Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016987.01.T01 | XP_013461663.1 | 75.405 | 309 | 15 | 6 | 1 | 251 | 1 | 306 | 1.17E-137 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016987.01.T01 | Q93W88 | 47.097 | 155 | 59 | 5 | 94 | 244 | 137 | 272 | 1.01E-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016987.01.T01 | A0A072V2W2 | 75.405 | 309 | 15 | 6 | 1 | 251 | 1 | 306 | 5.59e-138 | 402 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380016987.01.T01 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048780.01 | MsG0380016987.01 | 0.811253 | 7.680052e-51 | 4.730827e-48 |
| MsG0080049040.01 | MsG0380016987.01 | 0.811994 | 5.299913e-51 | 3.329458e-48 |
| MsG0180000549.01 | MsG0380016987.01 | 0.804662 | 1.939975e-49 | 1.006051e-46 |
| MsG0180001175.01 | MsG0380016987.01 | 0.813829 | 2.099858e-51 | 1.385891e-48 |
| MsG0180001270.01 | MsG0380016987.01 | 0.835870 | 1.304119e-56 | 1.615583e-53 |
| MsG0180003531.01 | MsG0380016987.01 | 0.808193 | 3.492985e-50 | 1.984445e-47 |
| MsG0180004733.01 | MsG0380016987.01 | 0.834829 | 2.389993e-56 | 2.869719e-53 |
| MsG0180004735.01 | MsG0380016987.01 | 0.825266 | 5.147188e-54 | 4.668819e-51 |
| MsG0180004739.01 | MsG0380016987.01 | 0.814042 | 1.884013e-51 | 1.250673e-48 |
| MsG0180005349.01 | MsG0380016987.01 | 0.830794 | 2.402775e-55 | 2.558181e-52 |
| MsG0180005492.01 | MsG0380016987.01 | 0.803366 | 3.608404e-49 | 1.809853e-46 |
| MsG0180005612.01 | MsG0380016987.01 | 0.805605 | 1.231462e-49 | 6.542958e-47 |
| MsG0180005961.01 | MsG0380016987.01 | 0.813204 | 2.880781e-51 | 1.869243e-48 |
| MsG0280010661.01 | MsG0380016987.01 | 0.804871 | 1.754596e-49 | 9.149348e-47 |
| MsG0280010975.01 | MsG0380016987.01 | 0.803378 | 3.587370e-49 | 1.799893e-46 |
| MsG0380013472.01 | MsG0380016987.01 | 0.810611 | 1.057528e-50 | 6.404120e-48 |
| MsG0380013499.01 | MsG0380016987.01 | 0.809240 | 2.086135e-50 | 1.218459e-47 |
| MsG0380013530.01 | MsG0380016987.01 | 0.822935 | 1.815527e-53 | 1.541236e-50 |
| MsG0380014470.01 | MsG0380016987.01 | 0.814939 | 1.193207e-51 | 8.114937e-49 |
| MsG0380015496.01 | MsG0380016987.01 | 0.800045 | 1.732530e-48 | 7.987046e-46 |
| MsG0380015547.01 | MsG0380016987.01 | 0.827300 | 1.688351e-54 | 1.623491e-51 |
| MsG0380015603.01 | MsG0380016987.01 | 0.823480 | 1.354229e-53 | 1.167426e-50 |
| MsG0380016194.01 | MsG0380016987.01 | 0.819779 | 9.706478e-53 | 7.541234e-50 |
| MsG0380016836.01 | MsG0380016987.01 | 0.844341 | 8.029965e-59 | 1.292399e-55 |
| MsG0380016987.01 | MsG0380017033.01 | 0.820938 | 5.264253e-53 | 4.223841e-50 |
| MsG0380016987.01 | MsG0380017703.01 | 0.810465 | 1.137020e-50 | 6.858747e-48 |
| MsG0380016987.01 | MsG0380018037.01 | 0.803891 | 2.808051e-49 | 1.427710e-46 |
| MsG0380016987.01 | MsG0480018592.01 | 0.802979 | 4.337422e-49 | 2.154102e-46 |
| MsG0380016987.01 | MsG0480018644.01 | 0.814905 | 1.214287e-51 | 8.250649e-49 |
| MsG0380016987.01 | MsG0480019501.01 | 0.803371 | 3.599711e-49 | 1.805740e-46 |
| MsG0380016987.01 | MsG0480019971.01 | 0.803121 | 4.054908e-49 | 2.021095e-46 |
| MsG0380016987.01 | MsG0480020350.01 | 0.821840 | 3.259388e-53 | 2.682099e-50 |
| MsG0380016987.01 | MsG0480020690.01 | 0.801489 | 8.790289e-49 | 4.203343e-46 |
| MsG0380016987.01 | MsG0480020753.01 | 0.851479 | 8.642817e-61 | 1.751513e-57 |
| MsG0380016987.01 | MsG0480021168.01 | 0.812454 | 4.204578e-51 | 2.674698e-48 |
| MsG0380016987.01 | MsG0480021346.01 | 0.809938 | 1.477450e-50 | 8.790131e-48 |
| MsG0380016987.01 | MsG0480021377.01 | 0.805397 | 1.361633e-49 | 7.196061e-47 |
| MsG0380016987.01 | MsG0480021682.01 | 0.834816 | 2.408654e-56 | 2.890757e-53 |
| MsG0380016987.01 | MsG0480021783.01 | 0.806334 | 8.652218e-50 | 4.683716e-47 |
| MsG0380016987.01 | MsG0480022647.01 | 0.806158 | 9.423255e-50 | 5.078437e-47 |
| MsG0380016987.01 | MsG0480023314.01 | 0.821025 | 5.026778e-53 | 4.043330e-50 |
| MsG0380016987.01 | MsG0480023406.01 | 0.813890 | 2.035305e-51 | 1.345558e-48 |
| MsG0380016987.01 | MsG0480023650.01 | 0.807330 | 5.328215e-50 | 2.959472e-47 |
| MsG0380016987.01 | MsG0480023896.01 | 0.805430 | 1.340076e-49 | 7.088225e-47 |
| MsG0380016987.01 | MsG0580024455.01 | 0.814726 | 1.330344e-51 | 8.996197e-49 |
| MsG0380016987.01 | MsG0580024535.01 | -0.802220 | 6.222133e-49 | 3.030925e-46 |
| MsG0380016987.01 | MsG0580024759.01 | 0.800426 | 1.449453e-48 | 6.747221e-46 |
| MsG0380016987.01 | MsG0580027979.01 | 0.802484 | 5.490013e-49 | 2.692386e-46 |
| MsG0380016987.01 | MsG0580028306.01 | 0.812909 | 3.343404e-51 | 2.152326e-48 |
| MsG0380016987.01 | MsG0580029325.01 | 0.816142 | 6.441060e-52 | 4.527263e-49 |
| MsG0380016987.01 | MsG0580029414.01 | 0.826907 | 2.096850e-54 | 1.993233e-51 |
| MsG0380016987.01 | MsG0680030464.01 | 0.805244 | 1.465915e-49 | 7.716788e-47 |
| MsG0380016987.01 | MsG0680030627.01 | 0.824274 | 8.820155e-54 | 7.775427e-51 |
| MsG0380016987.01 | MsG0680030858.01 | 0.816166 | 6.362145e-52 | 4.474733e-49 |
| MsG0380016987.01 | MsG0680030957.01 | 0.813704 | 2.236781e-51 | 1.471327e-48 |
| MsG0380016987.01 | MsG0680033377.01 | 0.803775 | 2.966973e-49 | 1.503947e-46 |
| MsG0380016987.01 | MsG0680034064.01 | 0.813893 | 2.032868e-51 | 1.344043e-48 |
| MsG0380016987.01 | MsG0680035731.01 | 0.820378 | 7.079107e-53 | 5.592463e-50 |
| MsG0380016987.01 | MsG0680035791.01 | 0.809604 | 1.743036e-50 | 1.027970e-47 |
| MsG0380016987.01 | MsG0780037184.01 | 0.806954 | 6.399843e-50 | 3.520007e-47 |
| MsG0380016987.01 | MsG0780037662.01 | 0.808255 | 3.387813e-50 | 1.927888e-47 |
| MsG0380016987.01 | MsG0780039233.01 | 0.830770 | 2.435194e-55 | 2.590903e-52 |
| MsG0380016987.01 | MsG0780039675.01 | 0.808313 | 3.292568e-50 | 1.876508e-47 |
| MsG0380016987.01 | MsG0780039686.01 | -0.808854 | 2.523720e-50 | 1.458786e-47 |
| MsG0380016987.01 | MsG0780039746.01 | 0.818572 | 1.827616e-52 | 1.373064e-49 |
| MsG0380016987.01 | MsG0780039975.01 | 0.803753 | 2.999450e-49 | 1.519557e-46 |
| MsG0380016987.01 | MsG0780040331.01 | 0.800077 | 1.706645e-48 | 7.874190e-46 |
| MsG0380016987.01 | MsG0780040343.01 | 0.804497 | 2.099823e-49 | 1.084274e-46 |
| MsG0380016987.01 | MsG0780041004.01 | 0.803547 | 3.309522e-49 | 1.667847e-46 |
| MsG0380016987.01 | MsG0780041159.01 | 0.808060 | 3.728963e-50 | 2.110960e-47 |
| MsG0380016987.01 | MsG0780041174.01 | 0.806653 | 7.410897e-50 | 4.044272e-47 |
| MsG0380016987.01 | MsG0780041289.01 | 0.804851 | 1.771289e-49 | 9.231325e-47 |
| MsG0380016987.01 | MsG0780041385.01 | 0.803112 | 4.072546e-49 | 2.029400e-46 |
| MsG0380016987.01 | MsG0880044487.01 | 0.801034 | 1.089384e-48 | 5.150049e-46 |
| MsG0380016987.01 | MsG0880044538.01 | 0.819341 | 1.222155e-52 | 9.378417e-50 |
| MsG0380016987.01 | MsG0880044558.01 | 0.806111 | 9.640883e-50 | 5.189349e-47 |
| MsG0380016987.01 | MsG0880045648.01 | 0.807054 | 6.095049e-50 | 3.361166e-47 |
| MsG0380016987.01 | MsG0880046267.01 | 0.807367 | 5.233963e-50 | 2.909777e-47 |
| MsG0380016987.01 | MsG0880046764.01 | 0.805306 | 1.422867e-49 | 7.502039e-47 |
| MsG0380016987.01 | MsG0880046765.01 | 0.813335 | 2.695922e-51 | 1.755649e-48 |
| MsG0380016987.01 | MsG0880046791.01 | 0.839949 | 1.166530e-57 | 1.636718e-54 |
| MsG0380016987.01 | MsG0880046946.01 | -0.804888 | 1.740324e-49 | 9.078939e-47 |
| MsG0280006825.01 | MsG0380016987.01 | 0.814575 | 1.437064e-51 | 9.678398e-49 |
| MsG0280007831.01 | MsG0380016987.01 | 0.804732 | 1.875219e-49 | 9.743192e-47 |
| MsG0280009431.01 | MsG0380016987.01 | 0.806227 | 9.113771e-50 | 4.920349e-47 |
| MsG0280009756.01 | MsG0380016987.01 | 0.814938 | 1.193590e-51 | 8.117446e-49 |
| MsG0280010353.01 | MsG0380016987.01 | 0.822783 | 1.969591e-53 | 1.664829e-50 |
| MsG0280010376.01 | MsG0380016987.01 | 0.832725 | 8.025767e-56 | 9.047900e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016987.01.T01 | MTR_3g498825 | 75.405 | 309 | 15 | 6 | 1 | 251 | 1 | 306 | 1.42e-141 | 402 |
| MsG0380016987.01.T01 | MTR_8g099880 | 63.158 | 152 | 46 | 6 | 94 | 240 | 146 | 292 | 2.72e-48 | 164 |
| MsG0380016987.01.T01 | MTR_1g017350 | 60.227 | 88 | 28 | 3 | 94 | 178 | 261 | 344 | 1.45e-23 | 100 |
| MsG0380016987.01.T01 | MTR_1g017350 | 60.227 | 88 | 28 | 3 | 94 | 178 | 261 | 344 | 1.52e-23 | 100 |
| MsG0380016987.01.T01 | MTR_1g017350 | 60.227 | 88 | 28 | 3 | 94 | 178 | 261 | 344 | 1.64e-23 | 100 |
| MsG0380016987.01.T01 | MTR_1g017350 | 60.227 | 88 | 28 | 3 | 94 | 178 | 261 | 344 | 1.75e-23 | 99.8 |
| MsG0380016987.01.T01 | MTR_4g070320 | 42.361 | 144 | 65 | 4 | 50 | 179 | 89 | 228 | 7.06e-23 | 97.1 |
| MsG0380016987.01.T01 | MTR_3g116770 | 46.457 | 127 | 60 | 3 | 44 | 163 | 138 | 263 | 7.13e-23 | 97.8 |
| MsG0380016987.01.T01 | MTR_3g116770 | 46.457 | 127 | 60 | 3 | 44 | 163 | 138 | 263 | 7.94e-23 | 97.8 |
| MsG0380016987.01.T01 | MTR_8g012290 | 60.440 | 91 | 29 | 3 | 94 | 181 | 292 | 378 | 1.02e-22 | 98.2 |
| MsG0380016987.01.T01 | MTR_8g012290 | 60.440 | 91 | 29 | 3 | 94 | 181 | 292 | 378 | 1.04e-22 | 98.2 |
| MsG0380016987.01.T01 | MTR_8g065740 | 71.233 | 73 | 17 | 2 | 94 | 163 | 306 | 377 | 1.07e-22 | 97.8 |
| MsG0380016987.01.T01 | MTR_5g048860 | 61.364 | 88 | 27 | 3 | 94 | 178 | 366 | 449 | 1.28e-22 | 98.2 |
| MsG0380016987.01.T01 | MTR_7g053410 | 61.702 | 94 | 24 | 4 | 80 | 162 | 296 | 388 | 3.48e-22 | 96.7 |
| MsG0380016987.01.T01 | MTR_7g053410 | 61.702 | 94 | 24 | 4 | 80 | 162 | 296 | 388 | 3.60e-22 | 96.7 |
| MsG0380016987.01.T01 | MTR_8g062240 | 66.667 | 72 | 20 | 2 | 94 | 162 | 152 | 222 | 9.91e-21 | 90.1 |
| MsG0380016987.01.T01 | MTR_5g037250 | 59.091 | 88 | 31 | 3 | 78 | 162 | 98 | 183 | 1.51e-20 | 89.0 |
| MsG0380016987.01.T01 | MTR_1g059270 | 43.860 | 114 | 57 | 3 | 94 | 204 | 161 | 270 | 3.82e-19 | 86.7 |
| MsG0380016987.01.T01 | MTR_1g059270 | 50.562 | 89 | 37 | 3 | 94 | 179 | 161 | 245 | 1.34e-18 | 83.6 |
| MsG0380016987.01.T01 | MTR_7g092510 | 49.020 | 102 | 45 | 3 | 94 | 192 | 174 | 271 | 2.56e-18 | 84.3 |
| MsG0380016987.01.T01 | MTR_1g069155 | 40.449 | 89 | 51 | 1 | 77 | 165 | 304 | 390 | 6.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016987.01.T01 | AT5G50915 | 47.097 | 155 | 59 | 5 | 94 | 244 | 137 | 272 | 1.03e-31 | 119 |
| MsG0380016987.01.T01 | AT5G50915 | 47.097 | 155 | 59 | 5 | 94 | 244 | 137 | 272 | 1.03e-31 | 119 |
| MsG0380016987.01.T01 | AT5G50915 | 50.355 | 141 | 44 | 5 | 94 | 231 | 137 | 254 | 3.58e-31 | 118 |
| MsG0380016987.01.T01 | AT5G50915 | 50.355 | 141 | 44 | 5 | 94 | 231 | 137 | 254 | 3.58e-31 | 118 |
| MsG0380016987.01.T01 | AT1G10120 | 46.923 | 130 | 61 | 4 | 64 | 190 | 178 | 302 | 7.09e-25 | 103 |
| MsG0380016987.01.T01 | AT1G10120 | 46.923 | 130 | 61 | 4 | 64 | 190 | 178 | 302 | 7.09e-25 | 103 |
| MsG0380016987.01.T01 | AT1G68920 | 50.806 | 124 | 49 | 4 | 76 | 191 | 281 | 400 | 1.64e-24 | 103 |
| MsG0380016987.01.T01 | AT1G68920 | 50.806 | 124 | 49 | 4 | 76 | 191 | 281 | 400 | 1.64e-24 | 103 |
| MsG0380016987.01.T01 | AT1G68920 | 50.806 | 124 | 49 | 4 | 76 | 191 | 281 | 400 | 1.64e-24 | 103 |
| MsG0380016987.01.T01 | AT1G68920 | 50.806 | 124 | 49 | 4 | 76 | 191 | 280 | 399 | 1.70e-24 | 103 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 202 | 300 | 2.92e-24 | 101 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 173 | 271 | 2.96e-24 | 100 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 224 | 322 | 5.37e-24 | 100 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 224 | 322 | 5.37e-24 | 100 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 224 | 322 | 5.37e-24 | 100 |
| MsG0380016987.01.T01 | AT1G26260 | 55.340 | 103 | 39 | 3 | 94 | 193 | 224 | 322 | 5.37e-24 | 100 |
| MsG0380016987.01.T01 | AT1G59640 | 41.358 | 162 | 75 | 6 | 20 | 162 | 47 | 207 | 7.69e-23 | 95.5 |
| MsG0380016987.01.T01 | AT5G48560 | 61.290 | 93 | 29 | 3 | 94 | 183 | 302 | 390 | 9.22e-23 | 98.2 |
| MsG0380016987.01.T01 | AT5G48560 | 61.290 | 93 | 29 | 3 | 94 | 183 | 302 | 390 | 1.09e-22 | 98.2 |
| MsG0380016987.01.T01 | AT3G07340 | 56.481 | 108 | 34 | 5 | 78 | 178 | 241 | 342 | 1.96e-22 | 97.1 |
| MsG0380016987.01.T01 | AT1G59640 | 41.975 | 162 | 74 | 5 | 20 | 162 | 47 | 207 | 2.57e-22 | 95.5 |
| MsG0380016987.01.T01 | AT3G07340 | 56.481 | 108 | 34 | 5 | 78 | 178 | 241 | 342 | 2.74e-22 | 96.7 |
| MsG0380016987.01.T01 | AT4G34530 | 56.863 | 102 | 32 | 3 | 65 | 163 | 152 | 244 | 3.57e-22 | 95.1 |
| MsG0380016987.01.T01 | AT3G23690 | 56.180 | 89 | 34 | 3 | 94 | 178 | 192 | 279 | 3.10e-21 | 92.8 |
| MsG0380016987.01.T01 | AT2G42300 | 53.191 | 94 | 36 | 4 | 94 | 184 | 186 | 274 | 6.39e-20 | 87.8 |
| MsG0380016987.01.T01 | AT4G36540 | 55.056 | 89 | 33 | 3 | 94 | 179 | 142 | 226 | 7.14e-20 | 88.2 |
| MsG0380016987.01.T01 | AT4G36540 | 55.056 | 89 | 33 | 3 | 94 | 179 | 142 | 226 | 7.48e-20 | 88.2 |
| MsG0380016987.01.T01 | AT1G73830 | 53.261 | 92 | 38 | 3 | 94 | 182 | 148 | 237 | 8.47e-20 | 87.4 |
| MsG0380016987.01.T01 | AT1G18400 | 53.261 | 92 | 38 | 3 | 94 | 182 | 146 | 235 | 1.04e-19 | 87.0 |
| MsG0380016987.01.T01 | AT1G18400 | 55.294 | 85 | 33 | 3 | 94 | 175 | 146 | 228 | 1.64e-19 | 86.3 |
| MsG0380016987.01.T01 | AT1G73830 | 55.294 | 85 | 33 | 3 | 94 | 175 | 148 | 230 | 3.62e-19 | 85.5 |
| MsG0380016987.01.T01 | AT3G57800 | 55.172 | 87 | 32 | 3 | 94 | 177 | 205 | 287 | 4.26e-19 | 87.0 |
| MsG0380016987.01.T01 | AT2G18300 | 49.020 | 102 | 45 | 3 | 94 | 192 | 186 | 283 | 5.17e-19 | 86.3 |
| MsG0380016987.01.T01 | AT2G18300 | 61.644 | 73 | 24 | 2 | 94 | 163 | 186 | 257 | 1.49e-18 | 85.1 |
| MsG0380016987.01.T01 | AT2G42300 | 51.685 | 89 | 36 | 3 | 94 | 179 | 186 | 270 | 2.28e-18 | 84.3 |
| MsG0380016987.01.T01 | AT2G18300 | 61.644 | 73 | 24 | 2 | 94 | 163 | 186 | 257 | 2.38e-18 | 84.7 |
| MsG0380016987.01.T01 | AT5G62610 | 56.977 | 86 | 27 | 4 | 86 | 162 | 140 | 224 | 2.43e-18 | 83.6 |
| MsG0380016987.01.T01 | AT5G62610 | 56.977 | 86 | 27 | 4 | 86 | 162 | 140 | 224 | 2.43e-18 | 83.6 |
| MsG0380016987.01.T01 | AT1G25330 | 46.903 | 113 | 53 | 4 | 79 | 187 | 91 | 200 | 5.93e-18 | 81.3 |
| MsG0380016987.01.T01 | AT2G24260 | 53.521 | 71 | 28 | 2 | 89 | 156 | 31 | 99 | 7.54e-13 | 67.4 |
| MsG0380016987.01.T01 | AT4G30980 | 54.930 | 71 | 25 | 3 | 91 | 156 | 126 | 194 | 2.37e-12 | 67.0 |
| MsG0380016987.01.T01 | AT2G24260 | 53.521 | 71 | 28 | 2 | 89 | 156 | 134 | 202 | 2.43e-12 | 67.0 |
| MsG0380016987.01.T01 | AT4G30980 | 54.930 | 71 | 25 | 3 | 91 | 156 | 174 | 242 | 4.83e-12 | 66.2 |
Find 73 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAGGAGTAGCTTCTTTC+TGG | 0.119843 | 3:+90354974 | None:intergenic |
| GTGAGGGTTAGTATTGTTTC+TGG | 0.191984 | 3:+90356727 | None:intergenic |
| AAAAGATATGGTCTTATATT+TGG | 0.232847 | 3:+90354867 | None:intergenic |
| AATCAATATGAGTACATTAA+AGG | 0.261803 | 3:-90354935 | MsG0380016987.01.T01:CDS |
| TCCACAGTCTTCCATGGTTC+TGG | 0.296713 | 3:-90356816 | MsG0380016987.01.T01:CDS |
| GCAAAAGTTGTGCCTTGTTT+AGG | 0.309108 | 3:+90355481 | None:intergenic |
| CTCAGTTATGGTAGTAACTT+TGG | 0.320242 | 3:+90356871 | None:intergenic |
| AGCTGCTAATGACTACCTTT+TGG | 0.330118 | 3:-90355422 | MsG0380016987.01.T01:CDS |
| TGAATGAATCTACTGAGTTT+TGG | 0.336323 | 3:-90354584 | MsG0380016987.01.T01:three_prime_UTR |
| TTTATGGTAAACCAGGTAAC+TGG | 0.337700 | 3:-90355895 | MsG0380016987.01.T01:intron |
| ATGAGTTTGAAAATGCAATT+AGG | 0.360243 | 3:+90357040 | None:intergenic |
| AACTGTGAAGGTGGAGGAGG+AGG | 0.387298 | 3:+90356941 | None:intergenic |
| ATCAATATGAGTACATTAAA+GGG | 0.387629 | 3:-90354934 | MsG0380016987.01.T01:CDS |
| GCATCATTATACTGTATGTA+TGG | 0.394123 | 3:-90354562 | MsG0380016987.01.T01:three_prime_UTR |
| AACAGACCTAGACACTCTTT+TGG | 0.397586 | 3:-90355665 | MsG0380016987.01.T01:CDS |
| CTACAAGGCCATGCATTTGT+TGG | 0.408347 | 3:-90354635 | MsG0380016987.01.T01:three_prime_UTR |
| GTTCTGGACAAGCTTGAAAA+TGG | 0.416319 | 3:-90356800 | MsG0380016987.01.T01:CDS |
| CAACGGATCTAGAAAAGATA+TGG | 0.418235 | 3:+90354855 | None:intergenic |
| TGAAACTGTGAAGGTGGAGG+AGG | 0.419275 | 3:+90356938 | None:intergenic |
| AGAAGGTTCATTCTCAGTTA+TGG | 0.434337 | 3:+90356859 | None:intergenic |
| AATTTCGATGTTACTTAGCT+AGG | 0.436988 | 3:+90354773 | None:intergenic |
| GAAGATGTTGGTTGGAGTCA+TGG | 0.483883 | 3:+90355447 | None:intergenic |
| GAAGAGAGAAAATAAGTGAA+AGG | 0.496748 | 3:-90356081 | MsG0380016987.01.T01:CDS |
| ATAGTAATGAAGCACTCAAA+AGG | 0.497257 | 3:+90357088 | None:intergenic |
| CCAGAAAGAAGCTACTCCTA+TGG | 0.497309 | 3:-90354974 | MsG0380016987.01.T01:CDS |
| GACACAGATGATAATGTTGA+TGG | 0.508396 | 3:+90355517 | None:intergenic |
| GAAGCACTCAAAAGGAAAGT+TGG | 0.511249 | 3:+90357096 | None:intergenic |
| ATTAGCAGCTTGGAAGATGT+TGG | 0.513901 | 3:+90355435 | None:intergenic |
| TGTGGTGGCAGTTATTCTGT+TGG | 0.516906 | 3:-90354713 | MsG0380016987.01.T01:three_prime_UTR |
| GGCCATGCATTTGTTGGTCT+AGG | 0.518577 | 3:-90354629 | MsG0380016987.01.T01:three_prime_UTR |
| ATTATCAGAAATAAATAACT+TGG | 0.522191 | 3:-90355545 | MsG0380016987.01.T01:intron |
| AAGTTGCAGCAACTTGTGCC+AGG | 0.526665 | 3:-90356052 | MsG0380016987.01.T01:CDS |
| GGGTGAAACTGTGAAGGTGG+AGG | 0.526667 | 3:+90356935 | None:intergenic |
| ACTTGTGCCAGGCTGTGATA+AGG | 0.531492 | 3:-90356041 | MsG0380016987.01.T01:CDS |
| AAAGGTAGTCATTAGCAGCT+TGG | 0.531755 | 3:+90355425 | None:intergenic |
| CCATGGAAGACTGTGGACTA+AGG | 0.533292 | 3:+90356822 | None:intergenic |
| CCTTAGTCCACAGTCTTCCA+TGG | 0.535388 | 3:-90356822 | MsG0380016987.01.T01:CDS |
| GCAGCTTGGAAGATGTTGGT+TGG | 0.538644 | 3:+90355439 | None:intergenic |
| TTAATAATATCTTGATGAAG+AGG | 0.545994 | 3:+90356914 | None:intergenic |
| AATACCAAGTGTTAATCCAT+AGG | 0.549267 | 3:+90354958 | None:intergenic |
| AGGTTGTTCTTAAGAAAGAG+TGG | 0.556213 | 3:+90357060 | None:intergenic |
| ATATACATAAATCTCTAGCT+AGG | 0.556430 | 3:+90354606 | None:intergenic |
| TTGAAGCTGAAGTATCCAAA+AGG | 0.556829 | 3:+90355407 | None:intergenic |
| GTTCTCCTCTTCTTCTCCGT+AGG | 0.559768 | 3:+90356749 | None:intergenic |
| ATAGTCCTACGGAGAAGAAG+AGG | 0.562653 | 3:-90356754 | MsG0380016987.01.T01:CDS |
| AATGATGAGTCAACAAGGAA+AGG | 0.563177 | 3:+90356989 | None:intergenic |
| ATGAGTCAACAAGGAAAGGA+TGG | 0.563812 | 3:+90356993 | None:intergenic |
| TACTCCTATGGATTAACACT+TGG | 0.565564 | 3:-90354962 | MsG0380016987.01.T01:CDS |
| AATATTATTACATGAGAGTG+AGG | 0.568444 | 3:+90356710 | None:intergenic |
| TTAAAGGGTATCAAAATGAA+AGG | 0.570876 | 3:-90354919 | MsG0380016987.01.T01:CDS |
| TAGGATCAATACTAGTCTCT+CGG | 0.571968 | 3:+90354792 | None:intergenic |
| TTGAATACATTATTGCTACA+AGG | 0.575384 | 3:-90354650 | MsG0380016987.01.T01:three_prime_UTR |
| TGACCTACCTTATCACAGCC+TGG | 0.577941 | 3:+90356034 | None:intergenic |
| TATCATTATTGATAAATGAG+AGG | 0.580449 | 3:-90354673 | MsG0380016987.01.T01:three_prime_UTR |
| GTCTAACCAAAAGAGTGTCT+AGG | 0.588703 | 3:+90355659 | None:intergenic |
| TTCAAGCTTGTCCAGAACCA+TGG | 0.592122 | 3:+90356805 | None:intergenic |
| GTTGCCATGTCATAGAACAT+AGG | 0.595363 | 3:+90355685 | None:intergenic |
| AGAGGGTGAAACTGTGAAGG+TGG | 0.604355 | 3:+90356932 | None:intergenic |
| GTCTTTACAGAATCAAGTAG+AGG | 0.604540 | 3:-90355834 | MsG0380016987.01.T01:intron |
| GTCATCAAATGTTGTCTCTG+AGG | 0.606377 | 3:-90355365 | MsG0380016987.01.T01:intron |
| GGCCTAGACCAACAAATGCA+TGG | 0.608179 | 3:+90354627 | None:intergenic |
| TAATAATATCTTGATGAAGA+GGG | 0.621927 | 3:+90356915 | None:intergenic |
| GTGCCAGGCTGTGATAAGGT+AGG | 0.637230 | 3:-90356037 | MsG0380016987.01.T01:intron |
| ATATTATTACATGAGAGTGA+GGG | 0.640855 | 3:+90356711 | None:intergenic |
| TCCAGAACCATGGAAGACTG+TGG | 0.648687 | 3:+90356815 | None:intergenic |
| GCATGAATGATGAGTCAACA+AGG | 0.650211 | 3:+90356984 | None:intergenic |
| TGGTAAACCAGGTAACTGGA+AGG | 0.653135 | 3:-90355891 | MsG0380016987.01.T01:intron |
| AAATAACTGAAACGGAACAA+CGG | 0.653139 | 3:+90354838 | None:intergenic |
| CATTGCAATAGTCCTAAACA+AGG | 0.657273 | 3:-90355493 | MsG0380016987.01.T01:CDS |
| GTAGTGATTGATTCTTGTGG+TGG | 0.663454 | 3:-90354728 | MsG0380016987.01.T01:three_prime_UTR |
| TGAAGAGGGTGAAACTGTGA+AGG | 0.663457 | 3:+90356929 | None:intergenic |
| GAATCCTATGTTCTATGACA+TGG | 0.666100 | 3:-90355689 | MsG0380016987.01.T01:CDS |
| GAAGTAGTGATTGATTCTTG+TGG | 0.683457 | 3:-90354731 | MsG0380016987.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAATTATTATTTA+TGG | - | Chr3:90355703-90355722 | MsG0380016987.01.T01:CDS | 0.0% |
| !! | TTAATTTACTTAATAATACT+TGG | - | Chr3:90356519-90356538 | MsG0380016987.01.T01:intron | 10.0% |
| !!! | TAATATTTTTCTTACTATTA+TGG | - | Chr3:90357095-90357114 | MsG0380016987.01.T01:five_prime_UTR | 10.0% |
| !! | AAAATGATTTAATCCTAAAA+TGG | - | Chr3:90356292-90356311 | MsG0380016987.01.T01:intron | 15.0% |
| !! | AATTATATAATATAAGAGAC+AGG | + | Chr3:90356500-90356519 | None:intergenic | 15.0% |
| !! | ATTATCAGAAATAAATAACT+TGG | - | Chr3:90356069-90356088 | MsG0380016987.01.T01:CDS | 15.0% |
| !!! | ATTTTTAGCTTTTTTACATT+AGG | - | Chr3:90356583-90356602 | MsG0380016987.01.T01:intron | 15.0% |
| !!! | GTGAATTTTAAATTAATGAA+AGG | + | Chr3:90356428-90356447 | None:intergenic | 15.0% |
| !!! | TTTAGGATTAAATCATTTTT+TGG | + | Chr3:90356291-90356310 | None:intergenic | 15.0% |
| !! | AATCAATATGAGTACATTAA+AGG | - | Chr3:90356679-90356698 | MsG0380016987.01.T01:intron | 20.0% |
| !! | ATCAATATGAGTACATTAAA+GGG | - | Chr3:90356680-90356699 | MsG0380016987.01.T01:intron | 20.0% |
| !! | ATGTTGCAAATTGAATTAAT+TGG | - | Chr3:90355491-90355510 | MsG0380016987.01.T01:CDS | 20.0% |
| !! | ATTATTATTTATGGTAAACC+AGG | - | Chr3:90355712-90355731 | MsG0380016987.01.T01:CDS | 20.0% |
| !! | TAATAATATCTTGATGAAGA+GGG | + | Chr3:90354702-90354721 | None:intergenic | 20.0% |
| !! | TAATTGGATGAATTATATTC+AGG | - | Chr3:90355507-90355526 | MsG0380016987.01.T01:CDS | 20.0% |
| !! | TATCATTATTGATAAATGAG+AGG | - | Chr3:90356941-90356960 | MsG0380016987.01.T01:CDS | 20.0% |
| !! | TGTTAGTAATTAAATATGAC+AGG | - | Chr3:90355202-90355221 | MsG0380016987.01.T01:intron | 20.0% |
| !! | TTAATAATATCTTGATGAAG+AGG | + | Chr3:90354703-90354722 | None:intergenic | 20.0% |
| !!! | AAAAGATATGGTCTTATATT+TGG | + | Chr3:90356750-90356769 | None:intergenic | 20.0% |
| !!! | AAACTTGTGGATAATTTTTT+TGG | - | Chr3:90355063-90355082 | MsG0380016987.01.T01:intron | 20.0% |
| !!! | AGAATAATTACATCCATTTT+AGG | + | Chr3:90356308-90356327 | None:intergenic | 20.0% |
| !!! | TTAGCACTTTTTTTATACTA+TGG | - | Chr3:90355096-90355115 | MsG0380016987.01.T01:intron | 20.0% |
| ! | AATATTATTACATGAGAGTG+AGG | + | Chr3:90354907-90354926 | None:intergenic | 25.0% |
| ! | AGACATGAAGATAACTAAAA+GGG | + | Chr3:90355463-90355482 | None:intergenic | 25.0% |
| ! | AGAGTCAAAAATAACTGAAA+CGG | + | Chr3:90356787-90356806 | None:intergenic | 25.0% |
| ! | ATATACATAAATCTCTAGCT+AGG | + | Chr3:90357011-90357030 | None:intergenic | 25.0% |
| ! | ATATTATTACATGAGAGTGA+GGG | + | Chr3:90354906-90354925 | None:intergenic | 25.0% |
| ! | ATGAGTTTGAAAATGCAATT+AGG | + | Chr3:90354577-90354596 | None:intergenic | 25.0% |
| ! | TAATCAACTCAATTCATAAC+AGG | + | Chr3:90355168-90355187 | None:intergenic | 25.0% |
| ! | TATATGATGATTCACATGTT+AGG | - | Chr3:90356003-90356022 | MsG0380016987.01.T01:intron | 25.0% |
| ! | TTGAATACATTATTGCTACA+AGG | - | Chr3:90356964-90356983 | MsG0380016987.01.T01:CDS | 25.0% |
| !! | ACTAGTATTTTCATTTCATG+TGG | - | Chr3:90355405-90355424 | MsG0380016987.01.T01:CDS | 25.0% |
| !! | ATAACTAAAAGGGACATTTT+TGG | + | Chr3:90355453-90355472 | None:intergenic | 25.0% |
| !! | CCACAAGTTTTCTTAAAATA+AGG | + | Chr3:90355053-90355072 | None:intergenic | 25.0% |
| !! | CTAGTATTTTCATTTCATGT+GGG | - | Chr3:90355406-90355425 | MsG0380016987.01.T01:CDS | 25.0% |
| !! | CTGACAAAAATAACATTTTC+AGG | - | Chr3:90356337-90356356 | MsG0380016987.01.T01:intron | 25.0% |
| !! | TAGTATTTTCATTTCATGTG+GGG | - | Chr3:90355407-90355426 | MsG0380016987.01.T01:CDS | 25.0% |
| !!! | CAAAAATAACATTTTCAGGA+TGG | - | Chr3:90356341-90356360 | MsG0380016987.01.T01:intron | 25.0% |
| !!! | CCTTATTTTAAGAAAACTTG+TGG | - | Chr3:90355050-90355069 | MsG0380016987.01.T01:intron | 25.0% |
| !!! | TAGCTTTTTTACATTAGGTA+AGG | - | Chr3:90356588-90356607 | MsG0380016987.01.T01:intron | 25.0% |
| !!! | TTAAAGGGTATCAAAATGAA+AGG | - | Chr3:90356695-90356714 | MsG0380016987.01.T01:intron | 25.0% |
| !!! | TTTGAGACTTTTAATTGCAT+GGG | + | Chr3:90355635-90355654 | None:intergenic | 25.0% |
| !!! | TTTTGAGACTTTTAATTGCA+TGG | + | Chr3:90355636-90355655 | None:intergenic | 25.0% |
| AAATAACTGAAACGGAACAA+CGG | + | Chr3:90356779-90356798 | None:intergenic | 30.0% | |
| AATACCAAGTGTTAATCCAT+AGG | + | Chr3:90356659-90356678 | None:intergenic | 30.0% | |
| CAAAAGTTTCTTCATTCACA+TGG | - | Chr3:90356383-90356402 | MsG0380016987.01.T01:intron | 30.0% | |
| GAAAAACAAAGAAGATGAGA+AGG | - | Chr3:90355258-90355277 | MsG0380016987.01.T01:intron | 30.0% | |
| GAAGAGAGAAAATAAGTGAA+AGG | - | Chr3:90355533-90355552 | MsG0380016987.01.T01:CDS | 30.0% | |
| GAGACATGAAGATAACTAAA+AGG | + | Chr3:90355464-90355483 | None:intergenic | 30.0% | |
| GCATCATTATACTGTATGTA+TGG | - | Chr3:90357052-90357071 | MsG0380016987.01.T01:five_prime_UTR | 30.0% | |
| TACTCAGAAAAATAGTCCTA+CGG | - | Chr3:90354849-90354868 | MsG0380016987.01.T01:three_prime_UTR | 30.0% | |
| TATCTCTAATCTTCTGTCAT+AGG | + | Chr3:90355017-90355036 | None:intergenic | 30.0% | |
| TCTAGCAGTGATATATATGA+TGG | + | Chr3:90354949-90354968 | None:intergenic | 30.0% | |
| TTGGAATTGTATCATACAAG+CGG | + | Chr3:90355434-90355453 | None:intergenic | 30.0% | |
| ! | AATTTCGATGTTACTTAGCT+AGG | + | Chr3:90356844-90356863 | None:intergenic | 30.0% |
| ! | AGTGATATATATGATGGAGA+TGG | + | Chr3:90354943-90354962 | None:intergenic | 30.0% |
| ! | ATAGTAATGAAGCACTCAAA+AGG | + | Chr3:90354529-90354548 | None:intergenic | 30.0% |
| ! | CAGCTTCAATTTTTCTACAA+GGG | - | Chr3:90356221-90356240 | MsG0380016987.01.T01:intron | 30.0% |
| ! | TCAGCTTCAATTTTTCTACA+AGG | - | Chr3:90356220-90356239 | MsG0380016987.01.T01:intron | 30.0% |
| ! | TGAATGAATCTACTGAGTTT+TGG | - | Chr3:90357030-90357049 | MsG0380016987.01.T01:exon | 30.0% |
| ! | TTGCATTTTCAAACTCATCA+TGG | - | Chr3:90354579-90354598 | MsG0380016987.01.T01:three_prime_UTR | 30.0% |
| !! | AAAAGATCAGAGAAAGTGTT+TGG | - | Chr3:90355294-90355313 | MsG0380016987.01.T01:intron | 30.0% |
| !! | AATATTCTCAAGCTGTTTTG+TGG | - | Chr3:90355810-90355829 | MsG0380016987.01.T01:intron | 30.0% |
| !!! | AAACATGTTGGTAGTTTTGT+AGG | + | Chr3:90356463-90356482 | None:intergenic | 30.0% |
| !!! | AACATGTTGGTAGTTTTGTA+GGG | + | Chr3:90356462-90356481 | None:intergenic | 30.0% |
| !!! | TCAACTCTTATGTTGCTTTT+TGG | + | Chr3:90356619-90356638 | None:intergenic | 30.0% |
| !!! | TCTGCATTTTCTGTCATTTT+CGG | + | Chr3:90356727-90356746 | None:intergenic | 30.0% |
| AATGATGAGTCAACAAGGAA+AGG | + | Chr3:90354628-90354647 | None:intergenic | 35.0% | |
| AGAAGGTTCATTCTCAGTTA+TGG | + | Chr3:90354758-90354777 | None:intergenic | 35.0% | |
| AGGTTGTTCTTAAGAAAGAG+TGG | + | Chr3:90354557-90354576 | None:intergenic | 35.0% | |
| CAACGGATCTAGAAAAGATA+TGG | + | Chr3:90356762-90356781 | None:intergenic | 35.0% | |
| CATTGCAATAGTCCTAAACA+AGG | - | Chr3:90356121-90356140 | MsG0380016987.01.T01:intron | 35.0% | |
| CTCAGTTATGGTAGTAACTT+TGG | + | Chr3:90354746-90354765 | None:intergenic | 35.0% | |
| GAATCCTATGTTCTATGACA+TGG | - | Chr3:90355925-90355944 | MsG0380016987.01.T01:intron | 35.0% | |
| GTCTTTACAGAATCAAGTAG+AGG | - | Chr3:90355780-90355799 | MsG0380016987.01.T01:intron | 35.0% | |
| TTGAGAGCTTACAAACATGT+TGG | + | Chr3:90356475-90356494 | None:intergenic | 35.0% | |
| TTTATGGTAAACCAGGTAAC+TGG | - | Chr3:90355719-90355738 | MsG0380016987.01.T01:intron | 35.0% | |
| ! | CAATTTTTCTACAAGGGCAA+AGG | - | Chr3:90356227-90356246 | MsG0380016987.01.T01:intron | 35.0% |
| ! | GAAGTAGTGATTGATTCTTG+TGG | - | Chr3:90356883-90356902 | MsG0380016987.01.T01:CDS | 35.0% |
| ! | GACACAGATGATAATGTTGA+TGG | + | Chr3:90356100-90356119 | None:intergenic | 35.0% |
| ! | TACTCCTATGGATTAACACT+TGG | - | Chr3:90356652-90356671 | MsG0380016987.01.T01:intron | 35.0% |
| ! | TAGGATCAATACTAGTCTCT+CGG | + | Chr3:90356825-90356844 | None:intergenic | 35.0% |
| ! | TTGAAGCTGAAGTATCCAAA+AGG | + | Chr3:90356210-90356229 | None:intergenic | 35.0% |
| !! | TTCAGGATGGTAGTCATTTT+TGG | - | Chr3:90356354-90356373 | MsG0380016987.01.T01:intron | 35.0% |
| !!! | AGGTTTTTGGTGAAAGAAGA+AGG | + | Chr3:90354775-90354794 | None:intergenic | 35.0% |
| !!! | TCAGGATGGTAGTCATTTTT+GGG | - | Chr3:90356355-90356374 | MsG0380016987.01.T01:intron | 35.0% |
| AAAGGTAGTCATTAGCAGCT+TGG | + | Chr3:90356192-90356211 | None:intergenic | 40.0% | |
| ACCTTCATGACAGCACATAT+AGG | - | Chr3:90355609-90355628 | MsG0380016987.01.T01:intron | 40.0% | |
| ATGAGTCAACAAGGAAAGGA+TGG | + | Chr3:90354624-90354643 | None:intergenic | 40.0% | |
| ATTAGCAGCTTGGAAGATGT+TGG | + | Chr3:90356182-90356201 | None:intergenic | 40.0% | |
| GCATGAATGATGAGTCAACA+AGG | + | Chr3:90354633-90354652 | None:intergenic | 40.0% | |
| GTCATCAAATGTTGTCTCTG+AGG | - | Chr3:90356249-90356268 | MsG0380016987.01.T01:intron | 40.0% | |
| GTTGCCATGTCATAGAACAT+AGG | + | Chr3:90355932-90355951 | None:intergenic | 40.0% | |
| TGTACTATACCCTTTCAGCA+AGG | + | Chr3:90355383-90355402 | None:intergenic | 40.0% | |
| ! | AACAGACCTAGACACTCTTT+TGG | - | Chr3:90355949-90355968 | MsG0380016987.01.T01:intron | 40.0% |
| ! | AGCTGCTAATGACTACCTTT+TGG | - | Chr3:90356192-90356211 | MsG0380016987.01.T01:intron | 40.0% |
| ! | GAAGCACTCAAAAGGAAAGT+TGG | + | Chr3:90354521-90354540 | None:intergenic | 40.0% |
| ! | GTAGTGATTGATTCTTGTGG+TGG | - | Chr3:90356886-90356905 | MsG0380016987.01.T01:CDS | 40.0% |
| ! | GTGAGGGTTAGTATTGTTTC+TGG | + | Chr3:90354890-90354909 | None:intergenic | 40.0% |
| ! | GTTCTGGACAAGCTTGAAAA+TGG | - | Chr3:90354814-90354833 | MsG0380016987.01.T01:three_prime_UTR | 40.0% |
| !! | AGACTGTGGACTAAGGTTTT+TGG | + | Chr3:90354788-90354807 | None:intergenic | 40.0% |
| !! | CACTCTTTTGGTTAGACAAG+AGG | - | Chr3:90355961-90355980 | MsG0380016987.01.T01:intron | 40.0% |
| !! | GCAAAAGTTGTGCCTTGTTT+AGG | + | Chr3:90356136-90356155 | None:intergenic | 40.0% |
| !! | GTCTAACCAAAAGAGTGTCT+AGG | + | Chr3:90355958-90355977 | None:intergenic | 40.0% |
| !!! | GATGGTAGTCATTTTTGGGA+GGG | - | Chr3:90356359-90356378 | MsG0380016987.01.T01:intron | 40.0% |
| ATAAGAGCCTTCCAGTTACC+TGG | + | Chr3:90355733-90355752 | None:intergenic | 45.0% | |
| ATAGTCCTACGGAGAAGAAG+AGG | - | Chr3:90354860-90354879 | MsG0380016987.01.T01:three_prime_UTR | 45.0% | |
| CCAGAAAGAAGCTACTCCTA+TGG | - | Chr3:90356640-90356659 | MsG0380016987.01.T01:intron | 45.0% | |
| CCATAGGAGTAGCTTCTTTC+TGG | + | Chr3:90356643-90356662 | None:intergenic | 45.0% | |
| CTACAAGGCCATGCATTTGT+TGG | - | Chr3:90356979-90356998 | MsG0380016987.01.T01:CDS | 45.0% | |
| GACAGGATAATGCAGCAGAA+GGG | - | Chr3:90355219-90355238 | MsG0380016987.01.T01:intron | 45.0% | |
| GCCTATATGTGCTGTCATGA+AGG | + | Chr3:90355613-90355632 | None:intergenic | 45.0% | |
| TGAAGAGGGTGAAACTGTGA+AGG | + | Chr3:90354688-90354707 | None:intergenic | 45.0% | |
| TGACAGGATAATGCAGCAGA+AGG | - | Chr3:90355218-90355237 | MsG0380016987.01.T01:intron | 45.0% | |
| TGGTAAACCAGGTAACTGGA+AGG | - | Chr3:90355723-90355742 | MsG0380016987.01.T01:intron | 45.0% | |
| TGTGGTGGCAGTTATTCTGT+TGG | - | Chr3:90356901-90356920 | MsG0380016987.01.T01:CDS | 45.0% | |
| TTCAAGCTTGTCCAGAACCA+TGG | + | Chr3:90354812-90354831 | None:intergenic | 45.0% | |
| ! | GAAGATGTTGGTTGGAGTCA+TGG | + | Chr3:90356170-90356189 | None:intergenic | 45.0% |
| !!! | GGATGGTAGTCATTTTTGGG+AGG | - | Chr3:90356358-90356377 | MsG0380016987.01.T01:intron | 45.0% |
| AAGTTGCAGCAACTTGTGCC+AGG | - | Chr3:90355562-90355581 | MsG0380016987.01.T01:intron | 50.0% | |
| ACGTGGATATAGCCAGTTGG+GGG | + | Chr3:90355325-90355344 | None:intergenic | 50.0% | |
| ACTTGTGCCAGGCTGTGATA+AGG | - | Chr3:90355573-90355592 | MsG0380016987.01.T01:intron | 50.0% | |
| AGAGGGTGAAACTGTGAAGG+TGG | + | Chr3:90354685-90354704 | None:intergenic | 50.0% | |
| ATACCCTTTCAGCAAGGCTG+TGG | + | Chr3:90355377-90355396 | None:intergenic | 50.0% | |
| ATAGCCACAGCCTTGCTGAA+AGG | - | Chr3:90355370-90355389 | MsG0380016987.01.T01:CDS | 50.0% | |
| ATATCCACGTCCGAGCAAGA+AGG | - | Chr3:90355335-90355354 | MsG0380016987.01.T01:intron | 50.0% | |
| CCTTAGTCCACAGTCTTCCA+TGG | - | Chr3:90354792-90354811 | MsG0380016987.01.T01:three_prime_UTR | 50.0% | |
| GACGTGGATATAGCCAGTTG+GGG | + | Chr3:90355326-90355345 | None:intergenic | 50.0% | |
| GCAGCTTGGAAGATGTTGGT+TGG | + | Chr3:90356178-90356197 | None:intergenic | 50.0% | |
| GGACGTGGATATAGCCAGTT+GGG | + | Chr3:90355327-90355346 | None:intergenic | 50.0% | |
| GGCCTAGACCAACAAATGCA+TGG | + | Chr3:90356990-90357009 | None:intergenic | 50.0% | |
| GTTCTCCTCTTCTTCTCCGT+AGG | + | Chr3:90354868-90354887 | None:intergenic | 50.0% | |
| TAGCCACAGCCTTGCTGAAA+GGG | - | Chr3:90355371-90355390 | MsG0380016987.01.T01:CDS | 50.0% | |
| TATCCACGTCCGAGCAAGAA+GGG | - | Chr3:90355336-90355355 | MsG0380016987.01.T01:intron | 50.0% | |
| TCCACAGTCTTCCATGGTTC+TGG | - | Chr3:90354798-90354817 | MsG0380016987.01.T01:three_prime_UTR | 50.0% | |
| TCCAGAACCATGGAAGACTG+TGG | + | Chr3:90354802-90354821 | None:intergenic | 50.0% | |
| TGAAACTGTGAAGGTGGAGG+AGG | + | Chr3:90354679-90354698 | None:intergenic | 50.0% | |
| TGACCTACCTTATCACAGCC+TGG | + | Chr3:90355583-90355602 | None:intergenic | 50.0% | |
| ! | CCATGGAAGACTGTGGACTA+AGG | + | Chr3:90354795-90354814 | None:intergenic | 50.0% |
| ! | GGCCATGCATTTGTTGGTCT+AGG | - | Chr3:90356985-90357004 | MsG0380016987.01.T01:CDS | 50.0% |
| AACTGTGAAGGTGGAGGAGG+AGG | + | Chr3:90354676-90354695 | None:intergenic | 55.0% | |
| AGCAAGGCTGTGGCTATCAG+TGG | + | Chr3:90355367-90355386 | None:intergenic | 55.0% | |
| CGGACGTGGATATAGCCAGT+TGG | + | Chr3:90355328-90355347 | None:intergenic | 55.0% | |
| CGTGTGTGTGTGTGTGTGCA+TGG | + | Chr3:90355136-90355155 | None:intergenic | 55.0% | |
| GGGTGAAACTGTGAAGGTGG+AGG | + | Chr3:90354682-90354701 | None:intergenic | 55.0% | |
| GTGCCAGGCTGTGATAAGGT+AGG | - | Chr3:90355577-90355596 | MsG0380016987.01.T01:intron | 55.0% | |
| TGTTTGGATGAGCCCCCAAC+TGG | - | Chr3:90355310-90355329 | MsG0380016987.01.T01:intron | 55.0% | |
| ACGTCCGAGCAAGAAGGGTC+AGG | - | Chr3:90355341-90355360 | MsG0380016987.01.T01:intron | 60.0% | |
| GTGGCCTGACCCTTCTTGCT+CGG | + | Chr3:90355348-90355367 | None:intergenic | 60.0% | |
| TGACCCTTCTTGCTCGGACG+TGG | + | Chr3:90355342-90355361 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 90354517 | 90357119 | 90354517 | ID=MsG0380016987.01;Name=MsG0380016987.01 |
| Chr3 | mRNA | 90354517 | 90357119 | 90354517 | ID=MsG0380016987.01.T01;Parent=MsG0380016987.01;Name=MsG0380016987.01.T01;_AED=0.24;_eAED=0.24;_QI=81|0.2|0.66|1|0.6|0.66|6|363|303 |
| Chr3 | exon | 90354517 | 90355053 | 90354517 | ID=MsG0380016987.01.T01:exon:5792;Parent=MsG0380016987.01.T01 |
| Chr3 | exon | 90355366 | 90355559 | 90355366 | ID=MsG0380016987.01.T01:exon:5791;Parent=MsG0380016987.01.T01 |
| Chr3 | exon | 90355650 | 90355737 | 90355650 | ID=MsG0380016987.01.T01:exon:5790;Parent=MsG0380016987.01.T01 |
| Chr3 | exon | 90355835 | 90355902 | 90355835 | ID=MsG0380016987.01.T01:exon:5789;Parent=MsG0380016987.01.T01 |
| Chr3 | exon | 90356038 | 90356107 | 90356038 | ID=MsG0380016987.01.T01:exon:5788;Parent=MsG0380016987.01.T01 |
| Chr3 | exon | 90356721 | 90357119 | 90356721 | ID=MsG0380016987.01.T01:exon:5787;Parent=MsG0380016987.01.T01 |
| Chr3 | five_prime_UTR | 90357039 | 90357119 | 90357039 | ID=MsG0380016987.01.T01:five_prime_utr;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90356721 | 90357038 | 90356721 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90356038 | 90356107 | 90356038 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90355835 | 90355902 | 90355835 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90355650 | 90355737 | 90355650 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90355366 | 90355559 | 90355366 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | CDS | 90354880 | 90355053 | 90354880 | ID=MsG0380016987.01.T01:cds;Parent=MsG0380016987.01.T01 |
| Chr3 | three_prime_UTR | 90354517 | 90354879 | 90354517 | ID=MsG0380016987.01.T01:three_prime_utr;Parent=MsG0380016987.01.T01 |
| Gene Sequence |
| Protein sequence |
