Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024540.01.T01 | XP_003611335.1 | 99.281 | 139 | 1 | 0 | 75 | 213 | 4 | 142 | 5.23E-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024540.01.T01 | Q9XHS0 | 75 | 136 | 29 | 1 | 83 | 213 | 8 | 143 | 1.86E-68 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024540.01.T01 | G7JXD6 | 99.281 | 139 | 1 | 0 | 75 | 213 | 4 | 142 | 2.50e-94 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0580024540.01 | 0.828341 | 9.487575e-55 | 9.403235e-52 |
| MsG0080048922.01 | MsG0580024540.01 | 0.865482 | 5.717899e-65 | 1.863222e-61 |
| MsG0180000096.01 | MsG0580024540.01 | 0.840646 | 7.671095e-58 | 1.099714e-54 |
| MsG0180000118.01 | MsG0580024540.01 | 0.882266 | 1.203233e-70 | 7.281254e-67 |
| MsG0180001169.01 | MsG0580024540.01 | 0.837267 | 5.749820e-57 | 7.428885e-54 |
| MsG0180001829.01 | MsG0580024540.01 | 0.851310 | 9.647410e-61 | 1.944803e-57 |
| MsG0180002738.01 | MsG0580024540.01 | 0.818069 | 2.375888e-52 | 1.760354e-49 |
| MsG0180003585.01 | MsG0580024540.01 | 0.865566 | 5.383190e-65 | 1.759527e-61 |
| MsG0180003897.01 | MsG0580024540.01 | 0.899565 | 1.748193e-77 | 2.173778e-73 |
| MsG0180004829.01 | MsG0580024540.01 | 0.867056 | 1.813385e-65 | 6.245544e-62 |
| MsG0180005384.01 | MsG0580024540.01 | 0.887138 | 1.857121e-72 | 1.364225e-68 |
| MsG0180005573.01 | MsG0580024540.01 | 0.847806 | 9.159867e-60 | 1.647258e-56 |
| MsG0180005789.01 | MsG0580024540.01 | 0.846900 | 1.623732e-59 | 2.836542e-56 |
| MsG0280006301.01 | MsG0580024540.01 | 0.827782 | 1.293612e-54 | 1.261321e-51 |
| MsG0280011308.01 | MsG0580024540.01 | 0.840262 | 9.667797e-58 | 1.369605e-54 |
| MsG0380014507.01 | MsG0580024540.01 | 0.867959 | 9.317322e-66 | 3.312765e-62 |
| MsG0480019051.01 | MsG0580024540.01 | 0.815565 | 8.661471e-52 | 5.992516e-49 |
| MsG0480019165.01 | MsG0580024540.01 | 0.889667 | 1.973576e-73 | 1.607451e-69 |
| MsG0480019632.01 | MsG0580024540.01 | 0.831837 | 1.330777e-55 | 1.461495e-52 |
| MsG0480020796.01 | MsG0580024540.01 | 0.903175 | 4.548040e-79 | 6.652930e-75 |
| MsG0480020895.01 | MsG0580024540.01 | 0.831652 | 1.478322e-55 | 1.614458e-52 |
| MsG0480020911.01 | MsG0580024540.01 | 0.892256 | 1.877040e-74 | 1.702235e-70 |
| MsG0480021279.01 | MsG0580024540.01 | 0.929276 | 8.759648e-93 | 4.848204e-88 |
| MsG0480021293.01 | MsG0580024540.01 | 0.800345 | 1.505742e-48 | 6.994673e-46 |
| MsG0480021417.01 | MsG0580024540.01 | 0.882439 | 1.041277e-70 | 6.342518e-67 |
| MsG0480022006.01 | MsG0580024540.01 | 0.869340 | 3.331677e-66 | 1.246019e-62 |
| MsG0480022041.01 | MsG0580024540.01 | 0.825951 | 3.543005e-54 | 3.277095e-51 |
| MsG0480022363.01 | MsG0580024540.01 | 0.868344 | 7.001909e-66 | 2.524162e-62 |
| MsG0480022789.01 | MsG0580024540.01 | 0.845677 | 3.497308e-59 | 5.873913e-56 |
| MsG0480022955.01 | MsG0580024540.01 | 0.838687 | 2.479301e-57 | 3.346185e-54 |
| MsG0480023380.01 | MsG0580024540.01 | 0.887112 | 1.898541e-72 | 1.393327e-68 |
| MsG0480023774.01 | MsG0580024540.01 | 0.901201 | 3.405164e-78 | 4.551292e-74 |
| MsG0480023931.01 | MsG0580024540.01 | 0.876402 | 1.437337e-68 | 6.958951e-65 |
| MsG0480023941.01 | MsG0580024540.01 | 0.807444 | 5.039451e-50 | 2.807306e-47 |
| MsG0480023996.01 | MsG0580024540.01 | 0.842545 | 2.421919e-58 | 3.684720e-55 |
| MsG0580024059.01 | MsG0580024540.01 | 0.868954 | 4.448005e-66 | 1.639410e-62 |
| MsG0580024481.01 | MsG0580024540.01 | 0.857324 | 1.764332e-62 | 4.337834e-59 |
| MsG0580024540.01 | MsG0580024738.01 | 0.903939 | 2.064745e-79 | 3.120863e-75 |
| MsG0580024540.01 | MsG0580024894.01 | 0.858271 | 9.239276e-63 | 2.344723e-59 |
| MsG0580024540.01 | MsG0580025750.01 | 0.879506 | 1.179260e-69 | 6.409495e-66 |
| MsG0580024540.01 | MsG0580026749.01 | 0.804290 | 2.319434e-49 | 1.191359e-46 |
| MsG0580024540.01 | MsG0580030073.01 | 0.849585 | 2.942615e-60 | 5.604800e-57 |
| MsG0580024540.01 | MsG0680031368.01 | 0.877942 | 4.190231e-69 | 2.147530e-65 |
| MsG0580024540.01 | MsG0680032459.01 | 0.838912 | 2.169485e-57 | 2.947876e-54 |
| MsG0580024540.01 | MsG0680035611.01 | 0.879786 | 9.374975e-70 | 5.151485e-66 |
| MsG0580024540.01 | MsG0780036015.01 | 0.801523 | 8.648172e-49 | 4.138972e-46 |
| MsG0580024540.01 | MsG0780037290.01 | 0.816158 | 6.386648e-52 | 4.491038e-49 |
| MsG0580024540.01 | MsG0780038383.01 | 0.899228 | 2.438380e-77 | 2.987237e-73 |
| MsG0580024540.01 | MsG0780041058.01 | 0.842890 | 1.960973e-58 | 3.015392e-55 |
| MsG0580024540.01 | MsG0780041240.01 | 0.814954 | 1.183983e-51 | 8.055633e-49 |
| MsG0580024540.01 | MsG0780041244.01 | 0.821216 | 4.542162e-53 | 3.672790e-50 |
| MsG0580024540.01 | MsG0780041311.01 | 0.802275 | 6.059987e-49 | 2.956232e-46 |
| MsG0580024540.01 | MsG0780041461.01 | 0.848053 | 7.831280e-60 | 1.419205e-56 |
| MsG0580024540.01 | MsG0780041522.01 | 0.912390 | 2.058533e-83 | 4.620620e-79 |
| MsG0580024540.01 | MsG0780041790.01 | 0.894071 | 3.480617e-75 | 3.407868e-71 |
| MsG0580024540.01 | MsG0880041941.01 | 0.831830 | 1.336504e-55 | 1.467453e-52 |
| MsG0580024540.01 | MsG0880042517.01 | 0.894124 | 3.312281e-75 | 3.250729e-71 |
| MsG0580024540.01 | MsG0880042896.01 | 0.860247 | 2.359631e-63 | 6.407675e-60 |
| MsG0580024540.01 | MsG0880043076.01 | 0.903971 | 1.995666e-79 | 3.020277e-75 |
| MsG0580024540.01 | MsG0880044204.01 | 0.809706 | 1.657474e-50 | 9.801178e-48 |
| MsG0580024540.01 | MsG0880045836.01 | 0.818228 | 2.186624e-52 | 1.627245e-49 |
| MsG0580024540.01 | MsG0880046220.01 | 0.891046 | 5.679099e-74 | 4.899937e-70 |
| MsG0580024540.01 | MsG0880046486.01 | 0.863282 | 2.782022e-64 | 8.388886e-61 |
| MsG0580024540.01 | MsG0880046760.01 | 0.832613 | 8.553552e-56 | 9.610517e-53 |
| MsG0580024540.01 | MsG0880047310.01 | 0.837938 | 3.867870e-57 | 5.102396e-54 |
| MsG0380015446.01 | MsG0580024540.01 | 0.812122 | 4.969860e-51 | 3.133034e-48 |
| MsG0380015494.01 | MsG0580024540.01 | 0.811848 | 5.700287e-51 | 3.566936e-48 |
| MsG0380015766.01 | MsG0580024540.01 | 0.807721 | 4.401100e-50 | 2.469477e-47 |
| MsG0380015857.01 | MsG0580024540.01 | 0.898204 | 6.668227e-77 | 7.803694e-73 |
| MsG0380016653.01 | MsG0580024540.01 | 0.806625 | 7.509640e-50 | 4.095344e-47 |
| MsG0380016678.01 | MsG0580024540.01 | 0.879224 | 1.483189e-69 | 7.977790e-66 |
| MsG0380016744.01 | MsG0580024540.01 | 0.839434 | 1.587997e-57 | 2.192849e-54 |
| MsG0380016760.01 | MsG0580024540.01 | 0.887452 | 1.408965e-72 | 1.048415e-68 |
| MsG0380017496.01 | MsG0580024540.01 | 0.804759 | 1.851478e-49 | 9.626120e-47 |
| MsG0380018056.01 | MsG0580024540.01 | 0.822685 | 2.075585e-53 | 1.749560e-50 |
| MsG0480018164.01 | MsG0580024540.01 | 0.928280 | 3.607934e-92 | 1.882838e-87 |
| MsG0280006629.01 | MsG0580024540.01 | 0.896473 | 3.568276e-76 | 3.865652e-72 |
| MsG0280006747.01 | MsG0580024540.01 | 0.901413 | 2.746599e-78 | 3.706334e-74 |
| MsG0280006760.01 | MsG0580024540.01 | 0.819988 | 8.695293e-53 | 6.795019e-50 |
| MsG0280007055.01 | MsG0580024540.01 | 0.936340 | 2.031461e-97 | 1.723503e-92 |
| MsG0280007084.01 | MsG0580024540.01 | 0.835096 | 2.047672e-56 | 2.478098e-53 |
| MsG0280007606.01 | MsG0580024540.01 | 0.827544 | 1.475617e-54 | 1.428900e-51 |
| MsG0280007995.01 | MsG0580024540.01 | 0.867402 | 1.405470e-65 | 4.901440e-62 |
| MsG0280010203.01 | MsG0580024540.01 | 0.812234 | 4.697764e-51 | 2.970629e-48 |
| MsG0280010519.01 | MsG0580024540.01 | 0.822116 | 2.814237e-53 | 2.333857e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480018164.01 | MsG0580024540.01 | PPI |
| MsG0380016379.01 | MsG0580024540.01 | PPI |
| MsG0180001832.01 | MsG0580024540.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024540.01.T01 | MTR_5g012890 | 99.281 | 139 | 1 | 0 | 75 | 213 | 4 | 142 | 6.33e-98 | 281 |
| MsG0580024540.01.T01 | MTR_8g093770 | 94.444 | 126 | 7 | 0 | 88 | 213 | 18 | 143 | 1.65e-85 | 249 |
| MsG0580024540.01.T01 | MTR_4g006830 | 94.444 | 126 | 7 | 0 | 88 | 213 | 19 | 144 | 2.63e-84 | 246 |
| MsG0580024540.01.T01 | MTR_5g012890 | 96.154 | 104 | 4 | 0 | 75 | 178 | 4 | 107 | 9.58e-68 | 203 |
| MsG0580024540.01.T01 | MTR_8g019090 | 84.314 | 51 | 8 | 0 | 1 | 51 | 59 | 109 | 1.32e-22 | 91.7 |
| MsG0580024540.01.T01 | MTR_4g073510 | 68.627 | 51 | 14 | 1 | 75 | 123 | 4 | 54 | 1.08e-13 | 69.3 |
| MsG0580024540.01.T01 | MTR_4g050743 | 50.000 | 54 | 27 | 0 | 1 | 54 | 94 | 147 | 4.92e-12 | 62.8 |
| MsG0580024540.01.T01 | MTR_7g050355 | 54.000 | 50 | 23 | 0 | 1 | 50 | 502 | 551 | 7.46e-12 | 64.3 |
| MsG0580024540.01.T01 | MTR_6g024100 | 57.143 | 49 | 21 | 0 | 2 | 50 | 150 | 198 | 1.76e-11 | 62.0 |
| MsG0580024540.01.T01 | MTR_1g057360 | 54.000 | 50 | 23 | 0 | 1 | 50 | 221 | 270 | 3.26e-11 | 62.0 |
| MsG0580024540.01.T01 | MTR_2g047010 | 48.148 | 54 | 28 | 0 | 1 | 54 | 94 | 147 | 3.72e-11 | 60.5 |
| MsG0580024540.01.T01 | MTR_1g050338 | 50.000 | 50 | 25 | 0 | 1 | 50 | 3 | 52 | 7.50e-11 | 56.2 |
| MsG0580024540.01.T01 | MTR_1g045920 | 47.059 | 51 | 27 | 0 | 1 | 51 | 145 | 195 | 8.28e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024540.01.T01 | AT2G32060 | 74.400 | 125 | 31 | 1 | 89 | 213 | 21 | 144 | 2.24e-65 | 199 |
| MsG0580024540.01.T01 | AT2G32060 | 74.400 | 125 | 31 | 1 | 89 | 213 | 21 | 144 | 2.24e-65 | 199 |
| MsG0580024540.01.T01 | AT2G32060 | 74.400 | 125 | 31 | 1 | 89 | 213 | 21 | 144 | 2.24e-65 | 199 |
| MsG0580024540.01.T01 | AT1G15930 | 74.400 | 125 | 31 | 1 | 89 | 213 | 21 | 144 | 3.72e-63 | 193 |
| MsG0580024540.01.T01 | AT1G15930 | 74.400 | 125 | 31 | 1 | 89 | 213 | 21 | 144 | 3.72e-63 | 193 |
Find 49 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACGGTGTTCAGAAATTC+TGG | 0.243612 | 5:-6168697 | None:intergenic |
| TTCACCAATTTGACATAATC+AGG | 0.268051 | 5:-6171245 | None:intergenic |
| GGAACACGTCTCAAAGTAAA+TGG | 0.268765 | 5:-6169955 | None:intergenic |
| GTTGTTGCTGCTGCAATTCC+AGG | 0.269519 | 5:+6171074 | MsG0580024540.01.T01:CDS |
| CTGAACACCGTAAAATCTTC+AGG | 0.277223 | 5:+6168706 | MsG0580024540.01.T01:CDS |
| GATGCTCTTGTGTGGTTGTC+AGG | 0.354575 | 5:+6171564 | MsG0580024540.01.T01:CDS |
| ATGCTGCAAAACAACATTGT+AGG | 0.363171 | 5:-6171700 | None:intergenic |
| CATAAGCACGAGACTTTCTA+AGG | 0.363450 | 5:-6171133 | None:intergenic |
| CCAACCTGATTATGTCAAAT+TGG | 0.373462 | 5:+6171241 | MsG0580024540.01.T01:CDS |
| CTTAGAAAGTCTCGTGCTTA+TGG | 0.383982 | 5:+6171134 | MsG0580024540.01.T01:CDS |
| GATGCACGGGAAGTAAATTA+TGG | 0.389165 | 5:-6169902 | None:intergenic |
| ATCAGGTTGGTCACAATCTT+CGG | 0.412966 | 5:-6171228 | None:intergenic |
| ATGATGTCCATTGGCTCGCC+TGG | 0.437864 | 5:-6171092 | None:intergenic |
| TTGAGATTTAACTCATGGTT+CGG | 0.446265 | 5:-6168733 | None:intergenic |
| TCTCCAAGGGTCTTTGCACT+TGG | 0.459795 | 5:-6171308 | None:intergenic |
| TTTAGACCCGTGCGATGCAC+GGG | 0.459897 | 5:-6169915 | None:intergenic |
| GGAATTGCAGCAGCAACAAC+AGG | 0.463311 | 5:-6171071 | None:intergenic |
| CCTTTATGAAGTATCTGCTA+AGG | 0.472954 | 5:+6171804 | MsG0580024540.01.T01:three_prime_UTR |
| CCTTAGCAGATACTTCATAA+AGG | 0.476358 | 5:-6171804 | None:intergenic |
| GGTAAAGCTAGGAAGGTTAC+CGG | 0.476827 | 5:+6171542 | MsG0580024540.01.T01:CDS |
| TTTACTTCCCGTGCATCGCA+CGG | 0.481570 | 5:+6169908 | MsG0580024540.01.T01:CDS |
| CAACCTTGAGATTTAACTCA+TGG | 0.483340 | 5:-6168738 | None:intergenic |
| TCTGGAGTGAGAATCTCATC+AGG | 0.499512 | 5:-6168679 | None:intergenic |
| AACATTGTGCTCTGCGCAGA+GGG | 0.503587 | 5:-6171270 | None:intergenic |
| TGAACACCGTAAAATCTTCA+GGG | 0.503809 | 5:+6168707 | MsG0580024540.01.T01:CDS |
| ATTTAGACCCGTGCGATGCA+CGG | 0.505953 | 5:-6169916 | None:intergenic |
| TTACTTCCCGTGCATCGCAC+GGG | 0.515124 | 5:+6169909 | MsG0580024540.01.T01:CDS |
| CTTTATGAAGTATCTGCTAA+GGG | 0.521301 | 5:+6171805 | MsG0580024540.01.T01:three_prime_UTR |
| GACAACCACACAAGAGCATC+CGG | 0.522597 | 5:-6171561 | None:intergenic |
| TTACGCCAGCCCACTCTCCA+AGG | 0.529322 | 5:-6171322 | None:intergenic |
| CCAATTTGACATAATCAGGT+TGG | 0.530247 | 5:-6171241 | None:intergenic |
| TGCAAAGACCCTTGGAGAGT+GGG | 0.530356 | 5:+6171313 | MsG0580024540.01.T01:CDS |
| TTTGTTATGCAGTGAAGAAG+AGG | 0.537025 | 5:+6171034 | MsG0580024540.01.T01:intron |
| GTTCCAAGTGCAAAGACCCT+TGG | 0.537039 | 5:+6171305 | MsG0580024540.01.T01:CDS |
| AAGACCCTTGGAGAGTGGGC+TGG | 0.538691 | 5:+6171317 | MsG0580024540.01.T01:CDS |
| TTGATTCAGAAGGTAAAGCT+AGG | 0.543764 | 5:+6171531 | MsG0580024540.01.T01:CDS |
| TTCAGAAGGTAAAGCTAGGA+AGG | 0.557714 | 5:+6171535 | MsG0580024540.01.T01:CDS |
| TGCAATTCCAGGCGAGCCAA+TGG | 0.568250 | 5:+6171085 | MsG0580024540.01.T01:CDS |
| GTGCAAAGACCCTTGGAGAG+TGG | 0.569975 | 5:+6171312 | MsG0580024540.01.T01:CDS |
| ATGCTCTTGTGTGGTTGTCA+GGG | 0.586706 | 5:+6171565 | MsG0580024540.01.T01:CDS |
| AAAGCAGTCATGATGTCCAT+TGG | 0.589394 | 5:-6171101 | None:intergenic |
| CTTGCACGAGGTCTTCATGA+AGG | 0.605005 | 5:+6171161 | MsG0580024540.01.T01:CDS |
| AGAAAGTCTCGTGCTTATGG+TGG | 0.620799 | 5:+6171137 | MsG0580024540.01.T01:CDS |
| TTGTGCAAGATTGATTCAGA+AGG | 0.623879 | 5:+6171521 | MsG0580024540.01.T01:CDS |
| TACGCCAGCCCACTCTCCAA+GGG | 0.624257 | 5:-6171321 | None:intergenic |
| GAACCATGAGTTAAATCTCA+AGG | 0.624539 | 5:+6168735 | MsG0580024540.01.T01:CDS |
| GCTTATGGTGGTCTTGCACG+AGG | 0.624672 | 5:+6171149 | MsG0580024540.01.T01:CDS |
| TAACATTGTGCTCTGCGCAG+AGG | 0.632440 | 5:-6171271 | None:intergenic |
| GGTTACCGGATGCTCTTGTG+TGG | 0.638821 | 5:+6171556 | MsG0580024540.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTTAAATT+TGG | + | Chr5:6169390-6169409 | MsG0580024540.01.T01:intron | 0.0% |
| !!! | AATTTTCATAAAAAAGTATA+AGG | - | Chr5:6169485-6169504 | None:intergenic | 10.0% |
| !!! | GTTTTTAAAGTTTTTTTTTT+TGG | + | Chr5:6169266-6169285 | MsG0580024540.01.T01:intron | 10.0% |
| !!! | TAGTTAATTTTTTATTTTGT+AGG | - | Chr5:6170024-6170043 | None:intergenic | 10.0% |
| !! | AAAAAAACGTTAGTATTAAT+TGG | + | Chr5:6170058-6170077 | MsG0580024540.01.T01:intron | 15.0% |
| !! | AAAAGTTCACAATATAAATT+TGG | - | Chr5:6171411-6171430 | None:intergenic | 15.0% |
| !! | AAAGTTCACAATATAAATTT+GGG | - | Chr5:6171410-6171429 | None:intergenic | 15.0% |
| !! | TACAAATTTATTCTATTTCA+TGG | + | Chr5:6169573-6169592 | MsG0580024540.01.T01:intron | 15.0% |
| !!! | ATTCTTCTATTTATATGTTT+TGG | + | Chr5:6170935-6170954 | MsG0580024540.01.T01:intron | 15.0% |
| !!! | ATTTTCTAAAACCAATTTTA+CGG | - | Chr5:6169979-6169998 | None:intergenic | 15.0% |
| !!! | GTTTTTTATTGTTTTTGTTT+TGG | + | Chr5:6169814-6169833 | MsG0580024540.01.T01:intron | 15.0% |
| !!! | TTTATGATGAATTTTTTCAT+TGG | + | Chr5:6169612-6169631 | MsG0580024540.01.T01:intron | 15.0% |
| !!! | TTTTTTGGTACAATTTTTAA+AGG | + | Chr5:6169281-6169300 | MsG0580024540.01.T01:intron | 15.0% |
| !! | ACAATATAAATTTGGGAATT+GGG | - | Chr5:6171403-6171422 | None:intergenic | 20.0% |
| !! | ATATTTCTCAACAACATTAT+TGG | - | Chr5:6168769-6168788 | None:intergenic | 20.0% |
| !! | ATTACTTGTAGTTATTACTA+AGG | - | Chr5:6170823-6170842 | None:intergenic | 20.0% |
| !! | ATTATATTAGTAGTTGCATT+TGG | + | Chr5:6169740-6169759 | MsG0580024540.01.T01:intron | 20.0% |
| !! | GTTAAAACAATGTATTTCTT+TGG | + | Chr5:6169316-6169335 | MsG0580024540.01.T01:intron | 20.0% |
| !! | TAGTATTAATTGGAAAAGTA+GGG | + | Chr5:6170068-6170087 | MsG0580024540.01.T01:intron | 20.0% |
| !! | TTAGTATTAATTGGAAAAGT+AGG | + | Chr5:6170067-6170086 | MsG0580024540.01.T01:intron | 20.0% |
| !! | TTCAAATGCAATTGTAATTT+AGG | + | Chr5:6170329-6170348 | MsG0580024540.01.T01:intron | 20.0% |
| !!! | AAAGTAAGTTTTGAATTAGA+TGG | - | Chr5:6168932-6168951 | None:intergenic | 20.0% |
| !!! | ATTTATTTTTTCTTTTGCTG+TGG | - | Chr5:6170405-6170424 | None:intergenic | 20.0% |
| !!! | TAAAGATTTTTAAACTTGCA+AGG | - | Chr5:6170988-6171007 | None:intergenic | 20.0% |
| !!! | TATATTCCAACATTTTTAAC+AGG | - | Chr5:6169025-6169044 | None:intergenic | 20.0% |
| !!! | TTATTTTGTAGGAAAGTAAA+TGG | - | Chr5:6170013-6170032 | None:intergenic | 20.0% |
| ! | AAAAATAAGACAATGCAAAC+GGG | + | Chr5:6170694-6170713 | MsG0580024540.01.T01:intron | 25.0% |
| ! | AAAACTAGGTTAAGAATCAA+GGG | - | Chr5:6171351-6171370 | None:intergenic | 25.0% |
| ! | AACTATCCATGTGAAAATAT+GGG | - | Chr5:6169058-6169077 | None:intergenic | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | - | Chr5:6170447-6170466 | None:intergenic | 25.0% |
| ! | AATGTGCATATTATTTCCTA+AGG | + | Chr5:6169713-6169732 | MsG0580024540.01.T01:intron | 25.0% |
| ! | AATTCCTGCATAAAACAAAA+TGG | - | Chr5:6170225-6170244 | None:intergenic | 25.0% |
| ! | AATTTATTCTATTTCATGGC+AGG | + | Chr5:6169577-6169596 | MsG0580024540.01.T01:intron | 25.0% |
| ! | AGAAATATTGATCAACCATT+AGG | + | Chr5:6168781-6168800 | MsG0580024540.01.T01:intron | 25.0% |
| ! | AGACAACATTATAAGTTTGT+TGG | - | Chr5:6169155-6169174 | None:intergenic | 25.0% |
| ! | ATCCTGCAAACAAAAAAAAA+AGG | - | Chr5:6171661-6171680 | None:intergenic | 25.0% |
| ! | ATCTTAAACGATAAAACTAC+GGG | - | Chr5:6170737-6170756 | None:intergenic | 25.0% |
| ! | CAAAAATAAGACAATGCAAA+CGG | + | Chr5:6170693-6170712 | MsG0580024540.01.T01:intron | 25.0% |
| ! | CACAATATAAATTTGGGAAT+TGG | - | Chr5:6171404-6171423 | None:intergenic | 25.0% |
| ! | GATAAATCAAGACACAATAT+TGG | + | Chr5:6168866-6168885 | MsG0580024540.01.T01:intron | 25.0% |
| ! | GATCTTAAACGATAAAACTA+CGG | - | Chr5:6170738-6170757 | None:intergenic | 25.0% |
| ! | TAAAACTAGGTTAAGAATCA+AGG | - | Chr5:6171352-6171371 | None:intergenic | 25.0% |
| ! | TAACTATCCATGTGAAAATA+TGG | - | Chr5:6169059-6169078 | None:intergenic | 25.0% |
| ! | TACTAATATAATTTCGCCTT+AGG | - | Chr5:6169732-6169751 | None:intergenic | 25.0% |
| ! | TCCTGCAAACAAAAAAAAAA+GGG | - | Chr5:6171660-6171679 | None:intergenic | 25.0% |
| ! | TTAGCATGAAAAAAGACAAT+AGG | - | Chr5:6171619-6171638 | None:intergenic | 25.0% |
| ! | TTATGAAAATAAGCTGAAGA+CGG | + | Chr5:6170479-6170498 | MsG0580024540.01.T01:intron | 25.0% |
| !! | AATGTATAGAACTTTTTACC+AGG | - | Chr5:6170918-6170937 | None:intergenic | 25.0% |
| !! | ATATTTTCATCATGTGTAGA+CGG | - | Chr5:6168652-6168671 | None:intergenic | 25.0% |
| !!! | AAGTATATTTTTTTCTCACC+AGG | - | Chr5:6168616-6168635 | None:intergenic | 25.0% |
| !!! | GGATTTTGATGTTTTTATGA+TGG | + | Chr5:6171826-6171845 | MsG0580024540.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTTGTTTGCAGGATTTT+GGG | + | Chr5:6171664-6171683 | MsG0580024540.01.T01:intron | 25.0% |
| !!! | TTTTTTTGTTTGCAGGATTT+TGG | + | Chr5:6171663-6171682 | MsG0580024540.01.T01:intron | 25.0% |
| AAAATAAGACAATGCAAACG+GGG | + | Chr5:6170695-6170714 | MsG0580024540.01.T01:intron | 30.0% | |
| AAGACACAATATTGGACAAA+AGG | + | Chr5:6168874-6168893 | MsG0580024540.01.T01:intron | 30.0% | |
| AAGTACGAAATTCCTCATTT+GGG | - | Chr5:6168838-6168857 | None:intergenic | 30.0% | |
| ACAAGGAATTGGATAAAACT+AGG | - | Chr5:6171365-6171384 | None:intergenic | 30.0% | |
| AGATAACTGAATCTGATATC+CGG | + | Chr5:6170794-6170813 | MsG0580024540.01.T01:intron | 30.0% | |
| ATCAACCAAGAAATATGTCA+GGG | + | Chr5:6170263-6170282 | MsG0580024540.01.T01:intron | 30.0% | |
| ATGACTATCAATAAGAGTCA+AGG | + | Chr5:6168995-6169014 | MsG0580024540.01.T01:intron | 30.0% | |
| ATTGGAATTAGCAAAAGTGA+TGG | + | Chr5:6169630-6169649 | MsG0580024540.01.T01:intron | 30.0% | |
| CAACTTATGAAAACAGCTTA+TGG | - | Chr5:6170448-6170467 | None:intergenic | 30.0% | |
| CTGCATAAAACAAAATGGAA+CGG | - | Chr5:6170220-6170239 | None:intergenic | 30.0% | |
| GTCATTGCATATAATCCTAA+TGG | - | Chr5:6168799-6168818 | None:intergenic | 30.0% | |
| TATCAACCAAGAAATATGTC+AGG | + | Chr5:6170262-6170281 | MsG0580024540.01.T01:intron | 30.0% | |
| TCCTCATTTGGGTAATTATA+AGG | - | Chr5:6168827-6168846 | None:intergenic | 30.0% | |
| TGCATAAAACAAAATGGAAC+GGG | - | Chr5:6170219-6170238 | None:intergenic | 30.0% | |
| TGGAAATGAGTTATGATAAG+TGG | - | Chr5:6170385-6170404 | None:intergenic | 30.0% | |
| TTCACCAATTTGACATAATC+AGG | - | Chr5:6171248-6171267 | None:intergenic | 30.0% | |
| TTGAGATTTAACTCATGGTT+CGG | - | Chr5:6168736-6168755 | None:intergenic | 30.0% | |
| TTGTCTACAAAGAAGTCTTT+CGG | + | Chr5:6169169-6169188 | MsG0580024540.01.T01:intron | 30.0% | |
| ! | AGTCTTTCGGAATTTAAGAT+AGG | + | Chr5:6169182-6169201 | MsG0580024540.01.T01:intron | 30.0% |
| ! | CTTGGTTGATATAAAAGAGA+TGG | - | Chr5:6170253-6170272 | None:intergenic | 30.0% |
| ! | CTTTATGAAGTATCTGCTAA+GGG | + | Chr5:6171805-6171824 | MsG0580024540.01.T01:three_prime_UTR | 30.0% |
| !! | AAGTTTTTGTTTGACTGTCA+TGG | + | Chr5:6171775-6171794 | MsG0580024540.01.T01:three_prime_UTR | 30.0% |
| !! | TTTTTGTTTGCAGGATTTTG+GGG | + | Chr5:6171665-6171684 | MsG0580024540.01.T01:intron | 30.0% |
| !!! | AGTTTTGAATTAGATGGAGA+TGG | - | Chr5:6168926-6168945 | None:intergenic | 30.0% |
| !!! | TCCCTTTTTTTTTTGTTTGC+AGG | + | Chr5:6171656-6171675 | MsG0580024540.01.T01:intron | 30.0% |
| ACATACCCTGACATATTTCT+TGG | - | Chr5:6170271-6170290 | None:intergenic | 35.0% | |
| ATCAATCTTGCACAACTACA+TGG | - | Chr5:6171516-6171535 | None:intergenic | 35.0% | |
| ATCAGATGTTTGTCCAAACA+GGG | - | Chr5:6170355-6170374 | None:intergenic | 35.0% | |
| ATGCTGCAAAACAACATTGT+AGG | - | Chr5:6171703-6171722 | None:intergenic | 35.0% | |
| ATTGTAATTTAGGCCCTGTT+TGG | + | Chr5:6170339-6170358 | MsG0580024540.01.T01:intron | 35.0% | |
| CAACCTTGAGATTTAACTCA+TGG | - | Chr5:6168741-6168760 | None:intergenic | 35.0% | |
| CAAGTACGAAATTCCTCATT+TGG | - | Chr5:6168839-6168858 | None:intergenic | 35.0% | |
| CATGAGTTAAATCTCAAGGT+TGG | + | Chr5:6168739-6168758 | MsG0580024540.01.T01:intron | 35.0% | |
| CCAACCTGATTATGTCAAAT+TGG | + | Chr5:6171241-6171260 | MsG0580024540.01.T01:CDS | 35.0% | |
| CCAATTTGACATAATCAGGT+TGG | - | Chr5:6171244-6171263 | None:intergenic | 35.0% | |
| CCTTAGCAGATACTTCATAA+AGG | - | Chr5:6171807-6171826 | None:intergenic | 35.0% | |
| GAACCATGAGTTAAATCTCA+AGG | + | Chr5:6168735-6168754 | MsG0580024540.01.T01:CDS | 35.0% | |
| GCCTTATAATTACCCAAATG+AGG | + | Chr5:6168823-6168842 | MsG0580024540.01.T01:intron | 35.0% | |
| GGACAACCTGTTAAAAATGT+TGG | + | Chr5:6169016-6169035 | MsG0580024540.01.T01:intron | 35.0% | |
| GTAGTTATTACTAAGGTGAC+CGG | - | Chr5:6170816-6170835 | None:intergenic | 35.0% | |
| TATCAGATGTTTGTCCAAAC+AGG | - | Chr5:6170356-6170375 | None:intergenic | 35.0% | |
| TCAACTCTCAACACTTGAAT+CGG | - | Chr5:6169674-6169693 | None:intergenic | 35.0% | |
| TGAACACCGTAAAATCTTCA+GGG | + | Chr5:6168707-6168726 | MsG0580024540.01.T01:CDS | 35.0% | |
| TTGATTCAGAAGGTAAAGCT+AGG | + | Chr5:6171531-6171550 | MsG0580024540.01.T01:CDS | 35.0% | |
| TTTACGGTGTTCAGAAATTC+TGG | - | Chr5:6168700-6168719 | None:intergenic | 35.0% | |
| ! | CCAAAACCCATATTTTCACA+TGG | + | Chr5:6169049-6169068 | MsG0580024540.01.T01:intron | 35.0% |
| ! | CCATGTGAAAATATGGGTTT+TGG | - | Chr5:6169052-6169071 | None:intergenic | 35.0% |
| ! | CCTTTATGAAGTATCTGCTA+AGG | + | Chr5:6171804-6171823 | MsG0580024540.01.T01:three_prime_UTR | 35.0% |
| ! | TTGTGCAAGATTGATTCAGA+AGG | + | Chr5:6171521-6171540 | MsG0580024540.01.T01:CDS | 35.0% |
| ! | TTTGTTATGCAGTGAAGAAG+AGG | + | Chr5:6171034-6171053 | MsG0580024540.01.T01:intron | 35.0% |
| !! | ATGCTGATTTGCAAAGATGA+AGG | + | Chr5:6169121-6169140 | MsG0580024540.01.T01:intron | 35.0% |
| !! | GCTGTTTTCATAAGTTGTTG+TGG | + | Chr5:6170451-6170470 | MsG0580024540.01.T01:intron | 35.0% |
| !!! | CGTTCCATTTTGTTTTATGC+AGG | + | Chr5:6170218-6170237 | MsG0580024540.01.T01:intron | 35.0% |
| AAAGCAGTCATGATGTCCAT+TGG | - | Chr5:6171104-6171123 | None:intergenic | 40.0% | |
| AAATAAGCTGAAGACGGCTA+AGG | + | Chr5:6170485-6170504 | MsG0580024540.01.T01:intron | 40.0% | |
| AATGGATGTGCACAAGGAAT+TGG | - | Chr5:6171376-6171395 | None:intergenic | 40.0% | |
| AGCTATACATGAGACACACA+AGG | - | Chr5:6170962-6170981 | None:intergenic | 40.0% | |
| ATGGAGTCAGAGTCAATCTT+TGG | - | Chr5:6168907-6168926 | None:intergenic | 40.0% | |
| ATTTGGGAATTGGGAGCAAA+TGG | - | Chr5:6171394-6171413 | None:intergenic | 40.0% | |
| CATAAGCACGAGACTTTCTA+AGG | - | Chr5:6171136-6171155 | None:intergenic | 40.0% | |
| CTGAACACCGTAAAATCTTC+AGG | + | Chr5:6168706-6168725 | MsG0580024540.01.T01:CDS | 40.0% | |
| CTTAGAAAGTCTCGTGCTTA+TGG | + | Chr5:6171134-6171153 | MsG0580024540.01.T01:CDS | 40.0% | |
| GATGCACGGGAAGTAAATTA+TGG | - | Chr5:6169905-6169924 | None:intergenic | 40.0% | |
| GGAACACGTCTCAAAGTAAA+TGG | - | Chr5:6169958-6169977 | None:intergenic | 40.0% | |
| TGAGACGTGTTCCGTAAAAT+TGG | + | Chr5:6169965-6169984 | MsG0580024540.01.T01:intron | 40.0% | |
| TGTCTCAAGATTTATGCTCC+TGG | + | Chr5:6170897-6170916 | MsG0580024540.01.T01:intron | 40.0% | |
| TTCAGAAGGTAAAGCTAGGA+AGG | + | Chr5:6171535-6171554 | MsG0580024540.01.T01:CDS | 40.0% | |
| !! | ATCAGGTTGGTCACAATCTT+CGG | - | Chr5:6171231-6171250 | None:intergenic | 40.0% |
| AGAAAGTCTCGTGCTTATGG+TGG | + | Chr5:6171137-6171156 | MsG0580024540.01.T01:CDS | 45.0% | |
| AGCTGGTATGTACACTCTCA+CGG | + | Chr5:6170157-6170176 | MsG0580024540.01.T01:intron | 45.0% | |
| ATGCTCTTGTGTGGTTGTCA+GGG | + | Chr5:6171565-6171584 | MsG0580024540.01.T01:CDS | 45.0% | |
| CAGAGACGGTTTCAATTCGA+TGG | - | Chr5:6170103-6170122 | None:intergenic | 45.0% | |
| GATAAAACTACGGGCCTAGT+TGG | - | Chr5:6170728-6170747 | None:intergenic | 45.0% | |
| GGTAAAGCTAGGAAGGTTAC+CGG | + | Chr5:6171542-6171561 | MsG0580024540.01.T01:CDS | 45.0% | |
| ! | TCTGGAGTGAGAATCTCATC+AGG | - | Chr5:6168682-6168701 | None:intergenic | 45.0% |
| !! | TTGTTTGCAGGATTTTGGGG+AGG | + | Chr5:6171668-6171687 | MsG0580024540.01.T01:intron | 45.0% |
| !!! | TATTTATTTTATTGATTTTT+GGG | + | Chr5:6171481-6171500 | MsG0580024540.01.T01:intron | 5.0% |
| !!! | TTATTTATTTTATTGATTTT+TGG | + | Chr5:6171480-6171499 | MsG0580024540.01.T01:intron | 5.0% |
| AACATTGTGCTCTGCGCAGA+GGG | - | Chr5:6171273-6171292 | None:intergenic | 50.0% | |
| AACGGGGCCTAAATCCAACT+AGG | + | Chr5:6170711-6170730 | MsG0580024540.01.T01:intron | 50.0% | |
| ACACGTGAAGTAACGCGTGA+AGG | - | Chr5:6169091-6169110 | None:intergenic | 50.0% | |
| ATTTAGACCCGTGCGATGCA+CGG | - | Chr5:6169919-6169938 | None:intergenic | 50.0% | |
| CACGCGTTACTTCACGTGTT+GGG | + | Chr5:6169092-6169111 | MsG0580024540.01.T01:intron | 50.0% | |
| CTACGGGCCTAGTTGGATTT+AGG | - | Chr5:6170721-6170740 | None:intergenic | 50.0% | |
| CTTGCACGAGGTCTTCATGA+AGG | + | Chr5:6171161-6171180 | MsG0580024540.01.T01:CDS | 50.0% | |
| CTTGTGTGGTTGTCAGGGTA+TGG | + | Chr5:6171570-6171589 | MsG0580024540.01.T01:intron | 50.0% | |
| GATGCTCTTGTGTGGTTGTC+AGG | + | Chr5:6171564-6171583 | MsG0580024540.01.T01:CDS | 50.0% | |
| GGAATTGCAGCAGCAACAAC+AGG | - | Chr5:6171074-6171093 | None:intergenic | 50.0% | |
| GGAGCAAATGGATGTGCACA+AGG | - | Chr5:6171382-6171401 | None:intergenic | 50.0% | |
| GTTCCAAGTGCAAAGACCCT+TGG | + | Chr5:6171305-6171324 | MsG0580024540.01.T01:CDS | 50.0% | |
| GTTGTTGCTGCTGCAATTCC+AGG | + | Chr5:6171074-6171093 | MsG0580024540.01.T01:CDS | 50.0% | |
| TAACATTGTGCTCTGCGCAG+AGG | - | Chr5:6171274-6171293 | None:intergenic | 50.0% | |
| TCACGCGTTACTTCACGTGT+TGG | + | Chr5:6169091-6169110 | MsG0580024540.01.T01:intron | 50.0% | |
| TCTCCAAGGGTCTTTGCACT+TGG | - | Chr5:6171311-6171330 | None:intergenic | 50.0% | |
| TGCAAAGACCCTTGGAGAGT+GGG | + | Chr5:6171313-6171332 | MsG0580024540.01.T01:CDS | 50.0% | |
| TTTACTTCCCGTGCATCGCA+CGG | + | Chr5:6169908-6169927 | MsG0580024540.01.T01:CDS | 50.0% | |
| ! | CGGCGACCCTGAAGATTTTA+CGG | - | Chr5:6168716-6168735 | None:intergenic | 50.0% |
| ! | GTGAGAGTGTACATACCAGC+TGG | - | Chr5:6170158-6170177 | None:intergenic | 50.0% |
| !! | GACAACCACACAAGAGCATC+CGG | - | Chr5:6171564-6171583 | None:intergenic | 50.0% |
| ACCAGCTGGATGCGATTTGC+AGG | - | Chr5:6170144-6170163 | None:intergenic | 55.0% | |
| GCTGGATGCGATTTGCAGGA+AGG | - | Chr5:6170140-6170159 | None:intergenic | 55.0% | |
| GGATGCGATTTGCAGGAAGG+CGG | - | Chr5:6170137-6170156 | None:intergenic | 55.0% | |
| GGTTACCGGATGCTCTTGTG+TGG | + | Chr5:6171556-6171575 | MsG0580024540.01.T01:CDS | 55.0% | |
| GTGCAAAGACCCTTGGAGAG+TGG | + | Chr5:6171312-6171331 | MsG0580024540.01.T01:CDS | 55.0% | |
| TCCTGCAAATCGCATCCAGC+TGG | + | Chr5:6170140-6170159 | MsG0580024540.01.T01:intron | 55.0% | |
| TGCAATTCCAGGCGAGCCAA+TGG | + | Chr5:6171085-6171104 | MsG0580024540.01.T01:CDS | 55.0% | |
| TTACTTCCCGTGCATCGCAC+GGG | + | Chr5:6169909-6169928 | MsG0580024540.01.T01:CDS | 55.0% | |
| TTGCAGGAAGGCGGAGATAG+AGG | - | Chr5:6170128-6170147 | None:intergenic | 55.0% | |
| TTTAGACCCGTGCGATGCAC+GGG | - | Chr5:6169918-6169937 | None:intergenic | 55.0% | |
| ! | CGGAGATAGAGGCACAGAGA+CGG | - | Chr5:6170117-6170136 | None:intergenic | 55.0% |
| ! | GCTTATGGTGGTCTTGCACG+AGG | + | Chr5:6171149-6171168 | MsG0580024540.01.T01:CDS | 55.0% |
| !! | ATGATGTCCATTGGCTCGCC+TGG | - | Chr5:6171095-6171114 | None:intergenic | 55.0% |
| AAGACCCTTGGAGAGTGGGC+TGG | + | Chr5:6171317-6171336 | MsG0580024540.01.T01:CDS | 60.0% | |
| GCAACAAGACTGCGCGAGCA+TGG | - | Chr5:6171454-6171473 | None:intergenic | 60.0% | |
| TACGCCAGCCCACTCTCCAA+GGG | - | Chr5:6171324-6171343 | None:intergenic | 60.0% | |
| TTACGCCAGCCCACTCTCCA+AGG | - | Chr5:6171325-6171344 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 6168607 | 6171883 | 6168607 | ID=MsG0580024540.01;Name=MsG0580024540.01 |
| Chr5 | mRNA | 6168607 | 6171883 | 6168607 | ID=MsG0580024540.01.T01;Parent=MsG0580024540.01;Name=MsG0580024540.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.6|0.8|0.75|0.6|5|146|213 |
| Chr5 | exon | 6168607 | 6168756 | 6168607 | ID=MsG0580024540.01.T01:exon:25744;Parent=MsG0580024540.01.T01 |
| Chr5 | exon | 6169900 | 6169970 | 6169900 | ID=MsG0580024540.01.T01:exon:25745;Parent=MsG0580024540.01.T01 |
| Chr5 | exon | 6171046 | 6171340 | 6171046 | ID=MsG0580024540.01.T01:exon:25746;Parent=MsG0580024540.01.T01 |
| Chr5 | exon | 6171521 | 6171586 | 6171521 | ID=MsG0580024540.01.T01:exon:25747;Parent=MsG0580024540.01.T01 |
| Chr5 | exon | 6171678 | 6171883 | 6171678 | ID=MsG0580024540.01.T01:exon:25748;Parent=MsG0580024540.01.T01 |
| Chr5 | CDS | 6168607 | 6168756 | 6168607 | ID=MsG0580024540.01.T01:cds;Parent=MsG0580024540.01.T01 |
| Chr5 | CDS | 6169900 | 6169970 | 6169900 | ID=MsG0580024540.01.T01:cds;Parent=MsG0580024540.01.T01 |
| Chr5 | CDS | 6171046 | 6171340 | 6171046 | ID=MsG0580024540.01.T01:cds;Parent=MsG0580024540.01.T01 |
| Chr5 | CDS | 6171521 | 6171586 | 6171521 | ID=MsG0580024540.01.T01:cds;Parent=MsG0580024540.01.T01 |
| Chr5 | CDS | 6171678 | 6171737 | 6171678 | ID=MsG0580024540.01.T01:cds;Parent=MsG0580024540.01.T01 |
| Chr5 | three_prime_UTR | 6171738 | 6171883 | 6171738 | ID=MsG0580024540.01.T01:three_prime_utr;Parent=MsG0580024540.01.T01 |
| Gene Sequence |
| Protein sequence |
