AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018644.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018644.01.T01 MTR_4g015860 92.857 224 7 1 1 215 1 224 4.62e-155 429
MsG0480018644.01.T01 MTR_3g075540 39.130 161 96 2 43 203 80 238 5.35e-30 112
MsG0480018644.01.T01 MTR_7g092820 35.333 150 95 2 49 198 47 194 4.37e-25 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018644.01.T01 AT3G08920 59.777 179 68 1 24 202 24 198 1.73e-78 234
MsG0480018644.01.T01 AT4G24750 42.236 161 91 2 43 203 82 240 5.85e-34 123
MsG0480018644.01.T01 AT2G42220 32.335 167 111 2 32 198 32 196 2.54e-25 99.4

Find 61 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGAAATGGGTTCATTT+TGG 0.181555 4:+7980975 MsG0480018644.01.T01:CDS
GTGAGTAAACACTCCAAAAT+TGG 0.182234 4:+7983043 MsG0480018644.01.T01:three_prime_UTR
TGTTTATAGTTAGTTCTTAA+TGG 0.219190 4:+7980609 MsG0480018644.01.T01:five_prime_UTR
TGCCTTCTCTCTTTCCCAAT+TGG 0.249345 4:-7980886 None:intergenic
TTGTCTAGCACTCATATTAT+TGG 0.250558 4:-7980772 None:intergenic
TACTAATATATTCGAGTAAA+TGG 0.273804 4:-7982870 None:intergenic
AATCGATGACATGTTTGATT+TGG 0.280561 4:+7982762 MsG0480018644.01.T01:three_prime_UTR
TGATTTATTTAGAGACTATA+AGG 0.283943 4:+7982817 MsG0480018644.01.T01:three_prime_UTR
CATTTCTTAAGCAAAGTTAA+AGG 0.288252 4:-7980963 None:intergenic
ATAACTGTTGAAGCATCTTT+TGG 0.292122 4:-7980828 None:intergenic
CTTTAACTTTGCTTAAGAAA+TGG 0.296949 4:+7980964 MsG0480018644.01.T01:CDS
GCCTTCTCTCTTTCCCAATT+GGG 0.299652 4:-7980885 None:intergenic
AAGAACCTTGGTATCTTTAC+CGG 0.329752 4:-7981075 None:intergenic
TGGCATGTGGAGAAGGATTA+AGG 0.339086 4:+7981099 MsG0480018644.01.T01:CDS
TAGAAGCTTACACGTTCAAT+AGG 0.344486 4:-7982931 None:intergenic
GCAACTTCAAAGCTGTATAA+TGG 0.365682 4:+7982450 MsG0480018644.01.T01:CDS
TTTAACTTTGCTTAAGAAAT+GGG 0.367978 4:+7980965 MsG0480018644.01.T01:CDS
CACGTTCAAAGTCCCAATTT+TGG 0.370665 4:-7983056 None:intergenic
CTAACTATAAACATTGGCTT+TGG 0.385556 4:-7980599 None:intergenic
TATTCGAGTAAATGGTCATT+TGG 0.387516 4:-7982862 None:intergenic
ATGTCATCGATTAGTTTGTT+TGG 0.394233 4:-7982751 None:intergenic
TTTGCATGTGCCAATGTTTG+TGG 0.398101 4:+7980923 MsG0480018644.01.T01:CDS
GTTGCCATATTGTGATGTTA+TGG 0.405469 4:-7980654 None:intergenic
TAACTATAAACATTGGCTTT+GGG 0.406076 4:-7980598 None:intergenic
TCTTGATGTTAGACCCAATT+GGG 0.414437 4:+7980872 MsG0480018644.01.T01:CDS
AATGGAGGTTACAGAAATCT+TGG 0.420169 4:+7982468 MsG0480018644.01.T01:CDS
GGTTATATTGGTGCTTGGAC+TGG 0.434850 4:+7980996 MsG0480018644.01.T01:CDS
CAAGTGGAAAATGTTGTTCC+CGG 0.438622 4:+7981056 MsG0480018644.01.T01:CDS
ATATCCATAACATCACAATA+TGG 0.443614 4:+7980650 MsG0480018644.01.T01:exon
TTCTTGATGTTAGACCCAAT+TGG 0.445913 4:+7980871 MsG0480018644.01.T01:CDS
CTCTGAGTTTCTTAGTCAAG+TGG 0.449525 4:+7981040 MsG0480018644.01.T01:CDS
TGAGTAAACACTCCAAAATT+GGG 0.461254 4:+7983044 MsG0480018644.01.T01:three_prime_UTR
GCTAGACAACTCATAGAATC+TGG 0.477325 4:+7980786 MsG0480018644.01.T01:CDS
AAGTTGAAGTATGCTACAAT+TGG 0.491595 4:+7982555 MsG0480018644.01.T01:CDS
GTTCTTGTGGCATGTGGAGA+AGG 0.499010 4:+7981092 MsG0480018644.01.T01:CDS
AGAAGCTTACACGTTCAATA+GGG 0.501829 4:-7982930 None:intergenic
TCCTTATCTTCCACAAACAT+TGG 0.502436 4:-7980933 None:intergenic
CACTTCTGTAAGAATCTGAC+AGG 0.514749 4:-7983023 None:intergenic
TTGAAGTATGCTACAATTGG+AGG 0.518473 4:+7982558 MsG0480018644.01.T01:CDS
GATGATTTCTCAGACGTTGA+AGG 0.525175 4:+7982525 MsG0480018644.01.T01:CDS
AGAAATCTTGGATGGTTAGT+CGG 0.534565 4:+7982480 MsG0480018644.01.T01:CDS
CAACTGAAGGAAGTAGTAAG+AGG 0.536910 4:-7982583 None:intergenic
TTTGTGGAAGATAAGGATAA+TGG 0.538416 4:+7980939 MsG0480018644.01.T01:CDS
TCAACAGTTATGAACTCAGA+AGG 0.546363 4:+7980840 MsG0480018644.01.T01:CDS
AGGAGACGCTGACATATTCA+AGG 0.546941 4:+7982837 MsG0480018644.01.T01:three_prime_UTR
CAATTAATGCGCTTGCAACA+AGG 0.562003 4:-7982957 None:intergenic
ACCAAGGTTCTTGTGGCATG+TGG 0.563369 4:+7981086 MsG0480018644.01.T01:CDS
TAAGAACTAACTATAAACAT+TGG 0.565441 4:-7980605 None:intergenic
TCCACATGCCACAAGAACCT+TGG 0.571858 4:-7981087 None:intergenic
GCCAATGTTTGTGGAAGATA+AGG 0.571971 4:+7980932 MsG0480018644.01.T01:CDS
TAAAGATACCAAGGTTCTTG+TGG 0.574163 4:+7981079 MsG0480018644.01.T01:CDS
AGAACCTTGGTATCTTTACC+GGG 0.588614 4:-7981074 None:intergenic
GAATGTGTCTCCATATCGAT+CGG 0.590162 4:-7982723 None:intergenic
GAGGTTACAGAAATCTTGGA+TGG 0.591764 4:+7982472 MsG0480018644.01.T01:CDS
AGAGAGAAGGCACATGTGAA+AGG 0.600594 4:+7980897 MsG0480018644.01.T01:CDS
TCGGTCCAGAAAACACACTT+AGG 0.603862 4:-7982704 None:intergenic
ACCCAATTGGGAAAGAGAGA+AGG 0.609153 4:+7980884 MsG0480018644.01.T01:CDS
GTAGAACTATGAGCAACTGA+AGG 0.616951 4:-7982596 None:intergenic
ACTTCAAAGCTGTATAATGG+AGG 0.653802 4:+7982453 MsG0480018644.01.T01:CDS
AATCTTGGATGGTTAGTCGG+AGG 0.654934 4:+7982483 MsG0480018644.01.T01:CDS
TGTTCCCGGTAAAGATACCA+AGG 0.686786 4:+7981070 MsG0480018644.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATAATTATTTAGTT+AGG + Chr4:7981159-7981178 MsG0480018644.01.T01:intron 10.0%
!!! AATGATTTTATATTGTAAAT+TGG - Chr4:7982343-7982362 None:intergenic 10.0%
!!! ATGATTTTATATTGTAAATT+GGG - Chr4:7982342-7982361 None:intergenic 10.0%
!!! TTTTTATAATCATATACTAT+AGG - Chr4:7981975-7981994 None:intergenic 10.0%
!! ATAAAAAAGACAATTGAAAT+AGG + Chr4:7981988-7982007 MsG0480018644.01.T01:intron 15.0%
!! ATATTTCATAAATTGTAAGA+TGG - Chr4:7982100-7982119 None:intergenic 15.0%
!! TAAAATCATTATTAGCATAT+AGG + Chr4:7982353-7982372 MsG0480018644.01.T01:intron 15.0%
!!! AACGATTTTATACAATATTA+AGG + Chr4:7981626-7981645 MsG0480018644.01.T01:intron 15.0%
!! ATAGGACAAGTTTATTATTA+TGG + Chr4:7982371-7982390 MsG0480018644.01.T01:intron 20.0%
!! TAAGAACTAACTATAAACAT+TGG - Chr4:7980608-7980627 None:intergenic 20.0%
!! TACTAATATATTCGAGTAAA+TGG - Chr4:7982873-7982892 None:intergenic 20.0%
!! TGATTTATTTAGAGACTATA+AGG + Chr4:7982817-7982836 MsG0480018644.01.T01:three_prime_UTR 20.0%
!!! AAAACTACGTTTTAAGTTTT+TGG + Chr4:7981711-7981730 MsG0480018644.01.T01:intron 20.0%
!!! TGAATTTTGAGAAAATTAAG+TGG + Chr4:7981279-7981298 MsG0480018644.01.T01:intron 20.0%
!!! TGTTTATAGTTAGTTCTTAA+TGG + Chr4:7980609-7980628 MsG0480018644.01.T01:five_prime_UTR 20.0%
!!! TTCTCTTCAAAAAAAGTTTT+TGG + Chr4:7981740-7981759 MsG0480018644.01.T01:intron 20.0%
!!! TTTAACTTTGCTTAAGAAAT+GGG + Chr4:7980965-7980984 MsG0480018644.01.T01:CDS 20.0%
!!! TTTAATTGAAGTAGGTTTTT+TGG + Chr4:7981767-7981786 MsG0480018644.01.T01:intron 20.0%
! AACTTGAAACATAGATTATG+TGG + Chr4:7981227-7981246 MsG0480018644.01.T01:intron 25.0%
! ACACATAAACAAATACACAT+AGG - Chr4:7981191-7981210 None:intergenic 25.0%
! ATATCCATAACATCACAATA+TGG + Chr4:7980650-7980669 MsG0480018644.01.T01:exon 25.0%
! ATTGTATAAAATCGTTGTCA+TGG - Chr4:7981622-7981641 None:intergenic 25.0%
! CAATGAAGCAAAATATTGAT+TGG + Chr4:7982394-7982413 MsG0480018644.01.T01:intron 25.0%
! CATTTCTTAAGCAAAGTTAA+AGG - Chr4:7980966-7980985 None:intergenic 25.0%
! TAATTACAAAGGAAGTGAAT+TGG - Chr4:7982152-7982171 None:intergenic 25.0%
!! CTTTAACTTTGCTTAAGAAA+TGG + Chr4:7980964-7980983 MsG0480018644.01.T01:CDS 25.0%
!! GTTAGTATAGCAAGTTTTTA+TGG + Chr4:7981498-7981517 MsG0480018644.01.T01:intron 25.0%
!!! AAGTCCAATTTTGATATTTC+TGG + Chr4:7981449-7981468 MsG0480018644.01.T01:intron 25.0%
!!! AGTCCAATTTTGATATTTCT+GGG + Chr4:7981450-7981469 MsG0480018644.01.T01:intron 25.0%
!!! CAAAATATTGATTGGTTTCT+TGG + Chr4:7982402-7982421 MsG0480018644.01.T01:intron 25.0%
!!! TAAACCTTTGTTTTACACAA+GGG - Chr4:7982203-7982222 None:intergenic 25.0%
!!! TAACTATAAACATTGGCTTT+GGG - Chr4:7980601-7980620 None:intergenic 25.0%
AACAATGACTAATCGTTGTT+TGG - Chr4:7981934-7981953 None:intergenic 30.0%
AAGTTGAAGTATGCTACAAT+TGG + Chr4:7982555-7982574 MsG0480018644.01.T01:CDS 30.0%
AATCAGCCTGTTAATTACAA+AGG - Chr4:7982163-7982182 None:intergenic 30.0%
AATCGATGACATGTTTGATT+TGG + Chr4:7982762-7982781 MsG0480018644.01.T01:three_prime_UTR 30.0%
AGTCATTGTCAAAGACTAAA+TGG - Chr4:7981426-7981445 None:intergenic 30.0%
CAAACAAAAAATCATCCACA+TGG - Chr4:7981128-7981147 None:intergenic 30.0%
TAAACAAGTGATCAAGAGTT+TGG + Chr4:7981833-7981852 MsG0480018644.01.T01:intron 30.0%
TATTCGAGTAAATGGTCATT+TGG - Chr4:7982865-7982884 None:intergenic 30.0%
TCACTTCCTTTGTAATTAAC+AGG + Chr4:7982154-7982173 MsG0480018644.01.T01:intron 30.0%
TCTCCCAGAAATATCAAAAT+TGG - Chr4:7981456-7981475 None:intergenic 30.0%
TGAGTAAACACTCCAAAATT+GGG + Chr4:7983044-7983063 MsG0480018644.01.T01:three_prime_UTR 30.0%
TTGGTGCATTTAATTGAAGT+AGG + Chr4:7981759-7981778 MsG0480018644.01.T01:intron 30.0%
TTGTCTAGCACTCATATTAT+TGG - Chr4:7980775-7980794 None:intergenic 30.0%
TTTGTGGAAGATAAGGATAA+TGG + Chr4:7980939-7980958 MsG0480018644.01.T01:CDS 30.0%
!! ATAACTGTTGAAGCATCTTT+TGG - Chr4:7980831-7980850 None:intergenic 30.0%
!! ATGTCATCGATTAGTTTGTT+TGG - Chr4:7982754-7982773 None:intergenic 30.0%
!! CAATTGAAATAGGTTGCTTT+TGG + Chr4:7981998-7982017 MsG0480018644.01.T01:intron 30.0%
!! CTAACTATAAACATTGGCTT+TGG - Chr4:7980602-7980621 None:intergenic 30.0%
!! CTTAAGAAATGGGTTCATTT+TGG + Chr4:7980975-7980994 MsG0480018644.01.T01:CDS 30.0%
!! GTAAAGGCTGTTGATTTATT+TGG + Chr4:7982059-7982078 MsG0480018644.01.T01:intron 30.0%
!!! AAATAGGTTGCTTTTGGTTT+TGG + Chr4:7982004-7982023 MsG0480018644.01.T01:intron 30.0%
!!! ATTTTGGTTATATTGGTGCT+TGG + Chr4:7980991-7981010 MsG0480018644.01.T01:CDS 30.0%
!!! GTAAACCTTTGTTTTACACA+AGG - Chr4:7982204-7982223 None:intergenic 30.0%
!!! TGGGTTCATTTTGGTTATAT+TGG + Chr4:7980984-7981003 MsG0480018644.01.T01:CDS 30.0%
!!! TTTTGATATTTCTGGGAGAA+CGG + Chr4:7981457-7981476 MsG0480018644.01.T01:intron 30.0%
AACACACAATTTCTTAAGCC+AGG + Chr4:7982030-7982049 MsG0480018644.01.T01:intron 35.0%
AAGAACCTTGGTATCTTTAC+CGG - Chr4:7981078-7981097 None:intergenic 35.0%
AATGGAGGTTACAGAAATCT+TGG + Chr4:7982468-7982487 MsG0480018644.01.T01:CDS 35.0%
AATTTCTTAAGCCAGGGATA+TGG + Chr4:7982037-7982056 MsG0480018644.01.T01:intron 35.0%
ACACACAATTTCTTAAGCCA+GGG + Chr4:7982031-7982050 MsG0480018644.01.T01:intron 35.0%
ACTTCAAAGCTGTATAATGG+AGG + Chr4:7982453-7982472 MsG0480018644.01.T01:CDS 35.0%
AGAAATCTTGGATGGTTAGT+CGG + Chr4:7982480-7982499 MsG0480018644.01.T01:CDS 35.0%
AGAAGCTTACACGTTCAATA+GGG - Chr4:7982933-7982952 None:intergenic 35.0%
AGACTAAATGGACACAACTT+AGG - Chr4:7981414-7981433 None:intergenic 35.0%
AGATTTGAATTTGTCCCTTG+AGG + Chr4:7981329-7981348 MsG0480018644.01.T01:intron 35.0%
ATAGGAAGAAAATCCAGTCA+GGG + Chr4:7981870-7981889 MsG0480018644.01.T01:intron 35.0%
GCAAACTCGTATTTGCATAA+GGG - Chr4:7981586-7981605 None:intergenic 35.0%
GCAACTTCAAAGCTGTATAA+TGG + Chr4:7982450-7982469 MsG0480018644.01.T01:CDS 35.0%
GTATAAAATCGTTGTCATGG+CGG - Chr4:7981619-7981638 None:intergenic 35.0%
GTGAGTAAACACTCCAAAAT+TGG + Chr4:7983043-7983062 MsG0480018644.01.T01:three_prime_UTR 35.0%
GTTGCCATATTGTGATGTTA+TGG - Chr4:7980657-7980676 None:intergenic 35.0%
GTTTCCCTTGTGTAAAACAA+AGG + Chr4:7982196-7982215 MsG0480018644.01.T01:intron 35.0%
TAAAGATACCAAGGTTCTTG+TGG + Chr4:7981079-7981098 MsG0480018644.01.T01:CDS 35.0%
TAGAAGCTTACACGTTCAAT+AGG - Chr4:7982934-7982953 None:intergenic 35.0%
TATAAAATCGTTGTCATGGC+GGG - Chr4:7981618-7981637 None:intergenic 35.0%
TCAACAGTTATGAACTCAGA+AGG + Chr4:7980840-7980859 MsG0480018644.01.T01:CDS 35.0%
TCCTTATCTTCCACAAACAT+TGG - Chr4:7980936-7980955 None:intergenic 35.0%
TCTTGATGTTAGACCCAATT+GGG + Chr4:7980872-7980891 MsG0480018644.01.T01:CDS 35.0%
TGCAAACTCGTATTTGCATA+AGG - Chr4:7981587-7981606 None:intergenic 35.0%
TTCTTGATGTTAGACCCAAT+TGG + Chr4:7980871-7980890 MsG0480018644.01.T01:CDS 35.0%
TTGAAGTATGCTACAATTGG+AGG + Chr4:7982558-7982577 MsG0480018644.01.T01:CDS 35.0%
! ACATTCCTAAGTGTGTTTTC+TGG + Chr4:7982699-7982718 MsG0480018644.01.T01:three_prime_UTR 35.0%
! ATAGCAAGTTTTTATGGCGA+GGG + Chr4:7981504-7981523 MsG0480018644.01.T01:intron 35.0%
! TATAGCAAGTTTTTATGGCG+AGG + Chr4:7981503-7981522 MsG0480018644.01.T01:intron 35.0%
!! AGGCTGATTCTTTTTCTTGT+TGG + Chr4:7982174-7982193 MsG0480018644.01.T01:intron 35.0%
!!! GCATTCTCGTTTTAAAAGAC+TGG + Chr4:7981654-7981673 MsG0480018644.01.T01:intron 35.0%
AATTTGTCCCTTGAGGTTAC+TGG + Chr4:7981336-7981355 MsG0480018644.01.T01:intron 40.0%
AGAACCTTGGTATCTTTACC+GGG - Chr4:7981077-7981096 None:intergenic 40.0%
ATAAAATCGTTGTCATGGCG+GGG - Chr4:7981617-7981636 None:intergenic 40.0%
ATATGTTTGTCCGAGTGGAA+TGG + Chr4:7981797-7981816 MsG0480018644.01.T01:intron 40.0%
ATTCCACTCGGACAAACATA+TGG - Chr4:7981798-7981817 None:intergenic 40.0%
CAACTGAAGGAAGTAGTAAG+AGG - Chr4:7982586-7982605 None:intergenic 40.0%
CAAGTGGAAAATGTTGTTCC+CGG + Chr4:7981056-7981075 MsG0480018644.01.T01:CDS 40.0%
CAATTAATGCGCTTGCAACA+AGG - Chr4:7982960-7982979 None:intergenic 40.0%
CACTTCTGTAAGAATCTGAC+AGG - Chr4:7983026-7983045 None:intergenic 40.0%
CATAGGAAGAAAATCCAGTC+AGG + Chr4:7981869-7981888 MsG0480018644.01.T01:intron 40.0%
CTCTGAGTTTCTTAGTCAAG+TGG + Chr4:7981040-7981059 MsG0480018644.01.T01:CDS 40.0%
GAAGGATTAAGGTAACCATG+TGG + Chr4:7981110-7981129 MsG0480018644.01.T01:intron 40.0%
GAATGTGTCTCCATATCGAT+CGG - Chr4:7982726-7982745 None:intergenic 40.0%
GAGGTTACAGAAATCTTGGA+TGG + Chr4:7982472-7982491 MsG0480018644.01.T01:CDS 40.0%
GATGATTTCTCAGACGTTGA+AGG + Chr4:7982525-7982544 MsG0480018644.01.T01:CDS 40.0%
GCATAAGGGATATGACTTTG+TGG - Chr4:7981572-7981591 None:intergenic 40.0%
GCCAATGTTTGTGGAAGATA+AGG + Chr4:7980932-7980951 MsG0480018644.01.T01:CDS 40.0%
GCTAGACAACTCATAGAATC+TGG + Chr4:7980786-7980805 MsG0480018644.01.T01:CDS 40.0%
GCTTGTTTGACACACAATGT+GGG - Chr4:7981909-7981928 None:intergenic 40.0%
GTAGAACTATGAGCAACTGA+AGG - Chr4:7982599-7982618 None:intergenic 40.0%
TAGGAAGAAAATCCAGTCAG+GGG + Chr4:7981871-7981890 MsG0480018644.01.T01:intron 40.0%
TATGTTTGTCCGAGTGGAAT+GGG + Chr4:7981798-7981817 MsG0480018644.01.T01:intron 40.0%
TTAAGCCAGGGATATGGTAA+AGG + Chr4:7982043-7982062 MsG0480018644.01.T01:intron 40.0%
TTCTTGGTGAGTGTCTATTC+AGG + Chr4:7982418-7982437 MsG0480018644.01.T01:intron 40.0%
TTGGTTTCGAACTCTTGCAT+AGG + Chr4:7981852-7981871 MsG0480018644.01.T01:intron 40.0%
TTTGCATGTGCCAATGTTTG+TGG + Chr4:7980923-7980942 MsG0480018644.01.T01:CDS 40.0%
! AGCTTGTTTGACACACAATG+TGG - Chr4:7981910-7981929 None:intergenic 40.0%
! CACGTTCAAAGTCCCAATTT+TGG - Chr4:7983059-7983078 None:intergenic 40.0%
AACAGCCTTTACCATATCCC+TGG - Chr4:7982051-7982070 None:intergenic 45.0%
ACCCAATTGGGAAAGAGAGA+AGG + Chr4:7980884-7980903 MsG0480018644.01.T01:CDS 45.0%
ACTCCTATCCAGTAACCTCA+AGG - Chr4:7981347-7981366 None:intergenic 45.0%
AGGAAGAAAATCCAGTCAGG+GGG + Chr4:7981872-7981891 MsG0480018644.01.T01:intron 45.0%
AGGAGACGCTGACATATTCA+AGG + Chr4:7982837-7982856 MsG0480018644.01.T01:three_prime_UTR 45.0%
CACTCGGACAAACATATGGT+CGG - Chr4:7981794-7981813 None:intergenic 45.0%
CTCCTATCCAGTAACCTCAA+GGG - Chr4:7981346-7981365 None:intergenic 45.0%
GCCTTCTCTCTTTCCCAATT+GGG - Chr4:7980888-7980907 None:intergenic 45.0%
TCGGTCCAGAAAACACACTT+AGG - Chr4:7982707-7982726 None:intergenic 45.0%
TGCCTTCTCTCTTTCCCAAT+TGG - Chr4:7980889-7980908 None:intergenic 45.0%
TGGCATGTGGAGAAGGATTA+AGG + Chr4:7981099-7981118 MsG0480018644.01.T01:CDS 45.0%
TGTTCCCGGTAAAGATACCA+AGG + Chr4:7981070-7981089 MsG0480018644.01.T01:CDS 45.0%
TTTAATTCTCTCCCCCTGAC+TGG - Chr4:7981886-7981905 None:intergenic 45.0%
! AATCTTGGATGGTTAGTCGG+AGG + Chr4:7982483-7982502 MsG0480018644.01.T01:CDS 45.0%
! AGAGAGAAGGCACATGTGAA+AGG + Chr4:7980897-7980916 MsG0480018644.01.T01:CDS 45.0%
! GGTTATATTGGTGCTTGGAC+TGG + Chr4:7980996-7981015 MsG0480018644.01.T01:CDS 45.0%
! GTTTTCTGGACCGATCGATA+TGG + Chr4:7982713-7982732 MsG0480018644.01.T01:three_prime_UTR 45.0%
ACCAAGGTTCTTGTGGCATG+TGG + Chr4:7981086-7981105 MsG0480018644.01.T01:CDS 50.0%
CGACCATATGTTTGTCCGAG+TGG + Chr4:7981792-7981811 MsG0480018644.01.T01:intron 50.0%
GGGATATGACTTTGTGGCTG+AGG - Chr4:7981566-7981585 None:intergenic 50.0%
GTCCCTTGAGGTTACTGGAT+AGG + Chr4:7981341-7981360 MsG0480018644.01.T01:intron 50.0%
GTTCTTGTGGCATGTGGAGA+AGG + Chr4:7981092-7981111 MsG0480018644.01.T01:CDS 50.0%
TCCACATGCCACAAGAACCT+TGG - Chr4:7981090-7981109 None:intergenic 50.0%
TGACTTTGTGGCTGAGGTGA+CGG - Chr4:7981560-7981579 None:intergenic 50.0%
!! AGGTGACGGAGTGATAAGGA+AGG - Chr4:7981546-7981565 None:intergenic 50.0%
GTCCGAGTGGAATGGGACTT+GGG + Chr4:7981805-7981824 MsG0480018644.01.T01:intron 55.0%
TGCCCAAGTCCCATTCCACT+CGG - Chr4:7981810-7981829 None:intergenic 55.0%
TGTCCGAGTGGAATGGGACT+TGG + Chr4:7981804-7981823 MsG0480018644.01.T01:intron 55.0%
! AAATCGTTGTCATGGCGGGG+CGG - Chr4:7981614-7981633 None:intergenic 55.0%
!! GCTGAGGTGACGGAGTGATA+AGG - Chr4:7981550-7981569 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7980531 7983113 7980531 ID=MsG0480018644.01;Name=MsG0480018644.01
Chr4 mRNA 7980531 7983113 7980531 ID=MsG0480018644.01.T01;Parent=MsG0480018644.01;Name=MsG0480018644.01.T01;_AED=0.40;_eAED=0.40;_QI=138|1|1|1|1|1|2|478|215
Chr4 exon 7980531 7981120 7980531 ID=MsG0480018644.01.T01:exon:1916;Parent=MsG0480018644.01.T01
Chr4 exon 7982440 7983113 7982440 ID=MsG0480018644.01.T01:exon:1917;Parent=MsG0480018644.01.T01
Chr4 five_prime_UTR 7980531 7980668 7980531 ID=MsG0480018644.01.T01:five_prime_utr;Parent=MsG0480018644.01.T01
Chr4 CDS 7980669 7981120 7980669 ID=MsG0480018644.01.T01:cds;Parent=MsG0480018644.01.T01
Chr4 CDS 7982440 7982635 7982440 ID=MsG0480018644.01.T01:cds;Parent=MsG0480018644.01.T01
Chr4 three_prime_UTR 7982636 7983113 7982636 ID=MsG0480018644.01.T01:three_prime_utr;Parent=MsG0480018644.01.T01
Gene Sequence

>MsG0480018644.01.T01

ATGGCAACTCATTTGAAGTACAATCTATTCAACACTTCAATACTTCAAAAACACAAAACACAACAAGAAAAAACTACAAGATTTCATGTTATCAATGCAACATCCAATAATATGAGTGCTAGACAACTCATAGAATCTGGTACAATAAGAACAATTTTGCCAAAAGATGCTTCAACAGTTATGAACTCAGAAGGTTTCATTCTTCTTGATGTTAGACCCAATTGGGAAAGAGAGAAGGCACATGTGAAAGGTTCTTTGCATGTGCCAATGTTTGTGGAAGATAAGGATAATGGTCCTTTAACTTTGCTTAAGAAATGGGTTCATTTTGGTTATATTGGTGCTTGGACTGGTCAATATCTTACTACTTTTAACTCTGAGTTTCTTAGTCAAGTGGAAAATGTTGTTCCCGGTAAAGATACCAAGGTTCTTGTGGCATGTGGAGAAGGATTAAGGTCAATGACAGCAACTTCAAAGCTGTATAATGGAGGTTACAGAAATCTTGGATGGTTAGTCGGAGGCTTTAGTCGTTCAAAAGACGATGATTTCTCAGACGTTGAAGGAAAAGAGAAGTTGAAGTATGCTACAATTGGAGGAGCCTCTTACTACTTCCTTCAGTTGCTCATAGTTCTACAGACAGTGAGTAAATAG

Protein sequence

>MsG0480018644.01.T01

MATHLKYNLFNTSILQKHKTQQEKTTRFHVINATSNNMSARQLIESGTIRTILPKDASTVMNSEGFILLDVRPNWEREKAHVKGSLHVPMFVEDKDNGPLTLLKKWVHFGYIGAWTGQYLTTFNSEFLSQVENVVPGKDTKVLVACGEGLRSMTATSKLYNGGYRNLGWLVGGFSRSKDDDFSDVEGKEKLKYATIGGASYYFLQLLIVLQTVSK*