCAGTGGAGG+AGG - Chr3:55861417-55861436 MsG0380014507.01.T01:intron 50.0%
AGTGGTACTTGAGTGCAGAG+TGG - Chr3:55859523-55859542 MsG0380014507.01.T01:intron 50.0%
CGGTGGAGAAAGAGATTTGG+CGG + Chr3:55858523-55858542 None:intergenic 50.0%
CTCTTGCTTCGTCTACGCAT+CGG - Chr3:55860523-55860542 MsG0380014507.01.T01:intron 50.0%
CTGCTTGTAACTCTGCACCT+TGG - Chr3:55861769-55861788 MsG0380014507.01.T01:intron 50.0%
GAAACACGCCTCTTGTTCTC+CGG + Chr3:55861613-55861632 None:intergenic 50.0%
GAAGAGTCTTCGTGAAGCCA+TGG + Chr3:55858438-55858457 None:intergenic 50.0%
GAGATTTGGCGGAGATACGT+CGG + Chr3:55858512-55858531 None:intergenic 50.0%
GAGCCAAACTCTACTACCTG+AGG - Chr3:55862336-55862355 MsG0380014507.01.T01:intron 50.0%
GCCTAATAACCGGGTTTCAC+TGG + Chr3:55860805-55860824 None:intergenic 50.0%
GGAGGTGAAAGAACAGAGAG+AGG - Chr3:55861435-55861454 MsG0380014507.01.T01:intron 50.0%
GGGTCTGGTATTGCGGATAT+TGG - Chr3:55860696-55860715 MsG0380014507.01.T01:intron 50.0%
GTCCACACAAACCAGAACTG+TGG + Chr3:55860646-55860665 None:intergenic 50.0%
TTCAGGTGCTAAGCAGAGCT+GGG - Chr3:55860676-55860695 MsG0380014507.01.T01:intron 50.0%
TTGTAACTCTGCACCTTGGC+CGG - Chr3:55861773-55861792 MsG0380014507.01.T01:intron 50.0%
TTGTCCCTCATTTCCGAAGC+AGG - Chr3:55861177-55861196 MsG0380014507.01.T01:intron 50.0%
! AGGCTGTGTCCTTTTGGTCT+GGG - Chr3:55860896-55860915 MsG0380014507.01.T01:intron 50.0%
! AGGTGGAGAGGTATATGTGG+TGG - Chr3:55859370-55859389 MsG0380014507.01.T01:CDS 50.0%
! CTTAGCAGGCTGTGTCCTTT+TGG - Chr3:55860890-55860909 MsG0380014507.01.T01:intron 50.0%
! GGGGGTTTGGCATTTTTCGT+TGG - Chr3:55860916-55860935 MsG0380014507.01.T01:intron 50.0%
! TGGGTTTGCTTGCCTGTTTG+TGG - Chr3:55860341-55860360 MsG0380014507.01.T01:CDS 50.0%
!! AGGAAGTACCGGAGAACAAG+AGG - Chr3:55861602-55861621 MsG0380014507.01.T01:intron 50.0%
!! CAGTTCTGGTTTGTGTGGAC+AGG - Chr3:55860646-55860665 MsG0380014507.01.T01:intron 50.0%
!! GACACTAGTCTTCAGCCTGT+TGG - Chr3:55862388-55862407 MsG0380014507.01.T01:intron 50.0%
!! GTCCACAGTTCTGGTTTGTG+TGG - Chr3:55860641-55860660 MsG0380014507.01.T01:intron 50.0%
!! TGAACTTAGTGACGGGTGCA+TGG - Chr3:55859263-55859282 MsG0380014507.01.T01:intron 50.0%
AACCGCGAGGCACATTATGC+AGG - Chr3:55861298-55861317 MsG0380014507.01.T01:intron 55.0%
AGAAGGATGGTAGCTGGGGT+TGG - Chr3:55861694-55861713 MsG0380014507.01.T01:intron 55.0%
CAGAGCTGGGTCTGGTATTG+CGG - Chr3:55860689-55860708 MsG0380014507.01.T01:intron 55.0%
CGATGCGTAGACGAAGCAAG+AGG + Chr3:55860525-55860544 None:intergenic 55.0%
CTTCAGGTGCTAAGCAGAGC+TGG - Chr3:55860675-55860694 MsG0380014507.01.T01:intron 55.0%
GAAGGATGGTAGCTGGGGTT+GGG - Chr3:55861695-55861714 MsG0380014507.01.T01:intron 55.0%
GCGTAGACGAAGCAAGAGGA+TGG + Chr3:55860521-55860540 None:intergenic 55.0%
GGAATTAGTGTCAGTGGGGC+AGG - Chr3:55860732-55860751 MsG0380014507.01.T01:intron 55.0%
TGCCAAACCCCCAGACCAAA+AGG + Chr3:55860908-55860927 None:intergenic 55.0%
TGCCTGCATAATGTGCCTCG+CGG + Chr3:55861303-55861322 None:intergenic 55.0%
TGTGGACAGGTCAGGACTTC+AGG - Chr3:55860659-55860678 MsG0380014507.01.T01:intron 55.0%
TTGATGCGGGGAGGCAATTC+AGG + Chr3:55861260-55861279 None:intergenic 55.0%
TTGCTTCGTCTACGCATCGG+TGG - Chr3:55860526-55860545 MsG0380014507.01.T01:intron 55.0%
TTGTCAGGCGTCCACAGTTC+TGG - Chr3:55860632-55860651 MsG0380014507.01.T01:intron 55.0%
! CAGGCTGTGTCCTTTTGGTC+TGG - Chr3:55860895-55860914 MsG0380014507.01.T01:intron 55.0%
! CTGGTTTGTGTGGACAGGTC+AGG - Chr3:55860651-55860670 MsG0380014507.01.T01:intron 55.0%
! GCTGTGTCCTTTTGGTCTGG+GGG - Chr3:55860898-55860917 MsG0380014507.01.T01:intron 55.0%
! GGCTGTGTCCTTTTGGTCTG+GGG - Chr3:55860897-55860916 MsG0380014507.01.T01:intron 55.0%
! GTCCTTTTGGTCTGGGGGTT+TGG - Chr3:55860903-55860922 MsG0380014507.01.T01:intron 55.0%
GTGCTAAGCAGAGCTGGGTC+TGG - Chr3:55860681-55860700 MsG0380014507.01.T01:intron 60.0%
! CGGGGAGGCAATTCAGGTTC+TGG + Chr3:55861254-55861273 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55858424 55862649 55858424 ID=MsG0380014507.01;Name=MsG0380014507.01
Chr3 mRNA 55858424 55862649 55858424 ID=MsG0380014507.01.T01;Parent=MsG0380014507.01;Name=MsG0380014507.01.T01;_AED=0.49;_eAED=0.54;_QI=13|0.4|0.66|1|1|1|6|267|258
Chr3 exon 55858424 55858790 55858424 ID=MsG0380014507.01.T01:exon:4168;Parent=MsG0380014507.01.T01
Chr3 exon 55859336 55859469 55859336 ID=MsG0380014507.01.T01:exon:4167;Parent=MsG0380014507.01.T01
Chr3 exon 55859575 55859661 55859575 ID=MsG0380014507.01.T01:exon:4166;Parent=MsG0380014507.01.T01
Chr3 exon 55859739 55859987 55859739 ID=MsG0380014507.01.T01:exon:4165;Parent=MsG0380014507.01.T01
Chr3 exon 55860333 55860434 55860333 ID=MsG0380014507.01.T01:exon:4164;Parent=MsG0380014507.01.T01
Chr3 exon 55862532 55862649 55862532 ID=MsG0380014507.01.T01:exon:4163;Parent=MsG0380014507.01.T01
Chr3 five_prime_UTR 55862637 55862649 55862637 ID=MsG0380014507.01.T01:five_prime_utr;Parent=MsG0380014507.01.T01
Chr3 CDS 55862532 55862636 55862532 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 CDS 55860333 55860434 55860333 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 CDS 55859739 55859987 55859739 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 CDS 55859575 55859661 55859575 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 CDS 55859336 55859469 55859336 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 CDS 55858691 55858790 55858691 ID=MsG0380014507.01.T01:cds;Parent=MsG0380014507.01.T01
Chr3 three_prime_UTR 55858424 55858690 55858424 ID=MsG0380014507.01.T01:three_prime_utr;Parent=MsG0380014507.01.T01
Gene Sequence

>MsG0380014507.01.T01

ATGGCTTCACGAAGACTCTTCTCGTCACTACTCCGTTCATCTCTCACTCGCTCTTCATCGGAGTTTCAATCTCCGACGTATCTCCGCCAAATCTCTTTCTCCACCGCGTCCACAGTTCTGGTTTGTGTGGACAGGTCAGGACTTCAGGTGCTAAGCAGAGCTGGGTCTGGTATTGCGGATATTGGGTTGATTATTGGTGGAATTAGTGTTACAGTGTCTCCTCAGACGAATGTATCCTCTAGAGATGAGTCTGGTAATGGTTTGACCAGATTGCCTTCATTTCAGCATGGTTCTGTGCTTGTCCCTCATTTCCGAAGCAGGTTTATGTCTACCGAGACAAATTCTGTTGATTCTTCTGAAGATAGTTCCTTACCAGAACCTGAATTGCCTCCCCGCATCAAATTTAAGAGATTAGATAAAACCGCGAGGCACATTATGCAGGCATGTGACTTCTCTATTTTAGACAAAGAAGCAGTGGAGGAGGTGAAAGAACAGAGAGAGGTACCTGATATAAAGCCTGGTTATATTGTGCAGCTCAAAGTGGAAGTACCGGAGAACAAGAGGCGTGTTTCTATTATAAAAGGGATTGTTATTGCAAGGCGTAATTGTGGACTCAACACTACATTCAGACTTAGAAGGATGGTAGCTGGGGTTGGGATTGAGTCTCTATTCCCACTGTATTCACCTAACATAAAGGAGATAAAGGTGCTTGACAAGAAGAAAGTTCGAAGAGCCAAACTCTACTACCTGAGGGATAAAATGAATGCCCTAAAATAA
Protein sequence

>MsG0380014507.01.T01

MASRRLFSSLLRSSLTRSSSEFQSPTYLRQISFSTASTVLVCVDRSGLQVLSRAGSGIADIGLIIGGISVTVSPQTNVSSRDESGNGLTRLPSFQHGSVLVPHFRSRFMSTETNSVDSSEDSSLPEPELPPRIKFKRLDKTARHIMQACDFSILDKEAVEEVKEQREVPDIKPGYIVQLKVEVPENKRRVSIIKGIVIARRNCGLNTTFRLRRMVAGVGIESLFPLYSPNIKEIKVLDKKKVRRAKLYYLRDKMNALK*