AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035692.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035692.01.T01 MTR_6g087760 94.585 831 45 0 1 831 1 831 0.0 1598
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035692.01.T01 AT3G24630 41.463 205 102 8 1 198 10 203 4.00e-27 118
MsG0680035692.01.T01 AT3G24630 41.463 205 102 8 1 198 10 203 4.00e-27 118

Find 122 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTCTTCTCTCTTTC+TGG 0.005612 6:-110814901 None:intergenic
TTCTGAGACTAAACTTATTT+TGG 0.076991 6:+110816786 MsG0680035692.01.T01:CDS
ATCCAATACAAGACTCTATT+TGG 0.158315 6:+110816597 MsG0680035692.01.T01:CDS
TCAATCTTTGGTAGGATCTT+AGG 0.207375 6:-110816562 None:intergenic
TTCAAGATTGCAAATCTCTT+TGG 0.228602 6:+110816705 MsG0680035692.01.T01:CDS
GGAACTTAAGAAAGTGATTA+AGG 0.234384 6:+110814546 MsG0680035692.01.T01:CDS
ATTGCAAAGGATTTGTTAAA+AGG 0.236779 6:+110814319 MsG0680035692.01.T01:CDS
TTTGAACACAATTCAGCTTA+TGG 0.266042 6:+110814502 MsG0680035692.01.T01:CDS
ATTCCATTAGTTTCAATCTT+TGG 0.272555 6:-110816574 None:intergenic
GAAAGTGATTAAGGAGAGTT+TGG 0.281612 6:+110814555 MsG0680035692.01.T01:CDS
GCAAATCTCTTTGGGAAGTT+TGG 0.283823 6:+110816714 MsG0680035692.01.T01:CDS
CCACACTCAACAACTCCTTT+TGG 0.288999 6:-110814052 None:intergenic
ACCTCGGCGCGCTTCGTATC+AGG 0.299020 6:+110815065 MsG0680035692.01.T01:CDS
CCCTACACAAGTTAGCAATA+AGG 0.311630 6:-110816680 None:intergenic
GCAAGAAGCTTCGAATAGTA+TGG 0.317136 6:+110814384 MsG0680035692.01.T01:CDS
CTTCAGAAGTGCTTGTGCTT+TGG 0.319474 6:-110814594 None:intergenic
TGCAACAATAGGTTGATAAA+TGG 0.321009 6:+110816844 MsG0680035692.01.T01:CDS
CATCATCAACTGAAGAATTC+TGG 0.321444 6:-110816303 None:intergenic
CCTACACAAGTTAGCAATAA+GGG 0.324395 6:-110816679 None:intergenic
ACAATAGGTTTAGCTGCTTC+AGG 0.328588 6:-110815657 None:intergenic
GATTGACTTGAGCTTGTAGA+AGG 0.330319 6:-110814643 None:intergenic
TGAACCTTCCCTTGGTTTGA+AGG 0.332725 6:-110815169 None:intergenic
CAAGTCAATCTTCTGTTGTT+TGG 0.332774 6:+110814656 MsG0680035692.01.T01:CDS
GAGTTTCTCAATCTTGATAT+TGG 0.338989 6:+110816535 MsG0680035692.01.T01:CDS
CGAAGCCTGTGCTCTCTAAT+AGG 0.344717 6:-110814970 None:intergenic
GATGAAATGCTCTTTCTAGA+TGG 0.352127 6:-110815534 None:intergenic
AGCTCAGAAGTGTCTTTGTC+TGG 0.357390 6:-110816466 None:intergenic
CTACCAAAGATTGAAACTAA+TGG 0.362800 6:+110816571 MsG0680035692.01.T01:CDS
TCAAGATTGCAAATCTCTTT+GGG 0.367770 6:+110816706 MsG0680035692.01.T01:CDS
CTCAAGATCAAGGCGAAATC+AGG 0.377524 6:+110815451 MsG0680035692.01.T01:CDS
CTTGAAACTACTCATTTCAA+TGG 0.383813 6:+110814931 MsG0680035692.01.T01:CDS
TCCATCTTCTTTGCAGCTTG+TGG 0.385624 6:+110814213 MsG0680035692.01.T01:CDS
GTCTTTGTCTGGCTCGAAAT+CGG 0.387248 6:-110816455 None:intergenic
CAATCTTGTTGCAAGGTTGA+TGG 0.390483 6:+110814738 MsG0680035692.01.T01:CDS
CACAAGCACTTCTGAAGGAT+TGG 0.417407 6:+110814600 MsG0680035692.01.T01:CDS
ATGGTCAATAAATGATTTGC+TGG 0.418671 6:-110816506 None:intergenic
GAAAACTCTTCTCGAGGAAC+CGG 0.426957 6:-110815108 None:intergenic
GTGGAAGTCTGAGGAGATAT+AGG 0.427056 6:+110814071 MsG0680035692.01.T01:CDS
GAACTATGCTTTCTTACCTT+CGG 0.429427 6:-110814865 None:intergenic
GAGATATGAAGTGCAACAAT+AGG 0.438346 6:+110816833 MsG0680035692.01.T01:CDS
TGTTTGGTATGACAAACTTT+CGG 0.440918 6:+110814672 MsG0680035692.01.T01:CDS
ATCCAAATAGAGTCTTGTAT+TGG 0.447170 6:-110816599 None:intergenic
TCAATCCTCGACACACTTCG+CGG 0.449222 6:-110815498 None:intergenic
CAAGAAGAAGGAATGAGTTT+CGG 0.458989 6:+110815823 MsG0680035692.01.T01:CDS
TTTAGAAATCCAAAAGCAAA+AGG 0.462194 6:+110815132 MsG0680035692.01.T01:CDS
CAGAAAGAGAGAAGACACTA+AGG 0.462255 6:+110814902 MsG0680035692.01.T01:CDS
AATTGTAATGTTCTTTACCT+TGG 0.464078 6:-110815376 None:intergenic
ACAGATGGAAATGTTCTTGA+AGG 0.464421 6:-110814775 None:intergenic
TTGGTAGTTGAACCTTCCCT+TGG 0.465370 6:-110815177 None:intergenic
AATCTTGTTGCAAGGTTGAT+GGG 0.467441 6:+110814739 MsG0680035692.01.T01:CDS
GGATCATCACATGTCACAAA+TGG 0.467560 6:-110814031 None:intergenic
GGATAATATTTGTGCAATGT+TGG 0.470489 6:+110816807 MsG0680035692.01.T01:CDS
CATCAACCTTGCAACAAGAT+TGG 0.470581 6:-110814737 None:intergenic
CCCTTATTGCTAACTTGTGT+AGG 0.479938 6:+110816679 MsG0680035692.01.T01:CDS
CAAATCCTTTGCAATATCAT+CGG 0.484517 6:-110814311 None:intergenic
CTAACTGTGATGACTCTTGA+AGG 0.485315 6:-110816651 None:intergenic
ATCTTCTTTGCAGCTTGTGG+AGG 0.488367 6:+110814216 MsG0680035692.01.T01:CDS
ATTGATGCAAATGTGAATGA+TGG 0.489421 6:+110814451 MsG0680035692.01.T01:CDS
CAACATGAGAAAAGAGATGA+TGG 0.491361 6:+110815197 MsG0680035692.01.T01:CDS
GTCAAATTCTCACAAAATGA+AGG 0.492656 6:+110814093 MsG0680035692.01.T01:CDS
AAAGAAGAGAAGGTATCAAA+AGG 0.495584 6:+110814169 MsG0680035692.01.T01:CDS
TCCACAAGCTGCAAAGAAGA+TGG 0.495903 6:-110814214 None:intergenic
CCTTATTGCTAACTTGTGTA+GGG 0.510663 6:+110816680 MsG0680035692.01.T01:CDS
CATTAGTTTCAATCTTTGGT+AGG 0.513835 6:-110816570 None:intergenic
TAAGACAAAGTGCCGAAAGC+CGG 0.516544 6:+110814117 MsG0680035692.01.T01:CDS
ATGGAATGTGGAACTGTGGT+TGG 0.517006 6:+110816863 MsG0680035692.01.T01:CDS
CACAAAACCAAAGACACAAA+AGG 0.518586 6:+110815575 MsG0680035692.01.T01:CDS
CGAGGTTTCATGAGTACAAT+CGG 0.522887 6:-110815048 None:intergenic
TCTCAGAAAACCGATACAAA+AGG 0.524589 6:+110815398 MsG0680035692.01.T01:CDS
ACCTCTAGTCTTATTTGCAT+AGG 0.528727 6:-110815929 None:intergenic
CAGCTTGTGGAGGTCTCTAG+AGG 0.534580 6:+110814226 MsG0680035692.01.T01:CDS
GTGGCAAAAGCTCAAGATCA+AGG 0.536217 6:+110815441 MsG0680035692.01.T01:CDS
GTAGTCCTATTAGAGAGCAC+AGG 0.539680 6:+110814965 MsG0680035692.01.T01:CDS
TTTGCAGATAATTGCGAGGA+GGG 0.540057 6:+110816280 MsG0680035692.01.T01:intron
TGGAACTGTGGTTGGAGGCA+TGG 0.542412 6:+110816871 MsG0680035692.01.T01:CDS
CAGATGGAAATGTTCTTGAA+GGG 0.547681 6:-110814774 None:intergenic
CAAAGCACAAGCACTTCTGA+AGG 0.559925 6:+110814595 MsG0680035692.01.T01:CDS
GTCTCTAGAGATGCTTCGTA+AGG 0.563353 6:+110814360 MsG0680035692.01.T01:CDS
ACGAGCTTCCTCAGCAAGGA+TGG 0.565299 6:-110816359 None:intergenic
AAAGTACCAATCTTGTTGCA+AGG 0.570805 6:+110814731 MsG0680035692.01.T01:CDS
TAAACAAGACAAAGAAGAGA+AGG 0.573687 6:+110814159 MsG0680035692.01.T01:CDS
AGATGGAAATGTTCTTGAAG+GGG 0.581235 6:-110814773 None:intergenic
CAAGAAGCTTCGAATAGTAT+GGG 0.582027 6:+110814385 MsG0680035692.01.T01:CDS
ATGATTGAGTCGTGGTCTAG+AGG 0.582241 6:+110814268 MsG0680035692.01.T01:CDS
ATATGATGTGAAAGAAATCA+AGG 0.588240 6:+110815284 MsG0680035692.01.T01:CDS
ATTGACTTGAGCTTGTAGAA+GGG 0.591382 6:-110814642 None:intergenic
ACAAAAGGTTAACAGTTCAA+AGG 0.591951 6:+110815590 MsG0680035692.01.T01:CDS
AAAACCTTCAAACCAAGGGA+AGG 0.592501 6:+110815165 MsG0680035692.01.T01:CDS
ATTGCTGACACCGTCTGTAT+CGG 0.594229 6:+110816427 MsG0680035692.01.T01:CDS
GAAACAAGTTTCACTGACGC+TGG 0.594603 6:-110816389 None:intergenic
GGTGTGTCAATCTCGAACAC+AGG 0.598187 6:-110814844 None:intergenic
CTAAAGGAAAACTCTTCTCG+AGG 0.598786 6:-110815114 None:intergenic
ATAGGTTGATAAATGGAATG+TGG 0.600587 6:+110816851 MsG0680035692.01.T01:CDS
TCTAGAGGTGTGAGGTACGA+TGG 0.603601 6:+110814283 MsG0680035692.01.T01:CDS
CTCTTCAAGTAGTTGTAGAG+AGG 0.610288 6:+110814525 MsG0680035692.01.T01:CDS
GAATGTGGAACTGTGGTTGG+AGG 0.612560 6:+110816866 MsG0680035692.01.T01:CDS
AGAAAGAGAGAAGACACTAA+GGG 0.612920 6:+110814903 MsG0680035692.01.T01:CDS
GATTGAGAAACTCATCTGCA+TGG 0.613355 6:-110816525 None:intergenic
AAAATCCGATGATATTGCAA+AGG 0.617942 6:+110814306 MsG0680035692.01.T01:CDS
CAAGGCTGTTGAAAGCAAGA+AGG 0.619477 6:+110815302 MsG0680035692.01.T01:CDS
TCGATTGAAGAGAAGACAAG+AGG 0.624969 6:+110814408 MsG0680035692.01.T01:CDS
CAGAAAACCGATACAAAAGG+AGG 0.626337 6:+110815401 MsG0680035692.01.T01:CDS
GTGACATGTGATGATCCAAA+AGG 0.628008 6:+110814037 MsG0680035692.01.T01:CDS
CCAAAAGGAGTTGTTGAGTG+TGG 0.631426 6:+110814052 MsG0680035692.01.T01:CDS
GTTCGTAGAAACGTACGAGC+CGG 0.631601 6:+110815089 MsG0680035692.01.T01:CDS
ACCTATGCAAATAAGACTAG+AGG 0.635482 6:+110815928 MsG0680035692.01.T01:CDS
CTACACAAGTTAGCAATAAG+GGG 0.636387 6:-110816678 None:intergenic
GAAAGCCGCGAAGTGTGTCG+AGG 0.637298 6:+110815493 MsG0680035692.01.T01:CDS
CGATTGTACTCATGAAACCT+CGG 0.638305 6:+110815049 MsG0680035692.01.T01:CDS
TCCTGATACGAAGCGCGCCG+AGG 0.641562 6:-110815066 None:intergenic
AAATGATACCATCCTTGCTG+AGG 0.642227 6:+110816351 MsG0680035692.01.T01:CDS
TTGTTGAGTGTGGAAGTCTG+AGG 0.647195 6:+110814062 MsG0680035692.01.T01:CDS
GGTTTCAAAAGCTAAAATTG+TGG 0.654649 6:+110815422 MsG0680035692.01.T01:CDS
TGTCACGAGCTTCCTCAGCA+AGG 0.661150 6:-110816363 None:intergenic
ATCGGTTTCACCGATACAGA+CGG 0.665581 6:-110816437 None:intergenic
ATAAATGGAATGTGGAACTG+TGG 0.666233 6:+110816859 MsG0680035692.01.T01:CDS
TGAACAACATGATTGAGTCG+TGG 0.687574 6:+110814260 MsG0680035692.01.T01:CDS
GTTCGAGATTGACACACCGA+AGG 0.719145 6:+110814849 MsG0680035692.01.T01:CDS
AGTCGTGGTCTAGAGGTGTG+AGG 0.724136 6:+110814275 MsG0680035692.01.T01:CDS
GGTTTCATGAGTACAATCGG+TGG 0.732087 6:-110815045 None:intergenic
ACAAGTTTCACTGACGCTGG+TGG 0.738203 6:-110816386 None:intergenic
AGTAACAGAAGATCTCATCG+TGG 0.778770 6:+110815891 MsG0680035692.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTGTCTCTAAATTTT+CGG - Chr6:110814143-110814162 None:intergenic 15.0%
!! ATTATACTATTTATCCAAAC+AGG - Chr6:110815989-110816008 None:intergenic 20.0%
!! CATATAAGTTCTTATGTATA+TGG + Chr6:110816035-110816054 MsG0680035692.01.T01:intron 20.0%
!! TTATACTATTTATCCAAACA+GGG - Chr6:110815988-110816007 None:intergenic 20.0%
!!! TAAATTTCTAAAATTGTCAC+TGG + Chr6:110815951-110815970 MsG0680035692.01.T01:intron 20.0%
!!! TCATTTTTTTTTTGTCTCTA+TGG + Chr6:110815691-110815710 MsG0680035692.01.T01:intron 20.0%
! AATGAATTGAAACTCATTGA+AGG - Chr6:110815774-110815793 None:intergenic 25.0%
! AATTGTAATGTTCTTTACCT+TGG - Chr6:110815379-110815398 None:intergenic 25.0%
! ATATGATGTGAAAGAAATCA+AGG + Chr6:110815284-110815303 MsG0680035692.01.T01:CDS 25.0%
! ATCCAAAAAGTTTATCAAAG+AGG + Chr6:110815230-110815249 MsG0680035692.01.T01:CDS 25.0%
! ATGACAGTAAAACTTACAAT+AGG - Chr6:110815675-110815694 None:intergenic 25.0%
! GAAAAATTAAAGCAAGAAGA+AGG + Chr6:110815811-110815830 MsG0680035692.01.T01:CDS 25.0%
! TATCATCACACTGAATAAAT+TGG + Chr6:110816232-110816251 MsG0680035692.01.T01:intron 25.0%
! TATCTTGCATAAAAGAGTTT+AGG + Chr6:110815740-110815759 MsG0680035692.01.T01:intron 25.0%
! TGCTTCTAATAATCTAACAA+GGG - Chr6:110816208-110816227 None:intergenic 25.0%
! TTTAGAAATCCAAAAGCAAA+AGG + Chr6:110815132-110815151 MsG0680035692.01.T01:CDS 25.0%
!! ATTCCATTAGTTTCAATCTT+TGG - Chr6:110816577-110816596 None:intergenic 25.0%
!! GAAGTAGAAAACATGATTTT+AGG + Chr6:110816928-110816947 MsG0680035692.01.T01:CDS 25.0%
!!! ATTGCAAAGGATTTGTTAAA+AGG + Chr6:110814319-110814338 MsG0680035692.01.T01:CDS 25.0%
!!! TTCTGAGACTAAACTTATTT+TGG + Chr6:110816786-110816805 MsG0680035692.01.T01:CDS 25.0%
!!! TTTTGCTTTTGGATTTCTAA+AGG - Chr6:110815133-110815152 None:intergenic 25.0%
AAAATCCGATGATATTGCAA+AGG + Chr6:110814306-110814325 MsG0680035692.01.T01:CDS 30.0%
AATTCATTATTCTTGTGCAC+AGG + Chr6:110815786-110815805 MsG0680035692.01.T01:intron 30.0%
ACAAAAGGTTAACAGTTCAA+AGG + Chr6:110815590-110815609 MsG0680035692.01.T01:CDS 30.0%
ATCCAATACAAGACTCTATT+TGG + Chr6:110816597-110816616 MsG0680035692.01.T01:CDS 30.0%
ATCTGTTATGCAAAAACAGT+CGG + Chr6:110814792-110814811 MsG0680035692.01.T01:CDS 30.0%
ATTGATGCAAATGTGAATGA+TGG + Chr6:110814451-110814470 MsG0680035692.01.T01:CDS 30.0%
CAAATCCTTTGCAATATCAT+CGG - Chr6:110814314-110814333 None:intergenic 30.0%
CTACCAAAGATTGAAACTAA+TGG + Chr6:110816571-110816590 MsG0680035692.01.T01:CDS 30.0%
CTTGAAACTACTCATTTCAA+TGG + Chr6:110814931-110814950 MsG0680035692.01.T01:CDS 30.0%
GAGTTTCTCAATCTTGATAT+TGG + Chr6:110816535-110816554 MsG0680035692.01.T01:CDS 30.0%
GGAACTTAAGAAAGTGATTA+AGG + Chr6:110814546-110814565 MsG0680035692.01.T01:CDS 30.0%
GGATAATATTTGTGCAATGT+TGG + Chr6:110816807-110816826 MsG0680035692.01.T01:CDS 30.0%
GGTTTCAAAAGCTAAAATTG+TGG + Chr6:110815422-110815441 MsG0680035692.01.T01:CDS 30.0%
GTCAAATTCTCACAAAATGA+AGG + Chr6:110814093-110814112 MsG0680035692.01.T01:CDS 30.0%
GTGCTTCTAATAATCTAACA+AGG - Chr6:110816209-110816228 None:intergenic 30.0%
TAAACAAGACAAAGAAGAGA+AGG + Chr6:110814159-110814178 MsG0680035692.01.T01:CDS 30.0%
TCAAGATTGCAAATCTCTTT+GGG + Chr6:110816706-110816725 MsG0680035692.01.T01:CDS 30.0%
TGTTTGGTATGACAAACTTT+CGG + Chr6:110814672-110814691 MsG0680035692.01.T01:CDS 30.0%
TTCAAAAACCTTCAAACCAA+GGG + Chr6:110815161-110815180 MsG0680035692.01.T01:CDS 30.0%
TTCAAGATTGCAAATCTCTT+TGG + Chr6:110816705-110816724 MsG0680035692.01.T01:CDS 30.0%
TTTGAACACAATTCAGCTTA+TGG + Chr6:110814502-110814521 MsG0680035692.01.T01:CDS 30.0%
! ATCCAAATAGAGTCTTGTAT+TGG - Chr6:110816602-110816621 None:intergenic 30.0%
! ATGGTCAATAAATGATTTGC+TGG - Chr6:110816509-110816528 None:intergenic 30.0%
! CATTAGTTTCAATCTTTGGT+AGG - Chr6:110816573-110816592 None:intergenic 30.0%
! CTCCTCTTTGATAAACTTTT+TGG - Chr6:110815235-110815254 None:intergenic 30.0%
! GTAGAAAACATGATTTTAGG+TGG + Chr6:110816931-110816950 MsG0680035692.01.T01:CDS 30.0%
! TTTTCCTTCCTTGAAAAAGT+TGG - Chr6:110814712-110814731 None:intergenic 30.0%
!! AAAGAAGAGAAGGTATCAAA+AGG + Chr6:110814169-110814188 MsG0680035692.01.T01:CDS 30.0%
!! ATAGGTTGATAAATGGAATG+TGG + Chr6:110816851-110816870 MsG0680035692.01.T01:CDS 30.0%
!! TGCAACAATAGGTTGATAAA+TGG + Chr6:110816844-110816863 MsG0680035692.01.T01:CDS 30.0%
!! TTTGAAACCTCCTTTTGTAT+CGG - Chr6:110815411-110815430 None:intergenic 30.0%
!!! GATTTTAGGTGGATTAATTG+AGG + Chr6:110816942-110816961 MsG0680035692.01.T01:CDS 30.0%
AATTGTCACTGGATACACTT+TGG + Chr6:110815962-110815981 MsG0680035692.01.T01:intron 35.0%
ACAGATGGAAATGTTCTTGA+AGG - Chr6:110814778-110814797 None:intergenic 35.0%
ACCTATGCAAATAAGACTAG+AGG + Chr6:110815928-110815947 MsG0680035692.01.T01:CDS 35.0%
AGAAAGAGAGAAGACACTAA+GGG + Chr6:110814903-110814922 MsG0680035692.01.T01:CDS 35.0%
AGATGGAAATGTTCTTGAAG+GGG - Chr6:110814776-110814795 None:intergenic 35.0%
ATAAATGGAATGTGGAACTG+TGG + Chr6:110816859-110816878 MsG0680035692.01.T01:CDS 35.0%
CAACATGAGAAAAGAGATGA+TGG + Chr6:110815197-110815216 MsG0680035692.01.T01:CDS 35.0%
CAAGAAGAAGGAATGAGTTT+CGG + Chr6:110815823-110815842 MsG0680035692.01.T01:CDS 35.0%
CAAGAAGCTTCGAATAGTAT+GGG + Chr6:110814385-110814404 MsG0680035692.01.T01:CDS 35.0%
CAAGTCAATCTTCTGTTGTT+TGG + Chr6:110814656-110814675 MsG0680035692.01.T01:CDS 35.0%
CACAAAACCAAAGACACAAA+AGG + Chr6:110815575-110815594 MsG0680035692.01.T01:CDS 35.0%
CAGATGGAAATGTTCTTGAA+GGG - Chr6:110814777-110814796 None:intergenic 35.0%
CATCATCAACTGAAGAATTC+TGG - Chr6:110816306-110816325 None:intergenic 35.0%
CCTACACAAGTTAGCAATAA+GGG - Chr6:110816682-110816701 None:intergenic 35.0%
CTACACAAGTTAGCAATAAG+GGG - Chr6:110816681-110816700 None:intergenic 35.0%
CTTCAAAAACCTTCAAACCA+AGG + Chr6:110815160-110815179 MsG0680035692.01.T01:CDS 35.0%
GAAAGTGATTAAGGAGAGTT+TGG + Chr6:110814555-110814574 MsG0680035692.01.T01:CDS 35.0%
GAACTATGCTTTCTTACCTT+CGG - Chr6:110814868-110814887 None:intergenic 35.0%
GAGATATGAAGTGCAACAAT+AGG + Chr6:110816833-110816852 MsG0680035692.01.T01:CDS 35.0%
GATGAAATGCTCTTTCTAGA+TGG - Chr6:110815537-110815556 None:intergenic 35.0%
TCAATCTTTGGTAGGATCTT+AGG - Chr6:110816565-110816584 None:intergenic 35.0%
TCTCAGAAAACCGATACAAA+AGG + Chr6:110815398-110815417 MsG0680035692.01.T01:CDS 35.0%
! AAAGTACCAATCTTGTTGCA+AGG + Chr6:110814731-110814750 MsG0680035692.01.T01:CDS 35.0%
! AATCTTGTTGCAAGGTTGAT+GGG + Chr6:110814739-110814758 MsG0680035692.01.T01:CDS 35.0%
! CATCATCTCTTTTCTCATGT+TGG - Chr6:110815199-110815218 None:intergenic 35.0%
! CCTTATTGCTAACTTGTGTA+GGG + Chr6:110816680-110816699 MsG0680035692.01.T01:CDS 35.0%
! CTGTTAACCTTTTGTGTCTT+TGG - Chr6:110815585-110815604 None:intergenic 35.0%
! TAATCTAACAAGGGCATGTT+TGG - Chr6:110816199-110816218 None:intergenic 35.0%
! TTTGTCTCTAAATTTTCGGC+CGG - Chr6:110814139-110814158 None:intergenic 35.0%
!! AACAGTTGATGAAAAAGCCA+AGG + Chr6:110815359-110815378 MsG0680035692.01.T01:CDS 35.0%
!! ACCTCTAGTCTTATTTGCAT+AGG - Chr6:110815932-110815951 None:intergenic 35.0%
!! ATTGACTTGAGCTTGTAGAA+GGG - Chr6:110814645-110814664 None:intergenic 35.0%
!! CTTGGTTTGAAGGTTTTTGA+AGG - Chr6:110815162-110815181 None:intergenic 35.0%
!!! CATGTTCACCAACTTTTTCA+AGG + Chr6:110814701-110814720 MsG0680035692.01.T01:CDS 35.0%
!!! GACTGTTTTTGCATAACAGA+TGG - Chr6:110814793-110814812 None:intergenic 35.0%
!!! TTCACCAACTTTTTCAAGGA+AGG + Chr6:110814705-110814724 MsG0680035692.01.T01:CDS 35.0%
!!! TTGTGTCTTTGGTTTTGTGA+TGG - Chr6:110815574-110815593 None:intergenic 35.0%
AAAACCTTCAAACCAAGGGA+AGG + Chr6:110815165-110815184 MsG0680035692.01.T01:CDS 40.0%
AAATGATACCATCCTTGCTG+AGG + Chr6:110816351-110816370 MsG0680035692.01.T01:CDS 40.0%
ACAATAGGTTTAGCTGCTTC+AGG - Chr6:110815660-110815679 None:intergenic 40.0%
AGTAACAGAAGATCTCATCG+TGG + Chr6:110815891-110815910 MsG0680035692.01.T01:CDS 40.0%
CAATCTTGTTGCAAGGTTGA+TGG + Chr6:110814738-110814757 MsG0680035692.01.T01:CDS 40.0%
CAGAAAACCGATACAAAAGG+AGG + Chr6:110815401-110815420 MsG0680035692.01.T01:CDS 40.0%
CAGAAAGAGAGAAGACACTA+AGG + Chr6:110814902-110814921 MsG0680035692.01.T01:CDS 40.0%
CATCAACCTTGCAACAAGAT+TGG - Chr6:110814740-110814759 None:intergenic 40.0%
CCCTACACAAGTTAGCAATA+AGG - Chr6:110816683-110816702 None:intergenic 40.0%
CCTCGCAATTATCTGCAAAA+GGG - Chr6:110816279-110816298 None:intergenic 40.0%
CGAGGTTTCATGAGTACAAT+CGG - Chr6:110815051-110815070 None:intergenic 40.0%
CGATTGTACTCATGAAACCT+CGG + Chr6:110815049-110815068 MsG0680035692.01.T01:CDS 40.0%
CTAAAGGAAAACTCTTCTCG+AGG - Chr6:110815117-110815136 None:intergenic 40.0%
CTAACTGTGATGACTCTTGA+AGG - Chr6:110816654-110816673 None:intergenic 40.0%
CTCTTCAAGTAGTTGTAGAG+AGG + Chr6:110814525-110814544 MsG0680035692.01.T01:CDS 40.0%
CTTAGTGTCTTCTCTCTTTC+TGG - Chr6:110814904-110814923 None:intergenic 40.0%
GATTGAGAAACTCATCTGCA+TGG - Chr6:110816528-110816547 None:intergenic 40.0%
GCAAGAAGCTTCGAATAGTA+TGG + Chr6:110814384-110814403 MsG0680035692.01.T01:CDS 40.0%
GGATCATCACATGTCACAAA+TGG - Chr6:110814034-110814053 None:intergenic 40.0%
GTCGATGAGCATCTCATAAA+CGG + Chr6:110816130-110816149 MsG0680035692.01.T01:intron 40.0%
GTGACATGTGATGATCCAAA+AGG + Chr6:110814037-110814056 MsG0680035692.01.T01:CDS 40.0%
TCCTCGCAATTATCTGCAAA+AGG - Chr6:110816280-110816299 None:intergenic 40.0%
TCGATTGAAGAGAAGACAAG+AGG + Chr6:110814408-110814427 MsG0680035692.01.T01:CDS 40.0%
TGAACAACATGATTGAGTCG+TGG + Chr6:110814260-110814279 MsG0680035692.01.T01:CDS 40.0%
TTTGCAGATAATTGCGAGGA+GGG + Chr6:110816280-110816299 MsG0680035692.01.T01:intron 40.0%
! CCCTTATTGCTAACTTGTGT+AGG + Chr6:110816679-110816698 MsG0680035692.01.T01:CDS 40.0%
! GAAGGAACTCCTTTTGCTTT+TGG - Chr6:110815144-110815163 None:intergenic 40.0%
! GCAAATCTCTTTGGGAAGTT+TGG + Chr6:110816714-110816733 MsG0680035692.01.T01:CDS 40.0%
! TTTTGCAGATAATTGCGAGG+AGG + Chr6:110816279-110816298 MsG0680035692.01.T01:intron 40.0%
!! GATTGACTTGAGCTTGTAGA+AGG - Chr6:110814646-110814665 None:intergenic 40.0%
ATCTTCTTTGCAGCTTGTGG+AGG + Chr6:110814216-110814235 MsG0680035692.01.T01:CDS 45.0%
ATGATTGAGTCGTGGTCTAG+AGG + Chr6:110814268-110814287 MsG0680035692.01.T01:CDS 45.0%
ATGGAATGTGGAACTGTGGT+TGG + Chr6:110816863-110816882 MsG0680035692.01.T01:CDS 45.0%
ATTGCTGACACCGTCTGTAT+CGG + Chr6:110816427-110816446 MsG0680035692.01.T01:CDS 45.0%
CAAAGCACAAGCACTTCTGA+AGG + Chr6:110814595-110814614 MsG0680035692.01.T01:CDS 45.0%
CAAGGCTGTTGAAAGCAAGA+AGG + Chr6:110815302-110815321 MsG0680035692.01.T01:CDS 45.0%
CCAAAAGGAGTTGTTGAGTG+TGG + Chr6:110814052-110814071 MsG0680035692.01.T01:CDS 45.0%
CTCAAGATCAAGGCGAAATC+AGG + Chr6:110815451-110815470 MsG0680035692.01.T01:CDS 45.0%
GAAAACTCTTCTCGAGGAAC+CGG - Chr6:110815111-110815130 None:intergenic 45.0%
GAAACAAGTTTCACTGACGC+TGG - Chr6:110816392-110816411 None:intergenic 45.0%
GGTTTCATGAGTACAATCGG+TGG - Chr6:110815048-110815067 None:intergenic 45.0%
GTGGAAGTCTGAGGAGATAT+AGG + Chr6:110814071-110814090 MsG0680035692.01.T01:CDS 45.0%
GTGGCAAAAGCTCAAGATCA+AGG + Chr6:110815441-110815460 MsG0680035692.01.T01:CDS 45.0%
TCCACAAGCTGCAAAGAAGA+TGG - Chr6:110814217-110814236 None:intergenic 45.0%
TCCATCTTCTTTGCAGCTTG+TGG + Chr6:110814213-110814232 MsG0680035692.01.T01:CDS 45.0%
TTGTTGAGTGTGGAAGTCTG+AGG + Chr6:110814062-110814081 MsG0680035692.01.T01:CDS 45.0%
! ATCGGTTTCACCGATACAGA+CGG - Chr6:110816440-110816459 None:intergenic 45.0%
! CACAAGCACTTCTGAAGGAT+TGG + Chr6:110814600-110814619 MsG0680035692.01.T01:CDS 45.0%
! CCACACTCAACAACTCCTTT+TGG - Chr6:110814055-110814074 None:intergenic 45.0%
! CCCTTTTGCAGATAATTGCG+AGG + Chr6:110816276-110816295 MsG0680035692.01.T01:intron 45.0%
! GTAGTCCTATTAGAGAGCAC+AGG + Chr6:110814965-110814984 MsG0680035692.01.T01:CDS 45.0%
! GTCTCTAGAGATGCTTCGTA+AGG + Chr6:110814360-110814379 MsG0680035692.01.T01:CDS 45.0%
! GTCTTTGTCTGGCTCGAAAT+CGG - Chr6:110816458-110816477 None:intergenic 45.0%
! TGAACCTTCCCTTGGTTTGA+AGG - Chr6:110815172-110815191 None:intergenic 45.0%
! TTGGTAGTTGAACCTTCCCT+TGG - Chr6:110815180-110815199 None:intergenic 45.0%
!! AGCTCAGAAGTGTCTTTGTC+TGG - Chr6:110816469-110816488 None:intergenic 45.0%
!! CTAAATTTTCGGCCGGCTTT+CGG - Chr6:110814132-110814151 None:intergenic 45.0%
!! CTTCAGAAGTGCTTGTGCTT+TGG - Chr6:110814597-110814616 None:intergenic 45.0%
!! TAAGACAAAGTGCCGAAAGC+CGG + Chr6:110814117-110814136 MsG0680035692.01.T01:CDS 45.0%
ACAAGTTTCACTGACGCTGG+TGG - Chr6:110816389-110816408 None:intergenic 50.0%
CGAAGCCTGTGCTCTCTAAT+AGG - Chr6:110814973-110814992 None:intergenic 50.0%
GAATGTGGAACTGTGGTTGG+AGG + Chr6:110816866-110816885 MsG0680035692.01.T01:CDS 50.0%
GGATACACTTTGGCCCTGTT+TGG + Chr6:110815972-110815991 MsG0680035692.01.T01:intron 50.0%
GGTGTGTCAATCTCGAACAC+AGG - Chr6:110814847-110814866 None:intergenic 50.0%
GTTCGAGATTGACACACCGA+AGG + Chr6:110814849-110814868 MsG0680035692.01.T01:CDS 50.0%
GTTCGTAGAAACGTACGAGC+CGG + Chr6:110815089-110815108 MsG0680035692.01.T01:CDS 50.0%
TCAATCCTCGACACACTTCG+CGG - Chr6:110815501-110815520 None:intergenic 50.0%
! GAAGCGCGTCAACGAGTTTT+TGG + Chr6:110815260-110815279 MsG0680035692.01.T01:CDS 50.0%
! TCTAGAGGTGTGAGGTACGA+TGG + Chr6:110814283-110814302 MsG0680035692.01.T01:CDS 50.0%
ACGAGCTTCCTCAGCAAGGA+TGG - Chr6:110816362-110816381 None:intergenic 55.0%
CAGCTTGTGGAGGTCTCTAG+AGG + Chr6:110814226-110814245 MsG0680035692.01.T01:CDS 55.0%
TGGAACTGTGGTTGGAGGCA+TGG + Chr6:110816871-110816890 MsG0680035692.01.T01:CDS 55.0%
TGTCACGAGCTTCCTCAGCA+AGG - Chr6:110816366-110816385 None:intergenic 55.0%
! AGTCGTGGTCTAGAGGTGTG+AGG + Chr6:110814275-110814294 MsG0680035692.01.T01:CDS 55.0%
GAAAGCCGCGAAGTGTGTCG+AGG + Chr6:110815493-110815512 MsG0680035692.01.T01:CDS 60.0%
ACCTCGGCGCGCTTCGTATC+AGG + Chr6:110815065-110815084 MsG0680035692.01.T01:CDS 65.0%
TCCTGATACGAAGCGCGCCG+AGG - Chr6:110815069-110815088 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110814022 110816984 110814022 ID=MsG0680035692.01;Name=MsG0680035692.01
Chr6 mRNA 110814022 110816984 110814022 ID=MsG0680035692.01.T01;Parent=MsG0680035692.01;Name=MsG0680035692.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|3|0|831
Chr6 exon 110814022 110815677 110814022 ID=MsG0680035692.01.T01:exon:8945;Parent=MsG0680035692.01.T01
Chr6 exon 110815808 110815949 110815808 ID=MsG0680035692.01.T01:exon:8946;Parent=MsG0680035692.01.T01
Chr6 exon 110816287 110816984 110816287 ID=MsG0680035692.01.T01:exon:8947;Parent=MsG0680035692.01.T01
Chr6 CDS 110814022 110815677 110814022 ID=MsG0680035692.01.T01:cds;Parent=MsG0680035692.01.T01
Chr6 CDS 110815808 110815949 110815808 ID=MsG0680035692.01.T01:cds;Parent=MsG0680035692.01.T01
Chr6 CDS 110816287 110816984 110816287 ID=MsG0680035692.01.T01:cds;Parent=MsG0680035692.01.T01
Gene Sequence

>MsG0680035692.01.T01

ATGTATAAACCATTTGTGACATGTGATGATCCAAAAGGAGTTGTTGAGTGTGGAAGTCTGAGGAGATATAGGTCAAATTCTCACAAAATGAAGGATAAGACAAAGTGCCGAAAGCCGGCCGAAAATTTAGAGACAAATAAACAAGACAAAGAAGAGAAGGTATCAAAAGGTTCAACAGAAAGAGATTTTGATCCATCTTCTTTGCAGCTTGTGGAGGTCTCTAGAGGTGCTGCAAAGTTGAACAACATGATTGAGTCGTGGTCTAGAGGTGTGAGGTACGATGGAAAATCCGATGATATTGCAAAGGATTTGTTAAAAGGCGCTCTTGATTTGCAAGAGTCTCTAGAGATGCTTCGTAAGGTGCAAGAAGCTTCGAATAGTATGGGTCGATTGAAGAGAAGACAAGAGGAGAAACATGAAAGAAGTAAAATTGATGCAAATGTGAATGATGGAAATAGATCAACACATTCTAATCAATTTTTTGAACACAATTCAGCTTATGGCTCTTCAAGTAGTTGTAGAGAGGAACTTAAGAAAGTGATTAAGGAGAGTTTGGTTCGACAAAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCAGCATTCCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCGGATTCTTCATGTTCACCAACTTTTTCAAGGAAGGAAAAAAGTACCAATCTTGTTGCAAGGTTGATGGGATTAGAACAATCCCCTTCAAGAACATTTCCATCTGTTATGCAAAAACAGTCGGAGAATCAAAAGATTGTGAATCAGAAGAGACCTGTGTTCGAGATTGACACACCGAAGGTAAGAAAGCATAGTTCAATATTTGAGAATCCAGAAAGAGAGAAGACACTAAGGGAAATTCTTGAAACTACTCATTTCAATGGATTGTTAAAGAGTAGTCCTATTAGAGAGCACAGGCTTCGTAATCATGTCAATCATTCAAATGATCTTCATTATGAACAGTTTGATGATTTACCACCGATTGTACTCATGAAACCTCGGCGCGCTTCGTATCAGGAGTTCGTAGAAACGTACGAGCCGGTTCCTCGAGAAGAGTTTTCCTTTAGAAATCCAAAAGCAAAAGGAGTTCCTTCAAAAACCTTCAAACCAAGGGAAGGTTCAACTACCAACATGAGAAAAGAGATGATGGAAGAAAATCTATCCAAAAAGTTTATCAAAGAGGAGAGATCGAAGCGCGTCAACGAGTTTTTGGAATATGATGTGAAAGAAATCAAGGCTGTTGAAAGCAAGAAGGTTCAAAAAGCTAGTCATAGATCACAAGCAAGTGAAACAGTTGATGAAAAAGCCAAGGTAAAGAACATTACAATTCTCAGAAAACCGATACAAAAGGAGGTTTCAAAAGCTAAAATTGTGGCAAAAGCTCAAGATCAAGGCGAAATCAGGTCTAGTAGTGAAAAGTTGAGAAAGCCGCGAAGTGTGTCGAGGATTGAGAAGAATGAGATTCCATCTAGAAAGAGCATTTCATCAAATTCAAATACTACCATCACAAAACCAAAGACACAAAAGGTTAACAGTTCAAAGGAATTGAGAAAGAGTCAGATGAAGAAGCAAATATCTGTTGATTTGCCTGAAGCAGCTAAACCTATTGATGAAAAATTAAAGCAAGAAGAAGGAATGAGTTTCGGTGTTTCTTGTAAAGATGATTGTGCTGAGATTAAAATAATCACTACAGTAACAGAAGATCTCATCGTGGAAGATGAAGTAGACACCTATGCAAATAAGACTAGAGATAATTGCGAGGAGGGCCAGAATTCTTCAGTTGATGATGTTTTGATGTTAAATTGTGAGCATGAAAATGATACCATCCTTGCTGAGGAAGCTCGTGACACCACCAGCGTCAGTGAAACTTGTTTCAATCAAGACAAAGACATTGCTGACACCGTCTGTATCGGTGAAACCGATTTCGAGCCAGACAAAGACACTTCTGAGCTGAAATATTTGCTTCTAACCAGCAAATCATTTATTGACCATGCAGATGAGTTTCTCAATCTTGATATTGGTTATCCTAAGATCCTACCAAAGATTGAAACTAATGGAATATCCAATACAAGACTCTATTTGGATTGCGCGAACGAACTCGCTGAGAGAAAAAGCCTTCAAGAGTCATCACAGTTAGTTCACCCCTTATTGCTAACTTGTGTAGGGAATTCAAGATTGCAAATCTCTTTGGGAAGTTTGGTTGAAGAAATCAACAATGCAATTGACAGTCTTACATCTTACAGTGAAAATTCTGAGACTAAACTTATTTTGGATAATATTTGTGCAATGTTGGAGAGAGATATGAAGTGCAACAATAGGTTGATAAATGGAATGTGGAACTGTGGTTGGAGGCATGGATTTTCTTGTGATGAAGCTGAACAAGCTGTTAATGAAGTAGAAAACATGATTTTAGGTGGATTAATTGAGGAGATTATTGTAAATTTATGA

Protein sequence

>MsG0680035692.01.T01

MYKPFVTCDDPKGVVECGSLRRYRSNSHKMKDKTKCRKPAENLETNKQDKEEKVSKGSTERDFDPSSLQLVEVSRGAAKLNNMIESWSRGVRYDGKSDDIAKDLLKGALDLQESLEMLRKVQEASNSMGRLKRRQEEKHERSKIDANVNDGNRSTHSNQFFEHNSAYGSSSSCREELKKVIKESLVRQNLFQSTSTSEGLDSASAAFPSTSSSQSSVVWYDKLSDSSCSPTFSRKEKSTNLVARLMGLEQSPSRTFPSVMQKQSENQKIVNQKRPVFEIDTPKVRKHSSIFENPEREKTLREILETTHFNGLLKSSPIREHRLRNHVNHSNDLHYEQFDDLPPIVLMKPRRASYQEFVETYEPVPREEFSFRNPKAKGVPSKTFKPREGSTTNMRKEMMEENLSKKFIKEERSKRVNEFLEYDVKEIKAVESKKVQKASHRSQASETVDEKAKVKNITILRKPIQKEVSKAKIVAKAQDQGEIRSSSEKLRKPRSVSRIEKNEIPSRKSISSNSNTTITKPKTQKVNSSKELRKSQMKKQISVDLPEAAKPIDEKLKQEEGMSFGVSCKDDCAEIKIITTVTEDLIVEDEVDTYANKTRDNCEEGQNSSVDDVLMLNCEHENDTILAEEARDTTSVSETCFNQDKDIADTVCIGETDFEPDKDTSELKYLLLTSKSFIDHADEFLNLDIGYPKILPKIETNGISNTRLYLDCANELAERKSLQESSQLVHPLLLTCVGNSRLQISLGSLVEEINNAIDSLTSYSENSETKLILDNICAMLERDMKCNNRLINGMWNCGWRHGFSCDEAEQAVNEVENMILGGLIEEIIVNL*