AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010980.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010980.01.T01 MTR_7g029510 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_7g099610 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_5g063620 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_4g061827 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_4g061920 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g462400 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g054380 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g462730 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g462510 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g070920 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g061440 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_3g462410 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_2g096100 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_8g038460 100.000 103 0 0 1 103 1 103 4.97e-68 204
MsG0280010980.01.T01 MTR_4g128150 100.000 102 0 0 1 102 1 102 1.71e-65 206
MsG0280010980.01.T01 MTR_2g096110 61.321 106 19 2 124 209 37 140 3.41e-33 116
MsG0280010980.01.T01 MTR_7g029520 84.000 50 8 0 27 76 1 50 1.76e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010980.01.T01 AT5G59970 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT5G59690 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT5G59970 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT3G46320 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT3G45930 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT3G53730 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT2G28740 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT1G07660 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT1G07820 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT1G07820 100.000 103 0 0 1 103 1 103 5.20e-68 204
MsG0280010980.01.T01 AT1G07660 83.495 103 0 1 1 103 1 86 1.19e-50 159

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAAGGAAGGACTCTTTA+TGG 0.217305 2:+77892280 MsG0280010980.01.T01:CDS
GGAAGGACTCTTTATGGATT+TGG 0.266178 2:+77892286 MsG0280010980.01.T01:CDS
GAAGGACTCTTTATGGATTT+GGG 0.322097 2:+77892287 MsG0280010980.01.T01:CDS
CCTACTGGTTTCCAGTTTGC+TGG 0.337292 2:+77894610 MsG0280010980.01.T01:CDS
AAGCTGAGAAAAGTGGAATT+TGG 0.359555 2:+77893680 MsG0280010980.01.T01:CDS
CAACGGCATTGGTATCTCTA+TGG 0.371115 2:+77894353 MsG0280010980.01.T01:CDS
TTGAGTAACAGTGGAGAGTT+TGG 0.373134 2:-77894638 None:intergenic
GAAGCCTGCGATTCGTCGTT+TGG 0.391757 2:+77892096 MsG0280010980.01.T01:CDS
TGGAAAAGGTGGAAAGGGAT+TGG 0.405096 2:+77892015 MsG0280010980.01.T01:CDS
TTGTTGCGAATCAAGATGTC+TGG 0.418777 2:+77891989 None:intergenic
GTTTGGTGTTGCCAGCAAAC+TGG 0.426332 2:-77894621 None:intergenic
GGAAAAGGTGGAAAGGGATT+GGG 0.428595 2:+77892016 MsG0280010980.01.T01:CDS
AGAGCAGAAGTGGGAGTGAA+AGG 0.437095 2:+77894378 MsG0280010980.01.T01:CDS
GGAAAGGGATTGGGAAAGGG+AGG 0.438545 2:+77892025 MsG0280010980.01.T01:CDS
AAGATGTCTGGACGTGGAAA+AGG 0.490201 2:+77892001 None:intergenic
TTTCCAGCTCTCAACGGCAT+TGG 0.490815 2:+77894342 MsG0280010980.01.T01:intron
CTCTATGGTTAGAGCAGAAG+TGG 0.492584 2:+77894368 MsG0280010980.01.T01:CDS
GGTGGAAAGGGATTGGGAAA+GGG 0.496399 2:+77892022 MsG0280010980.01.T01:CDS
TTCACCACTGAAAATCCTAC+TGG 0.499712 2:+77894595 MsG0280010980.01.T01:CDS
GTGCTTCGTGATAACATTCA+AGG 0.499787 2:+77892067 MsG0280010980.01.T01:CDS
AGGTGGAAAGGGATTGGGAA+AGG 0.506594 2:+77892021 MsG0280010980.01.T01:CDS
GAGAAAGACTGTTACTGCTA+TGG 0.515154 2:+77892237 MsG0280010980.01.T01:CDS
ATTGTGAAAGCTGAGAAAAG+TGG 0.540391 2:+77893673 MsG0280010980.01.T01:CDS
TGTTATCACGAAGCACCTTA+CGG 0.542642 2:-77892060 None:intergenic
CAACATAATGTGTGTGCATA+GGG 0.544003 2:-77894407 None:intergenic
CGAATCAAGATGTCTGGACG+TGG 0.544605 2:+77891995 None:intergenic
TTACTTACACAGAGCACGCT+AGG 0.553235 2:+77892215 MsG0280010980.01.T01:CDS
CGTCGTTTGGCACGTAGAGG+AGG 0.553789 2:+77892109 MsG0280010980.01.T01:CDS
GTGGCAGCTGAGCTTACAGA+TGG 0.555692 2:+77894450 MsG0280010980.01.T01:CDS
GGACGTGGAAAAGGTGGAAA+GGG 0.559725 2:+77892010 MsG0280010980.01.T01:CDS
AGGAGCAAAACGACACCGTA+AGG 0.575994 2:+77892045 MsG0280010980.01.T01:CDS
CGTGCCAAACGACGAATCGC+AGG 0.582056 2:-77892100 None:intergenic
GGAGAATGTTATTCGTGATG+CGG 0.582811 2:+77892192 MsG0280010980.01.T01:CDS
ATGTCTGGACGTGGAAAAGG+TGG 0.583297 2:+77892004 MsG0280010980.01.T01:CDS
TGGACGTGGAAAAGGTGGAA+AGG 0.597841 2:+77892009 MsG0280010980.01.T01:CDS
GCAACATAATGTGTGTGCAT+AGG 0.598488 2:-77894408 None:intergenic
GGAATTTGGAGAAATGCTGC+AGG 0.601939 2:+77893694 MsG0280010980.01.T01:CDS
ATGCTTTGAAGAGACAAGGA+AGG 0.603293 2:+77892269 MsG0280010980.01.T01:CDS
AAGGACTCTTTATGGATTTG+GGG 0.603730 2:+77892288 MsG0280010980.01.T01:CDS
ATTCGTCGTTTGGCACGTAG+AGG 0.619364 2:+77892106 MsG0280010980.01.T01:CDS
GGAGGAGTGAAGCGTATCAG+CGG 0.620100 2:+77892127 MsG0280010980.01.T01:CDS
GTTTATGCTTTGAAGAGACA+AGG 0.627217 2:+77892265 MsG0280010980.01.T01:CDS
CCAGCAAACTGGAAACCAGT+AGG 0.632847 2:-77894610 None:intergenic
AGTAACTTTCCAGCTCTCAA+CGG 0.641559 2:+77894336 MsG0280010980.01.T01:intron
AGGACTCTTTATGGATTTGG+GGG 0.645439 2:+77892289 MsG0280010980.01.T01:CDS
GTCATCCGGTGCCAGAACAG+CGG 0.649621 2:+77894558 MsG0280010980.01.T01:intron
GCGGGTGTGTAATTGAACAT+TGG 0.656924 2:+77893632 MsG0280010980.01.T01:CDS
TCTATGGTTAGAGCAGAAGT+GGG 0.669659 2:+77894369 MsG0280010980.01.T01:CDS
TTGATCTACGAAGAGACACG+TGG 0.703849 2:+77892151 MsG0280010980.01.T01:CDS
TGGCAGCTGAGCTTACAGAT+GGG 0.738503 2:+77894451 MsG0280010980.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATGAAAAAGATTA+TGG + Chr2:77893863-77893882 MsG0280010980.01.T01:intron 10.0%
!! ATTAATTATTAATAAATGTG+AGG - Chr2:77893852-77893871 None:intergenic 10.0%
!! TTATAATTAAAAGTGATTAT+GGG + Chr2:77892350-77892369 MsG0280010980.01.T01:intron 10.0%
!! TTTATAATTAAAAGTGATTA+TGG + Chr2:77892349-77892368 MsG0280010980.01.T01:intron 10.0%
!! GAAATTAAATTGAATAATAC+TGG + Chr2:77893095-77893114 MsG0280010980.01.T01:intron 15.0%
!!! ATAATTAGTTTAAATGTCAT+CGG + Chr2:77893797-77893816 MsG0280010980.01.T01:intron 15.0%
!!! TTTTTTTTTTCTTCACAAAT+GGG + Chr2:77892956-77892975 MsG0280010980.01.T01:intron 15.0%
!!! TTTTTTTTTTTCTTCACAAA+TGG + Chr2:77892955-77892974 MsG0280010980.01.T01:intron 15.0%
!! GATGACATTTAAACTAATTA+TGG - Chr2:77893798-77893817 None:intergenic 20.0%
!! TTGTTAAAAACTCATTTCAA+AGG + Chr2:77893753-77893772 MsG0280010980.01.T01:intron 20.0%
!!! TGTCTATTTTCTATTGTTAA+TGG + Chr2:77892559-77892578 MsG0280010980.01.T01:intron 20.0%
!!! TTTTTTTAGGTTAAGGATTT+AGG + Chr2:77892433-77892452 MsG0280010980.01.T01:intron 20.0%
! AATAACATTCTCATTCAATC+AGG - Chr2:77892876-77892895 None:intergenic 25.0%
! AATTAAAAGTGATTATGGGT+TGG + Chr2:77892354-77892373 MsG0280010980.01.T01:intron 25.0%
! AGTAAATTGAATTGTTCCAA+TGG - Chr2:77893130-77893149 None:intergenic 25.0%
! ATAGGTAGTTAACTATTTCA+TGG + Chr2:77892473-77892492 MsG0280010980.01.T01:intron 25.0%
! ATCACACATTCAATTTGTAA+TGG + Chr2:77894039-77894058 MsG0280010980.01.T01:intron 25.0%
! ATTAAAAGTGATTATGGGTT+GGG + Chr2:77892355-77892374 MsG0280010980.01.T01:intron 25.0%
! ATTATGGATATTTCATGCTA+AGG - Chr2:77893782-77893801 None:intergenic 25.0%
! ATTCCATATATGATGAATTG+AGG - Chr2:77892666-77892685 None:intergenic 25.0%
! GTAAATTGAATTGTTCCAAT+GGG - Chr2:77893129-77893148 None:intergenic 25.0%
! GTGTATTGAAAATGTATATG+AGG + Chr2:77893610-77893629 MsG0280010980.01.T01:intron 25.0%
! TATATTCACAGCAATTTGAT+AGG - Chr2:77892618-77892637 None:intergenic 25.0%
! TATTGAAAATGTATATGAGG+CGG + Chr2:77893613-77893632 MsG0280010980.01.T01:intron 25.0%
! TCTATTGTTAATGGTCTATT+TGG + Chr2:77892568-77892587 MsG0280010980.01.T01:intron 25.0%
! TGCAAAATTCTTAGTAAACT+TGG - Chr2:77892831-77892850 None:intergenic 25.0%
! TTCACAACTTAAGATGTTTA+AGG - Chr2:77892912-77892931 None:intergenic 25.0%
! TTCCATATATGATGAATTGA+GGG - Chr2:77892665-77892684 None:intergenic 25.0%
! TTTGAAAAAACTATTAGAGC+TGG + Chr2:77894495-77894514 MsG0280010980.01.T01:intron 25.0%
!! GAAATGAGTTTTTAACAATG+AGG - Chr2:77893751-77893770 None:intergenic 25.0%
!! GAGTAATTATCTTTTGTGAT+AGG + Chr2:77892455-77892474 MsG0280010980.01.T01:intron 25.0%
!! TTTAGCTTAAATGTAACTCT+CGG - Chr2:77893540-77893559 None:intergenic 25.0%
!!! AATTTAGGTGGTGTTTTTTT+AGG + Chr2:77892420-77892439 MsG0280010980.01.T01:intron 25.0%
AACATTTCAGTACCAAAGAT+TGG - Chr2:77892705-77892724 None:intergenic 30.0%
AACCCTCAATTCATCATATA+TGG + Chr2:77892660-77892679 MsG0280010980.01.T01:intron 30.0%
AACCTAAAACATCATTTGTC+AGG - Chr2:77892747-77892766 None:intergenic 30.0%
AACTTAATTCCAAACAGACA+GGG - Chr2:77893171-77893190 None:intergenic 30.0%
AATTAAGTTCTTGTGAATGC+AGG + Chr2:77893182-77893201 MsG0280010980.01.T01:intron 30.0%
AATTGAATGTGTGATGACAA+AGG - Chr2:77894034-77894053 None:intergenic 30.0%
ACAATTGTATATGCTAACAG+AGG - Chr2:77893970-77893989 None:intergenic 30.0%
AGATTTCTAAATTCTCCAGA+TGG - Chr2:77893024-77893043 None:intergenic 30.0%
ATGGAAAAATATGGGAAACA+CGG - Chr2:77893005-77893024 None:intergenic 30.0%
ATGTGAGGAGATTAACAAAA+AGG - Chr2:77893837-77893856 None:intergenic 30.0%
ATTCTCCAGATGGAAAAATA+TGG - Chr2:77893014-77893033 None:intergenic 30.0%
ATTGAAAATGTATATGAGGC+GGG + Chr2:77893614-77893633 MsG0280010980.01.T01:intron 30.0%
GATGTTATTGTGTTTCCTAA+AGG + Chr2:77894519-77894538 MsG0280010980.01.T01:intron 30.0%
GTAAACTTGGAATATTGCAT+TGG - Chr2:77892818-77892837 None:intergenic 30.0%
GTTTACATGCATAACAAGAA+GGG - Chr2:77894207-77894226 None:intergenic 30.0%
TAGTGCAGCTATAAATTTCA+TGG + Chr2:77893944-77893963 MsG0280010980.01.T01:intron 30.0%
TCTGGAGAATTTAGAAATCT+AGG + Chr2:77893024-77893043 MsG0280010980.01.T01:intron 30.0%
TCTTTACTGTAACCAATCTT+TGG + Chr2:77892690-77892709 MsG0280010980.01.T01:intron 30.0%
TTCTCCAGATGGAAAAATAT+GGG - Chr2:77893013-77893032 None:intergenic 30.0%
TTTACATGCATAACAAGAAG+GGG - Chr2:77894206-77894225 None:intergenic 30.0%
! ACTAATTTTCTGTGTAAGAG+AGG - Chr2:77893928-77893947 None:intergenic 30.0%
! CATCTTAAGTTGTGAAATTG+AGG + Chr2:77892916-77892935 MsG0280010980.01.T01:intron 30.0%
! TATTTGGTTTCTTATACTCC+AGG + Chr2:77892584-77892603 MsG0280010980.01.T01:intron 30.0%
! TTCCTGACAAATGATGTTTT+AGG + Chr2:77892742-77892761 MsG0280010980.01.T01:intron 30.0%
!! AGTTGTTTTCTTGAAGTAAG+TGG + Chr2:77893050-77893069 MsG0280010980.01.T01:intron 30.0%
AAACCAGAAACAGGATAAGA+TGG - Chr2:77893506-77893525 None:intergenic 35.0%
AACAATGAGCCTCATAGTTA+AGG + Chr2:77893456-77893475 MsG0280010980.01.T01:intron 35.0%
AAGCTGAGAAAAGTGGAATT+TGG + Chr2:77893680-77893699 MsG0280010980.01.T01:CDS 35.0%
AAGGACTCTTTATGGATTTG+GGG + Chr2:77892288-77892307 MsG0280010980.01.T01:CDS 35.0%
AAGGGTAAACCTTAACTATG+AGG - Chr2:77893468-77893487 None:intergenic 35.0%
ACTTAATTCCAAACAGACAG+GGG - Chr2:77893170-77893189 None:intergenic 35.0%
ATACTGGAAAACAATCCCAT+TGG + Chr2:77893111-77893130 MsG0280010980.01.T01:intron 35.0%
ATTGTGAAAGCTGAGAAAAG+TGG + Chr2:77893673-77893692 MsG0280010980.01.T01:CDS 35.0%
CAACATAATGTGTGTGCATA+GGG - Chr2:77894410-77894429 None:intergenic 35.0%
CAAGGTTTGTGGTTGAATTT+AGG + Chr2:77892405-77892424 MsG0280010980.01.T01:intron 35.0%
CACCATGATCAAAAATTCTG+TGG - Chr2:77894433-77894452 None:intergenic 35.0%
CAGCAATTTGATAGGCTATT+AGG - Chr2:77892610-77892629 None:intergenic 35.0%
GAAAGAAACAAACCAGAAAC+AGG - Chr2:77893515-77893534 None:intergenic 35.0%
GAACTTAATTCCAAACAGAC+AGG - Chr2:77893172-77893191 None:intergenic 35.0%
GAAGGACTCTTTATGGATTT+GGG + Chr2:77892287-77892306 MsG0280010980.01.T01:CDS 35.0%
GGTTTACATGCATAACAAGA+AGG - Chr2:77894208-77894227 None:intergenic 35.0%
TGGAAAAATATGGGAAACAC+GGG - Chr2:77893004-77893023 None:intergenic 35.0%
! AATGTCTTTGCTGTCCATAA+TGG - Chr2:77893401-77893420 None:intergenic 35.0%
! CACAGAATTTTTGATCATGG+TGG + Chr2:77894431-77894450 MsG0280010980.01.T01:CDS 35.0%
! GTTTCCCATATTTTTCCATC+TGG + Chr2:77893006-77893025 MsG0280010980.01.T01:intron 35.0%
! TGCCACAGAATTTTTGATCA+TGG + Chr2:77894428-77894447 MsG0280010980.01.T01:CDS 35.0%
!! AAACGAAATCATTGACTCTC+AGG - Chr2:77894240-77894259 None:intergenic 35.0%
!! AGAAATTTTGGCAAGGTTTG+TGG + Chr2:77892394-77892413 MsG0280010980.01.T01:intron 35.0%
!! GTCTTGCTGTCAAGAAATTT+TGG + Chr2:77892382-77892401 MsG0280010980.01.T01:intron 35.0%
!! GTTTATGCTTTGAAGAGACA+AGG + Chr2:77892265-77892284 MsG0280010980.01.T01:CDS 35.0%
!! TTGCAATGGTGTTACTCATT+GGG + Chr2:77893208-77893227 MsG0280010980.01.T01:intron 35.0%
!!! GGTGGTGTTTTTTTAGGTTA+AGG + Chr2:77892426-77892445 MsG0280010980.01.T01:intron 35.0%
AAAGACATTATGCAGCAGCT+GGG + Chr2:77893412-77893431 MsG0280010980.01.T01:intron 40.0%
AAAGTTACTCATCACTGCCA+GGG - Chr2:77894325-77894344 None:intergenic 40.0%
AATTTACTGCTGCATGATCC+AGG + Chr2:77893142-77893161 MsG0280010980.01.T01:intron 40.0%
AGACAAGGAAGGACTCTTTA+TGG + Chr2:77892280-77892299 MsG0280010980.01.T01:CDS 40.0%
AGCTTAAATGTAACTCTCGG+TGG - Chr2:77893537-77893556 None:intergenic 40.0%
AGGAAATGCACGTATCCTTT+AGG - Chr2:77894537-77894556 None:intergenic 40.0%
AGGACTCTTTATGGATTTGG+GGG + Chr2:77892289-77892308 MsG0280010980.01.T01:CDS 40.0%
AGTAACTTTCCAGCTCTCAA+CGG + Chr2:77894336-77894355 MsG0280010980.01.T01:intron 40.0%
ATGGTTGAGCAAACAACAGA+AGG - Chr2:77893487-77893506 None:intergenic 40.0%
ATTTGATAGGCTATTAGGCC+TGG - Chr2:77892605-77892624 None:intergenic 40.0%
CAACCATCTTATCCTGTTTC+TGG + Chr2:77893500-77893519 MsG0280010980.01.T01:intron 40.0%
CTTTATGGATTTGGGGGTTA+GGG + Chr2:77892295-77892314 MsG0280010980.01.T01:intron 40.0%
GAGAAAGACTGTTACTGCTA+TGG + Chr2:77892237-77892256 MsG0280010980.01.T01:CDS 40.0%
GCAAAAGCTTCAGAAAGAGT+AGG - Chr2:77893288-77893307 None:intergenic 40.0%
GCAACATAATGTGTGTGCAT+AGG - Chr2:77894411-77894430 None:intergenic 40.0%
GGAAGGACTCTTTATGGATT+TGG + Chr2:77892286-77892305 MsG0280010980.01.T01:CDS 40.0%
GGAGAATGTTATTCGTGATG+CGG + Chr2:77892192-77892211 MsG0280010980.01.T01:CDS 40.0%
GGTTTGTGGTTGAATTTAGG+TGG + Chr2:77892408-77892427 MsG0280010980.01.T01:intron 40.0%
GTAAGCTTGACATGGTTGAA+TGG - Chr2:77894303-77894322 None:intergenic 40.0%
GTGCTTCGTGATAACATTCA+AGG + Chr2:77892067-77892086 MsG0280010980.01.T01:CDS 40.0%
TCTATGGTTAGAGCAGAAGT+GGG + Chr2:77894369-77894388 MsG0280010980.01.T01:CDS 40.0%
TCTTTATGGATTTGGGGGTT+AGG + Chr2:77892294-77892313 MsG0280010980.01.T01:intron 40.0%
TGGTTGAGCAAACAACAGAA+GGG - Chr2:77893486-77893505 None:intergenic 40.0%
TTCACCACTGAAAATCCTAC+TGG + Chr2:77894595-77894614 MsG0280010980.01.T01:CDS 40.0%
TTGAGTAACAGTGGAGAGTT+TGG - Chr2:77894641-77894660 None:intergenic 40.0%
TTTCCTCTGTACTACTTCGT+TGG - Chr2:77893250-77893269 None:intergenic 40.0%
! ATTTTCTGTGTAAGAGAGGC+AGG - Chr2:77893924-77893943 None:intergenic 40.0%
! GAAACCAGTAGGATTTTCAG+TGG - Chr2:77894602-77894621 None:intergenic 40.0%
! TGGCGTGTTGAAGATCTTTT+TGG + Chr2:77892171-77892190 MsG0280010980.01.T01:CDS 40.0%
! TGTTATCACGAAGCACCTTA+CGG - Chr2:77892063-77892082 None:intergenic 40.0%
! TTGACTCTCAGGTTTTCTGT+TGG - Chr2:77894229-77894248 None:intergenic 40.0%
! TTTGCGAAGGTTAGTCGAAT+AGG - Chr2:77894011-77894030 None:intergenic 40.0%
!! AGCTGTCTTTTGAGTAACAG+TGG - Chr2:77894650-77894669 None:intergenic 40.0%
!! ATGCTTTGAAGAGACAAGGA+AGG + Chr2:77892269-77892288 MsG0280010980.01.T01:CDS 40.0%
!! CTTGGAATATTGCATTGGCT+AGG - Chr2:77892813-77892832 None:intergenic 40.0%
!! GCTGTCAAGAAATTTTGGCA+AGG + Chr2:77892387-77892406 MsG0280010980.01.T01:intron 40.0%
!! GTTGCAATGGTGTTACTCAT+TGG + Chr2:77893207-77893226 MsG0280010980.01.T01:intron 40.0%
!! TTCTGGGATTGTAACAGTGT+TGG - Chr2:77894183-77894202 None:intergenic 40.0%
!!! TCTTTCTGAAGCTTTTGCCA+TGG + Chr2:77893290-77893309 MsG0280010980.01.T01:intron 40.0%
ACGTGCATTTCCTTGTCATC+CGG + Chr2:77894544-77894563 MsG0280010980.01.T01:intron 45.0%
AGACCAACGAAGTAGTACAG+AGG + Chr2:77893244-77893263 MsG0280010980.01.T01:intron 45.0%
AGACTCCTGTCTATCTTAGG+GGG - Chr2:77893728-77893747 None:intergenic 45.0%
AGCCATTGACCTTGCCATTA+TGG + Chr2:77893384-77893403 MsG0280010980.01.T01:intron 45.0%
AGGAGACTCCTGTCTATCTT+AGG - Chr2:77893731-77893750 None:intergenic 45.0%
ATAAGCCCCCTAAGATAGAC+AGG + Chr2:77893720-77893739 MsG0280010980.01.T01:intron 45.0%
CAAAGACATTATGCAGCAGC+TGG + Chr2:77893411-77893430 MsG0280010980.01.T01:intron 45.0%
CTCTATGGTTAGAGCAGAAG+TGG + Chr2:77894368-77894387 MsG0280010980.01.T01:CDS 45.0%
GAAAGTTACTCATCACTGCC+AGG - Chr2:77894326-77894345 None:intergenic 45.0%
GACATGGTTGAATGGTTCGA+TGG - Chr2:77894295-77894314 None:intergenic 45.0%
GAGACTCCTGTCTATCTTAG+GGG - Chr2:77893729-77893748 None:intergenic 45.0%
GCATAACAAGAAGGGGTTCT+GGG - Chr2:77894199-77894218 None:intergenic 45.0%
GCGGGTGTGTAATTGAACAT+TGG + Chr2:77893632-77893651 MsG0280010980.01.T01:CDS 45.0%
GGAAAAGGTGGAAAGGGATT+GGG + Chr2:77892016-77892035 MsG0280010980.01.T01:CDS 45.0%
GGAATTTGGAGAAATGCTGC+AGG + Chr2:77893694-77893713 MsG0280010980.01.T01:CDS 45.0%
GGAGACTCCTGTCTATCTTA+GGG - Chr2:77893730-77893749 None:intergenic 45.0%
GGTACAGATTGCAGTACAAG+AGG - Chr2:77892983-77893002 None:intergenic 45.0%
GTCCATAATGGCAAGGTCAA+TGG - Chr2:77893389-77893408 None:intergenic 45.0%
GTGATGACAAAGGTTTGCGA+AGG - Chr2:77894024-77894043 None:intergenic 45.0%
TGAAAAAGCAACCGCTGTTC+TGG - Chr2:77894572-77894591 None:intergenic 45.0%
TGCATAACAAGAAGGGGTTC+TGG - Chr2:77894200-77894219 None:intergenic 45.0%
TGCGGTGACTTCAAATAGCT+AGG + Chr2:77893313-77893332 MsG0280010980.01.T01:intron 45.0%
TGGAAAAGGTGGAAAGGGAT+TGG + Chr2:77892015-77892034 MsG0280010980.01.T01:CDS 45.0%
TTACTTACACAGAGCACGCT+AGG + Chr2:77892215-77892234 MsG0280010980.01.T01:CDS 45.0%
TTGATCTACGAAGAGACACG+TGG + Chr2:77892151-77892170 MsG0280010980.01.T01:CDS 45.0%
! CTTTGCTGTCCATAATGGCA+AGG - Chr2:77893396-77893415 None:intergenic 45.0%
! TATTTGAAGTCACCGCACCA+TGG - Chr2:77893310-77893329 None:intergenic 45.0%
!! CAACGGCATTGGTATCTCTA+TGG + Chr2:77894353-77894372 MsG0280010980.01.T01:CDS 45.0%
AAGGTCAATGGCTGCAAGCA+AGG - Chr2:77893377-77893396 None:intergenic 50.0%
AGAGAGGCAGGCAGAATATG+AGG - Chr2:77893912-77893931 None:intergenic 50.0%
AGAGCAGAAGTGGGAGTGAA+AGG + Chr2:77894378-77894397 MsG0280010980.01.T01:CDS 50.0%
AGCTGAGCTTACAGATGGGT+TGG + Chr2:77894455-77894474 MsG0280010980.01.T01:intron 50.0%
AGGAGCAAAACGACACCGTA+AGG + Chr2:77892045-77892064 MsG0280010980.01.T01:CDS 50.0%
AGGTGGAAAGGGATTGGGAA+AGG + Chr2:77892021-77892040 MsG0280010980.01.T01:CDS 50.0%
ATACCAATGCCGTTGAGAGC+TGG - Chr2:77894348-77894367 None:intergenic 50.0%
ATGGCTGCAAGCAAGGTCAA+TGG - Chr2:77893370-77893389 None:intergenic 50.0%
ATGTCTGGACGTGGAAAAGG+TGG + Chr2:77892004-77892023 MsG0280010980.01.T01:CDS 50.0%
ATTCGTCGTTTGGCACGTAG+AGG + Chr2:77892106-77892125 MsG0280010980.01.T01:CDS 50.0%
CAACCATGTCAAGCTTACCC+TGG + Chr2:77894305-77894324 MsG0280010980.01.T01:intron 50.0%
CCAGCAAACTGGAAACCAGT+AGG - Chr2:77894613-77894632 None:intergenic 50.0%
GGACGTGGAAAAGGTGGAAA+GGG + Chr2:77892010-77892029 MsG0280010980.01.T01:CDS 50.0%
GGTCAATGGCTGCAAAACAC+AGG - Chr2:77893356-77893375 None:intergenic 50.0%
GGTGGAAAGGGATTGGGAAA+GGG + Chr2:77892022-77892041 MsG0280010980.01.T01:CDS 50.0%
GTGAATGCAGGACGTTGCAA+TGG + Chr2:77893194-77893213 MsG0280010980.01.T01:intron 50.0%
TGGACGTGGAAAAGGTGGAA+AGG + Chr2:77892009-77892028 MsG0280010980.01.T01:CDS 50.0%
TGGCAGCTGAGCTTACAGAT+GGG + Chr2:77894451-77894470 MsG0280010980.01.T01:CDS 50.0%
TTTCCAGCTCTCAACGGCAT+TGG + Chr2:77894342-77894361 MsG0280010980.01.T01:intron 50.0%
! CTGAAGCTTTTGCCATGGTG+CGG + Chr2:77893295-77893314 MsG0280010980.01.T01:intron 50.0%
!! CCTACTGGTTTCCAGTTTGC+TGG + Chr2:77894610-77894629 MsG0280010980.01.T01:CDS 50.0%
!! GTTTGGTGTTGCCAGCAAAC+TGG - Chr2:77894624-77894643 None:intergenic 50.0%
CTGCCAGGGTAAGCTTGACA+TGG - Chr2:77894311-77894330 None:intergenic 55.0%
GAAGCCTGCGATTCGTCGTT+TGG + Chr2:77892096-77892115 MsG0280010980.01.T01:CDS 55.0%
GGAAAGGGATTGGGAAAGGG+AGG + Chr2:77892025-77892044 MsG0280010980.01.T01:CDS 55.0%
GGAGGAGTGAAGCGTATCAG+CGG + Chr2:77892127-77892146 MsG0280010980.01.T01:CDS 55.0%
GTGGCAGCTGAGCTTACAGA+TGG + Chr2:77894450-77894469 MsG0280010980.01.T01:CDS 55.0%
TCCAAACAGACAGGGGTTCC+TGG - Chr2:77893163-77893182 None:intergenic 55.0%
TCCAGGAACCCCTGTCTGTT+TGG + Chr2:77893159-77893178 MsG0280010980.01.T01:intron 55.0%
! TGTTCTGGCACCGGATGACA+AGG - Chr2:77894557-77894576 None:intergenic 55.0%
AGCAACCGCTGTTCTGGCAC+CGG - Chr2:77894566-77894585 None:intergenic 60.0%
CGTCGTTTGGCACGTAGAGG+AGG + Chr2:77892109-77892128 MsG0280010980.01.T01:CDS 60.0%
CGTGCCAAACGACGAATCGC+AGG - Chr2:77892103-77892122 None:intergenic 60.0%
! GTCATCCGGTGCCAGAACAG+CGG + Chr2:77894558-77894577 MsG0280010980.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 77892004 77894687 77892004 ID=MsG0280010980.01;Name=MsG0280010980.01
Chr2 mRNA 77892004 77894687 77892004 ID=MsG0280010980.01.T01;Parent=MsG0280010980.01;Name=MsG0280010980.01.T01;_AED=0.45;_eAED=0.60;_QI=0|0|0|1|1|1|4|0|209
Chr2 exon 77892004 77892310 77892004 ID=MsG0280010980.01.T01:exon:11532;Parent=MsG0280010980.01.T01
Chr2 exon 77893632 77893715 77893632 ID=MsG0280010980.01.T01:exon:11533;Parent=MsG0280010980.01.T01
Chr2 exon 77894349 77894472 77894349 ID=MsG0280010980.01.T01:exon:11534;Parent=MsG0280010980.01.T01
Chr2 exon 77894573 77894687 77894573 ID=MsG0280010980.01.T01:exon:11535;Parent=MsG0280010980.01.T01
Chr2 CDS 77892004 77892310 77892004 ID=MsG0280010980.01.T01:cds;Parent=MsG0280010980.01.T01
Chr2 CDS 77893632 77893715 77893632 ID=MsG0280010980.01.T01:cds;Parent=MsG0280010980.01.T01
Chr2 CDS 77894349 77894472 77894349 ID=MsG0280010980.01.T01:cds;Parent=MsG0280010980.01.T01
Chr2 CDS 77894573 77894687 77894573 ID=MsG0280010980.01.T01:cds;Parent=MsG0280010980.01.T01
Gene Sequence

>MsG0280010980.01.T01

ATGTCTGGACGTGGAAAAGGTGGAAAGGGATTGGGAAAGGGAGGAGCAAAACGACACCGTAAGGTGCTTCGTGATAACATTCAAGGAATAACGAAGCCTGCGATTCGTCGTTTGGCACGTAGAGGAGGAGTGAAGCGTATCAGCGGTTTGATCTACGAAGAGACACGTGGCGTGTTGAAGATCTTTTTGGAGAATGTTATTCGTGATGCGGTTACTTACACAGAGCACGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGGGGCGGGTGTGTAATTGAACATTGGATGACAATGAATTCTAGAATTGTGAAAGCTGAGAAAAGTGGAATTTGGAGAAATGCTGCAGCTCTCAACGGCATTGGTATCTCTATGGTTAGAGCAGAAGTGGGAGTGAAAGGAAGCTACCCTATGCACACACATTATGTTGCCACAGAATTTTTGATCATGGTGGCAGCTGAGCTTACAGATGGAACAGCGGTTGCTTTTTCAGCTTTCACCACTGAAAATCCTACTGGTTTCCAGTTTGCTGGCAACACCAAACTCTCCACTGTTACTCAAAAGACAGCTCTTCTTGATTTTGAATAA

Protein sequence

>MsG0280010980.01.T01

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGGCVIEHWMTMNSRIVKAEKSGIWRNAAALNGIGISMVRAEVGVKGSYPMHTHYVATEFLIMVAAELTDGTAVAFSAFTTENPTGFQFAGNTKLSTVTQKTALLDFE*