AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032558.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032558.01.T01 MTR_2g044900 90.610 213 13 2 12 220 93 302 2.35e-139 392
MsG0680032558.01.T01 MTR_4g124450 82.653 196 31 1 25 220 137 329 4.71e-118 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032558.01.T01 AT4G33140 73.711 194 48 1 25 218 158 348 1.35e-104 306

Find 67 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATACTCTTCACAAATTA+AGG 0.190158 6:+44677080 MsG0680032558.01.T01:three_prime_UTR
CGAAAAGGAGCTATGGAATT+TGG 0.221944 6:+44677377 MsG0680032558.01.T01:three_prime_UTR
TAGAATGTGAAATGAATTCT+AGG 0.293335 6:+44674573 None:intergenic
GGAAACCACTTTGCTCTTGA+TGG 0.302748 6:+44675692 MsG0680032558.01.T01:CDS
CGCATAATCCATGATGTTGC+AGG 0.313175 6:-44676831 None:intergenic
GCACACTCCATTGCATATCT+TGG 0.332510 6:-44676648 None:intergenic
TGCAGGGCCATTTGAGCACC+TGG 0.362021 6:-44675459 None:intergenic
TTGTGCACAAAGTTGAGAAC+TGG 0.382262 6:+44676754 MsG0680032558.01.T01:CDS
TAATACTCTTAGCTTCCGTT+TGG 0.385351 6:+44676891 MsG0680032558.01.T01:three_prime_UTR
AGATGAAGCAAATGCACGTC+AGG 0.390076 6:-44674617 None:intergenic
AATTTGTCTAATGCTGTGTT+TGG 0.393570 6:-44677028 None:intergenic
ATTATGAAAATTCGTATCCT+TGG 0.397134 6:+44676700 MsG0680032558.01.T01:CDS
ATCTCTTCGGCCGGCGAAGA+AGG 0.399595 6:+44677210 MsG0680032558.01.T01:three_prime_UTR
GAGACACCATATTTCAAGTC+AGG 0.403009 6:+44675423 MsG0680032558.01.T01:CDS
CTCTTAGCTTCCGTTTGGGT+GGG 0.407777 6:+44676896 MsG0680032558.01.T01:three_prime_UTR
GAAGAGTAGGACTCTAATTC+CGG 0.409947 6:-44676676 None:intergenic
TCTCTATCCACTCAATTGTA+TGG 0.412670 6:-44675634 None:intergenic
TGGATCCCTGACTTGAAATA+TGG 0.424392 6:-44675429 None:intergenic
AATACTCTTAGCTTCCGTTT+GGG 0.431823 6:+44676892 MsG0680032558.01.T01:three_prime_UTR
TACCTACAAATCTCTGACTT+TGG 0.432537 6:-44675725 None:intergenic
GACCAAAGTCAGAGATTTGT+AGG 0.439771 6:+44675723 MsG0680032558.01.T01:CDS
ACCTATCCCAGGTGCTCAAA+TGG 0.447702 6:+44675452 MsG0680032558.01.T01:CDS
GCCAGTTTCCATCTATGAAA+AGG 0.450976 6:-44677157 None:intergenic
AAATCATGTTAAATTGGCAC+TGG 0.453508 6:-44676943 None:intergenic
CACACTCCATTGCATATCTT+GGG 0.458461 6:-44676647 None:intergenic
CACTGATAGTAATATCTCTT+CGG 0.465895 6:+44677197 MsG0680032558.01.T01:three_prime_UTR
CATCAGTGTGAACGTGGGTT+TGG 0.474961 6:+44676988 MsG0680032558.01.T01:three_prime_UTR
TGTCAGGTCTTTAAATGCTA+AGG 0.479945 6:+44676608 MsG0680032558.01.T01:intron
AAACGTACGTTACAATTGAT+AGG 0.487196 6:-44675503 None:intergenic
TCTTCGGCCGGCGAAGAAGG+TGG 0.495477 6:+44677213 MsG0680032558.01.T01:three_prime_UTR
TTCTCAACTTTGTGCACAAG+AGG 0.495561 6:-44676750 None:intergenic
AGAATCTTGATAATTTCTGC+AGG 0.497783 6:-44675476 None:intergenic
ACTCTTAGCTTCCGTTTGGG+TGG 0.499773 6:+44676895 MsG0680032558.01.T01:three_prime_UTR
CAGTGTGAACGTGGGTTTGG+TGG 0.500303 6:+44676991 MsG0680032558.01.T01:three_prime_UTR
GATTTATACGCCCACCCAAA+CGG 0.508852 6:-44676906 None:intergenic
TTTGAGCACCTGGGATAGGT+TGG 0.510876 6:-44675449 None:intergenic
ATCTCGGCAGAATGCAATCA+AGG 0.513617 6:+44675610 MsG0680032558.01.T01:CDS
TTGTTTGATGAGATTCACTT+TGG 0.519259 6:+44675671 MsG0680032558.01.T01:CDS
TCATGTGTACGAGTTCTTCA+AGG 0.525104 6:+44674733 MsG0680032558.01.T01:CDS
AACTAACCGAAAAGGAGCTA+TGG 0.526618 6:+44677370 MsG0680032558.01.T01:three_prime_UTR
GAGACTAACTTGATAAGTAG+TGG 0.535863 6:+44677339 MsG0680032558.01.T01:three_prime_UTR
AATTAAGGTGTTGAGATGAA+TGG 0.541821 6:+44677095 MsG0680032558.01.T01:three_prime_UTR
GCCATTTGAGCACCTGGGAT+AGG 0.544114 6:-44675453 None:intergenic
GATAGTAATATCTCTTCGGC+CGG 0.546223 6:+44677201 MsG0680032558.01.T01:three_prime_UTR
AGACACCATATTTCAAGTCA+GGG 0.550687 6:+44675424 MsG0680032558.01.T01:CDS
TGGAACTGTTCACGAGATGA+AGG 0.550851 6:+44675231 MsG0680032558.01.T01:CDS
TCTTCGCCCACCTTCTTCGC+CGG 0.556224 6:-44677220 None:intergenic
ATGAAGCAAATGCACGTCAG+GGG 0.561447 6:-44674615 None:intergenic
CTTCGGCCGGCGAAGAAGGT+GGG 0.561801 6:+44677214 MsG0680032558.01.T01:three_prime_UTR
TTCTAGCATCAGTGTGAACG+TGG 0.564885 6:+44676982 MsG0680032558.01.T01:three_prime_UTR
GGTATGCTTAGAACAGAAGA+AGG 0.566633 6:+44677116 MsG0680032558.01.T01:three_prime_UTR
GGCGAAGAAGGTGGGCGAAG+AGG 0.588391 6:+44677222 MsG0680032558.01.T01:three_prime_UTR
TGTGCACAAAGTTGAGAACT+GGG 0.588436 6:+44676755 MsG0680032558.01.T01:CDS
TGATAACCCAAGATATGCAA+TGG 0.600210 6:+44676641 MsG0680032558.01.T01:CDS
GCAATGGAGTGTGCTGAAGC+CGG 0.600294 6:+44676657 MsG0680032558.01.T01:CDS
TCAGGGATCCAACCTATCCC+AGG 0.600533 6:+44675441 MsG0680032558.01.T01:CDS
GCAAACTCAGTCTTGCTCCA+AGG 0.602101 6:-44676717 None:intergenic
GATGAAGCAAATGCACGTCA+GGG 0.609755 6:-44674616 None:intergenic
AATCATGTTAAATTGGCACT+GGG 0.614248 6:-44676942 None:intergenic
ACACTCCATCAAGAGCAAAG+TGG 0.619283 6:-44675697 None:intergenic
TGAAGCAAATGCACGTCAGG+GGG 0.628211 6:-44674614 None:intergenic
GCAGGGCCATTTGAGCACCT+GGG 0.630750 6:-44675458 None:intergenic
TCAAGGACCATACAATTGAG+TGG 0.630919 6:+44675627 MsG0680032558.01.T01:CDS
GAATCTTGATAATTTCTGCA+GGG 0.644876 6:-44675475 None:intergenic
TCTAGCATCAGTGTGAACGT+GGG 0.678861 6:+44676983 MsG0680032558.01.T01:three_prime_UTR
ATGCTGTGTTTGGAATTGCG+TGG 0.698389 6:-44677018 None:intergenic
AAGAGATATTACTATCAGTG+TGG 0.703545 6:-44677194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAAAAAAAGACT+TGG - Chr6:44676520-44676539 None:intergenic 15.0%
!! AGTGATTCATTAAAATAAAT+TGG - Chr6:44675945-44675964 None:intergenic 15.0%
!! ATCTATAAACAATAAATCAT+TGG - Chr6:44676577-44676596 None:intergenic 15.0%
!! GTGATTCATTAAAATAAATT+GGG - Chr6:44675944-44675963 None:intergenic 15.0%
!! TAAATCAAATGATAAAAAAG+TGG - Chr6:44676021-44676040 None:intergenic 15.0%
!! TATTTAGGGAATAAAAATAT+AGG - Chr6:44675781-44675800 None:intergenic 15.0%
!! TATTTAGTATAAGTTTGAAT+TGG + Chr6:44675898-44675917 MsG0680032558.01.T01:intron 15.0%
!! TGAAAAAAATCATGTTAAAT+TGG - Chr6:44676952-44676971 None:intergenic 15.0%
!!! CATTAAAATCTGTATTTTTT+TGG + Chr6:44676396-44676415 MsG0680032558.01.T01:intron 15.0%
!! ATGCAAGATAATGAATAAAA+TGG - Chr6:44675109-44675128 None:intergenic 20.0%
!! TAAAAATATAGGAGAAATGA+AGG - Chr6:44675770-44675789 None:intergenic 20.0%
!! TGCTTACATATATAAAAACA+TGG + Chr6:44675008-44675027 MsG0680032558.01.T01:intron 20.0%
!!! ATTTGGTTTATTTGAGATTA+TGG + Chr6:44674880-44674899 MsG0680032558.01.T01:intron 20.0%
!!! CTTTTTTTTTATGCAGTATT+AGG + Chr6:44674641-44674660 MsG0680032558.01.T01:CDS 20.0%
!!! TTTTATTCATTATCTTGCAT+TGG + Chr6:44675109-44675128 MsG0680032558.01.T01:intron 20.0%
! ACTACATGCATATTGATATT+TGG + Chr6:44674863-44674882 MsG0680032558.01.T01:intron 25.0%
! AGAAATCGATATCTTCTTAT+TGG + Chr6:44675371-44675390 MsG0680032558.01.T01:intron 25.0%
! ATAAGCATAATGAACGAAAA+TGG - Chr6:44675305-44675324 None:intergenic 25.0%
! ATATGTTTATGTTCAGATCT+CGG + Chr6:44675594-44675613 MsG0680032558.01.T01:intron 25.0%
! ATTATGAAAATTCGTATCCT+TGG + Chr6:44676700-44676719 MsG0680032558.01.T01:CDS 25.0%
! CAATTCATGATTCGAAAAAT+AGG + Chr6:44676176-44676195 MsG0680032558.01.T01:intron 25.0%
! CATAAAATGAAACAACAGAA+CGG - Chr6:44675270-44675289 None:intergenic 25.0%
! GTAATACTCTTCACAAATTA+AGG + Chr6:44677080-44677099 MsG0680032558.01.T01:three_prime_UTR 25.0%
! TAGATTCTTTATACATTGTC+AGG + Chr6:44676592-44676611 MsG0680032558.01.T01:intron 25.0%
! TGACACATTTAATGCAAAAA+TGG - Chr6:44677287-44677306 None:intergenic 25.0%
! TTTCGTAATTCATTCATACA+TGG + Chr6:44675812-44675831 MsG0680032558.01.T01:intron 25.0%
!! AATTTTCATAATCGAAGAGT+AGG - Chr6:44676692-44676711 None:intergenic 25.0%
!! ACTAAATATATGTATCGATC+AGG - Chr6:44675886-44675905 None:intergenic 25.0%
!! ATTTTATGCAAGTCGTATTT+TGG + Chr6:44675843-44675862 MsG0680032558.01.T01:intron 25.0%
!!! AAAGTGACAGGTTTTATTTA+GGG - Chr6:44675795-44675814 None:intergenic 25.0%
!!! AACATGATTTTTTTCAAAGC+TGG + Chr6:44676956-44676975 MsG0680032558.01.T01:three_prime_UTR 25.0%
!!! GATGATATAGATTAGCTTAT+AGG + Chr6:44676074-44676093 MsG0680032558.01.T01:intron 25.0%
AAACGTACGTTACAATTGAT+AGG - Chr6:44675506-44675525 None:intergenic 30.0%
AAATATAGGAGAAATGAAGG+TGG - Chr6:44675767-44675786 None:intergenic 30.0%
AAATCATGTTAAATTGGCAC+TGG - Chr6:44676946-44676965 None:intergenic 30.0%
AAGAGATATTACTATCAGTG+TGG - Chr6:44677197-44677216 None:intergenic 30.0%
AATCATGTTAAATTGGCACT+GGG - Chr6:44676945-44676964 None:intergenic 30.0%
AATGTTAATAGATGCATGCA+TGG - Chr6:44676236-44676255 None:intergenic 30.0%
AATTTGTCTAATGCTGTGTT+TGG - Chr6:44677031-44677050 None:intergenic 30.0%
ACCATTATAACTCCAATACA+AGG - Chr6:44674913-44674932 None:intergenic 30.0%
AGAAAGCAAAAATGATTCCA+AGG + Chr6:44677258-44677277 MsG0680032558.01.T01:three_prime_UTR 30.0%
ATATCTGTAAGGGAAATGAA+GGG - Chr6:44675212-44675231 None:intergenic 30.0%
CAAAGTTGACATGAAAAAAG+TGG - Chr6:44675989-44676008 None:intergenic 30.0%
CACTGATAGTAATATCTCTT+CGG + Chr6:44677197-44677216 MsG0680032558.01.T01:three_prime_UTR 30.0%
CCATTATAACTCCAATACAA+GGG - Chr6:44674912-44674931 None:intergenic 30.0%
TAATGCAAAAATGGTATCCT+TGG - Chr6:44677278-44677297 None:intergenic 30.0%
TATGGTATTAACCCTTGTAT+TGG + Chr6:44674898-44674917 MsG0680032558.01.T01:intron 30.0%
TCATGCTGCATAACAATATT+TGG + Chr6:44675341-44675360 MsG0680032558.01.T01:intron 30.0%
TTGTTTGATGAGATTCACTT+TGG + Chr6:44675671-44675690 MsG0680032558.01.T01:CDS 30.0%
! AACATTTTGAACTATAGACC+CGG + Chr6:44676250-44676269 MsG0680032558.01.T01:intron 30.0%
! AGAATCTTGATAATTTCTGC+AGG - Chr6:44675479-44675498 None:intergenic 30.0%
! CAGCATGAACAAATTTTATC+AGG - Chr6:44675329-44675348 None:intergenic 30.0%
! GAATCTTGATAATTTCTGCA+GGG - Chr6:44675478-44675497 None:intergenic 30.0%
! TGGATAGAGAATAACTTTTC+AGG + Chr6:44675647-44675666 MsG0680032558.01.T01:CDS 30.0%
!! AATTAAGGTGTTGAGATGAA+TGG + Chr6:44677095-44677114 MsG0680032558.01.T01:three_prime_UTR 30.0%
!!! AGATTTTTGAAGCAGTAAAC+AGG - Chr6:44674764-44674783 None:intergenic 30.0%
!!! GAAAGTGACAGGTTTTATTT+AGG - Chr6:44675796-44675815 None:intergenic 30.0%
AATACTCTTAGCTTCCGTTT+GGG + Chr6:44676892-44676911 MsG0680032558.01.T01:three_prime_UTR 35.0%
ACCATTCAATCCTCATTGAA+CGG - Chr6:44676328-44676347 None:intergenic 35.0%
CATATCTGTAAGGGAAATGA+AGG - Chr6:44675213-44675232 None:intergenic 35.0%
CCCTTGTATTGGAGTTATAA+TGG + Chr6:44674909-44674928 MsG0680032558.01.T01:intron 35.0%
CTAAAAATCCTGCAACATCA+TGG + Chr6:44676823-44676842 MsG0680032558.01.T01:three_prime_UTR 35.0%
CTTCATTTCCCTTACAGATA+TGG + Chr6:44675211-44675230 MsG0680032558.01.T01:intron 35.0%
GAACAGTTCCATATCTGTAA+GGG - Chr6:44675222-44675241 None:intergenic 35.0%
GAATGAATTACGAAAGTGAC+AGG - Chr6:44675807-44675826 None:intergenic 35.0%
GAGACTAACTTGATAAGTAG+TGG + Chr6:44677339-44677358 MsG0680032558.01.T01:three_prime_UTR 35.0%
GTCGAAAGAACAGAATTATG+AGG - Chr6:44675044-44675063 None:intergenic 35.0%
TAATACTCTTAGCTTCCGTT+TGG + Chr6:44676891-44676910 MsG0680032558.01.T01:three_prime_UTR 35.0%
TAATTTCCAGCTAACTATCG+TGG - Chr6:44674821-44674840 None:intergenic 35.0%
TACCTACAAATCTCTGACTT+TGG - Chr6:44675728-44675747 None:intergenic 35.0%
TCAAAATACCGAGATGAATC+TGG - Chr6:44676351-44676370 None:intergenic 35.0%
TCTCTATCCACTCAATTGTA+TGG - Chr6:44675637-44675656 None:intergenic 35.0%
TGAACAGTTCCATATCTGTA+AGG - Chr6:44675223-44675242 None:intergenic 35.0%
TGATAACCCAAGATATGCAA+TGG + Chr6:44676641-44676660 MsG0680032558.01.T01:CDS 35.0%
TGTCAGGTCTTTAAATGCTA+AGG + Chr6:44676608-44676627 MsG0680032558.01.T01:intron 35.0%
TTCCCTCTTCATAATATGCA+GGG - Chr6:44674950-44674969 None:intergenic 35.0%
TTCCCTGCATATTATGAAGA+GGG + Chr6:44674945-44674964 MsG0680032558.01.T01:intron 35.0%
TTGGATTGTCTGATCAAGAT+TGG + Chr6:44676415-44676434 MsG0680032558.01.T01:intron 35.0%
TTGTTAGGGTACATATCGAA+CGG + Chr6:44676291-44676310 MsG0680032558.01.T01:intron 35.0%
TTTCCCTGCATATTATGAAG+AGG + Chr6:44674944-44674963 MsG0680032558.01.T01:intron 35.0%
! ACGTTTTCAACTAACCGAAA+AGG + Chr6:44677362-44677381 MsG0680032558.01.T01:three_prime_UTR 35.0%
! AGACACCATATTTCAAGTCA+GGG + Chr6:44675424-44675443 MsG0680032558.01.T01:CDS 35.0%
! CAAATTCCATAGCTCCTTTT+CGG - Chr6:44677379-44677398 None:intergenic 35.0%
! TTGAGAAGCCTTTTCATAGA+TGG + Chr6:44677149-44677168 MsG0680032558.01.T01:three_prime_UTR 35.0%
AACTAACCGAAAAGGAGCTA+TGG + Chr6:44677370-44677389 MsG0680032558.01.T01:three_prime_UTR 40.0%
AGCTTATAGGTTGTCTGTGT+TGG + Chr6:44676087-44676106 MsG0680032558.01.T01:intron 40.0%
ATAAAATGGCTCGAGAGAAG+AGG - Chr6:44675095-44675114 None:intergenic 40.0%
CACACTCCATTGCATATCTT+GGG - Chr6:44676650-44676669 None:intergenic 40.0%
CATACACGCATTCTAGACAT+TGG - Chr6:44676448-44676467 None:intergenic 40.0%
CATGCAGTCACTAGTTGTTA+GGG + Chr6:44676277-44676296 MsG0680032558.01.T01:intron 40.0%
CGAAAAGGAGCTATGGAATT+TGG + Chr6:44677377-44677396 MsG0680032558.01.T01:three_prime_UTR 40.0%
CTAACAACTAGTGACTGCAT+GGG - Chr6:44676278-44676297 None:intergenic 40.0%
GAAGAGTAGGACTCTAATTC+CGG - Chr6:44676679-44676698 None:intergenic 40.0%
GAATCCGAATTCACTCTAGA+TGG + Chr6:44676488-44676507 MsG0680032558.01.T01:intron 40.0%
GACCAAAGTCAGAGATTTGT+AGG + Chr6:44675723-44675742 MsG0680032558.01.T01:CDS 40.0%
GATAGTAATATCTCTTCGGC+CGG + Chr6:44677201-44677220 MsG0680032558.01.T01:three_prime_UTR 40.0%
GCCAGTTTCCATCTATGAAA+AGG - Chr6:44677160-44677179 None:intergenic 40.0%
GGTATGCTTAGAACAGAAGA+AGG + Chr6:44677116-44677135 MsG0680032558.01.T01:three_prime_UTR 40.0%
GTTCCCTCTTCATAATATGC+AGG - Chr6:44674951-44674970 None:intergenic 40.0%
TAGGAGAAATGAAGGTGGAT+AGG - Chr6:44675762-44675781 None:intergenic 40.0%
TCAAGGACCATACAATTGAG+TGG + Chr6:44675627-44675646 MsG0680032558.01.T01:CDS 40.0%
TCATGTGTACGAGTTCTTCA+AGG + Chr6:44674733-44674752 MsG0680032558.01.T01:CDS 40.0%
TGAATGGTCCAGATTCATCT+CGG + Chr6:44676340-44676359 MsG0680032558.01.T01:intron 40.0%
TGTGCACAAAGTTGAGAACT+GGG + Chr6:44676755-44676774 MsG0680032558.01.T01:CDS 40.0%
TTCTCAACTTTGTGCACAAG+AGG - Chr6:44676753-44676772 None:intergenic 40.0%
TTGTGCACAAAGTTGAGAAC+TGG + Chr6:44676754-44676773 MsG0680032558.01.T01:CDS 40.0%
! CTGTCCATCTAGAGTGAATT+CGG - Chr6:44676495-44676514 None:intergenic 40.0%
! CTGTTCTTTCGACGTTTTCT+TGG + Chr6:44675051-44675070 MsG0680032558.01.T01:intron 40.0%
! GAGACACCATATTTCAAGTC+AGG + Chr6:44675423-44675442 MsG0680032558.01.T01:CDS 40.0%
! GCATTAGAAAAGAGTGCAGA+AGG - Chr6:44674976-44674995 None:intergenic 40.0%
! GCCTTTTCATAGATGGAAAC+TGG + Chr6:44677156-44677175 MsG0680032558.01.T01:three_prime_UTR 40.0%
! TGGATCCCTGACTTGAAATA+TGG - Chr6:44675432-44675451 None:intergenic 40.0%
! TGTCTAGAATGCGTGTATGT+TGG + Chr6:44676449-44676468 MsG0680032558.01.T01:intron 40.0%
ACACTCCATCAAGAGCAAAG+TGG - Chr6:44675700-44675719 None:intergenic 45.0%
AGATGAAGCAAATGCACGTC+AGG - Chr6:44674620-44674639 None:intergenic 45.0%
ATCTCGGCAGAATGCAATCA+AGG + Chr6:44675610-44675629 MsG0680032558.01.T01:CDS 45.0%
ATGAAGCAAATGCACGTCAG+GGG - Chr6:44674618-44674637 None:intergenic 45.0%
CCATGCAGTCACTAGTTGTT+AGG + Chr6:44676276-44676295 MsG0680032558.01.T01:intron 45.0%
CCTAACAACTAGTGACTGCA+TGG - Chr6:44676279-44676298 None:intergenic 45.0%
CGCATAATCCATGATGTTGC+AGG - Chr6:44676834-44676853 None:intergenic 45.0%
GATGAAGCAAATGCACGTCA+GGG - Chr6:44674619-44674638 None:intergenic 45.0%
GATTTATACGCCCACCCAAA+CGG - Chr6:44676909-44676928 None:intergenic 45.0%
GCACACTCCATTGCATATCT+TGG - Chr6:44676651-44676670 None:intergenic 45.0%
GCCGTTCAATGAGGATTGAA+TGG + Chr6:44676324-44676343 MsG0680032558.01.T01:intron 45.0%
GGAAACCACTTTGCTCTTGA+TGG + Chr6:44675692-44675711 MsG0680032558.01.T01:CDS 45.0%
GTACATATCGAACGGTACAC+TGG + Chr6:44676299-44676318 MsG0680032558.01.T01:intron 45.0%
TCTAGCATCAGTGTGAACGT+GGG + Chr6:44676983-44677002 MsG0680032558.01.T01:three_prime_UTR 45.0%
TGGAACTGTTCACGAGATGA+AGG + Chr6:44675231-44675250 MsG0680032558.01.T01:CDS 45.0%
TTCTAGCATCAGTGTGAACG+TGG + Chr6:44676982-44677001 MsG0680032558.01.T01:three_prime_UTR 45.0%
TTGACTCCACGATAGTTAGC+TGG + Chr6:44674812-44674831 MsG0680032558.01.T01:intron 45.0%
! ATGCTGTGTTTGGAATTGCG+TGG - Chr6:44677021-44677040 None:intergenic 45.0%
ACCTATCCCAGGTGCTCAAA+TGG + Chr6:44675452-44675471 MsG0680032558.01.T01:CDS 50.0%
ACTCTTAGCTTCCGTTTGGG+TGG + Chr6:44676895-44676914 MsG0680032558.01.T01:three_prime_UTR 50.0%
CATATCGAACGGTACACTGG+TGG + Chr6:44676302-44676321 MsG0680032558.01.T01:intron 50.0%
CATCAGTGTGAACGTGGGTT+TGG + Chr6:44676988-44677007 MsG0680032558.01.T01:three_prime_UTR 50.0%
CTCTTAGCTTCCGTTTGGGT+GGG + Chr6:44676896-44676915 MsG0680032558.01.T01:three_prime_UTR 50.0%
GCAAACTCAGTCTTGCTCCA+AGG - Chr6:44676720-44676739 None:intergenic 50.0%
TGAAGCAAATGCACGTCAGG+GGG - Chr6:44674617-44674636 None:intergenic 50.0%
TGCGTGTATGTTGGATCCCT+TGG + Chr6:44676458-44676477 MsG0680032558.01.T01:intron 50.0%
TTTGAGCACCTGGGATAGGT+TGG - Chr6:44675452-44675471 None:intergenic 50.0%
ACACTGGTGGCCGTTCAATG+AGG + Chr6:44676315-44676334 MsG0680032558.01.T01:intron 55.0%
ACTAGTGACTGCATGGGAGC+CGG - Chr6:44676272-44676291 None:intergenic 55.0%
ATGTTGGATCCCTTGGCTGC+AGG + Chr6:44676465-44676484 MsG0680032558.01.T01:intron 55.0%
ATTCGGATTCCCTGCAGCCA+AGG - Chr6:44676478-44676497 None:intergenic 55.0%
CAGTGTGAACGTGGGTTTGG+TGG + Chr6:44676991-44677010 MsG0680032558.01.T01:three_prime_UTR 55.0%
GCAATGGAGTGTGCTGAAGC+CGG + Chr6:44676657-44676676 MsG0680032558.01.T01:CDS 55.0%
GCCATTTGAGCACCTGGGAT+AGG - Chr6:44675456-44675475 None:intergenic 55.0%
TCAGGGATCCAACCTATCCC+AGG + Chr6:44675441-44675460 MsG0680032558.01.T01:CDS 55.0%
TGTTGGATCCCTTGGCTGCA+GGG + Chr6:44676466-44676485 MsG0680032558.01.T01:intron 55.0%
TTCGGATTCCCTGCAGCCAA+GGG - Chr6:44676477-44676496 None:intergenic 55.0%
ATCTCTTCGGCCGGCGAAGA+AGG + Chr6:44677210-44677229 MsG0680032558.01.T01:three_prime_UTR 60.0%
CTAGTGACTGCATGGGAGCC+GGG - Chr6:44676271-44676290 None:intergenic 60.0%
GCAGGGCCATTTGAGCACCT+GGG - Chr6:44675461-44675480 None:intergenic 60.0%
TCTTCGCCCACCTTCTTCGC+CGG - Chr6:44677223-44677242 None:intergenic 60.0%
TGCAGGGCCATTTGAGCACC+TGG - Chr6:44675462-44675481 None:intergenic 60.0%
CTTCGGCCGGCGAAGAAGGT+GGG + Chr6:44677214-44677233 MsG0680032558.01.T01:three_prime_UTR 65.0%
GGCGAAGAAGGTGGGCGAAG+AGG + Chr6:44677222-44677241 MsG0680032558.01.T01:three_prime_UTR 65.0%
TCTTCGGCCGGCGAAGAAGG+TGG + Chr6:44677213-44677232 MsG0680032558.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 44674584 44677461 44674584 ID=MsG0680032558.01;Name=MsG0680032558.01
Chr6 mRNA 44674584 44677461 44674584 ID=MsG0680032558.01.T01;Parent=MsG0680032558.01;Name=MsG0680032558.01.T01;_AED=0.36;_eAED=0.38;_QI=0|0.75|0.8|1|0.75|0.6|5|643|221
Chr6 exon 44674584 44674763 44674584 ID=MsG0680032558.01.T01:exon:11892;Parent=MsG0680032558.01.T01
Chr6 exon 44675228 44675252 44675228 ID=MsG0680032558.01.T01:exon:11893;Parent=MsG0680032558.01.T01
Chr6 exon 44675397 44675517 44675397 ID=MsG0680032558.01.T01:exon:11894;Parent=MsG0680032558.01.T01
Chr6 exon 44675610 44675744 44675610 ID=MsG0680032558.01.T01:exon:11895;Parent=MsG0680032558.01.T01
Chr6 exon 44676614 44677461 44676614 ID=MsG0680032558.01.T01:exon:11896;Parent=MsG0680032558.01.T01
Chr6 CDS 44674584 44674763 44674584 ID=MsG0680032558.01.T01:cds;Parent=MsG0680032558.01.T01
Chr6 CDS 44675228 44675252 44675228 ID=MsG0680032558.01.T01:cds;Parent=MsG0680032558.01.T01
Chr6 CDS 44675397 44675517 44675397 ID=MsG0680032558.01.T01:cds;Parent=MsG0680032558.01.T01
Chr6 CDS 44675610 44675744 44675610 ID=MsG0680032558.01.T01:cds;Parent=MsG0680032558.01.T01
Chr6 CDS 44676614 44676818 44676614 ID=MsG0680032558.01.T01:cds;Parent=MsG0680032558.01.T01
Chr6 three_prime_UTR 44676819 44677461 44676819 ID=MsG0680032558.01.T01:three_prime_utr;Parent=MsG0680032558.01.T01
Gene Sequence

>MsG0680032558.01.T01

ATGAATTCTAGGATTCTGCACTTTTATTCTCCCCCTGACGTGCATTTGCTTCATCTTCTTTTTTTTTATGCAGTATTAGGAAACTTCGTGTCAGCTCAGAACAACTTCATAGCAGATCGATACTCATCAAATTATTCAGTTTCTGAGTATCATGTGTACGAGTTCTTCAAGGTATCACCTATATGGAACTGTTCACGAGATGAAGCTAATAGTCGTGTTCATGAGTTTTTTGAGACACCATATTTCAAGTCAGGGATCCAACCTATCCCAGGTGCTCAAATGGCCCTGCAGAAATTATCAAGATTCTGTGACCTATCAATTGTAACATCTCGGCAGAATGCAATCAAGGACCATACAATTGAGTGGATAGAGAATAACTTTTCAGGATTGTTTGATGAGATTCACTTTGGAAACCACTTTGCTCTTGATGGAGTGTCAAGACCAAAGTCAGAGATTTGTAGGTCTTTAAATGCTAAGGTTCTTATTGATGATAACCCAAGATATGCAATGGAGTGTGCTGAAGCCGGAATTAGAGTCCTACTCTTCGATTATGAAAATTCGTATCCTTGGAGCAAGACTGAGTTTGCTTATCAACATCCTCTTGTGCACAAAGTTGAGAACTGGGAAGAAGTTGAACAAGAATTAATGTCATTGATAACTTTATAG
Protein sequence

>MsG0680032558.01.T01

MNSRILHFYSPPDVHLLHLLFFYAVLGNFVSAQNNFIADRYSSNYSVSEYHVYEFFKVSPIWNCSRDEANSRVHEFFETPYFKSGIQPIPGAQMALQKLSRFCDLSIVTSRQNAIKDHTIEWIENNFSGLFDEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAMECAEAGIRVLLFDYENSYPWSKTEFAYQHPLVHKVENWEEVEQELMSLITL*