AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024391.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024391.01.T01 MTR_5g010260 59.930 287 53 7 19 245 23 307 1.31e-93 286
MsG0580024391.01.T01 MTR_4g070910 56.098 287 64 7 19 245 23 307 2.99e-83 259
MsG0580024391.01.T01 MTR_5g010290 88.696 115 13 0 23 137 10 124 1.47e-71 216
MsG0580024391.01.T01 MTR_4g103790 29.897 291 128 10 29 245 34 322 3.08e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024391.01.T01 AT3G05060 50.167 299 84 8 7 245 15 308 2.05e-73 233
MsG0580024391.01.T01 AT5G27120 51.568 287 77 7 19 245 23 307 2.92e-73 232
MsG0580024391.01.T01 AT5G27140 40.336 238 81 7 67 245 42 277 2.18e-35 131
MsG0580024391.01.T01 AT5G27140 40.000 240 81 7 67 245 42 279 3.98e-35 130
MsG0580024391.01.T01 AT1G56110 29.210 291 130 10 29 245 34 322 1.90e-21 93.2
MsG0580024391.01.T01 AT3G12860 27.835 291 134 10 29 245 34 322 7.25e-20 88.6

Find 56 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGCTTCCCAGTCAAAT+TGG 0.240553 5:+4200756 None:intergenic
CAGAACGATGACGATGGATA+TGG 0.329756 5:-4202857 None:intergenic
TGAAATTGGTGAACTAGATT+TGG 0.334002 5:-4200875 MsG0580024391.01.T01:CDS
CAGCTTTGCCAGAGGAAGTT+GGG 0.337576 5:-4200936 MsG0580024391.01.T01:CDS
AGAAGCAGCTGTGATATCTA+TGG 0.339411 5:-4200902 MsG0580024391.01.T01:CDS
GAAACTGGGGAATAACATTA+AGG 0.357812 5:-4201913 MsG0580024391.01.T01:CDS
ATATCTATGGGAACTGAAAT+TGG 0.360422 5:-4200889 MsG0580024391.01.T01:CDS
ATGTGTAGCTGATGCGAAAC+TGG 0.364897 5:-4201928 MsG0580024391.01.T01:CDS
GAAGCTAGGTTCTTGATTGA+TGG 0.385766 5:-4202008 MsG0580024391.01.T01:CDS
TGATCTCGCTGTTCAAGATA+TGG 0.396026 5:-4201712 MsG0580024391.01.T01:CDS
AACGCTGCCCCAACTTCCTC+TGG 0.396694 5:+4200928 None:intergenic
GAATACATCTGCCAGGCTAT+TGG 0.397100 5:-4201421 MsG0580024391.01.T01:CDS
TACTGCAGACTCTGCAAGAA+AGG 0.420932 5:-4202200 MsG0580024391.01.T01:intron
ACCATTGCACCCAATTTGAC+TGG 0.425520 5:-4200766 MsG0580024391.01.T01:CDS
AGAACGATGACGATGGATAT+GGG 0.461439 5:-4202856 None:intergenic
GATATGGCTCCGATGAAGTT+GGG 0.468048 5:-4201696 MsG0580024391.01.T01:intron
AGATATGGCTCCGATGAAGT+TGG 0.474509 5:-4201697 MsG0580024391.01.T01:CDS
AATTTGACTGGGAAGCTTGT+TGG 0.475829 5:-4200754 MsG0580024391.01.T01:CDS
ACAAGCTTCCCAGTCAAATT+GGG 0.478660 5:+4200757 None:intergenic
CGTTGAGTAAACAACGAGTC+TGG 0.484206 5:+4201460 None:intergenic
CTCTTTCGGAATATAGAGCT+CGG 0.484469 5:-4200819 MsG0580024391.01.T01:CDS
TCAGCTTTGCCAGAGGAAGT+TGG 0.492653 5:-4200937 MsG0580024391.01.T01:intron
CCCAGTCAAATTGGGTGCAA+TGG 0.498431 5:+4200765 None:intergenic
CAGAAGCTACAGAGGAAGCT+AGG 0.507232 5:-4202022 MsG0580024391.01.T01:CDS
AATTCTTTATACAGGACTCA+TGG 0.511280 5:-4202234 MsG0580024391.01.T01:intron
AACAACGAGTCTGGCGATCA+AGG 0.512379 5:+4201469 None:intergenic
ATGGATATGGGGTTACGATT+CGG 0.515619 5:-4202844 MsG0580024391.01.T01:CDS
CGGGACAAACCCAACTTCAT+CGG 0.531237 5:+4201687 None:intergenic
CAATACACAGACCAATAGCC+TGG 0.535796 5:+4201410 None:intergenic
TTTATGATTATCTCAAGAGT+AGG 0.560116 5:-4200795 MsG0580024391.01.T01:CDS
CATTGTCACAATGAGGAAGC+AGG 0.562702 5:+4201958 None:intergenic
GAAGCAGCTGTGATATCTAT+GGG 0.568195 5:-4200901 MsG0580024391.01.T01:CDS
ATTCTTTATACAGGACTCAT+GGG 0.570456 5:-4202233 MsG0580024391.01.T01:intron
AGCTTTGCCAGAGGAAGTTG+GGG 0.571903 5:-4200935 MsG0580024391.01.T01:CDS
TTCGGAGTAGCCGATGGTGG+TGG 0.572221 5:-4202826 MsG0580024391.01.T01:CDS
TGATTATCTCAAGAGTAGGA+TGG 0.573495 5:-4200791 MsG0580024391.01.T01:CDS
AAGAGTTGAATACATCTGCC+AGG 0.573822 5:-4201428 MsG0580024391.01.T01:CDS
TGGTGACAGAACGGCGTCGA+CGG 0.580064 5:-4202806 MsG0580024391.01.T01:CDS
CCATTGCACCCAATTTGACT+GGG 0.581882 5:-4200765 MsG0580024391.01.T01:CDS
CGTTCTGTCACCACCACCAT+CGG 0.582743 5:+4202816 None:intergenic
TATTAGAGAGCTATGTGACC+AGG 0.598528 5:-4200848 MsG0580024391.01.T01:CDS
TGTGTAGCTGATGCGAAACT+GGG 0.599064 5:-4201927 MsG0580024391.01.T01:CDS
CGATGGTGGTGGTGACAGAA+CGG 0.601326 5:-4202815 MsG0580024391.01.T01:CDS
ATTGATGGAAAAGCTAGCAA+AGG 0.607482 5:-4201993 MsG0580024391.01.T01:CDS
ATTCCGAAAGAGATAAAACC+TGG 0.609367 5:+4200830 None:intergenic
CGATTCGGAGTAGCCGATGG+TGG 0.610590 5:-4202829 MsG0580024391.01.T01:CDS
GAATATATCAGAAGCTACAG+AGG 0.630088 5:-4202030 MsG0580024391.01.T01:CDS
GAACGATGACGATGGATATG+GGG 0.634123 5:-4202855 None:intergenic
TTACGATTCGGAGTAGCCGA+TGG 0.634156 5:-4202832 MsG0580024391.01.T01:CDS
TGACAGAACGGCGTCGACGG+CGG 0.655378 5:-4202803 MsG0580024391.01.T01:CDS
CTTTATACAGGACTCATGGG+AGG 0.655695 5:-4202230 MsG0580024391.01.T01:intron
AACGTCTCATTGTCACAATG+AGG 0.656598 5:+4201951 None:intergenic
ACATATTTCAGCTTTGCCAG+AGG 0.686680 5:-4200944 MsG0580024391.01.T01:intron
GCTGTTATGGAGCTAATGCG+AGG 0.708635 5:-4201765 MsG0580024391.01.T01:CDS
AGTCAAGTTCGTGAGCAGCG+AGG 0.738868 5:+4200725 None:intergenic
GTGTAGCTGATGCGAAACTG+GGG 0.746718 5:-4201926 MsG0580024391.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAAAAAAAATGTC+AGG + Chr5:4202055-4202074 None:intergenic 10.0%
!!! TGACATTTTTTTTAATTATT+AGG - Chr5:4202054-4202073 MsG0580024391.01.T01:CDS 10.0%
!! ATTATACAAATTCTTTATAC+AGG - Chr5:4201310-4201329 MsG0580024391.01.T01:intron 15.0%
!!! CATTTTTTTTAATTATTAGG+CGG - Chr5:4202057-4202076 MsG0580024391.01.T01:CDS 15.0%
!!! CCTAATAAAAAATCATTTTA+AGG + Chr5:4202222-4202241 None:intergenic 15.0%
!!! CCTTAAAATGATTTTTTATT+AGG - Chr5:4202219-4202238 MsG0580024391.01.T01:CDS 15.0%
!! AATAACATTAAGGAAAAACT+GGG - Chr5:4201649-4201668 MsG0580024391.01.T01:intron 20.0%
!! ACACGATAACATATATAATA+AGG - Chr5:4201050-4201069 MsG0580024391.01.T01:intron 20.0%
!!! AAACAAAGCATCAAAATAAA+TGG + Chr5:4201123-4201142 None:intergenic 20.0%
!!! TAAAAAATCATTTTAAGGTC+AGG + Chr5:4202217-4202236 None:intergenic 20.0%
!!! TCTTTTTTTTTTTTTGTTGC+CGG - Chr5:4201997-4202016 MsG0580024391.01.T01:CDS 20.0%
! ACCTAACATATTTGAAAACA+CGG - Chr5:4202499-4202518 MsG0580024391.01.T01:intron 25.0%
! AGGATAATATTCATATGCAA+GGG - Chr5:4202360-4202379 MsG0580024391.01.T01:intron 25.0%
! GAATAACATTAAGGAAAAAC+TGG - Chr5:4201648-4201667 MsG0580024391.01.T01:intron 25.0%
! TTCATCCAACAATTTGAAAA+GGG + Chr5:4201204-4201223 None:intergenic 25.0%
! TTTATGATTATCTCAAGAGT+AGG - Chr5:4202757-4202776 MsG0580024391.01.T01:intron 25.0%
!! AGCTTTAGTGTAAAACAAAT+CGG + Chr5:4202466-4202485 None:intergenic 25.0%
AACTTGTATATGATAGGCTA+CGG + Chr5:4201888-4201907 None:intergenic 30.0%
AATGTCATCACAAGTTACTA+AGG + Chr5:4201697-4201716 None:intergenic 30.0%
AATTCTTTATACAGGACTCA+TGG - Chr5:4201318-4201337 MsG0580024391.01.T01:intron 30.0%
ACAAGTTATGCATAATTAGG+TGG - Chr5:4201471-4201490 MsG0580024391.01.T01:CDS 30.0%
AGACGCATATAAACAGATTA+AGG + Chr5:4201410-4201429 None:intergenic 30.0%
AGTAAAGCTTTCTCAATTTC+AGG - Chr5:4201223-4201242 MsG0580024391.01.T01:intron 30.0%
ATATCTATGGGAACTGAAAT+TGG - Chr5:4202663-4202682 MsG0580024391.01.T01:intron 30.0%
ATGTCATCACAAGTTACTAA+GGG + Chr5:4201696-4201715 None:intergenic 30.0%
ATTCTTTATACAGGACTCAT+GGG - Chr5:4201319-4201338 MsG0580024391.01.T01:intron 30.0%
CACACAAGTTATGCATAATT+AGG - Chr5:4201468-4201487 MsG0580024391.01.T01:CDS 30.0%
CAGGATAATATTCATATGCA+AGG - Chr5:4202359-4202378 MsG0580024391.01.T01:intron 30.0%
CATCAAATAGCTAACTTTGT+CGG - Chr5:4201729-4201748 MsG0580024391.01.T01:CDS 30.0%
CTATTTGTGGGTTTCAAATA+TGG + Chr5:4200963-4200982 None:intergenic 30.0%
CTTCATCCAACAATTTGAAA+AGG + Chr5:4201205-4201224 None:intergenic 30.0%
CTTTAGTGTAAAACAAATCG+GGG + Chr5:4202464-4202483 None:intergenic 30.0%
GACGCATATAAACAGATTAA+GGG + Chr5:4201409-4201428 None:intergenic 30.0%
GCTTTAGTGTAAAACAAATC+GGG + Chr5:4202465-4202484 None:intergenic 30.0%
TGAAATTGGTGAACTAGATT+TGG - Chr5:4202677-4202696 MsG0580024391.01.T01:intron 30.0%
TGCTTCAACTTGTATATGAT+AGG + Chr5:4201894-4201913 None:intergenic 30.0%
! ACCGTGTTTTCAAATATGTT+AGG + Chr5:4202503-4202522 None:intergenic 30.0%
! TACAAAGGGTGTATAGAAAA+GGG - Chr5:4200920-4200939 MsG0580024391.01.T01:CDS 30.0%
! TCTCTGATCGTTTTACTTAT+TGG - Chr5:4201092-4201111 MsG0580024391.01.T01:intron 30.0%
! TTTTCACAACAATGCTGTTA+TGG - Chr5:4201774-4201793 MsG0580024391.01.T01:CDS 30.0%
! TTTTGCCCTTTTCAAATTGT+TGG - Chr5:4201196-4201215 MsG0580024391.01.T01:intron 30.0%
!! TTTGTATAAAGAAGCATCAC+AGG + Chr5:4202534-4202553 None:intergenic 30.0%
!!! ATTTTGATGCTTTGTTTTCC+AGG - Chr5:4201126-4201145 MsG0580024391.01.T01:intron 30.0%
ACTTGTATATGATAGGCTAC+GGG + Chr5:4201887-4201906 None:intergenic 35.0%
AGTTGAATGCATATGCATGA+GGG - Chr5:4202292-4202311 MsG0580024391.01.T01:intron 35.0%
ATTCCGAAAGAGATAAAACC+TGG + Chr5:4202725-4202744 None:intergenic 35.0%
ATTGATGGAAAAGCTAGCAA+AGG - Chr5:4201559-4201578 MsG0580024391.01.T01:intron 35.0%
GAAACTGGGGAATAACATTA+AGG - Chr5:4201639-4201658 MsG0580024391.01.T01:intron 35.0%
GAATATATCAGAAGCTACAG+AGG - Chr5:4201522-4201541 MsG0580024391.01.T01:intron 35.0%
GTCAGGAAAAAGTTGTTATC+CGG + Chr5:4202038-4202057 None:intergenic 35.0%
TCGAAGCTTCTTTCTTTAGT+GGG + Chr5:4200992-4201011 None:intergenic 35.0%
TGAATGATTTCGCTAAGATC+AGG + Chr5:4202341-4202360 None:intergenic 35.0%
TGATCTTAGCGAAATCATTC+AGG - Chr5:4202340-4202359 MsG0580024391.01.T01:intron 35.0%
TGATTATCTCAAGAGTAGGA+TGG - Chr5:4202761-4202780 MsG0580024391.01.T01:intron 35.0%
TTGGGAATTTCACGCAATAT+GGG + Chr5:4200875-4200894 None:intergenic 35.0%
TTTGGGAATTTCACGCAATA+TGG + Chr5:4200876-4200895 None:intergenic 35.0%
! AGATTAAGGGAAGTATGAGT+GGG + Chr5:4201396-4201415 None:intergenic 35.0%
! AGTGGGTTTACACTATTTGT+GGG + Chr5:4200975-4200994 None:intergenic 35.0%
! GTACAAAGGGTGTATAGAAA+AGG - Chr5:4200919-4200938 MsG0580024391.01.T01:CDS 35.0%
! GTATTATTTGAAACTCCAGC+AGG - Chr5:4201173-4201192 MsG0580024391.01.T01:intron 35.0%
!! ATCCGAGAATCAAAAGTATC+AGG + Chr5:4202183-4202202 None:intergenic 35.0%
!! TAGTGGGTTTACACTATTTG+TGG + Chr5:4200976-4200995 None:intergenic 35.0%
!! TGACCAGGTTTTATCTCTTT+CGG - Chr5:4202719-4202738 MsG0580024391.01.T01:intron 35.0%
!! TGCCTGATACTTTTGATTCT+CGG - Chr5:4202178-4202197 MsG0580024391.01.T01:intron 35.0%
AACAAGCTTCCCAGTCAAAT+TGG + Chr5:4202799-4202818 None:intergenic 40.0%
AACGTCTCATTGTCACAATG+AGG + Chr5:4201604-4201623 None:intergenic 40.0%
AAGAAAGAAGCTTCGACTTC+TGG - Chr5:4200996-4201015 MsG0580024391.01.T01:intron 40.0%
AAGAGTTGAATACATCTGCC+AGG - Chr5:4202124-4202143 MsG0580024391.01.T01:intron 40.0%
AATTTGACTGGGAAGCTTGT+TGG - Chr5:4202798-4202817 MsG0580024391.01.T01:intron 40.0%
ACAAGCTTCCCAGTCAAATT+GGG + Chr5:4202798-4202817 None:intergenic 40.0%
ACAAGTTACTAAGGGACACT+TGG + Chr5:4201688-4201707 None:intergenic 40.0%
ACATATTTCAGCTTTGCCAG+AGG - Chr5:4202608-4202627 MsG0580024391.01.T01:intron 40.0%
AGAAGCAGCTGTGATATCTA+TGG - Chr5:4202650-4202669 MsG0580024391.01.T01:intron 40.0%
ATGGATATGGGGTTACGATT+CGG - Chr5:4200708-4200727 MsG0580024391.01.T01:CDS 40.0%
CAAGTTACTAAGGGACACTT+GGG + Chr5:4201687-4201706 None:intergenic 40.0%
CATTAAGGAAAAACTGGGAC+CGG - Chr5:4201654-4201673 MsG0580024391.01.T01:intron 40.0%
CTCTTTCGGAATATAGAGCT+CGG - Chr5:4202733-4202752 MsG0580024391.01.T01:intron 40.0%
GAAGCAGCTGTGATATCTAT+GGG - Chr5:4202651-4202670 MsG0580024391.01.T01:intron 40.0%
GAAGCTAGGTTCTTGATTGA+TGG - Chr5:4201544-4201563 MsG0580024391.01.T01:intron 40.0%
GAGTTGAATGCATATGCATG+AGG - Chr5:4202291-4202310 MsG0580024391.01.T01:intron 40.0%
GGCAAAGCTGAAATATGTTC+AGG + Chr5:4202606-4202625 None:intergenic 40.0%
GTCGAAGCTTCTTTCTTTAG+TGG + Chr5:4200993-4201012 None:intergenic 40.0%
TATTAGAGAGCTATGTGACC+AGG - Chr5:4202704-4202723 MsG0580024391.01.T01:intron 40.0%
TGATCTCGCTGTTCAAGATA+TGG - Chr5:4201840-4201859 MsG0580024391.01.T01:intron 40.0%
TTCACGCAATATGGGTAGTT+TGG + Chr5:4200867-4200886 None:intergenic 40.0%
! CAGATTAAGGGAAGTATGAG+TGG + Chr5:4201397-4201416 None:intergenic 40.0%
!! CCGGAGAATCAAAAAGTATC+CGG + Chr5:4202019-4202038 None:intergenic 40.0%
!! CCGGATACTTTTTGATTCTC+CGG - Chr5:4202016-4202035 MsG0580024391.01.T01:CDS 40.0%
!!! GCTTTGTTTTCCAGGTTTGT+TGG - Chr5:4201134-4201153 MsG0580024391.01.T01:intron 40.0%
!!! TGTCACTTTTCCAACAAACC+TGG + Chr5:4201147-4201166 None:intergenic 40.0%
ACCATTGCACCCAATTTGAC+TGG - Chr5:4202786-4202805 MsG0580024391.01.T01:intron 45.0%
AGATATGGCTCCGATGAAGT+TGG - Chr5:4201855-4201874 MsG0580024391.01.T01:intron 45.0%
ATATGTTATCGTGTGCCGCA+CGG + Chr5:4201044-4201063 None:intergenic 45.0%
ATGTGTAGCTGATGCGAAAC+TGG - Chr5:4201624-4201643 MsG0580024391.01.T01:intron 45.0%
CAATACACAGACCAATAGCC+TGG + Chr5:4202145-4202164 None:intergenic 45.0%
CACATCAGCAGTGGTACAAA+GGG - Chr5:4200906-4200925 MsG0580024391.01.T01:CDS 45.0%
CATTGTCACAATGAGGAAGC+AGG + Chr5:4201597-4201616 None:intergenic 45.0%
CCATTGCACCCAATTTGACT+GGG - Chr5:4202787-4202806 MsG0580024391.01.T01:intron 45.0%
CGTCAAGTAAACCAATAGCC+TGG + Chr5:4202260-4202279 None:intergenic 45.0%
CGTTGAGTAAACAACGAGTC+TGG + Chr5:4202095-4202114 None:intergenic 45.0%
CTTTATACAGGACTCATGGG+AGG - Chr5:4201322-4201341 MsG0580024391.01.T01:intron 45.0%
GAATACATCTGCCAGGCTAT+TGG - Chr5:4202131-4202150 MsG0580024391.01.T01:intron 45.0%
GAGGAAGAGAGAAGATTGTG+TGG - Chr5:4200826-4200845 MsG0580024391.01.T01:CDS 45.0%
GATATGGCTCCGATGAAGTT+GGG - Chr5:4201856-4201875 MsG0580024391.01.T01:intron 45.0%
GTTGAAGCATAGTGCAGACT+AGG - Chr5:4201905-4201924 MsG0580024391.01.T01:CDS 45.0%
TACTGCAGACTCTGCAAGAA+AGG - Chr5:4201352-4201371 MsG0580024391.01.T01:intron 45.0%
TGCATGAGGGTTCGAGAATA+TGG - Chr5:4202305-4202324 MsG0580024391.01.T01:intron 45.0%
TGTGTAGCTGATGCGAAACT+GGG - Chr5:4201625-4201644 MsG0580024391.01.T01:intron 45.0%
TTGAAAAGGGCAAAACCTGC+TGG + Chr5:4201191-4201210 None:intergenic 45.0%
!! TCTCTCTTGTTTCTACCGTG+CGG - Chr5:4201026-4201045 MsG0580024391.01.T01:intron 45.0%
AACAACGAGTCTGGCGATCA+AGG + Chr5:4202086-4202105 None:intergenic 50.0%
AGCTTTGCCAGAGGAAGTTG+GGG - Chr5:4202617-4202636 MsG0580024391.01.T01:intron 50.0%
CAGAAGCTACAGAGGAAGCT+AGG - Chr5:4201530-4201549 MsG0580024391.01.T01:intron 50.0%
CAGCTTTGCCAGAGGAAGTT+GGG - Chr5:4202616-4202635 MsG0580024391.01.T01:intron 50.0%
CCACATCAGCAGTGGTACAA+AGG - Chr5:4200905-4200924 MsG0580024391.01.T01:CDS 50.0%
CCCAGTCAAATTGGGTGCAA+TGG + Chr5:4202790-4202809 None:intergenic 50.0%
CCTTTGTACCACTGCTGATG+TGG + Chr5:4200908-4200927 None:intergenic 50.0%
CGATCTGGTGAACAGAGAAG+AGG - Chr5:4200807-4200826 MsG0580024391.01.T01:CDS 50.0%
CGGGACAAACCCAACTTCAT+CGG + Chr5:4201868-4201887 None:intergenic 50.0%
GAGAGAGGAGGAAGATGAGA+AGG - Chr5:4200783-4200802 MsG0580024391.01.T01:CDS 50.0%
GCTGTTATGGAGCTAATGCG+AGG - Chr5:4201787-4201806 MsG0580024391.01.T01:CDS 50.0%
GGAAGATGAGAAGGTCGATC+TGG - Chr5:4200792-4200811 MsG0580024391.01.T01:CDS 50.0%
GTGTAGCTGATGCGAAACTG+GGG - Chr5:4201626-4201645 MsG0580024391.01.T01:intron 50.0%
TCAGCTTTGCCAGAGGAAGT+TGG - Chr5:4202615-4202634 MsG0580024391.01.T01:intron 50.0%
TCTCATCTTCCTCCTCTCTC+TGG + Chr5:4200783-4200802 None:intergenic 50.0%
TGAGGGTTCGAGAATATGGC+TGG - Chr5:4202309-4202328 MsG0580024391.01.T01:intron 50.0%
TGATGTGGCAGGGGTAGTTT+GGG + Chr5:4200893-4200912 None:intergenic 50.0%
TGCAGAGCTCGATTTCTCTG+AGG - Chr5:4202414-4202433 MsG0580024391.01.T01:intron 50.0%
! TTACGATTCGGAGTAGCCGA+TGG - Chr5:4200720-4200739 MsG0580024391.01.T01:CDS 50.0%
ACCAATAGCCTGGACGAGCA+AGG + Chr5:4202250-4202269 None:intergenic 55.0%
ACCTTGCTCGTCCAGGCTAT+TGG - Chr5:4202246-4202265 MsG0580024391.01.T01:intron 55.0%
AGTCAAGTTCGTGAGCAGCG+AGG + Chr5:4202830-4202849 None:intergenic 55.0%
CGTTCTGTCACCACCACCAT+CGG + Chr5:4200739-4200758 None:intergenic 55.0%
CTGATGTGGCAGGGGTAGTT+TGG + Chr5:4200894-4200913 None:intergenic 55.0%
GTACCACTGCTGATGTGGCA+GGG + Chr5:4200903-4200922 None:intergenic 55.0%
TACCACTGCTGATGTGGCAG+GGG + Chr5:4200902-4200921 None:intergenic 55.0%
TGCAAGGGCAGTCAAGCTGA+TGG - Chr5:4202375-4202394 MsG0580024391.01.T01:intron 55.0%
TGTACCACTGCTGATGTGGC+AGG + Chr5:4200904-4200923 None:intergenic 55.0%
!! CGATGGTGGTGGTGACAGAA+CGG - Chr5:4200737-4200756 MsG0580024391.01.T01:CDS 55.0%
AACGCTGCCCCAACTTCCTC+TGG + Chr5:4202627-4202646 None:intergenic 60.0%
AGGTGACACCTTGCTCGTCC+AGG - Chr5:4202239-4202258 MsG0580024391.01.T01:intron 60.0%
GCAGTGAGACCAGAGAGAGG+AGG - Chr5:4200771-4200790 MsG0580024391.01.T01:CDS 60.0%
TACCCCTGCCACATCAGCAG+TGG - Chr5:4200897-4200916 MsG0580024391.01.T01:CDS 60.0%
! CGATTCGGAGTAGCCGATGG+TGG - Chr5:4200723-4200742 MsG0580024391.01.T01:CDS 60.0%
! TGGTGACAGAACGGCGTCGA+CGG - Chr5:4200746-4200765 MsG0580024391.01.T01:CDS 60.0%
! TTCGGAGTAGCCGATGGTGG+TGG - Chr5:4200726-4200745 MsG0580024391.01.T01:CDS 60.0%
GCGGCAGTGAGACCAGAGAG+AGG - Chr5:4200768-4200787 MsG0580024391.01.T01:CDS 65.0%
GGGACACTTGGGCAGCACAC+CGG + Chr5:4201676-4201695 None:intergenic 65.0%
!! TGACAGAACGGCGTCGACGG+CGG - Chr5:4200749-4200768 MsG0580024391.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 4200708 4202866 4200708 ID=MsG0580024391.01;Name=MsG0580024391.01
Chr5 mRNA 4200708 4202866 4200708 ID=MsG0580024391.01.T01;Parent=MsG0580024391.01;Name=MsG0580024391.01.T01;_AED=0.49;_eAED=0.60;_QI=0|0|0|1|1|1|6|0|245
Chr5 exon 4202801 4202866 4202801 ID=MsG0580024391.01.T01:exon:2294;Parent=MsG0580024391.01.T01
Chr5 exon 4202201 4202242 4202201 ID=MsG0580024391.01.T01:exon:2293;Parent=MsG0580024391.01.T01
Chr5 exon 4201899 4202084 4201899 ID=MsG0580024391.01.T01:exon:2292;Parent=MsG0580024391.01.T01
Chr5 exon 4201697 4201811 4201697 ID=MsG0580024391.01.T01:exon:2291;Parent=MsG0580024391.01.T01
Chr5 exon 4201418 4201498 4201418 ID=MsG0580024391.01.T01:exon:2290;Parent=MsG0580024391.01.T01
Chr5 exon 4200708 4200955 4200708 ID=MsG0580024391.01.T01:exon:2289;Parent=MsG0580024391.01.T01
Chr5 CDS 4202801 4202866 4202801 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Chr5 CDS 4202201 4202242 4202201 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Chr5 CDS 4201899 4202084 4201899 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Chr5 CDS 4201697 4201811 4201697 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Chr5 CDS 4201418 4201498 4201418 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Chr5 CDS 4200708 4200955 4200708 ID=MsG0580024391.01.T01:cds;Parent=MsG0580024391.01.T01
Gene Sequence

>MsG0580024391.01.T01

ATGGATATGGGGTTACGATTCGGAGTAGCCGATGGTGGTGGTGACAGAACGGCGTCGACGGCGGCAGACTCATGGGAGGACTTTTCTACTGCAGACTCTGCAAGAAAGGTGGTCAAATTGATAGCTTTCTCTAAGTTTGAGAATATATCAGAAGCTACAGAGGAAGCTAGGTTCTTGATTGATGGAAAAGCTAGCAAAGGTCTGCGCAAGTTCCTGCTTCCTCATTGTGACAATGAGACGTTATGTGTAGCTGATGCGAAACTGGGGAATAACATTAAGGAAAAACTGGGACCGAAAATCAAATGTTTTCACAACAATGCTGTTATGGAGCTAATGCGAGGTATTCAATATCAGTTGAGAGAACTTGTAACTGATCTCGCTGTTCAAGATATGGCTCCGATGAAGTTGGGCGGACACCTTGATCGCCAGACTCGTTGTTTACTCAACGATCTTGATGAAGAGTTGAATACATCTGCCAGGCTATTGGTCTCTTTGCCAGAGGAAGTTGGGGCAGCGTTGCAAGAAGCAGCTGTGATATCTATGGGAACTGAAATTGGTGAACTAGATTTGGCAGATATTAGAGAGCTATGTGACCAGGTTTTATCTCTTTCGGAATATAGAGCTCGGCTTTATGATTATCTCAAGAGTAGGATGGACACCATTGCACCCAATTTGACTGGGAAGCTTGTTGGTGCTCGCCTCGCTGCTCACGAACTTGACTTGTTAAATCTTGCATAG
Protein sequence

>MsG0580024391.01.T01

MDMGLRFGVADGGGDRTASTAADSWEDFSTADSARKVVKLIAFSKFENISEATEEARFLIDGKASKGLRKFLLPHCDNETLCVADAKLGNNIKEKLGPKIKCFHNNAVMELMRGIQYQLRELVTDLAVQDMAPMKLGGHLDRQTRCLLNDLDEELNTSARLLVSLPEEVGAALQEAAVISMGTEIGELDLADIRELCDQVLSLSEYRARLYDYLKSRMDTIAPNLTGKLVGARLAAHELDLLNLA*