AlfalfaGEDB | MsG0380017543.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017543.01

KEGG: K11507
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017543.01.T01	KEH35954.1	73.62	163	23	3	1	144	1	162	9.55E-71	227

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017543.01.T01	A0A072V1R6	73.620	163	23	3	1	144	1	162	4.56e-71	227

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0380017543.01	0.839773	1.296805e-57	1.809316e-54
MsG0080047944.01	MsG0380017543.01	0.871070	9.043964e-67	3.599876e-63
MsG0080047957.01	MsG0380017543.01	0.850481	1.651686e-60	3.239712e-57
MsG0080047959.01	MsG0380017543.01	0.853982	1.666366e-61	3.666451e-58
MsG0080048073.01	MsG0380017543.01	0.821628	3.649154e-53	2.984541e-50
MsG0080048461.01	MsG0380017543.01	0.823402	1.412482e-53	1.214812e-50
MsG0080048462.01	MsG0380017543.01	0.832199	1.083387e-55	1.202326e-52
MsG0080048463.01	MsG0380017543.01	0.834058	3.733175e-56	4.379853e-53
MsG0080048464.01	MsG0380017543.01	0.821336	4.262536e-53	3.458038e-50
MsG0080048618.01	MsG0380017543.01	0.818610	1.791341e-52	1.347206e-49

Showing 1 to 10 of 680 entries

Previous1 2 3 4 5…68Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017543.01.T01	MTR_3g108805	73.620	163	23	3	1	144	1	162	1.16e-74	227
MsG0380017543.01.T01	MTR_3g108805	77.124	153	16	2	1	134	1	153	7.82e-74	227
MsG0380017543.01.T01	MTR_3g108805	95.588	68	3	0	138	205	274	341	6.56e-40	140

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017543.01.T01	AT5G10710	45.378	119	51	3	40	144	9	127	7.08e-23	92.8
MsG0380017543.01.T01	AT5G10710	45.378	119	51	3	40	144	9	127	9.68e-23	94.0

Showing 1 to 2 of 2 entries

Previous1Next

Find 40 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGATCTGTGTATCGA+AGG	0.604667	3:+97676941	None:intergenic
AAGAAGGACCTTGTTGCGAG+AGG	0.504451	3:+97681650	None:intergenic
AAGAATAACTGAGTAAAGTT+TGG	0.352030	3:-97681765	MsG0380017543.01.T01:five_prime_UTR
AATTAACAGGGATTCTGACA+AGG	0.606528	3:-97681132	MsG0380017543.01.T01:intron
ACTTGCTACAATAAGAGAGC+AGG	0.563333	3:-97680423	MsG0380017543.01.T01:intron
ACTTGGCTGACCGTATTTCT+AGG	0.263651	3:-97681224	MsG0380017543.01.T01:intron
AGAAGGACCTTGTTGCGAGA+GGG	0.563487	3:+97681651	None:intergenic
AGGTGAAAACTATATTACTT+CGG	0.595714	3:-97676758	MsG0380017543.01.T01:CDS
ATCTTGTCAGGTGCATATGG+AGG	0.639737	3:-97680269	MsG0380017543.01.T01:intron
ATGATGGAAGATGGAATCTC+AGG	0.459261	3:-97676847	MsG0380017543.01.T01:CDS

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACACTATCTACTGATAAGT+CGG	-	Chr3:97680919-97680938	MsG0380017543.01.T01:intron	30.0%
AAGATATAATCGTCAGCAAA+TGG	+	Chr3:97680305-97680324	None:intergenic	30.0%
AATGAATGAACAGTAGAAGT+TGG	+	Chr3:97678070-97678089	None:intergenic	30.0%
AATGCAAACCAATAGAAACA+AGG	+	Chr3:97680538-97680557	None:intergenic	30.0%
ACATACAAATCATAGCTTGA+AGG	-	Chr3:97679460-97679479	MsG0380017543.01.T01:intron	30.0%
ACATACAAATTCCACTAAGT+AGG	-	Chr3:97679391-97679410	MsG0380017543.01.T01:intron	30.0%
ATTATTTCCTTAACACTGCT+TGG	+	Chr3:97679689-97679708	None:intergenic	30.0%
ATTGAGAATGTGAAAAGAGT+AGG	-	Chr3:97678657-97678676	MsG0380017543.01.T01:intron	30.0%
CAGAAATTCATTGATCATGT+TGG	-	Chr3:97680558-97680577	MsG0380017543.01.T01:intron	30.0%
CAGACTTATAAAGGACTTTA+TGG	-	Chr3:97681318-97681337	MsG0380017543.01.T01:intron	30.0%

Showing 1 to 10 of 327 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	97676747	97681872	97676747	ID=MsG0380017543.01;Name=MsG0380017543.01
Chr3	mRNA	97676747	97681872	97676747	ID=MsG0380017543.01.T01;Parent=MsG0380017543.01;Name=MsG0380017543.01.T01;_AED=0.50;_eAED=0.52;_QI=115\|0.5\|0.71\|1\|1\|1\|7\|0\|214
Chr3	exon	97676747	97676978	97676747	ID=MsG0380017543.01.T01:exon:21345;Parent=MsG0380017543.01.T01
Chr3	exon	97680190	97680281	97680190	ID=MsG0380017543.01.T01:exon:21344;Parent=MsG0380017543.01.T01
Chr3	exon	97680424	97680470	97680424	ID=MsG0380017543.01.T01:exon:21343;Parent=MsG0380017543.01.T01
Chr3	exon	97681075	97681145	97681075	ID=MsG0380017543.01.T01:exon:21342;Parent=MsG0380017543.01.T01
Chr3	exon	97681225	97681273	97681225	ID=MsG0380017543.01.T01:exon:21341;Parent=MsG0380017543.01.T01
Chr3	exon	97681366	97681420	97681366	ID=MsG0380017543.01.T01:exon:21340;Parent=MsG0380017543.01.T01
Chr3	exon	97681659	97681872	97681659	ID=MsG0380017543.01.T01:exon:21339;Parent=MsG0380017543.01.T01
Chr3	five_prime_UTR	97681758	97681872	97681758	ID=MsG0380017543.01.T01:five_prime_utr;Parent=MsG0380017543.01.T01
Chr3	CDS	97681659	97681757	97681659	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97681366	97681420	97681366	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97681225	97681273	97681225	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97681075	97681145	97681075	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97680424	97680470	97680424	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97680190	97680281	97680190	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01
Chr3	CDS	97676747	97676978	97676747	ID=MsG0380017543.01.T01:cds;Parent=MsG0380017543.01.T01

Gene Sequence

>MsG0380017543.01.T01

ATGCGATTCGTTGAAACGGAGAGCGATGCGGAAGAATCTATGCGAAAGAGACTCCGAAGTAATTCCTTTCACTCCGCCGATTATCCCTCTCGCAACAAGAATTTTATGCAGCAGCAAGATGATGATAGTCGCTTGGATATTACACGAGCTAAATTTGGAAGTTTGCTTAAAAGACATGAAAACTTGGCTGACCGTATTTCTAGGGATTCTGACAAGGTAATATTTGAGCGTCTACTCAAGAGTTTGAATCTGCACGAGCTTCTCAAAACACAAGATGGGGAACAGTGGAATGATGGTCTACTTGCTACAATAAGAGAGCAGGTGCATATGGAGGCAGAGAGAAAAGCATTGTCTAAAGATGCTGACGTATTAACAAGCCATCAGGAAAAAGTACATATAAAACTGGAAACAAGCAAAGTGACAGTCAGCCTTCGATACACAGATCTCATTTCGGTGCTTCCAACTCGAATCTCAGTGCTAGCCTGGCCAATGTCGAAGATAAATTCTACTCCAATTTTCAACATGATGGAAGATGGAATCTCAGGAAGTCATCCTGCACCAGTTCGACTATCCTACGCAGAAGACGCCTTACGAACCATGAGTCTACCAGAAGGTGAAAACTATATTACTTCGGTTAAATTATAA

Protein sequence

>MsG0380017543.01.T01

MRFVETESDAEESMRKRLRSNSFHSADYPSRNKNFMQQQDDDSRLDITRAKFGSLLKRHENLADRISRDSDKVIFERLLKSLNLHELLKTQDGEQWNDGLLATIREQVHMEAERKALSKDADVLTSHQEKVHIKLETSKVTVSLRYTDLISVLPTRISVLAWPMSKINSTPIFNMMEDGISGSHPAPVRLSYAEDALRTMSLPEGENYITSVKL*