Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017958.01.T01 | XP_003603846.1 | 98.291 | 585 | 8 | 2 | 1 | 585 | 1 | 583 | 0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017958.01.T01 | Q9FII2 | 57.627 | 590 | 217 | 12 | 1 | 585 | 2 | 563 | 0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000001.01 | MsG0380017958.01 | 0.810822 | 9.523069e-51 | 5.799587e-48 |
| MsG0180000195.01 | MsG0380017958.01 | 0.803828 | 2.893058e-49 | 1.468510e-46 |
| MsG0180001173.01 | MsG0380017958.01 | 0.813411 | 2.594191e-51 | 1.692951e-48 |
| MsG0180005921.01 | MsG0380017958.01 | 0.817574 | 3.073005e-52 | 2.246196e-49 |
| MsG0280011014.01 | MsG0380017958.01 | 0.805943 | 1.045777e-49 | 5.605109e-47 |
| MsG0380012471.01 | MsG0380017958.01 | 0.817976 | 2.493066e-52 | 1.842506e-49 |
| MsG0380013834.01 | MsG0380017958.01 | 0.802061 | 6.706886e-49 | 3.253966e-46 |
| MsG0380015677.01 | MsG0380017958.01 | 0.809127 | 2.206444e-50 | 1.284786e-47 |
| MsG0380017958.01 | MsG0480022325.01 | 0.803215 | 3.877328e-49 | 1.937288e-46 |
| MsG0380017958.01 | MsG0480023832.01 | 0.822126 | 2.799140e-53 | 2.322062e-50 |
| MsG0380017958.01 | MsG0580027091.01 | 0.822086 | 2.858946e-53 | 2.368908e-50 |
| MsG0380017958.01 | MsG0780036663.01 | 0.841617 | 4.262741e-58 | 6.298818e-55 |
| MsG0380017958.01 | MsG0780038603.01 | 0.811952 | 5.412581e-51 | 3.396396e-48 |
| MsG0380017958.01 | MsG0780039137.01 | 0.820427 | 6.899783e-53 | 5.458022e-50 |
| MsG0380017958.01 | MsG0780039905.01 | 0.811321 | 7.423529e-51 | 4.580772e-48 |
| MsG0380017958.01 | MsG0780040044.01 | 0.807372 | 5.219248e-50 | 2.902017e-47 |
| MsG0380017958.01 | MsG0780040261.01 | 0.827918 | 1.199419e-54 | 1.174227e-51 |
| MsG0380017958.01 | MsG0880042520.01 | 0.802935 | 4.429511e-49 | 2.197387e-46 |
| MsG0380017958.01 | MsG0880042552.01 | 0.804429 | 2.169507e-49 | 1.118303e-46 |
| MsG0380017958.01 | MsG0880044782.01 | 0.810882 | 9.242474e-51 | 5.637916e-48 |
| MsG0280008909.01 | MsG0380017958.01 | 0.807221 | 5.618741e-50 | 3.111997e-47 |
| MsG0280009748.01 | MsG0380017958.01 | 0.811229 | 7.772477e-51 | 4.784737e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017958.01.T01 | MTR_3g115870 | 98.291 | 585 | 8 | 2 | 1 | 585 | 1 | 583 | 0.0 | 1182 |
| MsG0380017958.01.T01 | MTR_3g032780 | 46.111 | 180 | 82 | 7 | 337 | 509 | 134 | 305 | 2.69e-32 | 127 |
| MsG0380017958.01.T01 | MTR_3g032780 | 32.275 | 189 | 65 | 6 | 109 | 287 | 23 | 158 | 2.38e-14 | 75.1 |
| MsG0380017958.01.T01 | MTR_3g032830 | 41.481 | 135 | 49 | 4 | 144 | 278 | 31 | 135 | 2.36e-19 | 85.1 |
| MsG0380017958.01.T01 | MTR_1g096890 | 46.465 | 99 | 44 | 3 | 104 | 199 | 66 | 158 | 3.25e-19 | 85.5 |
| MsG0380017958.01.T01 | MTR_2g019230 | 26.590 | 346 | 188 | 16 | 130 | 459 | 42 | 337 | 5.06e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017958.01.T01 | AT5G42350 | 57.627 | 590 | 217 | 12 | 1 | 585 | 2 | 563 | 0.0 | 696 |
| MsG0380017958.01.T01 | AT5G42360 | 57.360 | 591 | 217 | 14 | 1 | 585 | 2 | 563 | 0.0 | 684 |
Find 137 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATAGAACGAGGTTTC+TGG | 0.203043 | 3:-102638244 | MsG0380017958.01.T01:CDS |
| ACAAGGCTGTTAGAAAATTA+TGG | 0.209106 | 3:-102638091 | MsG0380017958.01.T01:CDS |
| TGGGATTTCAGTCCATTTAT+TGG | 0.210827 | 3:+102638358 | None:intergenic |
| AAGAATAATAACAGAAGTTT+AGG | 0.215193 | 3:-102639451 | MsG0380017958.01.T01:CDS |
| TGAAGCTTCTGTCTCATTAA+AGG | 0.220103 | 3:+102638532 | None:intergenic |
| GTCGAGATGTTCAAAATATT+TGG | 0.220382 | 3:-102637963 | MsG0380017958.01.T01:CDS |
| TATTCTTCTTCCTCAACTTC+TGG | 0.240058 | 3:+102639467 | None:intergenic |
| CTCTGATGGCTTTGAGAACT+TGG | 0.265795 | 3:+102638653 | None:intergenic |
| ATGATTCTATCTCCAATAAA+TGG | 0.276427 | 3:-102638370 | MsG0380017958.01.T01:CDS |
| TGCTAGATCAATTCCTATAC+TGG | 0.280796 | 3:-102638702 | MsG0380017958.01.T01:CDS |
| ATGGGGTGAGAGATAGGTTT+TGG | 0.284109 | 3:-102639222 | MsG0380017958.01.T01:CDS |
| GTGATAGCTGTTGGAGGTCT+TGG | 0.313867 | 3:-102638428 | MsG0380017958.01.T01:CDS |
| CCAAAATCAAAAGGCAATCT+TGG | 0.323718 | 3:+102638338 | None:intergenic |
| AGAATAATAACAGAAGTTTA+GGG | 0.334053 | 3:-102639450 | MsG0380017958.01.T01:CDS |
| GAAGATGATGATGATGTAAA+TGG | 0.345095 | 3:-102639424 | MsG0380017958.01.T01:CDS |
| TGCGAAGGTGATGGTCAAAT+TGG | 0.346582 | 3:-102638122 | MsG0380017958.01.T01:CDS |
| GTGCATTACTGCCACAGATT+TGG | 0.346897 | 3:+102637833 | None:intergenic |
| ATATCCCTTGCCTTCTTCAC+TGG | 0.349807 | 3:+102639294 | None:intergenic |
| CTGTTGGAGGTCTTGGATCT+TGG | 0.351613 | 3:-102638421 | MsG0380017958.01.T01:CDS |
| TGTTCTAGCTTGACTAACTT+TGG | 0.359425 | 3:-102638818 | MsG0380017958.01.T01:CDS |
| TGGATCTTGGGATGAGCCTC+TGG | 0.359515 | 3:-102638408 | MsG0380017958.01.T01:CDS |
| GTCTACAACAGCAGTATCTT+GGG | 0.364959 | 3:+102639255 | None:intergenic |
| GTTGTAGACTGCTTCTCATA+TGG | 0.371643 | 3:-102639241 | MsG0380017958.01.T01:CDS |
| TCTCATATGGGGTGAGAGAT+AGG | 0.373731 | 3:-102639228 | MsG0380017958.01.T01:CDS |
| GTTCTAGCTTGACTAACTTT+GGG | 0.374792 | 3:-102638817 | MsG0380017958.01.T01:CDS |
| GGGAGTCTTTGAAGTCAGTT+TGG | 0.376868 | 3:-102638681 | MsG0380017958.01.T01:CDS |
| AATCCATGGTTATTTCTGTT+TGG | 0.377652 | 3:-102638989 | MsG0380017958.01.T01:CDS |
| AGAGCAAAAGCCGTCTTTAA+CGG | 0.384562 | 3:+102638964 | None:intergenic |
| TGTTGGAGGTCTTGGATCTT+GGG | 0.387164 | 3:-102638420 | MsG0380017958.01.T01:CDS |
| TTCCAGTCCATTGGGGCATC+AGG | 0.390853 | 3:+102638023 | None:intergenic |
| TTGTAGACTGCTTCTCATAT+GGG | 0.396000 | 3:-102639240 | MsG0380017958.01.T01:CDS |
| AGTCTACAACAGCAGTATCT+TGG | 0.397671 | 3:+102639254 | None:intergenic |
| CAAGATGATATCTTCATTGT+TGG | 0.400840 | 3:-102638845 | MsG0380017958.01.T01:CDS |
| CAAGGCTGTTAGAAAATTAT+GGG | 0.403762 | 3:-102638090 | MsG0380017958.01.T01:CDS |
| ATACAGCATTCCAGTCCATT+GGG | 0.409548 | 3:+102638015 | None:intergenic |
| TTGGGATGAGCCTCTGGACT+CGG | 0.410836 | 3:-102638402 | MsG0380017958.01.T01:CDS |
| GCTGACACTAGTGAAGAATT+AGG | 0.411961 | 3:-102639346 | MsG0380017958.01.T01:CDS |
| TTAGCCCCTTGACAAAATCT+TGG | 0.413630 | 3:-102638748 | MsG0380017958.01.T01:CDS |
| ACCCCACCAATCTTCGATCT+TGG | 0.416311 | 3:+102638611 | None:intergenic |
| CTTCTCAGCTGGAGGAATCT+AGG | 0.424773 | 3:+102639028 | None:intergenic |
| GTGTGTCGAAACGTCTTGTT+AGG | 0.436949 | 3:-102639498 | MsG0380017958.01.T01:CDS |
| CAAAATCAAAAGGCAATCTT+GGG | 0.439993 | 3:+102638339 | None:intergenic |
| TGATATTCTTGAAATGTGTT+TGG | 0.442464 | 3:-102639122 | MsG0380017958.01.T01:CDS |
| CCCAAACTTGTATCTTCAAA+AGG | 0.445947 | 3:-102638173 | MsG0380017958.01.T01:CDS |
| ATGTCTAAGTCTGTATGGTC+GGG | 0.446356 | 3:-102639389 | MsG0380017958.01.T01:CDS |
| TTCATCATTGTCTGGTAGAA+AGG | 0.446634 | 3:-102638513 | MsG0380017958.01.T01:CDS |
| CGGGGTGGAGGTTGCAAGGT+AGG | 0.447498 | 3:-102639370 | MsG0380017958.01.T01:CDS |
| CGTCTCATCGAAAGCTTATG+AGG | 0.451222 | 3:+102638569 | None:intergenic |
| TAGGAGATTCGAGCACTAGA+AGG | 0.461721 | 3:-102639327 | MsG0380017958.01.T01:CDS |
| CACATTTCAAGAATATCATC+TGG | 0.462231 | 3:+102639127 | None:intergenic |
| TTAAAATGTCTAAGTCTGTA+TGG | 0.463105 | 3:-102639394 | MsG0380017958.01.T01:CDS |
| ATCCTGATGCCCCAATGGAC+TGG | 0.466397 | 3:-102638025 | MsG0380017958.01.T01:CDS |
| CTAGATTCCTCCAGCTGAGA+AGG | 0.479024 | 3:-102639027 | MsG0380017958.01.T01:CDS |
| CAAAATATTTGGCCAGGTGT+TGG | 0.480058 | 3:-102637952 | MsG0380017958.01.T01:CDS |
| CTTGACTAACTTTGGGAATG+TGG | 0.480411 | 3:-102638810 | MsG0380017958.01.T01:CDS |
| ACAAGCCCTCCCTTCTCAGC+TGG | 0.484387 | 3:+102639017 | None:intergenic |
| AGATCTAGTTCCAGTGAAGA+AGG | 0.484722 | 3:-102639304 | MsG0380017958.01.T01:CDS |
| AGTCTGTATGGTCGGGGTGG+AGG | 0.485366 | 3:-102639382 | MsG0380017958.01.T01:CDS |
| ACAGAAGCTTCATCATTGTC+TGG | 0.493014 | 3:-102638521 | MsG0380017958.01.T01:CDS |
| CAAACTGGAATCATATTTCA+AGG | 0.495507 | 3:-102637896 | MsG0380017958.01.T01:CDS |
| ACTTCAAAGACTCCCAGTAT+AGG | 0.496120 | 3:+102638689 | None:intergenic |
| ATGTGACTGATATGTCAAAC+TGG | 0.499848 | 3:-102637911 | MsG0380017958.01.T01:CDS |
| CAAGCAATCCCAAAATCAAA+AGG | 0.504738 | 3:+102638329 | None:intergenic |
| CTGTTTGGTGCCGTTAAAGA+CGG | 0.505369 | 3:-102638974 | MsG0380017958.01.T01:CDS |
| AATGTCTAAGTCTGTATGGT+CGG | 0.505704 | 3:-102639390 | MsG0380017958.01.T01:CDS |
| GATGTTCAAAATATTTGGCC+AGG | 0.508249 | 3:-102637958 | MsG0380017958.01.T01:CDS |
| GCTTGTTCTGGAGTTGTATG+TGG | 0.509231 | 3:-102638311 | MsG0380017958.01.T01:CDS |
| GTCTGTCCTGCCGACTCTGA+TGG | 0.511999 | 3:+102638639 | None:intergenic |
| ATGTACAGAGACTTCAGTCC+AGG | 0.516456 | 3:+102638046 | None:intergenic |
| TGGGATGAGCCTCTGGACTC+GGG | 0.518314 | 3:-102638401 | MsG0380017958.01.T01:CDS |
| TTCCAAGATCGAAGATTGGT+GGG | 0.519154 | 3:-102638613 | MsG0380017958.01.T01:CDS |
| AGAAGGCAAGGGATATAAAC+CGG | 0.520228 | 3:-102639287 | MsG0380017958.01.T01:CDS |
| AATACAGCATTCCAGTCCAT+TGG | 0.520453 | 3:+102638014 | None:intergenic |
| GATGATATCTTCATTGTTGG+AGG | 0.522513 | 3:-102638842 | MsG0380017958.01.T01:CDS |
| GAACCATGTCACTCATGAGC+TGG | 0.523197 | 3:-102637874 | MsG0380017958.01.T01:CDS |
| GAATCTAGGTGTGGTGGTCA+AGG | 0.526973 | 3:+102639042 | None:intergenic |
| GCGAAGGTGATGGTCAAATT+GGG | 0.531631 | 3:-102638121 | MsG0380017958.01.T01:CDS |
| TTCCTCCAGCTGAGAAGGGA+GGG | 0.533740 | 3:-102639022 | MsG0380017958.01.T01:CDS |
| TGTTCATGCTCTCCGTGTCA+TGG | 0.534966 | 3:-102638145 | MsG0380017958.01.T01:CDS |
| GTATCTTGGGGACCACAAAC+CGG | 0.535061 | 3:+102639268 | None:intergenic |
| GGACTGGAATGCTGTATTTG+TGG | 0.537265 | 3:-102638009 | MsG0380017958.01.T01:CDS |
| TGGATGTGTCTCAGAATCAA+TGG | 0.539598 | 3:-102638925 | MsG0380017958.01.T01:CDS |
| AAGGGATATAAACCGGTTTG+TGG | 0.541362 | 3:-102639280 | MsG0380017958.01.T01:CDS |
| TGGTCGGGGTGGAGGTTGCA+AGG | 0.541770 | 3:-102639374 | MsG0380017958.01.T01:CDS |
| CTCTGGTGAGATACATGCGT+TGG | 0.548321 | 3:-102638945 | MsG0380017958.01.T01:CDS |
| CAAGTTCAGAATTCTTTCTG+TGG | 0.549015 | 3:+102639191 | None:intergenic |
| TCATGTACACGAGGTGGGAT+CGG | 0.551178 | 3:+102638203 | None:intergenic |
| TCAAATTGGGCGCCGAAACA+AGG | 0.554063 | 3:-102638108 | MsG0380017958.01.T01:CDS |
| TGTACATCCTGATGCCCCAA+TGG | 0.556992 | 3:-102638030 | MsG0380017958.01.T01:CDS |
| GTGTCATGGTGCGAAGGTGA+TGG | 0.563001 | 3:-102638131 | MsG0380017958.01.T01:CDS |
| TAGATCTCATGTATCTTACC+TGG | 0.568444 | 3:-102638064 | MsG0380017958.01.T01:CDS |
| TCAAAGCCATCAGAGTCGGC+AGG | 0.570392 | 3:-102638645 | MsG0380017958.01.T01:CDS |
| GGAGTGTCAGCCAGAAGTTG+AGG | 0.573267 | 3:-102639477 | MsG0380017958.01.T01:CDS |
| TAGTTCCAGTGAAGAAGGCA+AGG | 0.575434 | 3:-102639299 | MsG0380017958.01.T01:CDS |
| TGTCTCAGAATCAATGGCAT+AGG | 0.576749 | 3:-102638919 | MsG0380017958.01.T01:CDS |
| CAATGGCATAGGATCGAGGC+TGG | 0.578406 | 3:-102638908 | MsG0380017958.01.T01:CDS |
| GCTCATTCAAGACGCACAGA+GGG | 0.579808 | 3:-102638781 | MsG0380017958.01.T01:CDS |
| CGTTGTCAAGAAGATTTCCA+CGG | 0.582410 | 3:-102639529 | MsG0380017958.01.T01:CDS |
| TTTCCAAGATCGAAGATTGG+TGG | 0.582976 | 3:-102638614 | MsG0380017958.01.T01:CDS |
| GCTAGATCAATTCCTATACT+GGG | 0.584021 | 3:-102638701 | MsG0380017958.01.T01:CDS |
| CTAACTTTGGGAATGTGGAT+CGG | 0.584910 | 3:-102638805 | MsG0380017958.01.T01:CDS |
| TAGATTCCTCCAGCTGAGAA+GGG | 0.585115 | 3:-102639026 | MsG0380017958.01.T01:CDS |
| GTTCTCAAAGCCATCAGAGT+CGG | 0.597147 | 3:-102638649 | MsG0380017958.01.T01:CDS |
| TTCTTGAAATGTGTTTGGTG+AGG | 0.598539 | 3:-102639117 | MsG0380017958.01.T01:CDS |
| ATCATCTTGTACACTAGCAA+CGG | 0.599730 | 3:+102638859 | None:intergenic |
| CTCTCCGTGTCATGGTGCGA+AGG | 0.600634 | 3:-102638137 | MsG0380017958.01.T01:CDS |
| CAGCTGGAGGAATCTAGGTG+TGG | 0.604486 | 3:+102639033 | None:intergenic |
| ATTCCTCCAGCTGAGAAGGG+AGG | 0.604833 | 3:-102639023 | MsG0380017958.01.T01:CDS |
| ATGATATCTTCATTGTTGGA+GGG | 0.604868 | 3:-102638841 | MsG0380017958.01.T01:CDS |
| CATGTCACTCATGAGCTGGA+TGG | 0.605014 | 3:-102637870 | MsG0380017958.01.T01:CDS |
| AGCCCTCCCTTCTCAGCTGG+AGG | 0.607915 | 3:+102639020 | None:intergenic |
| CTGGAGGAATCTAGGTGTGG+TGG | 0.609056 | 3:+102639036 | None:intergenic |
| AGGGCTTGTATCAAAATCCA+TGG | 0.610481 | 3:-102639003 | MsG0380017958.01.T01:CDS |
| TGTAGACTGCTTCTCATATG+GGG | 0.611271 | 3:-102639239 | MsG0380017958.01.T01:CDS |
| TGTCTAAGTCTGTATGGTCG+GGG | 0.611593 | 3:-102639388 | MsG0380017958.01.T01:CDS |
| ATCACCTTCGCACCATGACA+CGG | 0.615387 | 3:+102638133 | None:intergenic |
| GAATAATAACAGAAGTTTAG+GGG | 0.615388 | 3:-102639449 | MsG0380017958.01.T01:CDS |
| TCCAAGATCGAAGATTGGTG+GGG | 0.617033 | 3:-102638612 | MsG0380017958.01.T01:CDS |
| TGGGGTATCAGACGTCTATG+AGG | 0.619349 | 3:-102638594 | MsG0380017958.01.T01:CDS |
| CTAAGTCTGTATGGTCGGGG+TGG | 0.623244 | 3:-102639385 | MsG0380017958.01.T01:CDS |
| CATCCAGCTCATGAGTGACA+TGG | 0.631026 | 3:+102637871 | None:intergenic |
| AGTACTCATGTACACGAGGT+GGG | 0.635968 | 3:+102638198 | None:intergenic |
| GCATTCATCAAACTTGTCAA+CGG | 0.641767 | 3:+102639091 | None:intergenic |
| GAATCAATGGCATAGGATCG+AGG | 0.652526 | 3:-102638912 | MsG0380017958.01.T01:CDS |
| TACAGCATTCCAGTCCATTG+GGG | 0.663088 | 3:+102638016 | None:intergenic |
| ATCATGCGTGACCAAATCTG+TGG | 0.663969 | 3:-102637844 | MsG0380017958.01.T01:CDS |
| TAGTACTCATGTACACGAGG+TGG | 0.667289 | 3:+102638197 | None:intergenic |
| TATATTTCTCCCGAGTCCAG+AGG | 0.671151 | 3:+102638392 | None:intergenic |
| AGTTCCAGTGAAGAAGGCAA+GGG | 0.675538 | 3:-102639298 | MsG0380017958.01.T01:CDS |
| GCACCAAACAGAAATAACCA+TGG | 0.685377 | 3:+102638986 | None:intergenic |
| TCTACAACAGCAGTATCTTG+GGG | 0.685630 | 3:+102639256 | None:intergenic |
| AGCTCATTCAAGACGCACAG+AGG | 0.685959 | 3:-102638782 | MsG0380017958.01.T01:CDS |
| TACACGAGGTGGGATCGGAG+TGG | 0.686719 | 3:+102638208 | None:intergenic |
| CTCATTCAAGACGCACAGAG+GGG | 0.717390 | 3:-102638780 | MsG0380017958.01.T01:CDS |
| GGGTAGTACTCATGTACACG+AGG | 0.729419 | 3:+102638194 | None:intergenic |
| GCAGCATATGACATAGAACG+AGG | 0.730757 | 3:-102638251 | MsG0380017958.01.T01:CDS |
| TCGACACACTCAGAGAACCG+TGG | 0.746329 | 3:+102639512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAATAACAGAAGTTT+AGG | - | Chr3:102637938-102637957 | MsG0380017958.01.T01:CDS | 20.0% |
| !! | AGAATAATAACAGAAGTTTA+GGG | - | Chr3:102637939-102637958 | MsG0380017958.01.T01:CDS | 20.0% |
| !!! | TCCAAAAATCAAGTTTTTAT+CGG | + | Chr3:102639406-102639425 | None:intergenic | 20.0% |
| ! | ATGATTCTATCTCCAATAAA+TGG | - | Chr3:102639019-102639038 | MsG0380017958.01.T01:CDS | 25.0% |
| ! | GAATAATAACAGAAGTTTAG+GGG | - | Chr3:102637940-102637959 | MsG0380017958.01.T01:CDS | 25.0% |
| ! | TGATATTCTTGAAATGTGTT+TGG | - | Chr3:102638267-102638286 | MsG0380017958.01.T01:CDS | 25.0% |
| ! | TTAAAATGTCTAAGTCTGTA+TGG | - | Chr3:102637995-102638014 | MsG0380017958.01.T01:CDS | 25.0% |
| ACAAGGCTGTTAGAAAATTA+TGG | - | Chr3:102639298-102639317 | MsG0380017958.01.T01:CDS | 30.0% | |
| ATGATATCTTCATTGTTGGA+GGG | - | Chr3:102638548-102638567 | MsG0380017958.01.T01:CDS | 30.0% | |
| CAAAATCAAAAGGCAATCTT+GGG | + | Chr3:102639053-102639072 | None:intergenic | 30.0% | |
| CAAACTGGAATCATATTTCA+AGG | - | Chr3:102639493-102639512 | MsG0380017958.01.T01:CDS | 30.0% | |
| CAAGATGATATCTTCATTGT+TGG | - | Chr3:102638544-102638563 | MsG0380017958.01.T01:CDS | 30.0% | |
| CAAGGCTGTTAGAAAATTAT+GGG | - | Chr3:102639299-102639318 | MsG0380017958.01.T01:CDS | 30.0% | |
| CACATTTCAAGAATATCATC+TGG | + | Chr3:102638265-102638284 | None:intergenic | 30.0% | |
| GTCGAGATGTTCAAAATATT+TGG | - | Chr3:102639426-102639445 | MsG0380017958.01.T01:CDS | 30.0% | |
| ! | AAAGAGTAGTCGAAGATTTT+TGG | - | Chr3:102638939-102638958 | MsG0380017958.01.T01:CDS | 30.0% |
| ! | GAAGATGATGATGATGTAAA+TGG | - | Chr3:102637965-102637984 | MsG0380017958.01.T01:CDS | 30.0% |
| ! | GCCGATAAAAACTTGATTTT+TGG | - | Chr3:102639402-102639421 | MsG0380017958.01.T01:CDS | 30.0% |
| !! | AATCCATGGTTATTTCTGTT+TGG | - | Chr3:102638400-102638419 | MsG0380017958.01.T01:CDS | 30.0% |
| !! | ACCTTTTGAAGATACAAGTT+TGG | + | Chr3:102639220-102639239 | None:intergenic | 30.0% |
| !! | CCTTTTGAAGATACAAGTTT+GGG | + | Chr3:102639219-102639238 | None:intergenic | 30.0% |
| !! | CTTTTGAAGATACAAGTTTG+GGG | + | Chr3:102639218-102639237 | None:intergenic | 30.0% |
| !!! | ATTTTCTAACAGCCTTGTTT+CGG | + | Chr3:102639296-102639315 | None:intergenic | 30.0% |
| !!! | CAAGATTGCCTTTTGATTTT+GGG | - | Chr3:102639052-102639071 | MsG0380017958.01.T01:CDS | 30.0% |
| AATGTCTAAGTCTGTATGGT+CGG | - | Chr3:102637999-102638018 | MsG0380017958.01.T01:CDS | 35.0% | |
| ATCATCTTGTACACTAGCAA+CGG | + | Chr3:102638533-102638552 | None:intergenic | 35.0% | |
| ATGTGACTGATATGTCAAAC+TGG | - | Chr3:102639478-102639497 | MsG0380017958.01.T01:CDS | 35.0% | |
| CAAGCAATCCCAAAATCAAA+AGG | + | Chr3:102639063-102639082 | None:intergenic | 35.0% | |
| CAAGTTCAGAATTCTTTCTG+TGG | + | Chr3:102638201-102638220 | None:intergenic | 35.0% | |
| CCAAAATCAAAAGGCAATCT+TGG | + | Chr3:102639054-102639073 | None:intergenic | 35.0% | |
| CCCAAACTTGTATCTTCAAA+AGG | - | Chr3:102639216-102639235 | MsG0380017958.01.T01:CDS | 35.0% | |
| GATGATATCTTCATTGTTGG+AGG | - | Chr3:102638547-102638566 | MsG0380017958.01.T01:CDS | 35.0% | |
| GATGTTCAAAATATTTGGCC+AGG | - | Chr3:102639431-102639450 | MsG0380017958.01.T01:CDS | 35.0% | |
| GCATTCATCAAACTTGTCAA+CGG | + | Chr3:102638301-102638320 | None:intergenic | 35.0% | |
| GCTAGATCAATTCCTATACT+GGG | - | Chr3:102638688-102638707 | MsG0380017958.01.T01:CDS | 35.0% | |
| TAGATCTCATGTATCTTACC+TGG | - | Chr3:102639325-102639344 | MsG0380017958.01.T01:CDS | 35.0% | |
| TATTCTTCTTCCTCAACTTC+TGG | + | Chr3:102637925-102637944 | None:intergenic | 35.0% | |
| TGAAGCTTCTGTCTCATTAA+AGG | + | Chr3:102638860-102638879 | None:intergenic | 35.0% | |
| TGCTAGATCAATTCCTATAC+TGG | - | Chr3:102638687-102638706 | MsG0380017958.01.T01:CDS | 35.0% | |
| TGGGATTTCAGTCCATTTAT+TGG | + | Chr3:102639034-102639053 | None:intergenic | 35.0% | |
| TTCATCATTGTCTGGTAGAA+AGG | - | Chr3:102638876-102638895 | MsG0380017958.01.T01:CDS | 35.0% | |
| TTGTAGACTGCTTCTCATAT+GGG | - | Chr3:102638149-102638168 | MsG0380017958.01.T01:CDS | 35.0% | |
| ! | CACGACTTGTTTGCAAAAAA+TGG | - | Chr3:102638320-102638339 | MsG0380017958.01.T01:CDS | 35.0% |
| ! | GACTTGTTTGCAAAAAATGG+AGG | - | Chr3:102638323-102638342 | MsG0380017958.01.T01:CDS | 35.0% |
| ! | TTACGCCAAGATTTTGTCAA+GGG | + | Chr3:102638649-102638668 | None:intergenic | 35.0% |
| ! | TTCTTGAAATGTGTTTGGTG+AGG | - | Chr3:102638272-102638291 | MsG0380017958.01.T01:CDS | 35.0% |
| ! | TTTACGCCAAGATTTTGTCA+AGG | + | Chr3:102638650-102638669 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGACTAACTTT+GGG | - | Chr3:102638572-102638591 | MsG0380017958.01.T01:CDS | 35.0% |
| !! | TGTTCTAGCTTGACTAACTT+TGG | - | Chr3:102638571-102638590 | MsG0380017958.01.T01:CDS | 35.0% |
| !!! | AGATTTTTGGTGATAGCTGT+TGG | - | Chr3:102638952-102638971 | MsG0380017958.01.T01:CDS | 35.0% |
| !!! | CCAAGATTGCCTTTTGATTT+TGG | - | Chr3:102639051-102639070 | MsG0380017958.01.T01:CDS | 35.0% |
| AATACAGCATTCCAGTCCAT+TGG | + | Chr3:102639378-102639397 | None:intergenic | 40.0% | |
| ACAGAAGCTTCATCATTGTC+TGG | - | Chr3:102638868-102638887 | MsG0380017958.01.T01:CDS | 40.0% | |
| ACTTCAAAGACTCCCAGTAT+AGG | + | Chr3:102638703-102638722 | None:intergenic | 40.0% | |
| AGAAGGCAAGGGATATAAAC+CGG | - | Chr3:102638102-102638121 | MsG0380017958.01.T01:CDS | 40.0% | |
| AGAGCAAAAGCCGTCTTTAA+CGG | + | Chr3:102638428-102638447 | None:intergenic | 40.0% | |
| AGGGCTTGTATCAAAATCCA+TGG | - | Chr3:102638386-102638405 | MsG0380017958.01.T01:CDS | 40.0% | |
| AGTCTACAACAGCAGTATCT+TGG | + | Chr3:102638138-102638157 | None:intergenic | 40.0% | |
| ATACAGCATTCCAGTCCATT+GGG | + | Chr3:102639377-102639396 | None:intergenic | 40.0% | |
| ATGACATAGAACGAGGTTTC+TGG | - | Chr3:102639145-102639164 | MsG0380017958.01.T01:CDS | 40.0% | |
| ATGTCTAAGTCTGTATGGTC+GGG | - | Chr3:102638000-102638019 | MsG0380017958.01.T01:CDS | 40.0% | |
| CAAAATATTTGGCCAGGTGT+TGG | - | Chr3:102639437-102639456 | MsG0380017958.01.T01:CDS | 40.0% | |
| CAGTGAAAAAATCCAACACC+TGG | + | Chr3:102639452-102639471 | None:intergenic | 40.0% | |
| CGTTGTCAAGAAGATTTCCA+CGG | - | Chr3:102637860-102637879 | MsG0380017958.01.T01:CDS | 40.0% | |
| GCACCAAACAGAAATAACCA+TGG | + | Chr3:102638406-102638425 | None:intergenic | 40.0% | |
| GCTGACACTAGTGAAGAATT+AGG | - | Chr3:102638043-102638062 | MsG0380017958.01.T01:CDS | 40.0% | |
| GTCTACAACAGCAGTATCTT+GGG | + | Chr3:102638137-102638156 | None:intergenic | 40.0% | |
| GTTGTAGACTGCTTCTCATA+TGG | - | Chr3:102638148-102638167 | MsG0380017958.01.T01:CDS | 40.0% | |
| TCTACAACAGCAGTATCTTG+GGG | + | Chr3:102638136-102638155 | None:intergenic | 40.0% | |
| TGGATGTGTCTCAGAATCAA+TGG | - | Chr3:102638464-102638483 | MsG0380017958.01.T01:CDS | 40.0% | |
| TGTAGACTGCTTCTCATATG+GGG | - | Chr3:102638150-102638169 | MsG0380017958.01.T01:CDS | 40.0% | |
| TGTCTCAGAATCAATGGCAT+AGG | - | Chr3:102638470-102638489 | MsG0380017958.01.T01:CDS | 40.0% | |
| TTAGCCCCTTGACAAAATCT+TGG | - | Chr3:102638641-102638660 | MsG0380017958.01.T01:CDS | 40.0% | |
| TTCCAAGATCGAAGATTGGT+GGG | - | Chr3:102638776-102638795 | MsG0380017958.01.T01:CDS | 40.0% | |
| TTTCCAAGATCGAAGATTGG+TGG | - | Chr3:102638775-102638794 | MsG0380017958.01.T01:CDS | 40.0% | |
| ! | AGATCTAGTTCCAGTGAAGA+AGG | - | Chr3:102638085-102638104 | MsG0380017958.01.T01:CDS | 40.0% |
| ! | CGTTTTCCAAGATCGAAGAT+TGG | - | Chr3:102638772-102638791 | MsG0380017958.01.T01:CDS | 40.0% |
| ! | CTAACTTTGGGAATGTGGAT+CGG | - | Chr3:102638584-102638603 | MsG0380017958.01.T01:CDS | 40.0% |
| ! | CTTGACTAACTTTGGGAATG+TGG | - | Chr3:102638579-102638598 | MsG0380017958.01.T01:CDS | 40.0% |
| ! | TACGCCAAGATTTTGTCAAG+GGG | + | Chr3:102638648-102638667 | None:intergenic | 40.0% |
| !! | AAGGGATATAAACCGGTTTG+TGG | - | Chr3:102638109-102638128 | MsG0380017958.01.T01:CDS | 40.0% |
| !! | TTTTTGGTGATAGCTGTTGG+AGG | - | Chr3:102638955-102638974 | MsG0380017958.01.T01:CDS | 40.0% |
| !!! | GATTTTGGGATTGCTTGTTC+TGG | - | Chr3:102639066-102639085 | MsG0380017958.01.T01:CDS | 40.0% |
| AGTACTCATGTACACGAGGT+GGG | + | Chr3:102639194-102639213 | None:intergenic | 45.0% | |
| AGTTCCAGTGAAGAAGGCAA+GGG | - | Chr3:102638091-102638110 | MsG0380017958.01.T01:CDS | 45.0% | |
| ATATCCCTTGCCTTCTTCAC+TGG | + | Chr3:102638098-102638117 | None:intergenic | 45.0% | |
| ATCATGCGTGACCAAATCTG+TGG | - | Chr3:102639545-102639564 | MsG0380017958.01.T01:CDS | 45.0% | |
| ATGTACAGAGACTTCAGTCC+AGG | + | Chr3:102639346-102639365 | None:intergenic | 45.0% | |
| CGTCTCATCGAAAGCTTATG+AGG | + | Chr3:102638823-102638842 | None:intergenic | 45.0% | |
| GAATCAATGGCATAGGATCG+AGG | - | Chr3:102638477-102638496 | MsG0380017958.01.T01:CDS | 45.0% | |
| GCAGCATATGACATAGAACG+AGG | - | Chr3:102639138-102639157 | MsG0380017958.01.T01:CDS | 45.0% | |
| GGACTGGAATGCTGTATTTG+TGG | - | Chr3:102639380-102639399 | MsG0380017958.01.T01:CDS | 45.0% | |
| GTGCATTACTGCCACAGATT+TGG | + | Chr3:102639559-102639578 | None:intergenic | 45.0% | |
| GTTCTCAAAGCCATCAGAGT+CGG | - | Chr3:102638740-102638759 | MsG0380017958.01.T01:CDS | 45.0% | |
| TACAGCATTCCAGTCCATTG+GGG | + | Chr3:102639376-102639395 | None:intergenic | 45.0% | |
| TAGATTCCTCCAGCTGAGAA+GGG | - | Chr3:102638363-102638382 | MsG0380017958.01.T01:CDS | 45.0% | |
| TAGGAGATTCGAGCACTAGA+AGG | - | Chr3:102638062-102638081 | MsG0380017958.01.T01:CDS | 45.0% | |
| TAGTACTCATGTACACGAGG+TGG | + | Chr3:102639195-102639214 | None:intergenic | 45.0% | |
| TAGTTCCAGTGAAGAAGGCA+AGG | - | Chr3:102638090-102638109 | MsG0380017958.01.T01:CDS | 45.0% | |
| TATATTTCTCCCGAGTCCAG+AGG | + | Chr3:102639000-102639019 | None:intergenic | 45.0% | |
| TCCAAGATCGAAGATTGGTG+GGG | - | Chr3:102638777-102638796 | MsG0380017958.01.T01:CDS | 45.0% | |
| TCTCATATGGGGTGAGAGAT+AGG | - | Chr3:102638161-102638180 | MsG0380017958.01.T01:CDS | 45.0% | |
| TGTCTAAGTCTGTATGGTCG+GGG | - | Chr3:102638001-102638020 | MsG0380017958.01.T01:CDS | 45.0% | |
| TGTTGGAGGTCTTGGATCTT+GGG | - | Chr3:102638969-102638988 | MsG0380017958.01.T01:CDS | 45.0% | |
| ! | ATGGGGTGAGAGATAGGTTT+TGG | - | Chr3:102638167-102638186 | MsG0380017958.01.T01:CDS | 45.0% |
| ! | GCGAAGGTGATGGTCAAATT+GGG | - | Chr3:102639268-102639287 | MsG0380017958.01.T01:CDS | 45.0% |
| ! | GTGTGTCGAAACGTCTTGTT+AGG | - | Chr3:102637891-102637910 | MsG0380017958.01.T01:CDS | 45.0% |
| ! | GTTAAAGACGGCTTTTGCTC+TGG | - | Chr3:102638427-102638446 | MsG0380017958.01.T01:CDS | 45.0% |
| ! | TGCGAAGGTGATGGTCAAAT+TGG | - | Chr3:102639267-102639286 | MsG0380017958.01.T01:CDS | 45.0% |
| !! | CTCTGATGGCTTTGAGAACT+TGG | + | Chr3:102638739-102638758 | None:intergenic | 45.0% |
| !! | CTGTTTGGTGCCGTTAAAGA+CGG | - | Chr3:102638415-102638434 | MsG0380017958.01.T01:CDS | 45.0% |
| !! | GCTTGTTCTGGAGTTGTATG+TGG | - | Chr3:102639078-102639097 | MsG0380017958.01.T01:CDS | 45.0% |
| !! | GGGAGTCTTTGAAGTCAGTT+TGG | - | Chr3:102638708-102638727 | MsG0380017958.01.T01:CDS | 45.0% |
| ACCCCACCAATCTTCGATCT+TGG | + | Chr3:102638781-102638800 | None:intergenic | 50.0% | |
| AGCTCATTCAAGACGCACAG+AGG | - | Chr3:102638607-102638626 | MsG0380017958.01.T01:CDS | 50.0% | |
| ATCACCTTCGCACCATGACA+CGG | + | Chr3:102639259-102639278 | None:intergenic | 50.0% | |
| CATCCAGCTCATGAGTGACA+TGG | + | Chr3:102639521-102639540 | None:intergenic | 50.0% | |
| CATGTCACTCATGAGCTGGA+TGG | - | Chr3:102639519-102639538 | MsG0380017958.01.T01:CDS | 50.0% | |
| CTAGATTCCTCCAGCTGAGA+AGG | - | Chr3:102638362-102638381 | MsG0380017958.01.T01:CDS | 50.0% | |
| CTCATTCAAGACGCACAGAG+GGG | - | Chr3:102638609-102638628 | MsG0380017958.01.T01:CDS | 50.0% | |
| CTCTGGTGAGATACATGCGT+TGG | - | Chr3:102638444-102638463 | MsG0380017958.01.T01:CDS | 50.0% | |
| CTGTTGGAGGTCTTGGATCT+TGG | - | Chr3:102638968-102638987 | MsG0380017958.01.T01:CDS | 50.0% | |
| CTTCTCAGCTGGAGGAATCT+AGG | + | Chr3:102638364-102638383 | None:intergenic | 50.0% | |
| GAACCATGTCACTCATGAGC+TGG | - | Chr3:102639515-102639534 | MsG0380017958.01.T01:CDS | 50.0% | |
| GAATCTAGGTGTGGTGGTCA+AGG | + | Chr3:102638350-102638369 | None:intergenic | 50.0% | |
| GCTCATTCAAGACGCACAGA+GGG | - | Chr3:102638608-102638627 | MsG0380017958.01.T01:CDS | 50.0% | |
| GGGTAGTACTCATGTACACG+AGG | + | Chr3:102639198-102639217 | None:intergenic | 50.0% | |
| GTATCTTGGGGACCACAAAC+CGG | + | Chr3:102638124-102638143 | None:intergenic | 50.0% | |
| GTGATAGCTGTTGGAGGTCT+TGG | - | Chr3:102638961-102638980 | MsG0380017958.01.T01:CDS | 50.0% | |
| TCATGTACACGAGGTGGGAT+CGG | + | Chr3:102639189-102639208 | None:intergenic | 50.0% | |
| TGTACATCCTGATGCCCCAA+TGG | - | Chr3:102639359-102639378 | MsG0380017958.01.T01:CDS | 50.0% | |
| TGTTCATGCTCTCCGTGTCA+TGG | - | Chr3:102639244-102639263 | MsG0380017958.01.T01:CDS | 50.0% | |
| ! | TGGGGTATCAGACGTCTATG+AGG | - | Chr3:102638795-102638814 | MsG0380017958.01.T01:CDS | 50.0% |
| !! | GGGTGAGAGATAGGTTTTGG+AGG | - | Chr3:102638170-102638189 | MsG0380017958.01.T01:CDS | 50.0% |
| !! | TCAAATTGGGCGCCGAAACA+AGG | - | Chr3:102639281-102639300 | MsG0380017958.01.T01:CDS | 50.0% |
| !!! | AGGCTGGTTTTCTCAGAGGA+AGG | - | Chr3:102638497-102638516 | MsG0380017958.01.T01:CDS | 50.0% |
| !!! | ATCGAGGCTGGTTTTCTCAG+AGG | - | Chr3:102638493-102638512 | MsG0380017958.01.T01:CDS | 50.0% |
| ATCCTGATGCCCCAATGGAC+TGG | - | Chr3:102639364-102639383 | MsG0380017958.01.T01:CDS | 55.0% | |
| ATTCCTCCAGCTGAGAAGGG+AGG | - | Chr3:102638366-102638385 | MsG0380017958.01.T01:CDS | 55.0% | |
| CAATGGCATAGGATCGAGGC+TGG | - | Chr3:102638481-102638500 | MsG0380017958.01.T01:CDS | 55.0% | |
| CAGCTGGAGGAATCTAGGTG+TGG | + | Chr3:102638359-102638378 | None:intergenic | 55.0% | |
| CTAAGTCTGTATGGTCGGGG+TGG | - | Chr3:102638004-102638023 | MsG0380017958.01.T01:CDS | 55.0% | |
| CTGGAGGAATCTAGGTGTGG+TGG | + | Chr3:102638356-102638375 | None:intergenic | 55.0% | |
| GTGTCATGGTGCGAAGGTGA+TGG | - | Chr3:102639258-102639277 | MsG0380017958.01.T01:CDS | 55.0% | |
| TCAAAGCCATCAGAGTCGGC+AGG | - | Chr3:102638744-102638763 | MsG0380017958.01.T01:CDS | 55.0% | |
| TCGACACACTCAGAGAACCG+TGG | + | Chr3:102637880-102637899 | None:intergenic | 55.0% | |
| TGGATCTTGGGATGAGCCTC+TGG | - | Chr3:102638981-102639000 | MsG0380017958.01.T01:CDS | 55.0% | |
| TTCCTCCAGCTGAGAAGGGA+GGG | - | Chr3:102638367-102638386 | MsG0380017958.01.T01:CDS | 55.0% | |
| TTGGGATGAGCCTCTGGACT+CGG | - | Chr3:102638987-102639006 | MsG0380017958.01.T01:CDS | 55.0% | |
| ! | GGAGTGTCAGCCAGAAGTTG+AGG | - | Chr3:102637912-102637931 | MsG0380017958.01.T01:CDS | 55.0% |
| ! | TTCCAGTCCATTGGGGCATC+AGG | + | Chr3:102639369-102639388 | None:intergenic | 55.0% |
| ACAAGCCCTCCCTTCTCAGC+TGG | + | Chr3:102638375-102638394 | None:intergenic | 60.0% | |
| AGTCTGTATGGTCGGGGTGG+AGG | - | Chr3:102638007-102638026 | MsG0380017958.01.T01:CDS | 60.0% | |
| CTCTCCGTGTCATGGTGCGA+AGG | - | Chr3:102639252-102639271 | MsG0380017958.01.T01:CDS | 60.0% | |
| TACACGAGGTGGGATCGGAG+TGG | + | Chr3:102639184-102639203 | None:intergenic | 60.0% | |
| TGGGATGAGCCTCTGGACTC+GGG | - | Chr3:102638988-102639007 | MsG0380017958.01.T01:CDS | 60.0% | |
| !! | GTCTGTCCTGCCGACTCTGA+TGG | + | Chr3:102638753-102638772 | None:intergenic | 60.0% |
| AGCCCTCCCTTCTCAGCTGG+AGG | + | Chr3:102638372-102638391 | None:intergenic | 65.0% | |
| CGGGGTGGAGGTTGCAAGGT+AGG | - | Chr3:102638019-102638038 | MsG0380017958.01.T01:CDS | 65.0% | |
| TGGTCGGGGTGGAGGTTGCA+AGG | - | Chr3:102638015-102638034 | MsG0380017958.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 102637827 | 102639584 | 102637827 | ID=MsG0380017958.01;Name=MsG0380017958.01 |
| Chr3 | mRNA | 102637827 | 102639584 | 102637827 | ID=MsG0380017958.01.T01;Parent=MsG0380017958.01;Name=MsG0380017958.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|585 |
| Chr3 | exon | 102637827 | 102639584 | 102637827 | ID=MsG0380017958.01.T01:exon:2643;Parent=MsG0380017958.01.T01 |
| Chr3 | CDS | 102637827 | 102639584 | 102637827 | ID=MsG0380017958.01.T01:cds;Parent=MsG0380017958.01.T01 |
| Gene Sequence |
| Protein sequence |
