AlfalfaGEDB | MsG0480023896.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023896.01

KEGG: K16276
GO: GO:0008270
PFAM: PF01814 PF05495 PF13639 PF14599

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023896.01.T01	XP_003630873.2	88.443	1272	35	8	1	1189	1	1243	0	2190

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023896.01.T01	Q8LPQ5	62.286	1286	342	16	1	1184	1	1245	0	1543

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023896.01.T01	G7L9R6	88.443	1272	35	8	1	1189	1	1243	0.0	2190

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000582.01	MsG0480023896.01	0.830629	2.636372e-55	2.793176e-52
MsG0180001085.01	MsG0480023896.01	0.802887	4.531523e-49	2.245340e-46
MsG0180003146.01	MsG0480023896.01	0.878733	2.211671e-69	1.167674e-65
MsG0180003906.01	MsG0480023896.01	0.803668	3.122965e-49	1.578620e-46
MsG0180005568.01	MsG0480023896.01	0.838949	2.121656e-57	2.886250e-54
MsG0280006349.01	MsG0480023896.01	0.810506	1.114394e-50	6.729451e-48
MsG0280008103.01	MsG0480023896.01	0.809365	1.961835e-50	1.149650e-47
MsG0280009953.01	MsG0480023896.01	0.825792	3.864569e-54	3.558340e-51
MsG0280010198.01	MsG0480023896.01	0.806880	6.635468e-50	3.642638e-47
MsG0280010974.01	MsG0480023896.01	0.802425	5.644194e-49	2.764040e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023896.01.T01	MTR_8g104410	88.443	1272	35	8	1	1189	1	1243	0.0	2190
MsG0480023896.01.T01	MTR_6g083900	72.365	1281	213	15	1	1188	1	1233	0.0	1819
MsG0480023896.01.T01	MTR_8g104410	86.460	1034	30	6	239	1189	1	1007	0.0	1728
MsG0480023896.01.T01	MTR_8g104410	24.898	245	151	3	40	251	414	658	8.32e-21	99.8
MsG0480023896.01.T01	MTR_8g104410	29.148	223	141	5	2	215	30	244	1.47e-17	89.0
MsG0480023896.01.T01	MTR_4g107440	33.448	873	512	13	5	846	1	835	2.22e-132	436
MsG0480023896.01.T01	MTR_4g107440	45.665	346	113	5	882	1180	954	1271	2.38e-88	312
MsG0480023896.01.T01	MTR_1g047740	30.822	292	122	7	946	1181	33	300	1.32e-39	149
MsG0480023896.01.T01	MTR_2g020040	31.365	271	111	7	965	1180	10	260	2.25e-35	136
MsG0480023896.01.T01	MTR_4g057310	37.156	218	106	8	977	1189	79	270	3.33e-33	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023896.01.T01	AT3G18290	62.286	1286	342	16	1	1184	1	1245	0.0	1543
MsG0480023896.01.T01	AT1G74770	32.339	872	512	21	8	844	2	830	1.42e-121	406
MsG0480023896.01.T01	AT1G74770	47.011	368	115	5	866	1180	919	1259	1.72e-96	336
MsG0480023896.01.T01	AT1G74770	32.339	872	512	21	8	844	2	830	1.52e-121	405
MsG0480023896.01.T01	AT1G74770	45.819	299	100	4	866	1111	919	1208	1.48e-71	262
MsG0480023896.01.T01	AT1G18910	32.542	842	496	17	40	860	42	832	2.66e-119	400
MsG0480023896.01.T01	AT1G18910	46.070	369	116	4	868	1180	913	1254	5.01e-97	337
MsG0480023896.01.T01	AT1G18910	26.496	234	137	5	614	842	41	244	1.33e-17	89.4
MsG0480023896.01.T01	AT3G62970	33.333	276	106	7	961	1180	23	276	2.14e-39	148
MsG0480023896.01.T01	AT5G22920	33.094	278	113	7	967	1189	21	280	6.41e-35	135

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Find 260 sgRNAs with CRISPR-Local

Find 967 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCATCATTCTTGG+TGG	0.508644	4:+90980031	None:intergenic
AAAAGACTGGAATTGAGAGA+TGG	0.598010	4:+90975040	None:intergenic
AAAGCCAATTTAACGACTTT+CGG	0.365802	4:-90976157	MsG0480023896.01.T01:CDS
AAATGATAACGGTCGAAGAG+AGG	0.559513	4:+90981269	None:intergenic
AACAAGATAAGATAGTAGGC+CGG	0.601665	4:-90974451	MsG0480023896.01.T01:CDS
AACACCGAAAGTCGTTAAAT+TGG	0.249647	4:+90976153	None:intergenic
AACTCTTGATCCTAGGAGAA+AGG	0.517330	4:-90974019	MsG0480023896.01.T01:CDS
AACTTATTCTCTTGAGCACA+AGG	0.553142	4:-90980099	MsG0480023896.01.T01:CDS
AACTTGCAACAAAGCTCCAG+GGG	0.657241	4:-90974568	MsG0480023896.01.T01:CDS
AAGAAATGAACACACAATAA+TGG	0.385401	4:-90981573	MsG0480023896.01.T01:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAAACTATAGTTGCC+AGG	+	Chr4:90986328-90986347	None:intergenic	30.0%
AAAGCCAATTTAACGACTTT+CGG	-	Chr4:90982109-90982128	MsG0480023896.01.T01:intron	30.0%
AAATAATTGCAGTCAATGGT+TGG	-	Chr4:90986481-90986500	MsG0480023896.01.T01:intron	30.0%
AAATGGTTTAAGTCGAAGAA+AGG	-	Chr4:90979782-90979801	MsG0480023896.01.T01:intron	30.0%
AAGCAGTTACTGAGTATAAT+TGG	-	Chr4:90981257-90981276	MsG0480023896.01.T01:CDS	30.0%
AAGTGTCCTATATTTAGAGA+CGG	-	Chr4:90981056-90981075	MsG0480023896.01.T01:intron	30.0%
AAGTTAATGAAGCTAGCAAA+TGG	-	Chr4:90977768-90977787	MsG0480023896.01.T01:CDS	30.0%
AATAATTACAAGGAGTTTGG+AGG	-	Chr4:90978482-90978501	MsG0480023896.01.T01:intron	30.0%
AATAATTGCAGTCAATGGTT+GGG	-	Chr4:90986482-90986501	MsG0480023896.01.T01:intron	30.0%
AATATCACCAAAACTTCGTA+GGG	+	Chr4:90979662-90979681	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	90970136	90988152	90970136	ID=MsG0480023896.01;Name=MsG0480023896.01
Chr4	mRNA	90970136	90988152	90970136	ID=MsG0480023896.01.T01;Parent=MsG0480023896.01;Name=MsG0480023896.01.T01;_AED=0.34;_eAED=0.34;_QI=267\|0.71\|0.66\|1\|0.85\|0.8\|15\|0\|1189
Chr4	exon	90970136	90970318	90970136	ID=MsG0480023896.01.T01:exon:7971;Parent=MsG0480023896.01.T01
Chr4	exon	90970417	90970488	90970417	ID=MsG0480023896.01.T01:exon:7970;Parent=MsG0480023896.01.T01
Chr4	exon	90970726	90970785	90970726	ID=MsG0480023896.01.T01:exon:7969;Parent=MsG0480023896.01.T01
Chr4	exon	90970880	90971114	90970880	ID=MsG0480023896.01.T01:exon:7968;Parent=MsG0480023896.01.T01
Chr4	exon	90973641	90973879	90973641	ID=MsG0480023896.01.T01:exon:7967;Parent=MsG0480023896.01.T01
Chr4	exon	90973981	90974162	90973981	ID=MsG0480023896.01.T01:exon:7966;Parent=MsG0480023896.01.T01
Chr4	exon	90974240	90975148	90974240	ID=MsG0480023896.01.T01:exon:7965;Parent=MsG0480023896.01.T01
Chr4	exon	90975255	90975473	90975255	ID=MsG0480023896.01.T01:exon:7964;Parent=MsG0480023896.01.T01
Chr4	exon	90975574	90975742	90975574	ID=MsG0480023896.01.T01:exon:7963;Parent=MsG0480023896.01.T01
Chr4	exon	90976025	90976253	90976025	ID=MsG0480023896.01.T01:exon:7962;Parent=MsG0480023896.01.T01
Chr4	exon	90976393	90976766	90976393	ID=MsG0480023896.01.T01:exon:7961;Parent=MsG0480023896.01.T01
Chr4	exon	90977593	90977787	90977593	ID=MsG0480023896.01.T01:exon:7960;Parent=MsG0480023896.01.T01
Chr4	exon	90979956	90980165	90979956	ID=MsG0480023896.01.T01:exon:7959;Parent=MsG0480023896.01.T01
Chr4	exon	90981226	90981690	90981226	ID=MsG0480023896.01.T01:exon:7958;Parent=MsG0480023896.01.T01
Chr4	exon	90988057	90988152	90988057	ID=MsG0480023896.01.T01:exon:7957;Parent=MsG0480023896.01.T01
Chr4	five_prime_UTR	90988057	90988152	90988057	ID=MsG0480023896.01.T01:five_prime_utr;Parent=MsG0480023896.01.T01
Chr4	five_prime_UTR	90981520	90981690	90981520	ID=MsG0480023896.01.T01:five_prime_utr;Parent=MsG0480023896.01.T01
Chr4	CDS	90981226	90981519	90981226	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90979956	90980165	90979956	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90977593	90977787	90977593	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90976393	90976766	90976393	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90976025	90976253	90976025	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90975574	90975742	90975574	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90975255	90975473	90975255	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90974240	90975148	90974240	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90973981	90974162	90973981	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90973641	90973879	90973641	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90970880	90971114	90970880	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90970726	90970785	90970726	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90970417	90970488	90970417	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01
Chr4	CDS	90970136	90970318	90970136	ID=MsG0480023896.01.T01:cds;Parent=MsG0480023896.01.T01

Gene Sequence

>MsG0480023896.01.T01

ATGGCGACGCCATTGGACGGAGGAGGAGGAGGAGTGGCGTTGCTCTCGAACTCCGCCGCGGCGAACAAAGTCGATTCCTCTTCGACTCTCAATGGCGGTTTGAAGTGTTCCAAACTCGATTCACCGATTTTGATTTTCTTGTTCTTTCATAAAGCAATTAGGAATGAGCTTGACGTTTTACATCGATTAGCCATGGCATTCGCCACCGGTAATCGTTCTGATATTCGTCCTCTCTTCGACCGTTATCATTTCCTCAACTCTATTTATCGTCATCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTAGACAGACGTGTGAAGAATGTAGCACAAACTTATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAACTCTTCCACCAAGAATGATGAGAGTTTTCCAAGAGAATTGGCATCTTGCACAGGAGCTTTACAGACATCAGTTAGTCAACACCTGGCAAAGGAAGAGGAACAGGTATTTCCTCTACTTATCGAGAAGTTCTCTCTTGTGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGTAGTATTCCGGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCCGATGAATCTCAGGATTTACGAGATTTCTTAATCAAAATTGTGCCCGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAAGTCAAAGTAGTGCTAACACAATTCAAAGTAGTGCAGATCATTCTCAAGTTCAATGTTGTTCTAGTCCACTAACCCATCTTGGAAGAGTAAATTGTGTATGCGAGTCCACATCAACTGGAAAAAGGAAACATTCTGGATCTATGTTAGATGTTTCTGATGCCACCGGAACACATCCTATAGATGAAATATTACTCTGGCATAATGCAATAAAAAAAGAGCTAAGTGAGATAGCAGTGGAAACCAGGAGGATACAACACTCTGGAGATTTTACTGATATATCAGCTTTTAATGACAGATTGCAATTCATTGCCGACGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTTATTTTTCCAGCAGTCGATGGAGAACTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAACGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATTATGGAAACCATTCAGAGGCATTTCTATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAGCTTCTCTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTTCTACCATGGTTGATAGGATCTTTAACTGATGAAGAAGCCAAAATGTTTCTGAGGAACATGCAATTTGCAGCTCCAGCAACAGATTCTGCTCTGGTCACACTCTTCAGTGGTTGGGCATGCAAGGCTCGTAATGAAGGCATGTGTTTGTCTTCAGGAACATCAGATTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGATCGGCCATCCTGTGTTTGTTCCTCTGCATCATCTCAAAGACATTGCTCGGTAACTCGAGTCAGATGGCAACAAGAGACCAGTTTAGGAGTAAACAGTAACAATTTGGGGCTTAGTTCAATTTCAACAACCAAGTCCTTGCGCTCCTTGTCTTTCAGCTCTTCTGCTCCATCTCTCAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTGAGTGACAGCGACGGGACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCATGCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCTTTGCAGTTGACCCATATGGCAGACGATTTGAGTGATAGTAATTTTGGAACTTCTGATGTCAATGATAGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTCCAGGGGATGTGTAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGAGAAGAGCGTGAACTGTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCCGCACTTACCCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCAGAATCTATATCACAGACAGAAACATCACATTGTAGCACGTCTCATAGAGGTTCTGAGTATCAGGAATGCTTGGACTACAATGATCAAATGTTTAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCTAGGAGAAAGGCATATCTTGTGCAGAATCTTTTGACAAGGTTGCTTCCGTTATTTGTGTATTCTAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCCATCTGAAGGATCATCTAACGGGGTCGAAATAGAAGGACACTCACCATCATTTCGGGACCCAGGAGAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGCTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAACGTGAGCGATCACTCAATGGACAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATTGATTATTTTCACTGCATGAAATGCAATTGCTGCCTGGGGATTAAATCATCATCTCATAAGTGCCTGGAGAAAGGTTTAGAGATGAATTGCCCAATTTGCTGCGACGACTTATTCACGTCAAGTGCTACAGTCAGAGCTCTGCCTTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCATACACTCGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTAGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCGGAGGAGCTCCCTGAAGAATATAGGGACCGTCATCAGCAAAGAATTTATATTATTTATTGTCATTTAATGAGTTTTATAACGGCCATGCAGGACATCCTTTGCAATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGTTGTATCACAAATGTGGATCTTGTGGCTCTTACAATACCCGGCTGATCAAGCGTGAGACACATTCCAGCTGCTCTTAG

Protein sequence

>MsG0480023896.01.T01

MATPLDGGGGGVALLSNSAAANKVDSSSTLNGGLKCSKLDSPILIFLFFHKAIRNELDVLHRLAMAFATGNRSDIRPLFDRYHFLNSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSTKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLVEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSANTSQSSANTIQSSADHSQVQCCSSPLTHLGRVNCVCESTSTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIESILSEGASSNSEVEFYSKLCSHADHIMETIQRHFYNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLIGSLTDEEAKMFLRNMQFAAPATDSALVTLFSGWACKARNEGMCLSSGTSDCCPAQRLSDIEENIDRPSCVCSSASSQRHCSVTRVRWQQETSLGVNSNNLGLSSISTTKSLRSLSFSSSAPSLNSSLFIWETESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDGTIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQLTHMADDLSDSNFGTSDVNDSDDVKKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESISQTETSHCSTSHRGSEYQECLDYNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTRLLPLFVYSSRWIAAQQKSPKAPSEGSSNGVEIEGHSPSFRDPGELVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSSSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTRSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQQRIYIIYCHLMSFITAMQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETHSSCS*