AlfalfaGEDB | MsG0680031368.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031368.01

KEGG: K02993
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF01251

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031368.01.T01	XP_003618765.1	100	191	0	0	1	191	1	191	4.08E-135	385

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031368.01.T01	Q9C514	81.152	191	36	0	1	191	1	191	3.47E-115	328

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031368.01.T01	G7KN51	100.000	191	0	0	1	191	1	191	1.95e-135	385

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048040.01	MsG0680031368.01	0.817515	3.168863e-52	2.312633e-49
MsG0080048922.01	MsG0680031368.01	0.807974	3.888084e-50	2.196106e-47
MsG0180000096.01	MsG0680031368.01	0.817410	3.345415e-52	2.434518e-49
MsG0180000118.01	MsG0680031368.01	0.866086	3.687336e-65	1.227422e-61
MsG0180001169.01	MsG0680031368.01	0.812011	5.254196e-51	3.302282e-48
MsG0180001829.01	MsG0680031368.01	0.831056	2.071681e-55	2.222856e-52
MsG0180002738.01	MsG0680031368.01	0.818388	2.012394e-52	1.504349e-49
MsG0180003585.01	MsG0680031368.01	0.868809	4.955354e-66	1.816890e-62
MsG0180003897.01	MsG0680031368.01	0.881921	1.605543e-70	9.584753e-67
MsG0180004503.01	MsG0680031368.01	0.840597	7.901676e-58	1.131024e-54
MsG0180004829.01	MsG0680031368.01	0.881153	3.041673e-70	1.762165e-66
MsG0180005384.01	MsG0680031368.01	0.912531	1.751357e-83	3.958050e-79
MsG0180005573.01	MsG0680031368.01	0.863674	2.103385e-64	6.429755e-61
MsG0180005789.01	MsG0680031368.01	0.824564	7.539001e-54	6.702491e-51
MsG0280006301.01	MsG0680031368.01	0.857807	1.268746e-62	3.170045e-59
MsG0380014507.01	MsG0680031368.01	0.844453	7.488750e-59	1.209513e-55
MsG0680031368.01	MsG0680032459.01	0.885007	1.178504e-71	7.954205e-68
MsG0680031368.01	MsG0680035611.01	0.863841	1.865814e-64	5.736578e-61
MsG0680031368.01	MsG0780037290.01	0.827187	1.796441e-54	1.721728e-51
MsG0680031368.01	MsG0780038383.01	0.845292	4.447796e-59	7.377876e-56
MsG0680031368.01	MsG0780040174.01	0.809117	2.217438e-50	1.290834e-47
MsG0680031368.01	MsG0780041058.01	0.827964	1.169188e-54	1.146243e-51
MsG0680031368.01	MsG0780041240.01	0.816838	4.497591e-52	3.222063e-49
MsG0680031368.01	MsG0780041311.01	0.835452	1.664427e-56	2.036190e-53
MsG0680031368.01	MsG0780041461.01	0.828272	9.859641e-55	9.752445e-52
MsG0680031368.01	MsG0780041522.01	0.894214	3.042242e-75	2.996609e-71
MsG0680031368.01	MsG0780041790.01	0.857594	1.467118e-62	3.640525e-59
MsG0680031368.01	MsG0880041941.01	0.880637	4.656877e-70	2.645613e-66
MsG0680031368.01	MsG0880042517.01	0.886277	3.932842e-72	2.790841e-68
MsG0680031368.01	MsG0880042896.01	0.856141	3.931431e-62	9.290902e-59
MsG0680031368.01	MsG0880043076.01	0.904060	1.820845e-79	2.768024e-75
MsG0680031368.01	MsG0880044204.01	0.865503	5.633801e-65	1.837271e-61
MsG0680031368.01	MsG0880045836.01	0.858265	9.274074e-63	2.353053e-59
MsG0680031368.01	MsG0880046220.01	0.877476	6.094177e-69	3.068722e-65
MsG0680031368.01	MsG0880046760.01	0.813175	2.924168e-51	1.895819e-48
MsG0680031368.01	MsG0880047310.01	0.851659	7.686154e-61	1.566677e-57
MsG0480019165.01	MsG0680031368.01	0.849212	3.739030e-60	7.037908e-57
MsG0480019632.01	MsG0680031368.01	0.813555	2.412314e-51	1.580368e-48
MsG0480020796.01	MsG0680031368.01	0.923396	2.806467e-89	1.119799e-84
MsG0480020911.01	MsG0680031368.01	0.913070	9.420575e-84	2.187807e-79
MsG0480021279.01	MsG0680031368.01	0.892145	2.078450e-74	1.875805e-70
MsG0480021293.01	MsG0680031368.01	0.866106	3.633563e-65	1.210370e-61
MsG0480021417.01	MsG0680031368.01	0.907318	5.769539e-81	1.018327e-76
MsG0480022006.01	MsG0680031368.01	0.893738	4.750297e-75	4.584977e-71
MsG0480022041.01	MsG0680031368.01	0.821268	4.419325e-53	3.578175e-50
MsG0480022363.01	MsG0680031368.01	0.877624	5.414343e-69	2.740581e-65
MsG0480022955.01	MsG0680031368.01	0.897580	1.225418e-76	1.393541e-72
MsG0480023380.01	MsG0680031368.01	0.911829	3.901605e-83	8.518816e-79
MsG0480023774.01	MsG0680031368.01	0.882775	7.850970e-71	4.845972e-67
MsG0480023931.01	MsG0680031368.01	0.839503	1.523875e-57	2.108651e-54
MsG0480023996.01	MsG0680031368.01	0.868563	5.949621e-66	2.162140e-62
MsG0580024481.01	MsG0680031368.01	0.835728	1.417338e-56	1.748347e-53
MsG0580024540.01	MsG0680031368.01	0.877942	4.190231e-69	2.147530e-65
MsG0580024738.01	MsG0680031368.01	0.892434	1.593845e-74	1.456880e-70
MsG0580024894.01	MsG0680031368.01	0.930516	1.462303e-93	8.718002e-89
MsG0580025750.01	MsG0680031368.01	0.848126	7.477743e-60	1.358322e-56
MsG0380015446.01	MsG0680031368.01	0.805502	1.294221e-49	6.858258e-47
MsG0380015766.01	MsG0680031368.01	0.812541	4.025014e-51	2.566279e-48
MsG0380015857.01	MsG0680031368.01	0.906111	2.102179e-80	3.508763e-76
MsG0380016678.01	MsG0680031368.01	0.886979	2.133806e-72	1.557779e-68
MsG0380016732.01	MsG0680031368.01	0.830647	2.610293e-55	2.767094e-52
MsG0380016744.01	MsG0680031368.01	0.877637	5.354424e-69	2.711746e-65
MsG0380016760.01	MsG0680031368.01	0.862461	4.985862e-64	1.461418e-60
MsG0380017496.01	MsG0680031368.01	0.807867	4.097391e-50	2.307729e-47
MsG0380017516.01	MsG0680031368.01	0.865422	5.974172e-65	1.942420e-61
MsG0380018056.01	MsG0680031368.01	0.862142	6.246256e-64	1.810374e-60
MsG0480018164.01	MsG0680031368.01	0.911259	7.447743e-83	1.581997e-78
MsG0580026749.01	MsG0680031368.01	0.848378	6.366720e-60	1.166081e-56
MsG0280006629.01	MsG0680031368.01	0.898007	8.088106e-77	9.383775e-73
MsG0280006747.01	MsG0680031368.01	0.868304	7.214562e-66	2.596871e-62
MsG0280006760.01	MsG0680031368.01	0.852290	5.087982e-61	1.058223e-57
MsG0280007055.01	MsG0680031368.01	0.926937	2.357490e-91	1.145840e-86
MsG0280007995.01	MsG0680031368.01	0.800518	1.387860e-48	6.475404e-46
MsG0280010232.01	MsG0680031368.01	0.836216	1.065385e-56	1.333959e-53
MsG0280010519.01	MsG0680031368.01	0.843645	1.233833e-58	1.943239e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031368.01.T01	MTR_6g021670	100.000	191	0	0	1	191	1	191	4.94e-139	385
MsG0680031368.01.T01	MTR_6g085000	99.476	191	1	0	1	191	1	191	7.82e-139	385
MsG0680031368.01.T01	MTR_8g087480	68.182	44	6	1	145	188	51	86	1.05e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031368.01.T01	AT1G48830	81.152	191	36	1	191	1	191	3.54e-116	328
MsG0680031368.01.T01	AT1G48830	81.152	191	36	1	191	1	191	3.54e-116	328
MsG0680031368.01.T01	AT3G02560	80.628	191	37	1	191	1	191	1.14e-113	322
MsG0680031368.01.T01	AT3G02560	80.628	191	37	1	191	1	191	1.14e-113	322
MsG0680031368.01.T01	AT3G02560	80.628	191	37	1	191	1	191	1.14e-113	322
MsG0680031368.01.T01	AT5G16130	81.383	188	35	1	188	1	188	3.06e-113	320

Find 73 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTCAAGTTGCCTTTGATTC+TGG	0.180217	6:-19095792	MsG0680031368.01.T01:three_prime_UTR
CACTGAGAATGAACGAAATT+AGG	0.195576	6:+19098728	None:intergenic
TCGGTATTGTTTCTCTCCTT+TGG	0.252124	6:+19095977	None:intergenic
TACAGCCAAGTCGATGTTTC+TGG	0.252974	6:-19096982	MsG0680031368.01.T01:intron
TGAGCAGCGGAACCTTTCTT+TGG	0.264696	6:+19096250	None:intergenic
TTTGAAATATTATTTATTAT+AGG	0.266535	6:-19095711	MsG0680031368.01.T01:three_prime_UTR
AGACATTCTCCGCTGTTTAC+AGG	0.270663	6:-19095943	MsG0680031368.01.T01:CDS
AATCCCTTCCTCAATCTATA+TGG	0.283281	6:+19096931	None:intergenic
CGGTATTGTTTCTCTCCTTT+GGG	0.288337	6:+19095978	None:intergenic
AAATCCATGTCAGGCTTGTT+AGG	0.290791	6:-19096903	MsG0680031368.01.T01:CDS
ACTGAGAATGAACGAAATTA+GGG	0.350314	6:+19098729	None:intergenic
CGCACTAGGTACCGCGTTGA+TGG	0.384231	6:-19096145	MsG0680031368.01.T01:CDS
GTCTTCTTCAGTATTTGATC+TGG	0.398988	6:-19095664	MsG0680031368.01.T01:three_prime_UTR
AAGAAAATCAGCAAGGATAA+AGG	0.404032	6:-19097306	MsG0680031368.01.T01:CDS
CAATCCTCCTGGTGGCAATC+AGG	0.404585	6:+19096281	None:intergenic
GTATCCCGTTACTGAGGCTT+AGG	0.423073	6:-19095891	MsG0680031368.01.T01:exon
GAATGTCTCCAACTTGTATT+CGG	0.427405	6:+19095958	None:intergenic
TGCTGAGCCAACTGAATTTG+AGG	0.451294	6:-19097283	MsG0680031368.01.T01:CDS
GCAGCGGAACCTTTCTTTGG+TGG	0.457036	6:+19096253	None:intergenic
CTTCAGTATTTGATCTGGAA+TGG	0.473268	6:-19095659	MsG0680031368.01.T01:three_prime_UTR
ATCCCTTCCTCAATCTATAT+GGG	0.481881	6:+19096932	None:intergenic
TGAACCTAAGCCTCAGTAAC+GGG	0.482826	6:+19095887	None:intergenic
TTTGTTTCATGAATTGCATA+TGG	0.488047	6:-19095838	MsG0680031368.01.T01:three_prime_UTR
GTGTTACCTGCCGAGATTGT+TGG	0.493817	6:-19096172	MsG0680031368.01.T01:CDS
CTTCGATTTCGTTTCTGCAA+AGG	0.496535	6:-19098659	MsG0680031368.01.T01:intron
AAAAGCTACATTAATAAACT+AGG	0.498239	6:+19095731	None:intergenic
GCTGTTTACAGGAAACTATC+TGG	0.499187	6:-19095932	MsG0680031368.01.T01:CDS
ATCAAATACTGAAGAAGACT+TGG	0.499793	6:+19095668	None:intergenic
AAGACTTGGAAATAAGCAAA+TGG	0.501770	6:+19095682	None:intergenic
AGCAGTAAGTGTACGGCTAC+GGG	0.503167	6:+19096222	None:intergenic
ATTGTTCGTCCACCAAAGAA+AGG	0.505744	6:-19096262	MsG0680031368.01.T01:CDS
TTCTGGCAACCGCAAGGCTG+TGG	0.507229	6:-19096965	MsG0680031368.01.T01:CDS
AGATTGTTGGCAAGCGCACT+AGG	0.510306	6:-19096159	MsG0680031368.01.T01:CDS
AATCCATGTCAGGCTTGTTA+GGG	0.511974	6:-19096902	MsG0680031368.01.T01:CDS
GATTCCGCAAAATCCATGTC+AGG	0.518236	6:-19096912	MsG0680031368.01.T01:CDS
ACTGAATTTGAGGAATCTGT+TGG	0.520304	6:-19097273	MsG0680031368.01.T01:CDS
ATTTGAGGAATCTGTTGGAC+AGG	0.525688	6:-19097268	MsG0680031368.01.T01:intron
CAAACAAAATCCAGAATCAA+AGG	0.531464	6:+19095782	None:intergenic
CAGCAGTAAGTGTACGGCTA+CGG	0.532367	6:+19096221	None:intergenic
CGCTTGCCAACAATCTCGGC+AGG	0.533088	6:+19096166	None:intergenic
ACTGAGGCTTAGGTTCACTT+AGG	0.533972	6:-19095881	MsG0680031368.01.T01:exon
AACAAGTATTGTTAAATGCA+AGG	0.537282	6:+19095619	None:intergenic
GTTTGAAGATGTTCACATCA+AGG	0.540861	6:-19097329	MsG0680031368.01.T01:exon
AAACAATACCGAATACAAGT+TGG	0.543122	6:-19095966	MsG0680031368.01.T01:CDS
TCCATGTCCCATATAGATTG+AGG	0.544635	6:-19096939	MsG0680031368.01.T01:CDS
TGGTGGACGAACAATCCTCC+TGG	0.561389	6:+19096270	None:intergenic
GCTCCCTAACAAGCCTGACA+TGG	0.561527	6:+19096899	None:intergenic
TCCTCAATCTATATGGGACA+TGG	0.562889	6:+19096938	None:intergenic
ACAGATTCCTCAAATTCAGT+TGG	0.566353	6:+19097276	None:intergenic
CTTTGCAGAAACGAAATCGA+AGG	0.580318	6:+19098660	None:intergenic
GTGAACCTAAGCCTCAGTAA+CGG	0.584684	6:+19095886	None:intergenic
ATGTTATCCTGATTGCCACC+AGG	0.588268	6:-19096288	MsG0680031368.01.T01:CDS
AGTGCGCTTGCCAACAATCT+CGG	0.589160	6:+19096162	None:intergenic
CGTGGACAGCAGTAAGTGTA+CGG	0.599592	6:+19096215	None:intergenic
CGAGAAGAAATTTAGCGGCA+AGG	0.600668	6:-19096875	MsG0680031368.01.T01:intron
TGTCCCATATAGATTGAGGA+AGG	0.607696	6:-19096935	MsG0680031368.01.T01:CDS
CGATGTTTCTGGCAACCGCA+AGG	0.612148	6:-19096971	MsG0680031368.01.T01:CDS
GAGCTCGAGAAGAAATTTAG+CGG	0.626349	6:-19096880	MsG0680031368.01.T01:CDS
GGTTGCCAGAAACATCGACT+TGG	0.639023	6:+19096977	None:intergenic
TGATGGATCAAAGATCATGA+AGG	0.639271	6:-19096128	MsG0680031368.01.T01:intron
TGTCCACGAGGCAATGCTCG+AGG	0.642990	6:-19096200	MsG0680031368.01.T01:CDS
GTCCCATATAGATTGAGGAA+GGG	0.647191	6:-19096934	MsG0680031368.01.T01:CDS
ATCAAGGAAGAAAATCAGCA+AGG	0.649740	6:-19097313	MsG0680031368.01.T01:CDS
CAGTAAGTGTACGGCTACGG+GGG	0.652122	6:+19096224	None:intergenic
GTTTGAGTATCCCGTTACTG+AGG	0.655229	6:-19095897	MsG0680031368.01.T01:CDS
CATCCTCGAGCATTGCCTCG+TGG	0.673479	6:+19096197	None:intergenic
TTATCCTGATTGCCACCAGG+AGG	0.673801	6:-19096285	MsG0680031368.01.T01:CDS
TACACTTACTGCTGTCCACG+AGG	0.675978	6:-19096212	MsG0680031368.01.T01:CDS
GCAGTAAGTGTACGGCTACG+GGG	0.682631	6:+19096223	None:intergenic
CATGGATAACCACAGCCTTG+CGG	0.691240	6:+19096956	None:intergenic
AGATAGTTTCCTGTAAACAG+CGG	0.719077	6:+19095934	None:intergenic
TGGACGAACAATCCTCCTGG+TGG	0.731132	6:+19096273	None:intergenic
TGATCTTTGATCCATCAACG+CGG	0.833754	6:+19096134	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTGTTTAAATGATGTAATT+TGG	-	Chr6:19095793-19095812	MsG0680031368.01.T01:three_prime_UTR	15.0%
!!!	TTTATTTGATTTGAGTAAAT+GGG	-	Chr6:19095863-19095882	MsG0680031368.01.T01:three_prime_UTR	15.0%
!!!	TTTTATTTGATTTGAGTAAA+TGG	-	Chr6:19095862-19095881	MsG0680031368.01.T01:three_prime_UTR	15.0%
!!	AAAAGCTACATTAATAAACT+AGG	+	Chr6:19098638-19098657	None:intergenic	20.0%
!!	CTATTACATAAGCTATATTA+GGG	+	Chr6:19096527-19096546	None:intergenic	20.0%
!!	GTTAAAAAAACAATAACAAG+TGG	+	Chr6:19096990-19097009	None:intergenic	20.0%
!!	TAAAGCTTATTTATTAGCAT+AGG	+	Chr6:19096107-19096126	None:intergenic	20.0%
!!	TATCTCATCTTGTATTATAT+GGG	+	Chr6:19096281-19096300	None:intergenic	20.0%
!!	TATTACATAAGCTATATTAG+GGG	+	Chr6:19096526-19096545	None:intergenic	20.0%
!!	TTATCTCATCTTGTATTATA+TGG	+	Chr6:19096282-19096301	None:intergenic	20.0%
!!	TTTCAGGAAAAAAAATACTT+TGG	-	Chr6:19098612-19098631	MsG0680031368.01.T01:intron	20.0%
!!!	GATTTGAAATCAAAACATAT+TGG	+	Chr6:19097891-19097910	None:intergenic	20.0%
!!!	TGATTTTAATTGAATTCTTG+TGG	-	Chr6:19098339-19098358	MsG0680031368.01.T01:intron	20.0%
!!!	TGCTAATAAATAAGCTTTAA+TGG	-	Chr6:19096108-19096127	MsG0680031368.01.T01:intron	20.0%
!!!	TTAAACTTCTAAAATAGAGA+TGG	+	Chr6:19096605-19096624	None:intergenic	20.0%
!!!	TTTAACTTCTATTATAGAGA+TGG	+	Chr6:19096456-19096475	None:intergenic	20.0%
!!!	TTTTTATAAACTACCTTAAC+AGG	+	Chr6:19096146-19096165	None:intergenic	20.0%
!!!	TTTTTGTTAATGAGAACTAA+TGG	-	Chr6:19096185-19096204	MsG0680031368.01.T01:CDS	20.0%
!	AAAAATAAGTCAATCCAAAC+AGG	+	Chr6:19096081-19096100	None:intergenic	25.0%
!	AATTAAGGATCAAAAGACAA+TGG	+	Chr6:19097608-19097627	None:intergenic	25.0%
!	ACATATGCATATAAATAAGC+CGG	+	Chr6:19096219-19096238	None:intergenic	25.0%
!	ATTACATAAGCTATATTAGG+GGG	+	Chr6:19096525-19096544	None:intergenic	25.0%
!	ATTGGAATTTCATTATGAAC+TGG	-	Chr6:19097710-19097729	MsG0680031368.01.T01:intron	25.0%
!	CCTAAGATAGATTATGAAAA+CGG	+	Chr6:19096661-19096680	None:intergenic	25.0%
!	GCTATTACATAAGCTATATT+AGG	+	Chr6:19096528-19096547	None:intergenic	25.0%
!	GTTAAACAAGGTTTCAATTA+AGG	+	Chr6:19097623-19097642	None:intergenic	25.0%
!	TGATTATAGCAGATCTTATT+TGG	-	Chr6:19096892-19096911	MsG0680031368.01.T01:CDS	25.0%
!	TTTGTTTCATGAATTGCATA+TGG	-	Chr6:19098528-19098547	MsG0680031368.01.T01:intron	25.0%
!!	ACGAACATAAACAAAGTATT+CGG	+	Chr6:19095768-19095787	None:intergenic	25.0%
!!	CGTTTTCATAATCTATCTTA+GGG	-	Chr6:19096659-19096678	MsG0680031368.01.T01:intron	25.0%
!!	GTTTTCATAATCTATCTTAG+GGG	-	Chr6:19096660-19096679	MsG0680031368.01.T01:intron	25.0%
!!	TTTTATAAGCTACATTTCCA+GGG	-	Chr6:19096055-19096074	MsG0680031368.01.T01:intron	25.0%
!!	TTTTCATAATCTATCTTAGG+GGG	-	Chr6:19096661-19096680	MsG0680031368.01.T01:intron	25.0%
!!	TTTTTATAAGCTACATTTCC+AGG	-	Chr6:19096054-19096073	MsG0680031368.01.T01:intron	25.0%
!!!	AACTGGAATTTTGTTATGAT+TGG	-	Chr6:19097692-19097711	MsG0680031368.01.T01:intron	25.0%
!!!	AGTTAGACTGTTTTTGTATA+AGG	-	Chr6:19096480-19096499	MsG0680031368.01.T01:intron	25.0%
!!!	CAGTTTTAAATCAAACTGTA+GGG	-	Chr6:19097977-19097996	MsG0680031368.01.T01:intron	25.0%
!!!	TGTCTATGTTATTTCGTAAT+TGG	-	Chr6:19095974-19095993	MsG0680031368.01.T01:CDS	25.0%
!!!	TTAATTTTTGTTGTTGTTGC+AGG	-	Chr6:19097201-19097220	MsG0680031368.01.T01:intron	25.0%
	AAACAATACCGAATACAAGT+TGG	-	Chr6:19098400-19098419	MsG0680031368.01.T01:intron	30.0%
	AAACTTGAGTGACATTTCAA+AGG	+	Chr6:19096820-19096839	None:intergenic	30.0%
	AAGAAAATCAGCAAGGATAA+AGG	-	Chr6:19097060-19097079	MsG0680031368.01.T01:intron	30.0%
	AAGACTTGGAAATAAGCAAA+TGG	+	Chr6:19098687-19098706	None:intergenic	30.0%
	AAGTGTTTATGCTAGTAAAG+AGG	-	Chr6:19096769-19096788	MsG0680031368.01.T01:intron	30.0%
	AATGACTCTATACAGAACAA+AGG	+	Chr6:19097535-19097554	None:intergenic	30.0%
	AATGTGATTGAGGGAAATTA+CGG	+	Chr6:19097657-19097676	None:intergenic	30.0%
	ACTGAGAATGAACGAAATTA+GGG	+	Chr6:19095640-19095659	None:intergenic	30.0%
	AGTGTTTATGCTAGTAAAGA+GGG	-	Chr6:19096770-19096789	MsG0680031368.01.T01:intron	30.0%
	ATCAAATACTGAAGAAGACT+TGG	+	Chr6:19098701-19098720	None:intergenic	30.0%
	CAAACAAAATCCAGAATCAA+AGG	+	Chr6:19098587-19098606	None:intergenic	30.0%
	GATTATTCATAAGCCTGTTA+AGG	-	Chr6:19096130-19096149	MsG0680031368.01.T01:CDS	30.0%
	GTGCTATAGTAAGTTAAACA+AGG	+	Chr6:19097635-19097654	None:intergenic	30.0%
	TTGTTCTGTATAGAGTCATT+AGG	-	Chr6:19097535-19097554	MsG0680031368.01.T01:intron	30.0%
	TTTGTTTGATTGAACACAAC+AGG	+	Chr6:19098298-19098317	None:intergenic	30.0%
!	ATGAAGCATCATGCATATAA+TGG	+	Chr6:19098024-19098043	None:intergenic	30.0%
!	CCGTTTTCATAATCTATCTT+AGG	-	Chr6:19096658-19096677	MsG0680031368.01.T01:intron	30.0%
!	CTTTGATTCTGGATTTTGTT+TGG	-	Chr6:19098585-19098604	MsG0680031368.01.T01:intron	30.0%
!	TTGATTGATACAGGTGTTTT+TGG	-	Chr6:19098364-19098383	MsG0680031368.01.T01:intron	30.0%
!!	AGAACTAATGGATTAACATC+CGG	-	Chr6:19096197-19096216	MsG0680031368.01.T01:CDS	30.0%
!!	GTTGTTTTCTTAAGCCATTT+TGG	-	Chr6:19096336-19096355	MsG0680031368.01.T01:intron	30.0%
!!!	AGTTGTGAAATGTTTTGATC+TGG	-	Chr6:19095925-19095944	MsG0680031368.01.T01:CDS	30.0%
!!!	GCAGTTTTAAATCAAACTGT+AGG	-	Chr6:19097976-19097995	MsG0680031368.01.T01:intron	30.0%
	AAATAGTCTCACAAGTGCAT+AGG	-	Chr6:19096573-19096592	MsG0680031368.01.T01:intron	35.0%
	AAGAATAAGCCAATCCAAAC+CGG	-	Chr6:19096255-19096274	MsG0680031368.01.T01:CDS	35.0%
	AATCAGTTCTTCATCCAAAC+AGG	+	Chr6:19096012-19096031	None:intergenic	35.0%
	AATCCCTTCCTCAATCTATA+TGG	+	Chr6:19097438-19097457	None:intergenic	35.0%
	ACAGATTCCTCAAATTCAGT+TGG	+	Chr6:19097093-19097112	None:intergenic	35.0%
	ACTGAATTTGAGGAATCTGT+TGG	-	Chr6:19097093-19097112	MsG0680031368.01.T01:CDS	35.0%
	AGATAGTTTCCTGTAAACAG+CGG	+	Chr6:19098435-19098454	None:intergenic	35.0%
	ATCAAGGAAGAAAATCAGCA+AGG	-	Chr6:19097053-19097072	MsG0680031368.01.T01:intron	35.0%
	ATCAGTTCTTCATCCAAACA+GGG	+	Chr6:19096011-19096030	None:intergenic	35.0%
	ATCCCTTCCTCAATCTATAT+GGG	+	Chr6:19097437-19097456	None:intergenic	35.0%
	ATGAAAGAGACAACAATCGA+AGG	+	Chr6:19095742-19095761	None:intergenic	35.0%
	ATGCACTTGTGAGACTATTT+GGG	+	Chr6:19096573-19096592	None:intergenic	35.0%
	ATTCCAGTTACAGTTACCAT+CGG	+	Chr6:19097681-19097700	None:intergenic	35.0%
	CACTGAGAATGAACGAAATT+AGG	+	Chr6:19095641-19095660	None:intergenic	35.0%
	CTTCAGTATTTGATCTGGAA+TGG	-	Chr6:19098707-19098726	MsG0680031368.01.T01:five_prime_UTR	35.0%
	GAATGTCTCCAACTTGTATT+CGG	+	Chr6:19098411-19098430	None:intergenic	35.0%
	GATAACATCCTGCAAGTTAA+AGG	+	Chr6:19098066-19098085	None:intergenic	35.0%
	GATAGATTATGAAAACGGCT+TGG	+	Chr6:19096656-19096675	None:intergenic	35.0%
	GCATCATGCATATAATGGTA+TGG	+	Chr6:19098019-19098038	None:intergenic	35.0%
	GTCTTCTTCAGTATTTGATC+TGG	-	Chr6:19098702-19098721	MsG0680031368.01.T01:five_prime_UTR	35.0%
	GTTTGAAGATGTTCACATCA+AGG	-	Chr6:19097037-19097056	MsG0680031368.01.T01:intron	35.0%
	TATGCACTTGTGAGACTATT+TGG	+	Chr6:19096574-19096593	None:intergenic	35.0%
	TCAAATAAGCCAATCCAAAC+AGG	-	Chr6:19096793-19096812	MsG0680031368.01.T01:intron	35.0%
	TCAGCGAGAATTACTATCAA+CGG	+	Chr6:19097918-19097937	None:intergenic	35.0%
	TCATCTTGTATTATATGGGC+CGG	+	Chr6:19096277-19096296	None:intergenic	35.0%
	TTTCGTAATTGGATCCAGTT+AGG	-	Chr6:19095985-19096004	MsG0680031368.01.T01:CDS	35.0%
!	AACACAACAGGAGTAACTTT+TGG	+	Chr6:19098286-19098305	None:intergenic	35.0%
!	TGATGGATCAAAGATCATGA+AGG	-	Chr6:19098238-19098257	MsG0680031368.01.T01:intron	35.0%
!	TTGATTTTCTCCTCAGTATG+AGG	-	Chr6:19097944-19097963	MsG0680031368.01.T01:intron	35.0%
!	TTTTGTCACACTACAGTTTC+TGG	-	Chr6:19097559-19097578	MsG0680031368.01.T01:intron	35.0%
!!	CTAATGAACCTTTAACTTGC+AGG	-	Chr6:19098055-19098074	MsG0680031368.01.T01:intron	35.0%
!!	GATTTTGTTTGGTGACTTTC+AGG	-	Chr6:19098596-19098615	MsG0680031368.01.T01:intron	35.0%
!!	GTTTTCTTAAGCCATTTTGG+CGG	-	Chr6:19096339-19096358	MsG0680031368.01.T01:intron	35.0%
!!!	CTTGTGGTTTTGATTGATAC+AGG	-	Chr6:19098355-19098374	MsG0680031368.01.T01:intron	35.0%
	ATTGTTCGTCCACCAAAGAA+AGG	-	Chr6:19098104-19098123	MsG0680031368.01.T01:intron	40.0%
	ATTTGAGGAATCTGTTGGAC+AGG	-	Chr6:19097098-19097117	MsG0680031368.01.T01:CDS	40.0%
	CGACTTCTGACTTTGCATAT+AGG	-	Chr6:19097015-19097034	MsG0680031368.01.T01:intron	40.0%
	CTTCGAATAACCTCATACTG+AGG	+	Chr6:19097957-19097976	None:intergenic	40.0%
	CTTCGATTTCGTTTCTGCAA+AGG	-	Chr6:19095707-19095726	MsG0680031368.01.T01:three_prime_UTR	40.0%
	CTTTGCAGAAACGAAATCGA+AGG	+	Chr6:19095709-19095728	None:intergenic	40.0%
	GACATTTCAAAGGACCTGTT+TGG	+	Chr6:19096810-19096829	None:intergenic	40.0%
	GAGCTCGAGAAGAAATTTAG+CGG	-	Chr6:19097486-19097505	MsG0680031368.01.T01:intron	40.0%
	GCTGTTTACAGGAAACTATC+TGG	-	Chr6:19098434-19098453	MsG0680031368.01.T01:intron	40.0%
	GTCCCATATAGATTGAGGAA+GGG	-	Chr6:19097432-19097451	MsG0680031368.01.T01:intron	40.0%
	GTGCAATTGTGAGACTGTTT+GGG	+	Chr6:19096424-19096443	None:intergenic	40.0%
	TCCATGTCCCATATAGATTG+AGG	-	Chr6:19097427-19097446	MsG0680031368.01.T01:intron	40.0%
	TCCTCAATCTATATGGGACA+TGG	+	Chr6:19097431-19097450	None:intergenic	40.0%
	TGATCTTTGATCCATCAACG+CGG	+	Chr6:19098235-19098254	None:intergenic	40.0%
	TGTCCCATATAGATTGAGGA+AGG	-	Chr6:19097431-19097450	MsG0680031368.01.T01:intron	40.0%
	TGTGCAATTGTGAGACTGTT+TGG	+	Chr6:19096425-19096444	None:intergenic	40.0%
	TTCAAAGGACCTGTTTGGAT+TGG	+	Chr6:19096805-19096824	None:intergenic	40.0%
	TTCCAGTTACAGTTACCATC+GGG	+	Chr6:19097680-19097699	None:intergenic	40.0%
	TTGTATTATATGGGCCGGTT+TGG	+	Chr6:19096272-19096291	None:intergenic	40.0%
	TTTGGGAGAACTTAGTGCAT+AGG	+	Chr6:19096556-19096575	None:intergenic	40.0%
!	AAATCCATGTCAGGCTTGTT+AGG	-	Chr6:19097463-19097482	MsG0680031368.01.T01:intron	40.0%
!	ACAGGAGTAACTTTTGGATG+TGG	+	Chr6:19098280-19098299	None:intergenic	40.0%
!	AGTTTTCCTGAACAGTCTCT+CGG	-	Chr6:19096746-19096765	MsG0680031368.01.T01:intron	40.0%
!	ATTTTCGTAAGCCGCCAAAA+TGG	+	Chr6:19096353-19096372	None:intergenic	40.0%
!	CGGTATTGTTTCTCTCCTTT+GGG	+	Chr6:19098391-19098410	None:intergenic	40.0%
!	TCGGTATTGTTTCTCTCCTT+TGG	+	Chr6:19098392-19098411	None:intergenic	40.0%
!!	AATCCATGTCAGGCTTGTTA+GGG	-	Chr6:19097464-19097483	MsG0680031368.01.T01:intron	40.0%
!!	ATCGACTTGGCTGTAGATTA+TGG	+	Chr6:19097379-19097398	None:intergenic	40.0%
!!	GTTCAAGTTGCCTTTGATTC+TGG	-	Chr6:19098574-19098593	MsG0680031368.01.T01:intron	40.0%
	ACCATCGGGAATGTGATTGA+GGG	+	Chr6:19097666-19097685	None:intergenic	45.0%
	ACTGAGGCTTAGGTTCACTT+AGG	-	Chr6:19098485-19098504	MsG0680031368.01.T01:intron	45.0%
	AGACATTCTCCGCTGTTTAC+AGG	-	Chr6:19098423-19098442	MsG0680031368.01.T01:intron	45.0%
	ATGTTATCCTGATTGCCACC+AGG	-	Chr6:19098078-19098097	MsG0680031368.01.T01:intron	45.0%
	CGAGAAGAAATTTAGCGGCA+AGG	-	Chr6:19097491-19097510	MsG0680031368.01.T01:intron	45.0%
	GATTCCGCAAAATCCATGTC+AGG	-	Chr6:19097454-19097473	MsG0680031368.01.T01:intron	45.0%
	GTGAACCTAAGCCTCAGTAA+CGG	+	Chr6:19098483-19098502	None:intergenic	45.0%
	GTTTGAGTATCCCGTTACTG+AGG	-	Chr6:19098469-19098488	MsG0680031368.01.T01:intron	45.0%
	TACAGCCAAGTCGATGTTTC+TGG	-	Chr6:19097384-19097403	MsG0680031368.01.T01:intron	45.0%
	TACCATCGGGAATGTGATTG+AGG	+	Chr6:19097667-19097686	None:intergenic	45.0%
	TGAACCTAAGCCTCAGTAAC+GGG	+	Chr6:19098482-19098501	None:intergenic	45.0%
	TGCTGAGCCAACTGAATTTG+AGG	-	Chr6:19097083-19097102	MsG0680031368.01.T01:intron	45.0%
	TGTCCAACACAGTGCTTAGA+CGG	-	Chr6:19097830-19097849	MsG0680031368.01.T01:intron	45.0%
	TTCCCGATGGTAACTGTAAC+TGG	-	Chr6:19097675-19097694	MsG0680031368.01.T01:intron	45.0%
!	CAAGCCTGACATGGATTTTG+CGG	+	Chr6:19097461-19097480	None:intergenic	45.0%
!	TAACCGTCTAAGCACTGTGT+TGG	+	Chr6:19097836-19097855	None:intergenic	45.0%
!!	TGAGCTCACTTTTCAGCTCA+TGG	+	Chr6:19097252-19097271	None:intergenic	45.0%
!!	TTATATGGGCCGGTTTGGAT+TGG	+	Chr6:19096267-19096286	None:intergenic	45.0%
!!!	ACAGGTGTTTTTGGACCCAA+AGG	-	Chr6:19098373-19098392	MsG0680031368.01.T01:intron	45.0%
!!!	TTTGAAATATTATTTATTAT+AGG	-	Chr6:19098655-19098674	MsG0680031368.01.T01:intron	5.0%
	AAGTCAATCCAAACAGGCCC+TGG	+	Chr6:19096075-19096094	None:intergenic	50.0%
	ACACTTCCGAGAGACTGTTC+AGG	+	Chr6:19096755-19096774	None:intergenic	50.0%
	AGATTGTTGGCAAGCGCACT+AGG	-	Chr6:19098207-19098226	MsG0680031368.01.T01:intron	50.0%
	AGCAGTAAGTGTACGGCTAC+GGG	+	Chr6:19098147-19098166	None:intergenic	50.0%
	AGTGCGCTTGCCAACAATCT+CGG	+	Chr6:19098207-19098226	None:intergenic	50.0%
	CAGCAGTAAGTGTACGGCTA+CGG	+	Chr6:19098148-19098167	None:intergenic	50.0%
	CATGGATAACCACAGCCTTG+CGG	+	Chr6:19097413-19097432	None:intergenic	50.0%
	CGTGGACAGCAGTAAGTGTA+CGG	+	Chr6:19098154-19098173	None:intergenic	50.0%
	CTACATTTCCAGGGCCTGTT+TGG	-	Chr6:19096064-19096083	MsG0680031368.01.T01:intron	50.0%
	GCACTGTGTTGGACATCAGA+AGG	+	Chr6:19097825-19097844	None:intergenic	50.0%
	GTATCCCGTTACTGAGGCTT+AGG	-	Chr6:19098475-19098494	MsG0680031368.01.T01:intron	50.0%
	GTGTTACCTGCCGAGATTGT+TGG	-	Chr6:19098194-19098213	MsG0680031368.01.T01:intron	50.0%
	TACACTTACTGCTGTCCACG+AGG	-	Chr6:19098154-19098173	MsG0680031368.01.T01:intron	50.0%
	TCATCCAAACAGGGCCTAAC+TGG	+	Chr6:19096002-19096021	None:intergenic	50.0%
	TCCCTCAATCACATTCCCGA+TGG	-	Chr6:19097662-19097681	MsG0680031368.01.T01:intron	50.0%
	TCTCTCACTCTCTCTCTCTG+CGG	-	Chr6:19095669-19095688	MsG0680031368.01.T01:three_prime_UTR	50.0%
	TGAGCAGCGGAACCTTTCTT+TGG	+	Chr6:19098119-19098138	None:intergenic	50.0%
	TTATCCTGATTGCCACCAGG+AGG	-	Chr6:19098081-19098100	MsG0680031368.01.T01:intron	50.0%
!	GGTTGCCAGAAACATCGACT+TGG	+	Chr6:19097392-19097411	None:intergenic	50.0%
	CAATCCTCCTGGTGGCAATC+AGG	+	Chr6:19098088-19098107	None:intergenic	55.0%
	CAGTAAGTGTACGGCTACGG+GGG	+	Chr6:19098145-19098164	None:intergenic	55.0%
	GCAGCGGAACCTTTCTTTGG+TGG	+	Chr6:19098116-19098135	None:intergenic	55.0%
	GCAGTAAGTGTACGGCTACG+GGG	+	Chr6:19098146-19098165	None:intergenic	55.0%
	GCTCCCTAACAAGCCTGACA+TGG	+	Chr6:19097470-19097489	None:intergenic	55.0%
	GGATCCAGTTAGGCCCTGTT+TGG	-	Chr6:19095995-19096014	MsG0680031368.01.T01:intron	55.0%
	TGGACGAACAATCCTCCTGG+TGG	+	Chr6:19098096-19098115	None:intergenic	55.0%
!	TGGTGGACGAACAATCCTCC+TGG	+	Chr6:19098099-19098118	None:intergenic	55.0%
!!	CGATGTTTCTGGCAACCGCA+AGG	-	Chr6:19097395-19097414	MsG0680031368.01.T01:intron	55.0%
	CGCTTGCCAACAATCTCGGC+AGG	+	Chr6:19098203-19098222	None:intergenic	60.0%
	TGTCCACGAGGCAATGCTCG+AGG	-	Chr6:19098166-19098185	MsG0680031368.01.T01:intron	60.0%
	TTCTGGCAACCGCAAGGCTG+TGG	-	Chr6:19097401-19097420	MsG0680031368.01.T01:intron	60.0%
!	CATCCTCGAGCATTGCCTCG+TGG	+	Chr6:19098172-19098191	None:intergenic	60.0%
!	CGCACTAGGTACCGCGTTGA+TGG	-	Chr6:19098221-19098240	MsG0680031368.01.T01:intron	60.0%
!!	GCTACGGGGGCGCTGAGCAG+CGG	+	Chr6:19098132-19098151	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	19095632	19098756	19095632	ID=MsG0680031368.01;Name=MsG0680031368.01
Chr6	mRNA	19095632	19098756	19095632	ID=MsG0680031368.01.T01;Parent=MsG0680031368.01;Name=MsG0680031368.01.T01;_AED=0.48;_eAED=0.48;_QI=105\|1\|1\|1\|0.8\|0.66\|6\|260\|191
Chr6	exon	19095632	19096011	19095632	ID=MsG0680031368.01.T01:exon:12686;Parent=MsG0680031368.01.T01
Chr6	exon	19096129	19096311	19096129	ID=MsG0680031368.01.T01:exon:12685;Parent=MsG0680031368.01.T01
Chr6	exon	19096876	19096999	19096876	ID=MsG0680031368.01.T01:exon:12684;Parent=MsG0680031368.01.T01
Chr6	exon	19097092	19097165	19097092	ID=MsG0680031368.01.T01:exon:12683;Parent=MsG0680031368.01.T01
Chr6	exon	19097269	19097351	19097269	ID=MsG0680031368.01.T01:exon:12682;Parent=MsG0680031368.01.T01
Chr6	exon	19098660	19098756	19098660	ID=MsG0680031368.01.T01:exon:12681;Parent=MsG0680031368.01.T01
Chr6	five_prime_UTR	19098660	19098756	19098660	ID=MsG0680031368.01.T01:five_prime_utr;Parent=MsG0680031368.01.T01
Chr6	five_prime_UTR	19097344	19097351	19097344	ID=MsG0680031368.01.T01:five_prime_utr;Parent=MsG0680031368.01.T01
Chr6	CDS	19097269	19097343	19097269	ID=MsG0680031368.01.T01:cds;Parent=MsG0680031368.01.T01
Chr6	CDS	19097092	19097165	19097092	ID=MsG0680031368.01.T01:cds;Parent=MsG0680031368.01.T01
Chr6	CDS	19096876	19096999	19096876	ID=MsG0680031368.01.T01:cds;Parent=MsG0680031368.01.T01
Chr6	CDS	19096129	19096311	19096129	ID=MsG0680031368.01.T01:cds;Parent=MsG0680031368.01.T01
Chr6	CDS	19095892	19096011	19095892	ID=MsG0680031368.01.T01:cds;Parent=MsG0680031368.01.T01
Chr6	three_prime_UTR	19095632	19095891	19095632	ID=MsG0680031368.01.T01:three_prime_utr;Parent=MsG0680031368.01.T01

Gene Sequence

>MsG0680031368.01.T01

ATGTTCACATCAAGGAAGAAAATCAGCAAGGATAAAGGTGCTGAGCCAACTGAATTTGAGGAATCTGTTGGACAGGCTTTGTTTGATCTCGAAAACACTAACCATGAGCTGAAAAGTGAGCTCAAAGATTTATACATTAATTCAGCAGTCCAAGTCGATGTTTCTGGCAACCGCAAGGCTGTGGTTATCCATGTCCCATATAGATTGAGGAAGGGATTCCGCAAAATCCATGTCAGGCTTGTTAGGGAGCTCGAGAAGAAATTTAGCGGCAAGGATGTTATCCTGATTGCCACCAGGAGGATTGTTCGTCCACCAAAGAAAGGTTCCGCTGCTCAGCGCCCCCGTAGCCGTACACTTACTGCTGTCCACGAGGCAATGCTCGAGGATGTTGTGTTACCTGCCGAGATTGTTGGCAAGCGCACTAGGTACCGCGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGAGAAACAATACCGAATACAAGTTGGAGACATTCTCCGCTGTTTACAGGAAACTATCTGGCAAAGATGTTGTGTTTGAGTATCCCGTTACTGAGGCTTAG

Protein sequence

>MsG0680031368.01.T01

MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA*