Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380018029.01.T01 | MCI12673.1 | 95.294 | 85 | 4 | 0 | 1 | 85 | 24 | 108 | 2.10E-53 | 172 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380018029.01.T01 | Q69NF5 | 80 | 85 | 17 | 0 | 1 | 85 | 414 | 498 | 1.03E-43 | 150 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380018029.01.T01 | G7J7T2 | 100.000 | 85 | 0 | 0 | 1 | 85 | 396 | 480 | 1.57e-53 | 182 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049140.01 | MsG0380018029.01 | 0.800022 | 1.751372e-48 | 8.069089e-46 |
MsG0180000111.01 | MsG0380018029.01 | 0.828177 | 1.039225e-54 | 1.025149e-51 |
MsG0180000983.01 | MsG0380018029.01 | 0.859297 | 4.559076e-63 | 1.198168e-59 |
MsG0180002421.01 | MsG0380018029.01 | 0.804823 | 1.795687e-49 | 9.351561e-47 |
MsG0180003427.01 | MsG0380018029.01 | 0.817490 | 3.209660e-52 | 2.340851e-49 |
MsG0180003485.01 | MsG0380018029.01 | 0.817819 | 2.706204e-52 | 1.991520e-49 |
MsG0180004099.01 | MsG0380018029.01 | 0.810911 | 9.107412e-51 | 5.559883e-48 |
MsG0180004661.01 | MsG0380018029.01 | 0.806759 | 7.038820e-50 | 3.851884e-47 |
MsG0380013636.01 | MsG0380018029.01 | 0.828548 | 8.458664e-55 | 8.434514e-52 |
MsG0380015548.01 | MsG0380018029.01 | 0.805017 | 1.635685e-49 | 8.560343e-47 |
MsG0380015736.01 | MsG0380018029.01 | 0.812720 | 3.678639e-51 | 2.356415e-48 |
MsG0380015825.01 | MsG0380018029.01 | 0.803371 | 3.598875e-49 | 1.805357e-46 |
MsG0380016703.01 | MsG0380018029.01 | 0.809467 | 1.864963e-50 | 1.095824e-47 |
MsG0380017159.01 | MsG0380018029.01 | 0.817884 | 2.616408e-52 | 1.928814e-49 |
MsG0380018029.01 | MsG0480018397.01 | 0.804671 | 1.931599e-49 | 1.001946e-46 |
MsG0380018029.01 | MsG0480020847.01 | 0.806725 | 7.154372e-50 | 3.911877e-47 |
MsG0380018029.01 | MsG0580024748.01 | 0.801177 | 1.018122e-48 | 4.830373e-46 |
MsG0380018029.01 | MsG0580024758.01 | 0.819272 | 1.266918e-52 | 9.704048e-50 |
MsG0380018029.01 | MsG0580025766.01 | 0.804266 | 2.346448e-49 | 1.204460e-46 |
MsG0380018029.01 | MsG0580029298.01 | 0.825069 | 5.730404e-54 | 5.168866e-51 |
MsG0380018029.01 | MsG0780035954.01 | 0.807395 | 5.161727e-50 | 2.871854e-47 |
MsG0380018029.01 | MsG0780037371.01 | 0.806691 | 7.274663e-50 | 3.973978e-47 |
MsG0380018029.01 | MsG0780038373.01 | 0.807812 | 4.209570e-50 | 2.367603e-47 |
MsG0380018029.01 | MsG0780038655.01 | 0.802096 | 6.598612e-49 | 3.204259e-46 |
MsG0380018029.01 | MsG0780041063.01 | 0.843432 | 1.406050e-58 | 2.199514e-55 |
MsG0380018029.01 | MsG0880043637.01 | 0.819373 | 1.201400e-52 | 9.227694e-50 |
MsG0380018029.01 | MsG0880043855.01 | 0.804793 | 1.821060e-49 | 9.476345e-47 |
MsG0380018029.01 | MsG0880045430.01 | 0.827003 | 1.988677e-54 | 1.895577e-51 |
MsG0380018029.01 | MsG0880046446.01 | 0.803680 | 3.104963e-49 | 1.570024e-46 |
MsG0280010352.01 | MsG0380018029.01 | 0.811023 | 8.614550e-51 | 5.274775e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380018029.01.T01 | MTR_3g117500 | 100.000 | 85 | 0 | 0 | 1 | 85 | 396 | 480 | 3.98e-57 | 182 |
MsG0380018029.01.T01 | MTR_4g035975 | 67.059 | 85 | 28 | 0 | 1 | 85 | 401 | 485 | 9.61e-36 | 126 |
MsG0380018029.01.T01 | MTR_7g108925 | 63.095 | 84 | 31 | 0 | 1 | 84 | 110 | 193 | 1.43e-34 | 117 |
MsG0380018029.01.T01 | MTR_4g035930 | 63.529 | 85 | 31 | 0 | 1 | 85 | 379 | 463 | 2.67e-34 | 122 |
MsG0380018029.01.T01 | MTR_3g080810 | 65.882 | 85 | 29 | 0 | 1 | 85 | 405 | 489 | 4.06e-34 | 121 |
MsG0380018029.01.T01 | MTR_4g035955 | 62.353 | 85 | 32 | 0 | 1 | 85 | 378 | 462 | 1.50e-33 | 120 |
MsG0380018029.01.T01 | MTR_8g104820 | 66.279 | 86 | 28 | 1 | 1 | 85 | 401 | 486 | 1.06e-32 | 117 |
MsG0380018029.01.T01 | MTR_5g010000 | 62.353 | 85 | 31 | 1 | 1 | 84 | 403 | 487 | 1.08e-32 | 117 |
MsG0380018029.01.T01 | MTR_5g009970 | 60.000 | 85 | 33 | 1 | 1 | 84 | 303 | 387 | 1.34e-31 | 114 |
MsG0380018029.01.T01 | MTR_5g009970 | 60.000 | 85 | 33 | 1 | 1 | 84 | 404 | 488 | 1.36e-31 | 115 |
MsG0380018029.01.T01 | MTR_1g088190 | 61.176 | 85 | 33 | 0 | 1 | 85 | 390 | 474 | 1.67e-31 | 114 |
MsG0380018029.01.T01 | MTR_5g009970 | 60.000 | 85 | 33 | 1 | 1 | 84 | 235 | 319 | 2.07e-31 | 112 |
MsG0380018029.01.T01 | MTR_5g009970 | 60.000 | 85 | 33 | 1 | 1 | 84 | 330 | 414 | 1.12e-30 | 111 |
MsG0380018029.01.T01 | MTR_3g010330 | 62.353 | 85 | 31 | 1 | 1 | 84 | 391 | 475 | 3.99e-29 | 108 |
MsG0380018029.01.T01 | MTR_8g099410 | 55.814 | 86 | 37 | 1 | 1 | 85 | 402 | 487 | 6.51e-28 | 105 |
MsG0380018029.01.T01 | MTR_8g099410 | 55.814 | 86 | 37 | 1 | 1 | 85 | 402 | 487 | 6.73e-28 | 105 |
MsG0380018029.01.T01 | MTR_0393s0050 | 59.740 | 77 | 30 | 1 | 1 | 76 | 87 | 163 | 4.46e-26 | 95.1 |
MsG0380018029.01.T01 | MTR_1g037340 | 54.651 | 86 | 37 | 2 | 1 | 85 | 393 | 477 | 2.55e-24 | 94.7 |
MsG0380018029.01.T01 | MTR_1g037320 | 51.163 | 86 | 40 | 2 | 1 | 85 | 203 | 287 | 8.57e-23 | 88.6 |
MsG0380018029.01.T01 | MTR_5g093590 | 46.512 | 86 | 45 | 1 | 1 | 85 | 411 | 496 | 2.90e-22 | 89.0 |
MsG0380018029.01.T01 | MTR_3g080190 | 46.512 | 86 | 45 | 1 | 1 | 85 | 416 | 501 | 4.51e-22 | 88.6 |
MsG0380018029.01.T01 | MTR_5g085730 | 45.349 | 86 | 46 | 1 | 1 | 85 | 407 | 492 | 1.01e-21 | 87.4 |
MsG0380018029.01.T01 | MTR_8g075990 | 49.412 | 85 | 39 | 1 | 1 | 85 | 440 | 520 | 1.18e-21 | 87.4 |
MsG0380018029.01.T01 | MTR_4g074960 | 45.349 | 86 | 46 | 1 | 1 | 85 | 403 | 488 | 1.26e-21 | 87.4 |
MsG0380018029.01.T01 | MTR_3g113720 | 44.706 | 85 | 43 | 1 | 1 | 85 | 434 | 514 | 2.30e-21 | 86.7 |
MsG0380018029.01.T01 | MTR_3g090540 | 44.578 | 83 | 43 | 1 | 1 | 83 | 498 | 577 | 5.84e-19 | 79.7 |
MsG0380018029.01.T01 | MTR_3g023740 | 44.186 | 86 | 46 | 2 | 1 | 85 | 391 | 475 | 3.20e-17 | 74.7 |
MsG0380018029.01.T01 | MTR_2g028480 | 43.529 | 85 | 45 | 1 | 1 | 85 | 504 | 585 | 9.09e-17 | 73.6 |
MsG0380018029.01.T01 | MTR_3g105230 | 45.000 | 80 | 42 | 2 | 1 | 79 | 391 | 469 | 2.42e-16 | 72.4 |
MsG0380018029.01.T01 | MTR_4g128810 | 42.353 | 85 | 46 | 1 | 1 | 85 | 248 | 329 | 3.39e-15 | 68.9 |
MsG0380018029.01.T01 | MTR_3g082440 | 41.176 | 85 | 47 | 2 | 1 | 85 | 506 | 587 | 2.72e-14 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380018029.01.T01 | AT4G39010 | 81.176 | 85 | 16 | 0 | 1 | 85 | 402 | 486 | 2.87e-39 | 135 |
MsG0380018029.01.T01 | AT1G70710 | 64.706 | 85 | 30 | 0 | 1 | 85 | 397 | 481 | 3.61e-34 | 122 |
MsG0380018029.01.T01 | AT1G23210 | 61.176 | 85 | 33 | 0 | 1 | 85 | 397 | 481 | 5.27e-33 | 118 |
MsG0380018029.01.T01 | AT1G02800 | 63.095 | 84 | 31 | 0 | 1 | 84 | 410 | 493 | 6.57e-33 | 118 |
MsG0380018029.01.T01 | AT4G02290 | 59.524 | 84 | 34 | 0 | 1 | 84 | 421 | 504 | 8.74e-33 | 118 |
MsG0380018029.01.T01 | AT4G02290 | 58.824 | 85 | 35 | 0 | 1 | 85 | 309 | 393 | 6.98e-32 | 114 |
MsG0380018029.01.T01 | AT4G23560 | 59.524 | 84 | 34 | 0 | 1 | 84 | 386 | 469 | 1.81e-31 | 114 |
MsG0380018029.01.T01 | AT4G38990 | 60.000 | 85 | 34 | 0 | 1 | 85 | 401 | 485 | 4.72e-31 | 113 |
MsG0380018029.01.T01 | AT4G09740 | 59.524 | 84 | 34 | 0 | 1 | 84 | 386 | 469 | 1.01e-30 | 112 |
MsG0380018029.01.T01 | AT4G39000 | 56.471 | 85 | 37 | 0 | 1 | 85 | 398 | 482 | 4.33e-29 | 108 |
MsG0380018029.01.T01 | AT1G22880 | 58.333 | 84 | 35 | 0 | 1 | 84 | 306 | 389 | 7.13e-29 | 106 |
MsG0380018029.01.T01 | AT1G22880 | 58.333 | 84 | 35 | 0 | 1 | 84 | 390 | 473 | 1.46e-28 | 106 |
MsG0380018029.01.T01 | AT1G71380 | 57.143 | 84 | 36 | 0 | 1 | 84 | 390 | 473 | 2.35e-27 | 103 |
MsG0380018029.01.T01 | AT2G44570 | 54.651 | 86 | 38 | 1 | 1 | 85 | 402 | 487 | 3.02e-27 | 103 |
MsG0380018029.01.T01 | AT2G44540 | 50.000 | 86 | 42 | 1 | 1 | 85 | 401 | 486 | 1.52e-24 | 95.5 |
MsG0380018029.01.T01 | AT1G64390 | 51.163 | 86 | 41 | 1 | 1 | 85 | 399 | 484 | 1.65e-24 | 95.5 |
MsG0380018029.01.T01 | AT2G44550 | 47.674 | 86 | 44 | 1 | 1 | 85 | 400 | 485 | 9.86e-24 | 93.2 |
MsG0380018029.01.T01 | AT2G32990 | 48.837 | 86 | 43 | 1 | 1 | 85 | 415 | 500 | 3.76e-23 | 91.7 |
MsG0380018029.01.T01 | AT4G11050 | 47.674 | 86 | 44 | 1 | 1 | 85 | 400 | 485 | 2.15e-22 | 89.7 |
MsG0380018029.01.T01 | AT4G11050 | 47.674 | 86 | 44 | 1 | 1 | 85 | 400 | 485 | 2.18e-22 | 89.7 |
MsG0380018029.01.T01 | AT4G11050 | 47.674 | 86 | 44 | 1 | 1 | 85 | 400 | 485 | 2.72e-22 | 89.4 |
MsG0380018029.01.T01 | AT1G48930 | 48.837 | 86 | 43 | 1 | 1 | 85 | 404 | 489 | 3.86e-22 | 89.0 |
MsG0380018029.01.T01 | AT2G44560 | 52.326 | 86 | 40 | 1 | 1 | 85 | 401 | 486 | 9.77e-22 | 87.8 |
MsG0380018029.01.T01 | AT1G75680 | 47.500 | 80 | 38 | 1 | 1 | 80 | 430 | 505 | 5.47e-21 | 85.5 |
MsG0380018029.01.T01 | AT1G19940 | 45.238 | 84 | 42 | 1 | 1 | 84 | 421 | 500 | 3.45e-20 | 83.2 |
MsG0380018029.01.T01 | AT1G19940 | 45.238 | 84 | 42 | 1 | 1 | 84 | 421 | 500 | 3.45e-20 | 83.2 |
MsG0380018029.01.T01 | AT1G65610 | 44.048 | 84 | 44 | 1 | 1 | 84 | 505 | 585 | 1.29e-18 | 79.0 |
MsG0380018029.01.T01 | AT5G49720 | 42.353 | 85 | 46 | 1 | 1 | 85 | 501 | 582 | 1.58e-15 | 70.1 |
MsG0380018029.01.T01 | AT3G43860 | 41.860 | 86 | 48 | 2 | 1 | 85 | 395 | 479 | 1.56e-14 | 67.4 |
MsG0380018029.01.T01 | AT3G43860 | 41.860 | 86 | 48 | 2 | 1 | 85 | 395 | 479 | 1.56e-14 | 67.4 |
MsG0380018029.01.T01 | AT4G24260 | 38.824 | 85 | 48 | 1 | 1 | 85 | 502 | 582 | 4.63e-13 | 63.2 |
Find 28 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCATCTCTACCTTCTATTA+AGG | 0.295970 | 3:+103520303 | MsG0380018029.01.T01:CDS |
TATATTAATGCGCCATTTGT+TGG | 0.343277 | 3:+103520484 | MsG0380018029.01.T01:CDS |
TTATCTTACATGGTTGGTTA+TGG | 0.346424 | 3:+103520247 | None:intergenic |
ATATTAATGCGCCATTTGTT+GGG | 0.347405 | 3:+103520485 | MsG0380018029.01.T01:CDS |
CCTAACCCAAATGTTCTTGT+AGG | 0.353533 | 3:+103520382 | MsG0380018029.01.T01:CDS |
ATAGCTCCTACAAGAACATT+TGG | 0.366293 | 3:-103520388 | None:intergenic |
CCTACAAGAACATTTGGGTT+AGG | 0.401102 | 3:-103520382 | None:intergenic |
CAACAGATTGCTTGCAAGGA+AGG | 0.449168 | 3:+103520334 | MsG0380018029.01.T01:CDS |
GGAGCTATTGTGGGAGGACC+TGG | 0.473308 | 3:+103520403 | MsG0380018029.01.T01:CDS |
TAGCTCCTACAAGAACATTT+GGG | 0.479600 | 3:-103520387 | None:intergenic |
TGAGGATGGTCCTTAATAGA+AGG | 0.486620 | 3:-103520313 | None:intergenic |
TTGGGTTTATCTTACATGGT+TGG | 0.498954 | 3:+103520241 | None:intergenic |
TGTTCTTGTAGGAGCTATTG+TGG | 0.507021 | 3:+103520393 | MsG0380018029.01.T01:CDS |
ATATGCTAAACCCCAACAAA+TGG | 0.512665 | 3:-103520496 | None:intergenic |
ATGATGTTTATGTGGATGAC+AGG | 0.521412 | 3:+103520431 | MsG0380018029.01.T01:CDS |
TCCTCAACAGATTGCTTGCA+AGG | 0.531094 | 3:+103520330 | MsG0380018029.01.T01:CDS |
AAATGGCGCATTAATATATG+TGG | 0.534377 | 3:-103520479 | None:intergenic |
GTTCTTGTAGGAGCTATTGT+GGG | 0.555313 | 3:+103520394 | MsG0380018029.01.T01:CDS |
TCCTTGCAAGCAATCTGTTG+AGG | 0.555459 | 3:-103520331 | None:intergenic |
ACATAAACATCATCTTCTCC+AGG | 0.567710 | 3:-103520421 | None:intergenic |
TATTAATGCGCCATTTGTTG+GGG | 0.570106 | 3:+103520486 | MsG0380018029.01.T01:CDS |
GGCGCATTAATATATGTGGT+TGG | 0.580585 | 3:-103520475 | None:intergenic |
CTTGTAGGAGCTATTGTGGG+AGG | 0.586975 | 3:+103520397 | MsG0380018029.01.T01:CDS |
TGGAGAAGATGATGTTTATG+TGG | 0.587154 | 3:+103520423 | MsG0380018029.01.T01:CDS |
TGCAAGCAATCTGTTGAGGA+TGG | 0.591228 | 3:-103520327 | None:intergenic |
CCACGATGATGAATACGTTG+TGG | 0.695422 | 3:-103520280 | None:intergenic |
CCACAACGTATTCATCATCG+TGG | 0.724350 | 3:+103520280 | MsG0380018029.01.T01:CDS |
TGATGTTTATGTGGATGACA+GGG | 0.726322 | 3:+103520432 | MsG0380018029.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAATGGCGCATTAATATATG+TGG | - | Chr3:103520482-103520501 | None:intergenic | 30.0% | |
ATATTAATGCGCCATTTGTT+GGG | + | Chr3:103520485-103520504 | MsG0380018029.01.T01:CDS | 30.0% | |
TATATTAATGCGCCATTTGT+TGG | + | Chr3:103520484-103520503 | MsG0380018029.01.T01:CDS | 30.0% | |
ACATAAACATCATCTTCTCC+AGG | - | Chr3:103520424-103520443 | None:intergenic | 35.0% | |
ATAGCTCCTACAAGAACATT+TGG | - | Chr3:103520391-103520410 | None:intergenic | 35.0% | |
ATGATGTTTATGTGGATGAC+AGG | + | Chr3:103520431-103520450 | MsG0380018029.01.T01:CDS | 35.0% | |
CTCATCTCTACCTTCTATTA+AGG | + | Chr3:103520303-103520322 | MsG0380018029.01.T01:CDS | 35.0% | |
TAGCTCCTACAAGAACATTT+GGG | - | Chr3:103520390-103520409 | None:intergenic | 35.0% | |
TGATGTTTATGTGGATGACA+GGG | + | Chr3:103520432-103520451 | MsG0380018029.01.T01:CDS | 35.0% | |
TGGAGAAGATGATGTTTATG+TGG | + | Chr3:103520423-103520442 | MsG0380018029.01.T01:CDS | 35.0% | |
! | TATTAATGCGCCATTTGTTG+GGG | + | Chr3:103520486-103520505 | MsG0380018029.01.T01:CDS | 35.0% |
CCTAACCCAAATGTTCTTGT+AGG | + | Chr3:103520382-103520401 | MsG0380018029.01.T01:CDS | 40.0% | |
GGCGCATTAATATATGTGGT+TGG | - | Chr3:103520478-103520497 | None:intergenic | 40.0% | |
GTTCTTGTAGGAGCTATTGT+GGG | + | Chr3:103520394-103520413 | MsG0380018029.01.T01:CDS | 40.0% | |
TGAGGATGGTCCTTAATAGA+AGG | - | Chr3:103520316-103520335 | None:intergenic | 40.0% | |
TGTTCTTGTAGGAGCTATTG+TGG | + | Chr3:103520393-103520412 | MsG0380018029.01.T01:CDS | 40.0% | |
! | CCTACAAGAACATTTGGGTT+AGG | - | Chr3:103520385-103520404 | None:intergenic | 40.0% |
CAACAGATTGCTTGCAAGGA+AGG | + | Chr3:103520334-103520353 | MsG0380018029.01.T01:CDS | 45.0% | |
CCACAACGTATTCATCATCG+TGG | + | Chr3:103520280-103520299 | MsG0380018029.01.T01:CDS | 45.0% | |
CCACGATGATGAATACGTTG+TGG | - | Chr3:103520283-103520302 | None:intergenic | 45.0% | |
TCCTCAACAGATTGCTTGCA+AGG | + | Chr3:103520330-103520349 | MsG0380018029.01.T01:CDS | 45.0% | |
TCCTTGCAAGCAATCTGTTG+AGG | - | Chr3:103520334-103520353 | None:intergenic | 45.0% | |
TGCAAGCAATCTGTTGAGGA+TGG | - | Chr3:103520330-103520349 | None:intergenic | 45.0% | |
CTTGTAGGAGCTATTGTGGG+AGG | + | Chr3:103520397-103520416 | MsG0380018029.01.T01:CDS | 50.0% | |
GGAGCTATTGTGGGAGGACC+TGG | + | Chr3:103520403-103520422 | MsG0380018029.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 103520256 | 103520513 | 103520256 | ID=MsG0380018029.01;Name=MsG0380018029.01 |
Chr3 | mRNA | 103520256 | 103520513 | 103520256 | ID=MsG0380018029.01.T01;Parent=MsG0380018029.01;Name=MsG0380018029.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|85 |
Chr3 | exon | 103520256 | 103520513 | 103520256 | ID=MsG0380018029.01.T01:exon:13474;Parent=MsG0380018029.01.T01 |
Chr3 | CDS | 103520256 | 103520513 | 103520256 | ID=MsG0380018029.01.T01:cds;Parent=MsG0380018029.01.T01 |
Gene Sequence |
Protein sequence |