Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018164.01.T01 | GAU42604.1 | 93.464 | 153 | 10 | 0 | 26 | 178 | 1 | 153 | 1.17E-98 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018164.01.T01 | Q9XHS0 | 75.556 | 135 | 32 | 1 | 44 | 178 | 10 | 143 | 7.60E-69 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018164.01.T01 | A0A2Z6ND38 | 93.464 | 153 | 10 | 0 | 26 | 178 | 1 | 153 | 5.59e-99 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0480018164.01 | 0.861645 | 8.870466e-64 | 2.527097e-60 |
| MsG0080048922.01 | MsG0480018164.01 | 0.822024 | 2.955769e-53 | 2.444744e-50 |
| MsG0180000096.01 | MsG0480018164.01 | 0.891377 | 4.200124e-74 | 3.673481e-70 |
| MsG0180000118.01 | MsG0480018164.01 | 0.921072 | 5.712247e-88 | 2.001414e-83 |
| MsG0180001169.01 | MsG0480018164.01 | 0.860301 | 2.272323e-63 | 6.181921e-60 |
| MsG0180001829.01 | MsG0480018164.01 | 0.876543 | 1.284466e-68 | 6.251093e-65 |
| MsG0180002738.01 | MsG0480018164.01 | 0.814059 | 1.868322e-51 | 1.240796e-48 |
| MsG0180003585.01 | MsG0480018164.01 | 0.832432 | 9.486546e-56 | 1.060098e-52 |
| MsG0180003897.01 | MsG0480018164.01 | 0.916958 | 9.513126e-86 | 2.680629e-81 |
| MsG0180004503.01 | MsG0480018164.01 | 0.837069 | 6.459856e-57 | 8.296550e-54 |
| MsG0180004829.01 | MsG0480018164.01 | 0.925514 | 1.654090e-90 | 7.406282e-86 |
| MsG0180005384.01 | MsG0480018164.01 | 0.942287 | 9.392582e-102 | 1.165420e-96 |
| MsG0180005573.01 | MsG0480018164.01 | 0.873025 | 2.023150e-67 | 8.648529e-64 |
| MsG0180005789.01 | MsG0480018164.01 | 0.811382 | 7.198033e-51 | 4.449022e-48 |
| MsG0280006301.01 | MsG0480018164.01 | 0.844885 | 5.728585e-59 | 9.379131e-56 |
| MsG0280011308.01 | MsG0480018164.01 | 0.807429 | 5.076788e-50 | 2.827046e-47 |
| MsG0380012367.01 | MsG0480018164.01 | 0.801809 | 7.555695e-49 | 3.642412e-46 |
| MsG0380014507.01 | MsG0480018164.01 | 0.847689 | 9.865952e-60 | 1.767867e-56 |
| MsG0380015446.01 | MsG0480018164.01 | 0.826475 | 2.658919e-54 | 2.496053e-51 |
| MsG0380015494.01 | MsG0480018164.01 | 0.807086 | 6.000343e-50 | 3.311559e-47 |
| MsG0380015766.01 | MsG0480018164.01 | 0.833171 | 6.215673e-56 | 7.101443e-53 |
| MsG0380015857.01 | MsG0480018164.01 | 0.945743 | 1.723700e-104 | 2.695696e-99 |
| MsG0380016607.01 | MsG0480018164.01 | 0.807245 | 5.553532e-50 | 3.077837e-47 |
| MsG0380016678.01 | MsG0480018164.01 | 0.879753 | 9.629674e-70 | 5.284265e-66 |
| MsG0380016732.01 | MsG0480018164.01 | 0.824467 | 7.945859e-54 | 7.043544e-51 |
| MsG0380016744.01 | MsG0480018164.01 | 0.866320 | 3.107996e-65 | 1.043192e-61 |
| MsG0380016760.01 | MsG0480018164.01 | 0.880925 | 3.673506e-70 | 2.109837e-66 |
| MsG0380017496.01 | MsG0480018164.01 | 0.800437 | 1.442202e-48 | 6.715080e-46 |
| MsG0380017516.01 | MsG0480018164.01 | 0.813099 | 3.037963e-51 | 1.965546e-48 |
| MsG0380018056.01 | MsG0480018164.01 | 0.851768 | 7.155774e-61 | 1.463673e-57 |
| MsG0480018164.01 | MsG0480019165.01 | 0.919159 | 6.373762e-87 | 2.016783e-82 |
| MsG0480018164.01 | MsG0480019632.01 | 0.820201 | 7.772393e-53 | 6.109775e-50 |
| MsG0480018164.01 | MsG0480020796.01 | 0.928770 | 1.803187e-92 | 9.705141e-88 |
| MsG0480018164.01 | MsG0480020895.01 | 0.821422 | 4.072897e-53 | 3.312090e-50 |
| MsG0480018164.01 | MsG0480020911.01 | 0.909832 | 3.681888e-82 | 7.301138e-78 |
| MsG0480018164.01 | MsG0480021247.01 | 0.829368 | 5.354553e-55 | 5.469486e-52 |
| MsG0480018164.01 | MsG0480021279.01 | 0.910092 | 2.755073e-82 | 5.534304e-78 |
| MsG0480018164.01 | MsG0480021293.01 | 0.838696 | 2.466330e-57 | 3.329597e-54 |
| MsG0480018164.01 | MsG0480021417.01 | 0.903610 | 2.903535e-79 | 4.330065e-75 |
| MsG0480018164.01 | MsG0480022006.01 | 0.911478 | 5.812991e-83 | 1.247815e-78 |
| MsG0480018164.01 | MsG0480022038.01 | 0.817123 | 3.881989e-52 | 2.802708e-49 |
| MsG0480018164.01 | MsG0480022041.01 | 0.886066 | 4.725614e-72 | 3.324368e-68 |
| MsG0480018164.01 | MsG0480022302.01 | 0.811507 | 6.762889e-51 | 4.194062e-48 |
| MsG0480018164.01 | MsG0480022363.01 | 0.866757 | 2.257443e-65 | 7.695559e-62 |
| MsG0480018164.01 | MsG0480022789.01 | 0.836291 | 1.020047e-56 | 1.279999e-53 |
| MsG0480018164.01 | MsG0480022955.01 | 0.888887 | 3.961785e-73 | 3.125964e-69 |
| MsG0480018164.01 | MsG0480023380.01 | 0.919173 | 6.264740e-87 | 1.983856e-82 |
| MsG0480018164.01 | MsG0480023774.01 | 0.927183 | 1.675034e-91 | 8.246918e-87 |
| MsG0480018164.01 | MsG0480023931.01 | 0.849013 | 4.246364e-60 | 7.941009e-57 |
| MsG0480018164.01 | MsG0480023941.01 | 0.855665 | 5.416894e-62 | 1.260104e-58 |
| MsG0480018164.01 | MsG0480023996.01 | 0.863142 | 3.073361e-64 | 9.221554e-61 |
| MsG0480018164.01 | MsG0580024059.01 | 0.845064 | 5.125899e-59 | 8.440764e-56 |
| MsG0480018164.01 | MsG0580024481.01 | 0.897445 | 1.396597e-76 | 1.578095e-72 |
| MsG0480018164.01 | MsG0580024540.01 | 0.928280 | 3.607934e-92 | 1.882838e-87 |
| MsG0480018164.01 | MsG0580024738.01 | 0.890036 | 1.416471e-73 | 1.171166e-69 |
| MsG0480018164.01 | MsG0580024894.01 | 0.896557 | 3.290510e-76 | 3.578480e-72 |
| MsG0480018164.01 | MsG0580025750.01 | 0.851350 | 9.399906e-61 | 1.897367e-57 |
| MsG0480018164.01 | MsG0580026749.01 | 0.842774 | 2.105272e-58 | 3.225558e-55 |
| MsG0480018164.01 | MsG0580030073.01 | 0.808984 | 2.367716e-50 | 1.373344e-47 |
| MsG0480018164.01 | MsG0680031368.01 | 0.911259 | 7.447743e-83 | 1.581997e-78 |
| MsG0480018164.01 | MsG0680032459.01 | 0.822374 | 2.451614e-53 | 2.048408e-50 |
| MsG0480018164.01 | MsG0680035611.01 | 0.879655 | 1.043555e-69 | 5.704343e-66 |
| MsG0480018164.01 | MsG0780037290.01 | 0.858937 | 5.844961e-63 | 1.517277e-59 |
| MsG0480018164.01 | MsG0780038383.01 | 0.867487 | 1.319496e-65 | 4.615133e-62 |
| MsG0480018164.01 | MsG0780039937.01 | 0.815365 | 9.597366e-52 | 6.603605e-49 |
| MsG0480018164.01 | MsG0780041058.01 | 0.833522 | 5.080401e-56 | 5.865683e-53 |
| MsG0480018164.01 | MsG0780041153.01 | 0.815163 | 1.063991e-51 | 7.280218e-49 |
| MsG0480018164.01 | MsG0780041240.01 | 0.853754 | 1.938222e-61 | 4.232101e-58 |
| MsG0480018164.01 | MsG0780041244.01 | 0.802687 | 4.984133e-49 | 2.457004e-46 |
| MsG0480018164.01 | MsG0780041311.01 | 0.835888 | 1.291046e-56 | 1.600167e-53 |
| MsG0480018164.01 | MsG0780041461.01 | 0.815995 | 6.947713e-52 | 4.863675e-49 |
| MsG0480018164.01 | MsG0780041522.01 | 0.892432 | 1.595696e-74 | 1.458435e-70 |
| MsG0480018164.01 | MsG0780041790.01 | 0.879825 | 9.079993e-70 | 4.997068e-66 |
| MsG0480018164.01 | MsG0880041941.01 | 0.884689 | 1.547006e-71 | 1.030641e-67 |
| MsG0480018164.01 | MsG0880042517.01 | 0.897793 | 9.963946e-77 | 1.143869e-72 |
| MsG0480018164.01 | MsG0880042896.01 | 0.862689 | 4.241943e-64 | 1.253146e-60 |
| MsG0480018164.01 | MsG0880043076.01 | 0.880412 | 5.607692e-70 | 3.156501e-66 |
| MsG0480018164.01 | MsG0880044204.01 | 0.848177 | 7.239113e-60 | 1.317200e-56 |
| MsG0480018164.01 | MsG0880045836.01 | 0.865162 | 7.211485e-65 | 2.323414e-61 |
| MsG0480018164.01 | MsG0880046220.01 | 0.893208 | 7.783636e-75 | 7.348122e-71 |
| MsG0480018164.01 | MsG0880046236.01 | 0.809482 | 1.851509e-50 | 1.088326e-47 |
| MsG0480018164.01 | MsG0880046486.01 | 0.817284 | 3.571077e-52 | 2.589628e-49 |
| MsG0480018164.01 | MsG0880047310.01 | 0.852246 | 5.237079e-61 | 1.087596e-57 |
| MsG0480018164.01 | MsG0880047779.01 | 0.804154 | 2.474811e-49 | 1.266765e-46 |
| MsG0280006629.01 | MsG0480018164.01 | 0.895076 | 1.350957e-75 | 1.380228e-71 |
| MsG0280006747.01 | MsG0480018164.01 | 0.910697 | 1.401593e-82 | 2.898289e-78 |
| MsG0280006760.01 | MsG0480018164.01 | 0.853382 | 2.480356e-61 | 5.349189e-58 |
| MsG0280006841.01 | MsG0480018164.01 | 0.813882 | 2.043308e-51 | 1.350544e-48 |
| MsG0280007055.01 | MsG0480018164.01 | 0.965418 | 1.406431e-124 | 8.902518e-119 |
| MsG0280007084.01 | MsG0480018164.01 | 0.809794 | 1.586388e-50 | 9.402940e-48 |
| MsG0280007995.01 | MsG0480018164.01 | 0.838005 | 3.717984e-57 | 4.914866e-54 |
| MsG0280010232.01 | MsG0480018164.01 | 0.800925 | 1.146412e-48 | 5.404562e-46 |
| MsG0280010519.01 | MsG0480018164.01 | 0.833210 | 6.078075e-56 | 6.952314e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480018164.01 | MsG0580024540.01 | PPI |
| MsG0180001832.01 | MsG0480018164.01 | PPI |
| MsG0380016379.01 | MsG0480018164.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018164.01.T01 | MTR_4g006830 | 97.222 | 144 | 4 | 0 | 35 | 178 | 1 | 144 | 7.68e-100 | 284 |
| MsG0480018164.01.T01 | MTR_5g012890 | 96.000 | 125 | 5 | 0 | 54 | 178 | 18 | 142 | 4.59e-85 | 247 |
| MsG0480018164.01.T01 | MTR_8g093770 | 92.063 | 126 | 10 | 0 | 53 | 178 | 18 | 143 | 7.43e-83 | 241 |
| MsG0480018164.01.T01 | MTR_5g012890 | 91.111 | 90 | 8 | 0 | 54 | 143 | 18 | 107 | 1.92e-55 | 171 |
| MsG0480018164.01.T01 | MTR_4g073510 | 70.370 | 54 | 16 | 0 | 35 | 88 | 1 | 54 | 1.97e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018164.01.T01 | AT2G32060 | 72.800 | 125 | 33 | 1 | 54 | 178 | 21 | 144 | 1.00e-63 | 193 |
| MsG0480018164.01.T01 | AT2G32060 | 72.800 | 125 | 33 | 1 | 54 | 178 | 21 | 144 | 1.00e-63 | 193 |
| MsG0480018164.01.T01 | AT2G32060 | 72.800 | 125 | 33 | 1 | 54 | 178 | 21 | 144 | 1.00e-63 | 193 |
| MsG0480018164.01.T01 | AT1G15930 | 74.400 | 125 | 31 | 1 | 54 | 178 | 21 | 144 | 1.10e-62 | 190 |
| MsG0480018164.01.T01 | AT1G15930 | 74.400 | 125 | 31 | 1 | 54 | 178 | 21 | 144 | 1.10e-62 | 190 |
Find 47 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4:+1093874 | MsG0480018164.01.T01:intron |
| ACAAAAGTGATTAACTAAAT+TGG | 0.262326 | 4:-1094094 | None:intergenic |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4:+1093090 | MsG0480018164.01.T01:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4:+1093099 | MsG0480018164.01.T01:CDS |
| TCTAAGTAACAATTCATCTA+TGG | 0.290775 | 4:+1093011 | MsG0480018164.01.T01:CDS |
| CTTGTGTTGTTCTGTATGTT+TGG | 0.319265 | 4:+1092964 | MsG0480018164.01.T01:CDS |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4:-1093090 | None:intergenic |
| TATTGAATAATTCAAATCCT+TGG | 0.359044 | 4:-1094039 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4:-1093102 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4:-1093117 | None:intergenic |
| ATTGAATAATTCAAATCCTT+GGG | 0.424875 | 4:-1094038 | None:intergenic |
| TGCAAAGACACTTGGAGAAT+GGG | 0.435359 | 4:+1093338 | MsG0480018164.01.T01:CDS |
| GTTGTTCTGTATGTTTGGTC+TGG | 0.443984 | 4:+1092969 | MsG0480018164.01.T01:CDS |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4:-1093270 | None:intergenic |
| GTGCAAAGACACTTGGAGAA+TGG | 0.453891 | 4:+1093337 | MsG0480018164.01.T01:CDS |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4:+1093779 | MsG0480018164.01.T01:CDS |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4:-1093911 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4:+1093142 | MsG0480018164.01.T01:CDS |
| TAGTTGGTGTTATCTTCCCA+AGG | 0.498568 | 4:+1094022 | MsG0480018164.01.T01:three_prime_UTR |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4:+1093756 | MsG0480018164.01.T01:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4:-1093101 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4:+1093186 | MsG0480018164.01.T01:CDS |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4:+1093159 | MsG0480018164.01.T01:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4:-1093097 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4:-1093100 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4:-1093266 | None:intergenic |
| GTTCCTAGTGCAAAGACACT+TGG | 0.547315 | 4:+1093330 | MsG0480018164.01.T01:CDS |
| TCTCCAAGTGTCTTTGCACT+AGG | 0.553750 | 4:-1093333 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4:+1093162 | MsG0480018164.01.T01:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4:+1093773 | MsG0480018164.01.T01:CDS |
| AGAAGCAAAATTCATTCTCA+AGG | 0.566617 | 4:-1094000 | None:intergenic |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4:-1093126 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4:+1093152 | MsG0480018164.01.T01:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4:+1093749 | MsG0480018164.01.T01:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4:+1093110 | MsG0480018164.01.T01:CDS |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4:-1093145 | None:intergenic |
| AAGACACTTGGAGAATGGGC+CGG | 0.606076 | 4:+1093342 | MsG0480018164.01.T01:CDS |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4:+1093272 | MsG0480018164.01.T01:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4:+1093174 | MsG0480018164.01.T01:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4:+1093163 | MsG0480018164.01.T01:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4:+1093745 | MsG0480018164.01.T01:CDS |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4:+1093770 | MsG0480018164.01.T01:CDS |
| ATACAGAACAACACAAGACA+CGG | 0.647902 | 4:-1092958 | None:intergenic |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4:+1093213 | MsG0480018164.01.T01:CDS |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4:+1093735 | MsG0480018164.01.T01:CDS |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4:+1093734 | MsG0480018164.01.T01:intron |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4:-1093784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTATTAATTATTGT+TGG | + | Chr4:1093698-1093717 | MsG0480018164.01.T01:intron | 10.0% |
| !!! | TTGTAATGTGTTTTTATTAT+TGG | - | Chr4:1093534-1093553 | None:intergenic | 15.0% |
| !! | AACACATTACAAAAAATGAA+TGG | + | Chr4:1093542-1093561 | MsG0480018164.01.T01:intron | 20.0% |
| !! | ACAAAAGTGATTAACTAAAT+TGG | - | Chr4:1094097-1094116 | None:intergenic | 20.0% |
| !! | ACACATTACAAAAAATGAAT+GGG | + | Chr4:1093543-1093562 | MsG0480018164.01.T01:intron | 20.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | - | Chr4:1093492-1093511 | None:intergenic | 20.0% |
| !! | ATTGAATAATTCAAATCCTT+GGG | - | Chr4:1094041-1094060 | None:intergenic | 20.0% |
| !! | TATTGAATAATTCAAATCCT+TGG | - | Chr4:1094042-1094061 | None:intergenic | 20.0% |
| !! | TATTTACTTGTTTATGCATT+GGG | + | Chr4:1093424-1093443 | MsG0480018164.01.T01:intron | 20.0% |
| !! | TTATTTACTTGTTTATGCAT+TGG | + | Chr4:1093423-1093442 | MsG0480018164.01.T01:intron | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | - | Chr4:1093643-1093662 | None:intergenic | 20.0% |
| !!! | TTTCTTTCATTTTCATTATG+TGG | + | Chr4:1093973-1093992 | MsG0480018164.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | + | Chr4:1093825-1093844 | MsG0480018164.01.T01:intron | 20.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | + | Chr4:1093581-1093600 | MsG0480018164.01.T01:intron | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | + | Chr4:1093011-1093030 | MsG0480018164.01.T01:CDS | 25.0% |
| ! | TGAAAGAAAAACACAATGTA+TGG | - | Chr4:1093962-1093981 | None:intergenic | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | - | Chr4:1093635-1093654 | None:intergenic | 25.0% |
| !! | TTAACGGATATCACATTTAT+TGG | + | Chr4:1093382-1093401 | MsG0480018164.01.T01:intron | 25.0% |
| !!! | GTAAGTCTTCTGAAATTTAA+CGG | + | Chr4:1093366-1093385 | MsG0480018164.01.T01:intron | 25.0% |
| AAAGTAATTGAGAAGAACAC+AGG | + | Chr4:1093213-1093232 | MsG0480018164.01.T01:CDS | 30.0% | |
| AAATTTCAGAAGACTTACAC+CGG | - | Chr4:1093364-1093383 | None:intergenic | 30.0% | |
| AGAAGCAAAATTCATTCTCA+AGG | - | Chr4:1094003-1094022 | None:intergenic | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | + | Chr4:1093547-1093566 | MsG0480018164.01.T01:intron | 30.0% | |
| ! | CAATATGATTTTGCTACTCT+CGG | + | Chr4:1094057-1094076 | MsG0480018164.01.T01:three_prime_UTR | 30.0% |
| ! | GAATGAATTTTGCTTCTAGT+TGG | + | Chr4:1094006-1094025 | MsG0480018164.01.T01:three_prime_UTR | 30.0% |
| ATACAGAACAACACAAGACA+CGG | - | Chr4:1092961-1092980 | None:intergenic | 35.0% | |
| CACATTCAACAGTTAAAACC+AGG | - | Chr4:1093858-1093877 | None:intergenic | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | + | Chr4:1093436-1093455 | MsG0480018164.01.T01:intron | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | + | Chr4:1093272-1093291 | MsG0480018164.01.T01:CDS | 35.0% | |
| TTGACGAGTTTAACATAGTC+AGG | - | Chr4:1093273-1093292 | None:intergenic | 35.0% | |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | + | Chr4:1092964-1092983 | MsG0480018164.01.T01:CDS | 35.0% |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | - | Chr4:1093632-1093651 | None:intergenic | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | - | Chr4:1093203-1093222 | None:intergenic | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | + | Chr4:1093047-1093066 | MsG0480018164.01.T01:CDS | 35.0% |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | + | Chr4:1093856-1093875 | MsG0480018164.01.T01:intron | 35.0% |
| AAGGCAGTCATGATATCCAT+TGG | - | Chr4:1093129-1093148 | None:intergenic | 40.0% | |
| GTCAATCTTACACAACTGCA+AGG | - | Chr4:1093730-1093749 | None:intergenic | 40.0% | |
| GTTGTTCTGTATGTTTGGTC+TGG | + | Chr4:1092969-1092988 | MsG0480018164.01.T01:CDS | 40.0% | |
| TGCAAAGACACTTGGAGAAT+GGG | + | Chr4:1093338-1093357 | MsG0480018164.01.T01:CDS | 40.0% | |
| ! | TTGTGTAAGATTGACTCCGA+GGG | + | Chr4:1093735-1093754 | MsG0480018164.01.T01:CDS | 40.0% |
| !! | TAGTTGGTGTTATCTTCCCA+AGG | + | Chr4:1094022-1094041 | MsG0480018164.01.T01:three_prime_UTR | 40.0% |
| !! | TTACTTTTGCACCTTCATGG+AGG | - | Chr4:1093200-1093219 | None:intergenic | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | + | Chr4:1093837-1093856 | MsG0480018164.01.T01:intron | 40.0% |
| ACTTGTGCTTAGGAAGTCAC+TGG | + | Chr4:1093152-1093171 | MsG0480018164.01.T01:CDS | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | - | Chr4:1093269-1093288 | None:intergenic | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | - | Chr4:1093724-1093743 | None:intergenic | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | + | Chr4:1093159-1093178 | MsG0480018164.01.T01:CDS | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | - | Chr4:1093148-1093167 | None:intergenic | 45.0% | |
| GGAAAAGCTAGGAAGGTAAC+TGG | + | Chr4:1093756-1093775 | MsG0480018164.01.T01:CDS | 45.0% | |
| GTGCAAAGACACTTGGAGAA+TGG | + | Chr4:1093337-1093356 | MsG0480018164.01.T01:CDS | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | - | Chr4:1093914-1093933 | None:intergenic | 45.0% | |
| GTTCCTAGTGCAAAGACACT+TGG | + | Chr4:1093330-1093349 | MsG0480018164.01.T01:CDS | 45.0% | |
| TCTCCAAGTGTCTTTGCACT+AGG | - | Chr4:1093336-1093355 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | + | Chr4:1093862-1093881 | MsG0480018164.01.T01:intron | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | - | Chr4:1093787-1093806 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | + | Chr4:1093734-1093753 | MsG0480018164.01.T01:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | - | Chr4:1093754-1093773 | None:intergenic | 45.0% |
| AAGACACTTGGAGAATGGGC+CGG | + | Chr4:1093342-1093361 | MsG0480018164.01.T01:CDS | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | + | Chr4:1093162-1093181 | MsG0480018164.01.T01:CDS | 50.0% | |
| CTGCCTTGCAACTTGTGCTT+AGG | + | Chr4:1093142-1093161 | MsG0480018164.01.T01:CDS | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | + | Chr4:1093163-1093182 | MsG0480018164.01.T01:CDS | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | - | Chr4:1093622-1093641 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | + | Chr4:1093745-1093764 | MsG0480018164.01.T01:CDS | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | - | Chr4:1093120-1093139 | None:intergenic | 50.0% |
| CCTCCCCAAAATCCTGACCA+CGG | - | Chr4:1093882-1093901 | None:intergenic | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | + | Chr4:1093749-1093768 | MsG0480018164.01.T01:CDS | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | + | Chr4:1093110-1093129 | MsG0480018164.01.T01:CDS | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | + | Chr4:1093867-1093886 | MsG0480018164.01.T01:intron | 55.0% | |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | + | Chr4:1093875-1093894 | MsG0480018164.01.T01:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | + | Chr4:1093876-1093895 | MsG0480018164.01.T01:intron | 55.0% |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | + | Chr4:1093874-1093893 | MsG0480018164.01.T01:intron | 55.0% |
| AACTGGCTGCTCCTGTGTGG+TGG | + | Chr4:1093773-1093792 | MsG0480018164.01.T01:CDS | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | - | Chr4:1093104-1093123 | None:intergenic | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | + | Chr4:1093779-1093798 | MsG0480018164.01.T01:CDS | 60.0% | |
| CTTGCACGTGGCCTCCATGA+AGG | + | Chr4:1093186-1093205 | MsG0480018164.01.T01:CDS | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | - | Chr4:1093103-1093122 | None:intergenic | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | + | Chr4:1093770-1093789 | MsG0480018164.01.T01:CDS | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | - | Chr4:1093105-1093124 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | - | Chr4:1093100-1093119 | None:intergenic | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | + | Chr4:1093879-1093898 | MsG0480018164.01.T01:intron | 60.0% |
| !! | GCATATGGTGGGCTTGCACG+TGG | + | Chr4:1093174-1093193 | MsG0480018164.01.T01:CDS | 60.0% |
| GCCCCTGCTGCTGGAATTCC+AGG | + | Chr4:1093099-1093118 | MsG0480018164.01.T01:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | - | Chr4:1093093-1093112 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | + | Chr4:1093090-1093109 | MsG0480018164.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 1092955 | 1094123 | 1092955 | ID=MsG0480018164.01;Name=MsG0480018164.01 |
| Chr4 | mRNA | 1092955 | 1094123 | 1092955 | ID=MsG0480018164.01.T01;Parent=MsG0480018164.01;Name=MsG0480018164.01.T01;_AED=0.38;_eAED=0.47;_QI=0|1|0.66|1|1|1|3|175|178 |
| Chr4 | exon | 1092955 | 1093365 | 1092955 | ID=MsG0480018164.01.T01:exon:457;Parent=MsG0480018164.01.T01 |
| Chr4 | exon | 1093735 | 1093800 | 1093735 | ID=MsG0480018164.01.T01:exon:458;Parent=MsG0480018164.01.T01 |
| Chr4 | exon | 1093889 | 1094123 | 1093889 | ID=MsG0480018164.01.T01:exon:459;Parent=MsG0480018164.01.T01 |
| Chr4 | CDS | 1092955 | 1093365 | 1092955 | ID=MsG0480018164.01.T01:cds;Parent=MsG0480018164.01.T01 |
| Chr4 | CDS | 1093735 | 1093800 | 1093735 | ID=MsG0480018164.01.T01:cds;Parent=MsG0480018164.01.T01 |
| Chr4 | CDS | 1093889 | 1093948 | 1093889 | ID=MsG0480018164.01.T01:cds;Parent=MsG0480018164.01.T01 |
| Chr4 | three_prime_UTR | 1093949 | 1094123 | 1093949 | ID=MsG0480018164.01.T01:three_prime_utr;Parent=MsG0480018164.01.T01 |
| Gene Sequence |
| Protein sequence |
