Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024497.01.T01 | XP_003611279.1 | 100 | 197 | 0 | 0 | 1 | 197 | 94 | 290 | 2.03E-140 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024497.01.T01 | G7JW04 | 100.000 | 197 | 0 | 0 | 1 | 197 | 94 | 290 | 9.71e-141 | 403 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003403.01 | MsG0580024497.01 | 0.801678 | 8.041289e-49 | 3.863415e-46 |
| MsG0180003741.01 | MsG0580024497.01 | 0.812911 | 3.340632e-51 | 2.150615e-48 |
| MsG0180004481.01 | MsG0580024497.01 | 0.815508 | 8.918945e-52 | 6.161190e-49 |
| MsG0180004482.01 | MsG0580024497.01 | 0.811860 | 5.667809e-51 | 3.547697e-48 |
| MsG0180005153.01 | MsG0580024497.01 | 0.809824 | 1.563463e-50 | 9.273988e-48 |
| MsG0280010778.01 | MsG0580024497.01 | 0.806454 | 8.164142e-50 | 4.433173e-47 |
| MsG0380011496.01 | MsG0580024497.01 | 0.800509 | 1.394070e-48 | 6.502783e-46 |
| MsG0380011501.01 | MsG0580024497.01 | 0.805264 | 1.451444e-49 | 7.644432e-47 |
| MsG0580024197.01 | MsG0580024497.01 | 0.812583 | 3.941504e-51 | 2.515696e-48 |
| MsG0580024497.01 | MsG0580027925.01 | 0.816676 | 4.891414e-52 | 3.488503e-49 |
| MsG0580024497.01 | MsG0680031621.01 | 0.819408 | 1.179686e-52 | 9.070368e-50 |
| MsG0580024497.01 | MsG0680034853.01 | 0.811087 | 8.344351e-51 | 5.117635e-48 |
| MsG0580024497.01 | MsG0880045145.01 | 0.805866 | 1.085243e-49 | 5.805269e-47 |
| MsG0580024497.01 | MsG0880047472.01 | 0.813431 | 2.568835e-51 | 1.677252e-48 |
| MsG0280006592.01 | MsG0580024497.01 | 0.801356 | 9.358088e-49 | 4.459952e-46 |
| MsG0280007955.01 | MsG0580024497.01 | 0.817754 | 2.798223e-52 | 2.055626e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024497.01.T01 | MTR_5g012220 | 100.000 | 197 | 0 | 0 | 1 | 197 | 94 | 290 | 2.46e-144 | 403 |
| MsG0580024497.01.T01 | MTR_4g101450 | 76.757 | 185 | 34 | 4 | 15 | 197 | 98 | 275 | 1.08e-93 | 274 |
| MsG0580024497.01.T01 | MTR_1g024980 | 40.580 | 207 | 99 | 7 | 12 | 197 | 198 | 401 | 2.95e-38 | 136 |
| MsG0580024497.01.T01 | MTR_3g072920 | 37.156 | 218 | 97 | 8 | 12 | 196 | 240 | 450 | 3.27e-34 | 126 |
| MsG0580024497.01.T01 | MTR_4g081420 | 37.736 | 212 | 103 | 7 | 12 | 196 | 227 | 436 | 5.53e-32 | 120 |
| MsG0580024497.01.T01 | MTR_3g463270 | 38.426 | 216 | 97 | 7 | 12 | 195 | 176 | 387 | 9.69e-32 | 118 |
| MsG0580024497.01.T01 | MTR_2g010860 | 31.111 | 225 | 99 | 8 | 12 | 196 | 168 | 376 | 2.02e-22 | 93.2 |
| MsG0580024497.01.T01 | MTR_2g010870 | 34.685 | 222 | 104 | 9 | 12 | 196 | 138 | 355 | 1.45e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024497.01.T01 | AT1G62520 | 68.367 | 196 | 56 | 3 | 3 | 197 | 90 | 280 | 1.03e-84 | 252 |
| MsG0580024497.01.T01 | AT4G22560 | 63.684 | 190 | 50 | 6 | 11 | 197 | 91 | 264 | 4.59e-71 | 216 |
| MsG0580024497.01.T01 | AT4G12450 | 59.794 | 194 | 56 | 4 | 13 | 197 | 97 | 277 | 1.24e-67 | 208 |
| MsG0580024497.01.T01 | AT4G27240 | 40.566 | 212 | 98 | 6 | 12 | 196 | 220 | 430 | 1.22e-32 | 121 |
| MsG0580024497.01.T01 | AT5G54630 | 38.073 | 218 | 101 | 6 | 12 | 196 | 255 | 471 | 3.47e-32 | 121 |
| MsG0580024497.01.T01 | AT1G75710 | 34.454 | 238 | 98 | 10 | 12 | 197 | 228 | 459 | 4.22e-30 | 115 |
| MsG0580024497.01.T01 | AT2G29660 | 37.004 | 227 | 95 | 8 | 12 | 195 | 150 | 371 | 3.84e-29 | 111 |
| MsG0580024497.01.T01 | AT4G27240 | 38.071 | 197 | 76 | 5 | 12 | 175 | 220 | 403 | 9.85e-26 | 103 |
Find 86 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAATGAGGTTTCATTGTT+TGG | 0.276715 | 5:-5588498 | MsG0580024497.01.T01:CDS |
| GCTTGTGTGGGGTCGTTTCC+AGG | 0.316873 | 5:-5588443 | MsG0580024497.01.T01:CDS |
| CATTGTTTGGGACCCACTTC+CGG | 0.322414 | 5:-5588485 | MsG0580024497.01.T01:CDS |
| CTCCTCATGGTTCCTCGACC+CGG | 0.345814 | 5:+5588550 | None:intergenic |
| GTAATGAGGTTTCATTGTTT+GGG | 0.354649 | 5:-5588497 | MsG0580024497.01.T01:CDS |
| AGGGTTTGTGGATTCATTGT+TGG | 0.360028 | 5:-5588291 | MsG0580024497.01.T01:CDS |
| TTCGAAGCGGGTAGGGTTTG+TGG | 0.380582 | 5:-5588303 | MsG0580024497.01.T01:CDS |
| AACCCGACCCGAAAACGGTT+TGG | 0.394395 | 5:+5588652 | None:intergenic |
| GATAATCTTTCACACTAGTT+GGG | 0.396532 | 5:-5588678 | MsG0580024497.01.T01:CDS |
| CCCTACGGTGGAGCTTGTGT+GGG | 0.404750 | 5:-5588455 | MsG0580024497.01.T01:CDS |
| TCCGGTGACGGCACCGGCAT+CGG | 0.414514 | 5:+5588761 | None:intergenic |
| AGATAATCTTTCACACTAGT+TGG | 0.417289 | 5:-5588679 | MsG0580024497.01.T01:CDS |
| AAGGGCTATGTTGGTTTGTC+GGG | 0.421378 | 5:-5588342 | MsG0580024497.01.T01:CDS |
| ACCCGACCCGAAAACGGTTT+GGG | 0.423044 | 5:+5588653 | None:intergenic |
| CATTGTTGGATGGACGAGTT+GGG | 0.425066 | 5:-5588277 | MsG0580024497.01.T01:CDS |
| CTCATGTGCTCCACCGCTGC+CGG | 0.432603 | 5:+5588388 | None:intergenic |
| GAAGGGCTATGTTGGTTTGT+CGG | 0.434234 | 5:-5588343 | MsG0580024497.01.T01:CDS |
| GGTGGAGCACATGAGAGTTC+TGG | 0.436097 | 5:-5588380 | MsG0580024497.01.T01:CDS |
| ATGGTTCCTCGACCCGGGTC+GGG | 0.449797 | 5:+5588556 | None:intergenic |
| GACTCGGTGAGTGGTGATAA+TGG | 0.453653 | 5:-5588251 | MsG0580024497.01.T01:CDS |
| ATCTCAACCCGACCCGAAAA+CGG | 0.459153 | 5:+5588647 | None:intergenic |
| GAGAGTTCTGGTGGTGGTAG+AGG | 0.460834 | 5:-5588368 | MsG0580024497.01.T01:CDS |
| TTGTCGGGTCATAGCGGGTA+GGG | 0.463168 | 5:-5588327 | MsG0580024497.01.T01:CDS |
| TGGTGATAATGGTGAGTTGT+TGG | 0.464789 | 5:-5588240 | MsG0580024497.01.T01:CDS |
| TCCGATGCCGGTGCCGTCAC+CGG | 0.472383 | 5:-5588762 | None:intergenic |
| TTGGGACCCACTTCCGGTGG+TGG | 0.473064 | 5:-5588479 | MsG0580024497.01.T01:CDS |
| TTTGTCGGGTCATAGCGGGT+AGG | 0.473834 | 5:-5588328 | MsG0580024497.01.T01:CDS |
| CACACCTTGCATTCTCCTCA+TGG | 0.473982 | 5:+5588537 | None:intergenic |
| GGTAGGGTTTCGAAGCGGGT+AGG | 0.482433 | 5:-5588311 | MsG0580024497.01.T01:CDS |
| AGAGAAGAGAAACGTGGGTC+CGG | 0.483126 | 5:+5588743 | None:intergenic |
| TAGAGGAAGAAGGGCTATGT+TGG | 0.483392 | 5:-5588351 | MsG0580024497.01.T01:CDS |
| CATGGTTCCTCGACCCGGGT+CGG | 0.484144 | 5:+5588555 | None:intergenic |
| TCCCTACGGTGGAGCTTGTG+TGG | 0.487032 | 5:-5588456 | MsG0580024497.01.T01:CDS |
| TCATTGTTGGATGGACGAGT+TGG | 0.487864 | 5:-5588278 | MsG0580024497.01.T01:CDS |
| GTAGGGTTTCGAAGCGGGTA+GGG | 0.492035 | 5:-5588310 | MsG0580024497.01.T01:CDS |
| GTAGGGACCACCACCGGAAG+TGG | 0.498018 | 5:+5588472 | None:intergenic |
| AGCGGGTAGGGTTTCGAAGC+GGG | 0.501775 | 5:-5588315 | MsG0580024497.01.T01:CDS |
| TTGGTTTGTCGGGTCATAGC+GGG | 0.503925 | 5:-5588332 | MsG0580024497.01.T01:CDS |
| CGTGGGTCCGGTGACGGCAC+CGG | 0.511510 | 5:+5588755 | None:intergenic |
| TGAAAACCCGACCCGGGTCG+AGG | 0.522623 | 5:-5588562 | MsG0580024497.01.T01:CDS |
| TCCTCATGGTTCCTCGACCC+GGG | 0.524172 | 5:+5588551 | None:intergenic |
| GGGTCGTTTCCAGGTGGGAA+AGG | 0.525413 | 5:-5588434 | MsG0580024497.01.T01:CDS |
| TTAATGAAGGTCATCCTTCG+AGG | 0.529916 | 5:-5588712 | MsG0580024497.01.T01:CDS |
| CCCACGTTTCTCTTCTCTCA+CGG | 0.532875 | 5:-5588738 | MsG0580024497.01.T01:CDS |
| ACTTCCGGTGGTGGTCCCTA+CGG | 0.535643 | 5:-5588470 | MsG0580024497.01.T01:CDS |
| GTTTCCAGGTGGGAAAGGTA+CGG | 0.544521 | 5:-5588429 | MsG0580024497.01.T01:CDS |
| CGGATGGGAATGAAGTAATG+AGG | 0.552081 | 5:-5588511 | MsG0580024497.01.T01:CDS |
| GTGTGGGGTCGTTTCCAGGT+GGG | 0.566405 | 5:-5588439 | MsG0580024497.01.T01:CDS |
| GAGAAACGTGGGTCCGGTGA+CGG | 0.568161 | 5:+5588749 | None:intergenic |
| CTGGTGGTGGTAGAGGAAGA+AGG | 0.571574 | 5:-5588361 | MsG0580024497.01.T01:CDS |
| GCCGCCGTACCTTTCCCACC+TGG | 0.571665 | 5:+5588425 | None:intergenic |
| TCTCTCACGGAGCTTAATGA+AGG | 0.572488 | 5:-5588725 | MsG0580024497.01.T01:CDS |
| TTTGTGGATTCATTGTTGGA+TGG | 0.576572 | 5:-5588287 | MsG0580024497.01.T01:CDS |
| CCCACACAAGCTCCACCGTA+GGG | 0.579037 | 5:+5588455 | None:intergenic |
| GAAACGGTGAAAACCCGACC+CGG | 0.582884 | 5:-5588569 | MsG0580024497.01.T01:CDS |
| TCCACCGTAGGGACCACCAC+CGG | 0.583606 | 5:+5588466 | None:intergenic |
| TCCGGTGGTGGTCCCTACGG+TGG | 0.586607 | 5:-5588467 | MsG0580024497.01.T01:CDS |
| AATGCAAGGTGTGTTGCGGA+TGG | 0.588283 | 5:-5588527 | MsG0580024497.01.T01:CDS |
| ATAATCTTTCACACTAGTTG+GGG | 0.589146 | 5:-5588677 | MsG0580024497.01.T01:CDS |
| CTATAAATGATAAGAAAACA+AGG | 0.599360 | 5:+5588194 | None:intergenic |
| GTTTGAAGAGTATCGCGAAA+CGG | 0.606536 | 5:-5588585 | MsG0580024497.01.T01:CDS |
| ATGGTTCAAGAACGGTGACT+CGG | 0.611808 | 5:-5588607 | MsG0580024497.01.T01:CDS |
| TGTGTGGGGTCGTTTCCAGG+TGG | 0.612180 | 5:-5588440 | MsG0580024497.01.T01:CDS |
| TGGTGGTGGTAGAGGAAGAA+GGG | 0.614198 | 5:-5588360 | MsG0580024497.01.T01:CDS |
| CCCCACACAAGCTCCACCGT+AGG | 0.618087 | 5:+5588454 | None:intergenic |
| AAACGGTGAAAACCCGACCC+GGG | 0.626432 | 5:-5588568 | MsG0580024497.01.T01:CDS |
| ATCTCCACCACATTCCTCGA+AGG | 0.627301 | 5:+5588698 | None:intergenic |
| TGGACGAGTTGGGTTTGACT+CGG | 0.631448 | 5:-5588267 | MsG0580024497.01.T01:CDS |
| TCATCCTTCGAGGAATGTGG+TGG | 0.633317 | 5:-5588702 | MsG0580024497.01.T01:CDS |
| TAGGGACCACCACCGGAAGT+GGG | 0.634452 | 5:+5588473 | None:intergenic |
| AGGTCATCCTTCGAGGAATG+TGG | 0.634610 | 5:-5588705 | MsG0580024497.01.T01:CDS |
| GTTGGGTTTGACTCGGTGAG+TGG | 0.640208 | 5:-5588260 | MsG0580024497.01.T01:CDS |
| TGTTTGGGACCCACTTCCGG+TGG | 0.640459 | 5:-5588482 | MsG0580024497.01.T01:CDS |
| ATGCAAGGTGTGTTGCGGAT+GGG | 0.645575 | 5:-5588526 | MsG0580024497.01.T01:CDS |
| GTTGGTTTGTCGGGTCATAG+CGG | 0.647807 | 5:-5588333 | MsG0580024497.01.T01:CDS |
| GGAACCATGAGGAGAATGCA+AGG | 0.648204 | 5:-5588541 | MsG0580024497.01.T01:CDS |
| CCTACGGTGGAGCTTGTGTG+GGG | 0.648346 | 5:-5588454 | MsG0580024497.01.T01:CDS |
| GGTGCACAATGGTTCAAGAA+CGG | 0.653704 | 5:-5588615 | MsG0580024497.01.T01:CDS |
| GCACATGAGAGTTCTGGTGG+TGG | 0.669402 | 5:-5588374 | MsG0580024497.01.T01:CDS |
| GGAGAATGCAAGGTGTGTTG+CGG | 0.683843 | 5:-5588531 | MsG0580024497.01.T01:CDS |
| CCGTGAGAGAAGAGAAACGT+GGG | 0.690837 | 5:+5588738 | None:intergenic |
| TCCAGGTGGGAAAGGTACGG+CGG | 0.695701 | 5:-5588426 | MsG0580024497.01.T01:CDS |
| GGAGCACATGAGAGTTCTGG+TGG | 0.698952 | 5:-5588377 | MsG0580024497.01.T01:CDS |
| TCCGTGAGAGAAGAGAAACG+TGG | 0.707164 | 5:+5588737 | None:intergenic |
| TAGCGGGTAGGGTTTCGAAG+CGG | 0.715503 | 5:-5588316 | MsG0580024497.01.T01:CDS |
| ACCCGGGTCGAGGAACCATG+AGG | 0.718709 | 5:-5588552 | MsG0580024497.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAATGATAAGAAAACA+AGG | + | Chr5:5588754-5588773 | None:intergenic | 20.0% |
| !!! | CTTGTTTTCTTATCATTTAT+AGG | - | Chr5:5588752-5588771 | MsG0580024497.01.T01:CDS | 20.0% |
| AGATAATCTTTCACACTAGT+TGG | - | Chr5:5588266-5588285 | MsG0580024497.01.T01:CDS | 30.0% | |
| AGTAATGAGGTTTCATTGTT+TGG | - | Chr5:5588447-5588466 | MsG0580024497.01.T01:CDS | 30.0% | |
| ATAATCTTTCACACTAGTTG+GGG | - | Chr5:5588268-5588287 | MsG0580024497.01.T01:CDS | 30.0% | |
| GATAATCTTTCACACTAGTT+GGG | - | Chr5:5588267-5588286 | MsG0580024497.01.T01:CDS | 30.0% | |
| GTAATGAGGTTTCATTGTTT+GGG | - | Chr5:5588448-5588467 | MsG0580024497.01.T01:CDS | 30.0% | |
| TTTGTGGATTCATTGTTGGA+TGG | - | Chr5:5588658-5588677 | MsG0580024497.01.T01:CDS | 35.0% | |
| !! | ATGATTTTCAAGGTGCACAA+TGG | - | Chr5:5588319-5588338 | MsG0580024497.01.T01:CDS | 35.0% |
| AGGGTTTGTGGATTCATTGT+TGG | - | Chr5:5588654-5588673 | MsG0580024497.01.T01:CDS | 40.0% | |
| TTAATGAAGGTCATCCTTCG+AGG | - | Chr5:5588233-5588252 | MsG0580024497.01.T01:CDS | 40.0% | |
| !! | GTTTGAAGAGTATCGCGAAA+CGG | - | Chr5:5588360-5588379 | MsG0580024497.01.T01:CDS | 40.0% |
| !! | TGGTGATAATGGTGAGTTGT+TGG | - | Chr5:5588705-5588724 | MsG0580024497.01.T01:CDS | 40.0% |
| !!! | TCGGGTTGAGATGATTTTCA+AGG | - | Chr5:5588309-5588328 | MsG0580024497.01.T01:CDS | 40.0% |
| ATGGTTCAAGAACGGTGACT+CGG | - | Chr5:5588338-5588357 | MsG0580024497.01.T01:CDS | 45.0% | |
| CATTGTTGGATGGACGAGTT+GGG | - | Chr5:5588668-5588687 | MsG0580024497.01.T01:CDS | 45.0% | |
| CGGATGGGAATGAAGTAATG+AGG | - | Chr5:5588434-5588453 | MsG0580024497.01.T01:CDS | 45.0% | |
| GGTGCACAATGGTTCAAGAA+CGG | - | Chr5:5588330-5588349 | MsG0580024497.01.T01:CDS | 45.0% | |
| TAGAGGAAGAAGGGCTATGT+TGG | - | Chr5:5588594-5588613 | MsG0580024497.01.T01:CDS | 45.0% | |
| TCATTGTTGGATGGACGAGT+TGG | - | Chr5:5588667-5588686 | MsG0580024497.01.T01:CDS | 45.0% | |
| TCTCTCACGGAGCTTAATGA+AGG | - | Chr5:5588220-5588239 | MsG0580024497.01.T01:CDS | 45.0% | |
| !! | AAGGGCTATGTTGGTTTGTC+GGG | - | Chr5:5588603-5588622 | MsG0580024497.01.T01:CDS | 45.0% |
| !! | GAAGGGCTATGTTGGTTTGT+CGG | - | Chr5:5588602-5588621 | MsG0580024497.01.T01:CDS | 45.0% |
| AATGCAAGGTGTGTTGCGGA+TGG | - | Chr5:5588418-5588437 | MsG0580024497.01.T01:CDS | 50.0% | |
| AGAGAAGAGAAACGTGGGTC+CGG | + | Chr5:5588205-5588224 | None:intergenic | 50.0% | |
| AGGTCATCCTTCGAGGAATG+TGG | - | Chr5:5588240-5588259 | MsG0580024497.01.T01:CDS | 50.0% | |
| ATCTCAACCCGACCCGAAAA+CGG | + | Chr5:5588301-5588320 | None:intergenic | 50.0% | |
| ATCTCCACCACATTCCTCGA+AGG | + | Chr5:5588250-5588269 | None:intergenic | 50.0% | |
| ATGCAAGGTGTGTTGCGGAT+GGG | - | Chr5:5588419-5588438 | MsG0580024497.01.T01:CDS | 50.0% | |
| CACACCTTGCATTCTCCTCA+TGG | + | Chr5:5588411-5588430 | None:intergenic | 50.0% | |
| CCCACGTTTCTCTTCTCTCA+CGG | - | Chr5:5588207-5588226 | MsG0580024497.01.T01:CDS | 50.0% | |
| CCGTGAGAGAAGAGAAACGT+GGG | + | Chr5:5588210-5588229 | None:intergenic | 50.0% | |
| GGAACCATGAGGAGAATGCA+AGG | - | Chr5:5588404-5588423 | MsG0580024497.01.T01:CDS | 50.0% | |
| GGAGAATGCAAGGTGTGTTG+CGG | - | Chr5:5588414-5588433 | MsG0580024497.01.T01:CDS | 50.0% | |
| GTTTCCAGGTGGGAAAGGTA+CGG | - | Chr5:5588516-5588535 | MsG0580024497.01.T01:CDS | 50.0% | |
| TCATCCTTCGAGGAATGTGG+TGG | - | Chr5:5588243-5588262 | MsG0580024497.01.T01:CDS | 50.0% | |
| TCCGTGAGAGAAGAGAAACG+TGG | + | Chr5:5588211-5588230 | None:intergenic | 50.0% | |
| ! | ATCTGCACATTTTCCGGCAG+CGG | - | Chr5:5588544-5588563 | MsG0580024497.01.T01:CDS | 50.0% |
| ! | CATTGTTTGGGACCCACTTC+CGG | - | Chr5:5588460-5588479 | MsG0580024497.01.T01:CDS | 50.0% |
| ! | TGGACGAGTTGGGTTTGACT+CGG | - | Chr5:5588678-5588697 | MsG0580024497.01.T01:CDS | 50.0% |
| ! | TTGGGGACCCAAACCGTTTT+CGG | - | Chr5:5588285-5588304 | MsG0580024497.01.T01:CDS | 50.0% |
| !! | GACTCGGTGAGTGGTGATAA+TGG | - | Chr5:5588694-5588713 | MsG0580024497.01.T01:CDS | 50.0% |
| !! | GTTGGTTTGTCGGGTCATAG+CGG | - | Chr5:5588612-5588631 | MsG0580024497.01.T01:CDS | 50.0% |
| !! | TGGTGGTGGTAGAGGAAGAA+GGG | - | Chr5:5588585-5588604 | MsG0580024497.01.T01:CDS | 50.0% |
| !! | TTGGTTTGTCGGGTCATAGC+GGG | - | Chr5:5588613-5588632 | MsG0580024497.01.T01:CDS | 50.0% |
| AAACGGTGAAAACCCGACCC+GGG | - | Chr5:5588377-5588396 | MsG0580024497.01.T01:CDS | 55.0% | |
| AACCCGACCCGAAAACGGTT+TGG | + | Chr5:5588296-5588315 | None:intergenic | 55.0% | |
| ACCCGACCCGAAAACGGTTT+GGG | + | Chr5:5588295-5588314 | None:intergenic | 55.0% | |
| GAAACGGTGAAAACCCGACC+CGG | - | Chr5:5588376-5588395 | MsG0580024497.01.T01:CDS | 55.0% | |
| GGTGGAGCACATGAGAGTTC+TGG | - | Chr5:5588565-5588584 | MsG0580024497.01.T01:CDS | 55.0% | |
| GTAGGGTTTCGAAGCGGGTA+GGG | - | Chr5:5588635-5588654 | MsG0580024497.01.T01:CDS | 55.0% | |
| TTCGAAGCGGGTAGGGTTTG+TGG | - | Chr5:5588642-5588661 | MsG0580024497.01.T01:CDS | 55.0% | |
| ! | GCACATGAGAGTTCTGGTGG+TGG | - | Chr5:5588571-5588590 | MsG0580024497.01.T01:CDS | 55.0% |
| ! | GCGGCGATCTGCACATTTTC+CGG | - | Chr5:5588538-5588557 | MsG0580024497.01.T01:CDS | 55.0% |
| ! | GGAGCACATGAGAGTTCTGG+TGG | - | Chr5:5588568-5588587 | MsG0580024497.01.T01:CDS | 55.0% |
| ! | TAGCGGGTAGGGTTTCGAAG+CGG | - | Chr5:5588629-5588648 | MsG0580024497.01.T01:CDS | 55.0% |
| ! | TGGGGACCCAAACCGTTTTC+GGG | - | Chr5:5588286-5588305 | MsG0580024497.01.T01:CDS | 55.0% |
| !! | CTGGTGGTGGTAGAGGAAGA+AGG | - | Chr5:5588584-5588603 | MsG0580024497.01.T01:CDS | 55.0% |
| !! | GAGAGTTCTGGTGGTGGTAG+AGG | - | Chr5:5588577-5588596 | MsG0580024497.01.T01:CDS | 55.0% |
| !! | GTTGGGTTTGACTCGGTGAG+TGG | - | Chr5:5588685-5588704 | MsG0580024497.01.T01:CDS | 55.0% |
| !! | TTGTCGGGTCATAGCGGGTA+GGG | - | Chr5:5588618-5588637 | MsG0580024497.01.T01:CDS | 55.0% |
| !! | TTTGTCGGGTCATAGCGGGT+AGG | - | Chr5:5588617-5588636 | MsG0580024497.01.T01:CDS | 55.0% |
| !!! | ACCCAAACCGTTTTCGGGTC+GGG | - | Chr5:5588291-5588310 | MsG0580024497.01.T01:CDS | 55.0% |
| !!! | GACCCAAACCGTTTTCGGGT+CGG | - | Chr5:5588290-5588309 | MsG0580024497.01.T01:CDS | 55.0% |
| AGCGGGTAGGGTTTCGAAGC+GGG | - | Chr5:5588630-5588649 | MsG0580024497.01.T01:CDS | 60.0% | |
| CCCACACAAGCTCCACCGTA+GGG | + | Chr5:5588493-5588512 | None:intergenic | 60.0% | |
| CCCTACGGTGGAGCTTGTGT+GGG | - | Chr5:5588490-5588509 | MsG0580024497.01.T01:CDS | 60.0% | |
| CCTACGGTGGAGCTTGTGTG+GGG | - | Chr5:5588491-5588510 | MsG0580024497.01.T01:CDS | 60.0% | |
| CTCCTCATGGTTCCTCGACC+CGG | + | Chr5:5588398-5588417 | None:intergenic | 60.0% | |
| GAGAAACGTGGGTCCGGTGA+CGG | + | Chr5:5588199-5588218 | None:intergenic | 60.0% | |
| GCTTGTGTGGGGTCGTTTCC+AGG | - | Chr5:5588502-5588521 | MsG0580024497.01.T01:CDS | 60.0% | |
| GGGTCGTTTCCAGGTGGGAA+AGG | - | Chr5:5588511-5588530 | MsG0580024497.01.T01:CDS | 60.0% | |
| GGTAGGGTTTCGAAGCGGGT+AGG | - | Chr5:5588634-5588653 | MsG0580024497.01.T01:CDS | 60.0% | |
| GTGTGGGGTCGTTTCCAGGT+GGG | - | Chr5:5588506-5588525 | MsG0580024497.01.T01:CDS | 60.0% | |
| TAGGGACCACCACCGGAAGT+GGG | + | Chr5:5588475-5588494 | None:intergenic | 60.0% | |
| TCCCTACGGTGGAGCTTGTG+TGG | - | Chr5:5588489-5588508 | MsG0580024497.01.T01:CDS | 60.0% | |
| TCCTCATGGTTCCTCGACCC+GGG | + | Chr5:5588397-5588416 | None:intergenic | 60.0% | |
| TGTGTGGGGTCGTTTCCAGG+TGG | - | Chr5:5588505-5588524 | MsG0580024497.01.T01:CDS | 60.0% | |
| ! | ACTTCCGGTGGTGGTCCCTA+CGG | - | Chr5:5588475-5588494 | MsG0580024497.01.T01:CDS | 60.0% |
| ! | TCCAGGTGGGAAAGGTACGG+CGG | - | Chr5:5588519-5588538 | MsG0580024497.01.T01:CDS | 60.0% |
| ! | TGCACATTTTCCGGCAGCGG+TGG | - | Chr5:5588547-5588566 | MsG0580024497.01.T01:CDS | 60.0% |
| ! | TGTTTGGGACCCACTTCCGG+TGG | - | Chr5:5588463-5588482 | MsG0580024497.01.T01:CDS | 60.0% |
| ACCCGGGTCGAGGAACCATG+AGG | - | Chr5:5588393-5588412 | MsG0580024497.01.T01:CDS | 65.0% | |
| ATGGTTCCTCGACCCGGGTC+GGG | + | Chr5:5588392-5588411 | None:intergenic | 65.0% | |
| CATGGTTCCTCGACCCGGGT+CGG | + | Chr5:5588393-5588412 | None:intergenic | 65.0% | |
| CCCCACACAAGCTCCACCGT+AGG | + | Chr5:5588494-5588513 | None:intergenic | 65.0% | |
| CTCATGTGCTCCACCGCTGC+CGG | + | Chr5:5588560-5588579 | None:intergenic | 65.0% | |
| GTAGGGACCACCACCGGAAG+TGG | + | Chr5:5588476-5588495 | None:intergenic | 65.0% | |
| TCCACCGTAGGGACCACCAC+CGG | + | Chr5:5588482-5588501 | None:intergenic | 65.0% | |
| TGAAAACCCGACCCGGGTCG+AGG | - | Chr5:5588383-5588402 | MsG0580024497.01.T01:CDS | 65.0% | |
| TTGGGACCCACTTCCGGTGG+TGG | - | Chr5:5588466-5588485 | MsG0580024497.01.T01:CDS | 65.0% | |
| GCCGCCGTACCTTTCCCACC+TGG | + | Chr5:5588523-5588542 | None:intergenic | 70.0% | |
| ! | TCCGGTGGTGGTCCCTACGG+TGG | - | Chr5:5588478-5588497 | MsG0580024497.01.T01:CDS | 70.0% |
| ! | CGTGGGTCCGGTGACGGCAC+CGG | + | Chr5:5588193-5588212 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 5588187 | 5588780 | 5588187 | ID=MsG0580024497.01;Name=MsG0580024497.01 |
| Chr5 | mRNA | 5588187 | 5588780 | 5588187 | ID=MsG0580024497.01.T01;Parent=MsG0580024497.01;Name=MsG0580024497.01.T01;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|197 |
| Chr5 | exon | 5588187 | 5588780 | 5588187 | ID=MsG0580024497.01.T01:exon:2426;Parent=MsG0580024497.01.T01 |
| Chr5 | CDS | 5588187 | 5588780 | 5588187 | ID=MsG0580024497.01.T01:cds;Parent=MsG0580024497.01.T01 |
| Gene Sequence |
| Protein sequence |
