AlfalfaGEDB | MsG0880043076.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043076.01

KEGG: K10268
GO: GO:0003735 GO:0005515 GO:0005622 GO:0005840 GO:0006412 GO:0008097
PFAM: PF13516 PF14204 PF17144

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043076.01.T01	KAG5021783.1	74.187	461	95	1	42	478	40	500	0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043076.01.T01	Q9SRR1	58.056	360	148	2	131	488	34	392	2.06E-129	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043076.01.T01	A0A072TPF2	98.000	350	7	0	129	478	36	385	0.0	697

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048040.01	MsG0880043076.01	0.868967	4.402256e-66	1.623526e-62
MsG0080048922.01	MsG0880043076.01	0.894272	2.881242e-75	2.844165e-71
MsG0080048933.01	MsG0880043076.01	0.804267	2.345354e-49	1.203916e-46
MsG0180000096.01	MsG0880043076.01	0.829737	4.355160e-55	4.496952e-52
MsG0180000118.01	MsG0880043076.01	0.870957	9.848839e-67	3.903952e-63
MsG0180001169.01	MsG0880043076.01	0.888140	7.686054e-73	5.880648e-69
MsG0180001829.01	MsG0880043076.01	0.847851	8.900165e-60	1.602891e-56
MsG0180002738.01	MsG0880043076.01	0.934804	2.286848e-96	1.772907e-91
MsG0180002810.01	MsG0880043076.01	0.805743	1.152183e-49	6.143915e-47
MsG0180003585.01	MsG0880043076.01	0.924923	3.679393e-90	1.595759e-85

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043076.01.T01	MTR_8g028140	98.000	350	7	0	129	478	36	385	0.0	697
MsG0880043076.01.T01	MTR_8g028140	98.311	296	5	0	183	478	10	305	0.0	589
MsG0880043076.01.T01	MTR_8g028125	88.538	253	12	2	587	823	49	300	1.80e-153	451
MsG0880043076.01.T01	MTR_3g118030	84.746	236	20	1	595	814	56	291	4.77e-136	406
MsG0880043076.01.T01	MTR_3g118030	56.977	86	33	2	478	560	2	86	2.62e-22	98.6
MsG0880043076.01.T01	MTR_4g016680	59.286	140	34	1	665	804	7	123	2.84e-44	156
MsG0880043076.01.T01	MTR_1g114610	27.219	338	198	6	132	460	37	335	9.62e-26	111
MsG0880043076.01.T01	MTR_2g021030	27.885	312	167	8	145	427	152	434	1.55e-24	108
MsG0880043076.01.T01	MTR_2g021030	28.329	353	220	10	130	462	26	365	7.34e-23	103
MsG0880043076.01.T01	MTR_1g030060	58.140	86	31	2	39	119	5	90	1.50e-23	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043076.01.T01	AT3G07550	58.056	360	148	2	131	488	34	392	2.10e-130	395
MsG0880043076.01.T01	AT3G07550	58.056	360	148	2	131	488	34	392	2.10e-130	395
MsG0880043076.01.T01	AT3G25520	76.543	243	40	2	587	813	49	290	1.34e-125	379
MsG0880043076.01.T01	AT3G25520	65.476	84	27	1	478	559	2	85	4.70e-26	109
MsG0880043076.01.T01	AT3G25520	76.543	243	40	2	587	813	49	290	1.34e-125	379
MsG0880043076.01.T01	AT3G25520	65.476	84	27	1	478	559	2	85	4.70e-26	109
MsG0880043076.01.T01	AT5G39740	75.720	243	42	2	587	813	49	290	2.49e-125	378
MsG0880043076.01.T01	AT5G39740	65.476	84	27	1	478	559	2	85	3.41e-26	110
MsG0880043076.01.T01	AT5G39740	75.720	243	42	2	587	813	49	290	2.49e-125	378
MsG0880043076.01.T01	AT5G39740	65.476	84	27	1	478	559	2	85	3.41e-26	110

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Find 209 sgRNAs with CRISPR-Local

Find 776 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCTTTGCCGTAAATG+TGG	0.524264	8:-18605937	MsG0880043076.01.T01:CDS
AAAGACACGGTTTCCAGTAG+TGG	0.561300	8:+18599149	None:intergenic
AAATACCTCTTGTGTTGTTT+TGG	0.227809	8:+18598638	None:intergenic
AACCGTCTCGTAATGCCCGC+AGG	0.559683	8:+18604770	None:intergenic
AACTCCTTATTAGACCAACA+AGG	0.684350	8:-18599621	MsG0880043076.01.T01:intron
AACTGCTTTGCCGTAAATGT+GGG	0.484366	8:-18605936	MsG0880043076.01.T01:CDS
AAGAAAGGAATTGAGGCAGA+TGG	0.591978	8:-18598737	MsG0880043076.01.T01:CDS
AAGAGCTTTCAACCCTTTGT+CGG	0.454218	8:+18605233	None:intergenic
AAGAGGGACATATGAGTTGG+AGG	0.507778	8:+18599777	None:intergenic
AAGGTTTGCTGGGTTTGACA+AGG	0.586996	8:-18598985	MsG0880043076.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAATCTCACGTACAG+AGG	-	Chr8:18598750-18598769	MsG0880043076.01.T01:CDS	30.0%
AAAGAAAAAATCGATCGACA+CGG	-	Chr8:18601168-18601187	MsG0880043076.01.T01:intron	30.0%
AAATAAATCTCACGTACAGA+GGG	-	Chr8:18598751-18598770	MsG0880043076.01.T01:CDS	30.0%
AACAAAAAGGAAAAGATAGC+CGG	+	Chr8:18602251-18602270	None:intergenic	30.0%
AACCAAAATCTTGCAATGTA+TGG	-	Chr8:18602331-18602350	MsG0880043076.01.T01:intron	30.0%
AAGAAATGTCAGAATGAAAG+AGG	+	Chr8:18607947-18607966	None:intergenic	30.0%
AAGTATCCTTAGTATCCTTA+GGG	-	Chr8:18605277-18605296	MsG0880043076.01.T01:CDS	30.0%
AATTAAGAAATCAGAGAAGC+AGG	-	Chr8:18610215-18610234	MsG0880043076.01.T01:intron	30.0%
AATTGACAAGTAAGGAAGAA+AGG	-	Chr8:18601198-18601217	MsG0880043076.01.T01:intron	30.0%
AATTGTTAGAAATGCTAGTC+GGG	-	Chr8:18608777-18608796	MsG0880043076.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	18598113	18610787	18598113	ID=MsG0880043076.01;Name=MsG0880043076.01
Chr8	mRNA	18598113	18610787	18598113	ID=MsG0880043076.01.T01;Parent=MsG0880043076.01;Name=MsG0880043076.01.T01;_AED=0.38;_eAED=0.41;_QI=0\|0.45\|0.5\|1\|0.81\|0.83\|12\|322\|823
Chr8	exon	18598113	18598543	18598113	ID=MsG0880043076.01.T01:exon:3693;Parent=MsG0880043076.01.T01
Chr8	exon	18598644	18598813	18598644	ID=MsG0880043076.01.T01:exon:3692;Parent=MsG0880043076.01.T01
Chr8	exon	18598962	18599048	18598962	ID=MsG0880043076.01.T01:exon:3691;Parent=MsG0880043076.01.T01
Chr8	exon	18599137	18599253	18599137	ID=MsG0880043076.01.T01:exon:3690;Parent=MsG0880043076.01.T01
Chr8	exon	18599335	18599414	18599335	ID=MsG0880043076.01.T01:exon:3689;Parent=MsG0880043076.01.T01
Chr8	exon	18599504	18599630	18599504	ID=MsG0880043076.01.T01:exon:3688;Parent=MsG0880043076.01.T01
Chr8	exon	18599741	18599865	18599741	ID=MsG0880043076.01.T01:exon:3687;Parent=MsG0880043076.01.T01
Chr8	exon	18600467	18600622	18600467	ID=MsG0880043076.01.T01:exon:3686;Parent=MsG0880043076.01.T01
Chr8	exon	18600724	18600793	18600724	ID=MsG0880043076.01.T01:exon:3685;Parent=MsG0880043076.01.T01
Chr8	exon	18604663	18605711	18604663	ID=MsG0880043076.01.T01:exon:3684;Parent=MsG0880043076.01.T01
Chr8	exon	18605887	18606146	18605887	ID=MsG0880043076.01.T01:exon:3683;Parent=MsG0880043076.01.T01
Chr8	exon	18610666	18610787	18610666	ID=MsG0880043076.01.T01:exon:3682;Parent=MsG0880043076.01.T01
Chr8	CDS	18610666	18610787	18610666	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18605887	18606146	18605887	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18604663	18605711	18604663	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18600724	18600793	18600724	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18600467	18600622	18600467	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18599741	18599865	18599741	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18599504	18599630	18599504	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18599335	18599414	18599335	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18599137	18599253	18599137	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18598962	18599048	18598962	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18598644	18598813	18598644	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	CDS	18598435	18598543	18598435	ID=MsG0880043076.01.T01:cds;Parent=MsG0880043076.01.T01
Chr8	three_prime_UTR	18598113	18598434	18598113	ID=MsG0880043076.01.T01:three_prime_utr;Parent=MsG0880043076.01.T01

Gene Sequence

>MsG0880043076.01.T01

ATGAGGTTAGAGAAATCCATGGAGGAATTGTACAAGGTGAACGTGGAAAGAAAAGTTGCACGTCAAAACCTAGCTCAGCCTGAAGTTTCAGGATGGTTCAATTTTCCTCGATACCGATTTCGCTGCGGCTCTTGTGGATACCCTCTGAAATTGACATCTTCAAATCGTATCACATCTAACATTGCATCAGAATACCAAAAGTCTGTTAATAAAGGATCAATCTCTTTTTCTTCCGTTGATCTCAGCCGTTTTACACAGGTTGATGAAGTAAATTGTTTTCCAGTCTCATGGTTGTCTCGTTCAAAGACTAAACTGCTTTGCCGTAAATGTGGGGTTCATATTGGTTATGGTTATAGTAGAGAATCACCTGCACTTTGTGGATATTGTCGTACTGATCGTGAATCATTTGGCTTGACTTGCCGCCGATGGCTCCATATCCAAAATTTCAACCGTCGGACTCTGCAATTTGAGTGTTCATTTAGTATATTAAACCTTTCTTCTTTGTCTGCTAAGGGTCTTGATGTTTACACCGTCCATATTCATAGGTTGCTAAGGCGCTTTCAACATTTAGAGTCTTTATCTCTATGTGGTTGCACGGAGCTCGATGATTCAGGACTAACCCGTTTGCTAAGCTACGGTTCAAATTTACAAAAACTTAATCTGGATTGTTGTTTGAAAGTCACTAACTACGGGCTATCCCTAGTTGCTTCTGGTTGTCCCTCATTGACAACAATTAGTCTCTATCGGTGTCTTAACATTACTGATGAAGGATTAGAGACTTTAACCTCTGCTTGCTTATCTTTGAAATGCATAAACCTGTCATACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGCGGTGTCGCCAGCTTCAAGCTATTAACGTATCACACTGTGAGCGTATAAGTGGCGTTGGATTCGAAGGGTGTTCCAAATCTCTCGTGCATGTAGAGGCCGAGTCTTGTAAACTTAGCCTAGAAGGGGTGGTCGGAATTGTTAGCGGTGGCGGAATAGAGTATCTAGATGTATCTTGCTTAAGTTGGTCACCATCGGGAGATCCCCTGCGTGGAATAGGATTTTCCTCAAGCCTCAAAATCCTAAACTTCCGAATGTGTAGATCAGTTTCTGATGCTTCTATTATTGCAATAGCCAAGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGTATATCTGGATGGCAAGCAGTGGGGCTATATTGCCAGAATTTGAAGAGACTGCATGTGAATAGATGCCTCAATCTTACTGATAATGGCCTGCGGGCATTACGAGACGGTTGCAAAAGTCTCTCCATTTTGTACTTGAATGGTTGTGCTCGAGTGACGCCTTTAGCATTAGAGTTATTCAAGTCTCACAGGGGCGATGTTTGCATAAAGGAAGAAGAGGTTTATGTTAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGTTACCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAGACTGATTACCGTGCTCGTATTCGCCTGATTAACCAGGATAAGAACAAGTACAACACCCCCAAGTACCGATTTGTTGTCCGATTTGTATCCTTTTGTCAGCTTATAGTTATGATTTTCATTGATGCACTGGTATTTAAGTTGCTGTCTTTGGCACATGTTTTTAGTCAATTGTTTGTAATGCTAGTTTGGCAAATTGAATCAACAACCTTTAATCCCTCCAACTCATATGTCCCTCTTTCCAAATCACCTTATAACTTTTTGATAGCTTATTATACCAACAAGGACATAGTGGCACAAATAGTGTCCGCTAGTATTGCTGGTGATATTGTTCTTGCTGCTGCATATTCTCATGAGCTACCACACTTTGGTCTTTCAGTAGGCCTTACAAATTATGCTGCAGCTTATTGCACTGGACTCCTCTTGGCCCGTCGTGTTCTGAAGACACTTGAGATGGATGAGGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGATTATTCAGTTGAGCCAGCTGAGTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACTACTGGAAACCGTGTCTTTGGTGCCTTGAAGGGAGCCCTAGATGGTGGTTTGGATATTCCTCACAGCGACAAAAGGTTTGCTGGGTTTGACAAGGAGAAGAAAGAGCTCGATGCTGAGACCTTGACTGAAGATGAGCCTGAGAAATTCCAGACTCACTTTAGTGAATACATCAAGAAAGGAATTGAGGCAGATGGCCTTGAGGAGCTGTACAAGAAGGTCCACGCTGCAATTCGTGCTGATCCTACAATTAAGAAATCAGAGAAGCAGGCTCCAAAACAACACAAGAGGTATAATCTGAAGAAGCTTACCTATGAGGAGCGGAAAGCTAAGTTGGTTTCACGCTTGTCAGCTCTTAATGCTGCTGTTGATGATGAGGACGAGGATGACGATGAGTGA

Protein sequence

>MsG0880043076.01.T01

MRLEKSMEELYKVNVERKVARQNLAQPEVSGWFNFPRYRFRCGSCGYPLKLTSSNRITSNIASEYQKSVNKGSISFSSVDLSRFTQVDEVNCFPVSWLSRSKTKLLCRKCGVHIGYGYSRESPALCGYCRTDRESFGLTCRRWLHIQNFNRRTLQFECSFSILNLSSLSAKGLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSGLTRLLSYGSNLQKLNLDCCLKVTNYGLSLVASGCPSLTTISLYRCLNITDEGLETLTSACLSLKCINLSYCSQISDKGLKALTQRCRQLQAINVSHCERISGVGFEGCSKSLVHVEAESCKLSLEGVVGIVSGGGIEYLDVSCLSWSPSGDPLRGIGFSSSLKILNFRMCRSVSDASIIAIAKGCTLLEEWNLALCHEVSISGWQAVGLYCQNLKRLHVNRCLNLTDNGLRALRDGCKSLSILYLNGCARVTPLALELFKSHRGDVCIKEEEVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSFCQLIVMIFIDALVFKLLSLAHVFSQLFVMLVWQIESTTFNPSNSYVPLSKSPYNFLIAYYTNKDIVAQIVSASIAGDIVLAAAYSHELPHFGLSVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAETLTEDEPEKFQTHFSEYIKKGIEADGLEELYKKVHAAIRADPTIKKSEKQAPKQHKRYNLKKLTYEERKAKLVSRLSALNAAVDDEDEDDDE*