Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033466.01.T03 | RHN60028.1 | 55.298 | 302 | 83 | 3 | 1 | 252 | 194 | 493 | 4.57E-104 | 323 |
| MsG0680033466.01.T06 | PNX88183.1 | 67.416 | 178 | 57 | 1 | 1 | 178 | 222 | 398 | 6.80E-79 | 253 |
| MsG0680033466.01.T01 | PNY14043.1 | 45.89 | 292 | 47 | 3 | 1 | 181 | 146 | 437 | 1.57E-65 | 228 |
| MsG0680033466.01.T04 | PNX88183.1 | 63.542 | 288 | 71 | 2 | 1 | 255 | 149 | 435 | 4.65E-124 | 370 |
| MsG0680033466.01.T02 | RHN60028.1 | 60.265 | 302 | 86 | 3 | 1 | 270 | 194 | 493 | 2.54E-118 | 360 |
| MsG0680033466.01.T05 | PNX88183.1 | 63.542 | 288 | 70 | 2 | 1 | 254 | 149 | 435 | 8.58E-123 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033466.01.T01 | A0A2K3PFG8 | 45.890 | 292 | 47 | 3 | 1 | 181 | 146 | 437 | 7.52e-66 | 228 |
| MsG0680033466.01.T02 | A0A396I5I0 | 60.265 | 302 | 86 | 3 | 1 | 270 | 194 | 493 | 1.21e-118 | 360 |
| MsG0680033466.01.T03 | A0A396I5I0 | 55.298 | 302 | 83 | 3 | 1 | 252 | 194 | 493 | 2.18e-104 | 323 |
| MsG0680033466.01.T03 | A0A396JCT4 | 55.629 | 302 | 82 | 3 | 1 | 252 | 215 | 514 | 1.10e-100 | 329 |
| MsG0680033466.01.T04 | A0A2K3MBN1 | 63.542 | 288 | 71 | 2 | 1 | 255 | 149 | 435 | 2.22e-124 | 370 |
| MsG0680033466.01.T05 | A0A2K3MBN1 | 63.542 | 288 | 70 | 2 | 1 | 254 | 149 | 435 | 4.10e-123 | 367 |
| MsG0680033466.01.T06 | A0A2K3MBN1 | 67.416 | 178 | 57 | 1 | 1 | 178 | 222 | 398 | 3.25e-79 | 253 |
| MsG0680033466.01.T06 | A0A2K3PFG8 | 66.120 | 183 | 56 | 2 | 1 | 178 | 219 | 400 | 7.37e-76 | 259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002234.01 | MsG0680033466.01 | 0.836452 | 9.283730e-57 | 1.170467e-53 |
| MsG0180004914.01 | MsG0680033466.01 | 0.804389 | 2.211827e-49 | 1.138973e-46 |
| MsG0280006325.01 | MsG0680033466.01 | 0.821157 | 4.688269e-53 | 3.784535e-50 |
| MsG0380011574.01 | MsG0680033466.01 | 0.811296 | 7.517159e-51 | 4.635501e-48 |
| MsG0380011786.01 | MsG0680033466.01 | 0.812097 | 5.033152e-51 | 3.170780e-48 |
| MsG0380013883.01 | MsG0680033466.01 | 0.833516 | 5.098663e-56 | 5.885798e-53 |
| MsG0380013896.01 | MsG0680033466.01 | 0.852535 | 4.331666e-61 | 9.078646e-58 |
| MsG0680031380.01 | MsG0680033466.01 | 0.805857 | 1.090338e-49 | 5.831165e-47 |
| MsG0680032801.01 | MsG0680033466.01 | 0.806836 | 6.780217e-50 | 3.717927e-47 |
| MsG0680033466.01 | MsG0780037606.01 | 0.809378 | 1.949508e-50 | 1.142814e-47 |
| MsG0680033466.01 | MsG0780039282.01 | 0.845789 | 3.262874e-59 | 5.500212e-56 |
| MsG0680033466.01 | MsG0880044788.01 | 0.807924 | 3.984681e-50 | 2.247630e-47 |
| MsG0480018664.01 | MsG0680033466.01 | 0.823628 | 1.250227e-53 | 1.082346e-50 |
| MsG0480019482.01 | MsG0680033466.01 | 0.813990 | 1.934478e-51 | 1.282313e-48 |
| MsG0380014977.01 | MsG0680033466.01 | 0.835633 | 1.497780e-56 | 1.842193e-53 |
| MsG0380017312.01 | MsG0680033466.01 | 0.818841 | 1.587907e-52 | 1.201970e-49 |
| MsG0380017822.01 | MsG0680033466.01 | 0.815777 | 7.768733e-52 | 5.406538e-49 |
| MsG0580026222.01 | MsG0680033466.01 | 0.827187 | 1.796932e-54 | 1.722182e-51 |
| MsG0580026303.01 | MsG0680033466.01 | 0.816388 | 5.673088e-52 | 4.014374e-49 |
| MsG0580026631.01 | MsG0680033466.01 | 0.801841 | 7.444132e-49 | 3.591531e-46 |
| MsG0580028169.01 | MsG0680033466.01 | 0.801875 | 7.325452e-49 | 3.537440e-46 |
| MsG0580028170.01 | MsG0680033466.01 | 0.804624 | 1.975761e-49 | 1.023565e-46 |
| MsG0580029381.01 | MsG0680033466.01 | 0.822206 | 2.682098e-53 | 2.230049e-50 |
| MsG0280009248.01 | MsG0680033466.01 | 0.808251 | 3.395714e-50 | 1.932148e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033466.01.T03 | MTR_2g071820 | 88.095 | 42 | 5 | 0 | 211 | 252 | 399 | 440 | 3.63e-16 | 78.2 |
| MsG0680033466.01.T06 | MTR_2g071820 | 88.571 | 35 | 4 | 0 | 177 | 211 | 406 | 440 | 6.00e-13 | 67.4 |
| MsG0680033466.01.T01 | MTR_1056s0010 | 52.985 | 134 | 41 | 4 | 1 | 132 | 97 | 210 | 4.72e-37 | 127 |
| MsG0680033466.01.T01 | MTR_0113s0060 | 81.818 | 55 | 10 | 0 | 1 | 55 | 158 | 212 | 5.28e-25 | 100 |
| MsG0680033466.01.T01 | MTR_1914s0010 | 67.606 | 71 | 12 | 1 | 1 | 71 | 107 | 166 | 7.81e-25 | 96.3 |
| MsG0680033466.01.T01 | MTR_1g053380 | 80.000 | 55 | 11 | 0 | 1 | 55 | 165 | 219 | 2.08e-24 | 97.4 |
| MsG0680033466.01.T01 | MTR_0319s0020 | 79.245 | 53 | 11 | 0 | 3 | 55 | 182 | 234 | 3.85e-22 | 90.9 |
| MsG0680033466.01.T01 | MTR_8g447020 | 56.604 | 53 | 23 | 0 | 1 | 53 | 1 | 53 | 1.55e-14 | 65.9 |
| MsG0680033466.01.T04 | MTR_1056s0010 | 42.262 | 168 | 41 | 4 | 1 | 166 | 97 | 210 | 4.84e-31 | 114 |
| MsG0680033466.01.T04 | MTR_1914s0010 | 54.386 | 114 | 19 | 1 | 1 | 81 | 107 | 220 | 2.31e-29 | 110 |
| MsG0680033466.01.T04 | MTR_0319s0020 | 50.877 | 114 | 23 | 1 | 3 | 83 | 182 | 295 | 8.47e-25 | 100 |
| MsG0680033466.01.T04 | MTR_0113s0060 | 65.278 | 72 | 25 | 0 | 1 | 72 | 158 | 229 | 1.99e-24 | 101 |
| MsG0680033466.01.T04 | MTR_1g053380 | 54.000 | 100 | 13 | 1 | 1 | 67 | 165 | 264 | 2.02e-24 | 99.8 |
| MsG0680033466.01.T04 | MTR_8g447020 | 55.357 | 56 | 25 | 0 | 1 | 56 | 1 | 56 | 2.12e-15 | 69.7 |
| MsG0680033466.01.T04 | MTR_4g035700 | 36.000 | 125 | 62 | 4 | 13 | 119 | 47 | 171 | 4.30e-12 | 63.5 |
| MsG0680033466.01.T04 | MTR_0233s0050 | 34.343 | 99 | 61 | 2 | 160 | 254 | 13 | 111 | 7.36e-11 | 58.9 |
| MsG0680033466.01.T02 | MTR_2g071820 | 88.095 | 42 | 5 | 0 | 229 | 270 | 399 | 440 | 5.26e-16 | 77.8 |
| MsG0680033466.01.T05 | MTR_1056s0010 | 44.311 | 167 | 38 | 4 | 1 | 165 | 97 | 210 | 6.68e-33 | 119 |
| MsG0680033466.01.T05 | MTR_1914s0010 | 52.632 | 114 | 20 | 1 | 1 | 80 | 107 | 220 | 6.34e-27 | 104 |
| MsG0680033466.01.T05 | MTR_0113s0060 | 64.474 | 76 | 27 | 0 | 1 | 76 | 158 | 233 | 7.77e-26 | 105 |
| MsG0680033466.01.T05 | MTR_1g053380 | 76.271 | 59 | 14 | 0 | 1 | 59 | 165 | 223 | 9.41e-24 | 98.2 |
| MsG0680033466.01.T05 | MTR_0319s0020 | 50.877 | 114 | 22 | 2 | 3 | 82 | 182 | 295 | 3.92e-23 | 95.9 |
| MsG0680033466.01.T05 | MTR_8g447020 | 53.448 | 58 | 27 | 0 | 1 | 58 | 1 | 58 | 3.57e-14 | 66.6 |
| MsG0680033466.01.T05 | MTR_4g035700 | 36.800 | 125 | 60 | 3 | 13 | 118 | 47 | 171 | 3.80e-13 | 66.2 |
| MsG0680033466.01.T05 | MTR_0233s0050 | 34.343 | 99 | 61 | 2 | 159 | 253 | 13 | 111 | 8.38e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTTGTTGAAACAATTTA+TGG | 0.152613 | 6:-65959174 | None:intergenic |
| TCCGCTTCCGCTTCTTCTTC+TGG | 0.165344 | 6:-65959212 | None:intergenic |
| CCCCTAGCCAGGGTCTTCTT+TGG | 0.251596 | 6:-65958807 | None:intergenic |
| TGCTTCAAATGTGGAGAAAA+AGG | 0.269829 | 6:+65958636 | MsG0680033466.01.T05:CDS |
| GTATCTTTGATAGCAATTAA+AGG | 0.298414 | 6:-65958909 | None:intergenic |
| TTATCAGTTGGAGCACTATA+AGG | 0.309408 | 6:-65958549 | None:intergenic |
| GCAGGAGTCTCATTCTTCTT+AGG | 0.318547 | 6:-65958603 | None:intergenic |
| CACACATCAGGGAAAACTTC+TGG | 0.331948 | 6:-65959420 | None:intergenic |
| TTAATTGCTATCAAAGATAC+TGG | 0.379334 | 6:+65958912 | MsG0680033466.01.T05:CDS |
| TTGCTGCTGATTGTGCTTTG+AGG | 0.388792 | 6:+65958952 | MsG0680033466.01.T05:CDS |
| GGTAAGGTGTTTGCTTTAGC+TGG | 0.400087 | 6:+65958828 | MsG0680033466.01.T05:CDS |
| TCTCTCTCCGGTGGCACGTC+AGG | 0.408854 | 6:-65959383 | None:intergenic |
| TGTTTCCGTTGTGGCGTCAA+GGG | 0.413282 | 6:+65958699 | MsG0680033466.01.T05:CDS |
| CTTTGCTTGCCCTTATCAGT+TGG | 0.418898 | 6:-65958561 | None:intergenic |
| AGAGGAATGGATGTGATTCT+TGG | 0.418986 | 6:+65959122 | MsG0680033466.01.T05:CDS |
| TTATAGTGCTCCAACTGATA+AGG | 0.424591 | 6:+65958551 | MsG0680033466.01.T05:intron |
| ACAACCATCTCTCCATTCAT+TGG | 0.429144 | 6:-65958993 | None:intergenic |
| GGCACGTCAGGAATCTCATC+AGG | 0.433798 | 6:-65959371 | None:intergenic |
| GTCTTGTTGAAACAATTTAT+GGG | 0.437642 | 6:-65959173 | None:intergenic |
| TATAGTGCTCCAACTGATAA+GGG | 0.446894 | 6:+65958552 | MsG0680033466.01.T05:intron |
| CCAATAGCCTTCTTGATCTC+AGG | 0.451681 | 6:-65958402 | None:intergenic |
| CCTGAGATCAAGAAGGCTAT+TGG | 0.462930 | 6:+65958402 | MsG0680033466.01.T05:CDS |
| GTGTTTCCGTTGTGGCGTCA+AGG | 0.466280 | 6:+65958698 | MsG0680033466.01.T05:CDS |
| TTTAGCTAACTCCACGAACT+TGG | 0.470133 | 6:-65958310 | None:intergenic |
| TTGAAGCAGCTGATGCTTGA+TGG | 0.477232 | 6:+65959254 | MsG0680033466.01.T06:intron |
| CCTTTGTCTATGTACGGTAG+AGG | 0.478550 | 6:+65959068 | MsG0680033466.01.T05:CDS |
| CGAAACTCCATCTAATGGTT+CGG | 0.482608 | 6:+65959016 | MsG0680033466.01.T05:CDS |
| GTTGTCGAAACTCCATCTAA+TGG | 0.486233 | 6:+65959011 | MsG0680033466.01.T05:CDS |
| GAAGACCCTGGCTAGGGGTA+AGG | 0.489097 | 6:+65958812 | MsG0680033466.01.T05:CDS |
| AAGTGCATCAAGTTTGAGAA+TGG | 0.499761 | 6:+65958372 | MsG0680033466.01.T05:CDS |
| ACCAAAGAAGACCCTGGCTA+GGG | 0.503799 | 6:+65958806 | MsG0680033466.01.T05:CDS |
| GTTCTTGTCCGTCGAGAACC+AGG | 0.506258 | 6:+65959301 | MsG0680033466.01.T06:intron |
| ATCACATCCATTCCTCTCAA+TGG | 0.506320 | 6:-65959116 | None:intergenic |
| AGTTGTCCTTTGTCTATGTA+CGG | 0.508115 | 6:+65959062 | MsG0680033466.01.T05:CDS |
| GTAGTTACCGAACCATTAGA+TGG | 0.511983 | 6:-65959023 | None:intergenic |
| TCCAGAAGAAGAAGCGGAAG+CGG | 0.512370 | 6:+65959211 | MsG0680033466.01.T06:intron |
| CAAACACCTTACCCCTAGCC+AGG | 0.513428 | 6:-65958818 | None:intergenic |
| AACAAGTACCTCTGATCAAA+CGG | 0.515812 | 6:-65958872 | None:intergenic |
| TTGTTTGCCATTGAGAGGAA+TGG | 0.516550 | 6:+65959109 | MsG0680033466.01.T05:CDS |
| TTGAAGCAAACATTCTCAGC+AGG | 0.516651 | 6:-65958621 | None:intergenic |
| AACTGATAAGGGCAAGCAAA+GGG | 0.518673 | 6:+65958563 | MsG0680033466.01.T05:intron |
| CTTGATGTGTCACCAATGAA+TGG | 0.520700 | 6:+65958981 | MsG0680033466.01.T05:CDS |
| AAGGGCAAGCAAAGGGTGAA+TGG | 0.528120 | 6:+65958570 | MsG0680033466.01.T05:CDS |
| CTAATTTGTTTGCCATTGAG+AGG | 0.529110 | 6:+65959104 | MsG0680033466.01.T05:CDS |
| TGAGTATGCTGCCAAGTTCG+TGG | 0.543851 | 6:+65958299 | MsG0680033466.01.T05:CDS |
| TGAAGCAGCTGATGCTTGAT+GGG | 0.547070 | 6:+65959255 | MsG0680033466.01.T06:intron |
| TGAGATTCCTGACGTGCCAC+CGG | 0.556218 | 6:+65959376 | MsG0680033466.01.T06:CDS |
| TTCTTCTCCAGAAGAAGAAG+CGG | 0.569014 | 6:+65959205 | MsG0680033466.01.T06:intron |
| ATGCACTCGACTTCTCTCTC+CGG | 0.574980 | 6:-65959395 | None:intergenic |
| CATAAATTGTTTCAACAAGA+CGG | 0.577192 | 6:+65959175 | MsG0680033466.01.T06:intron |
| GTTTCCGTTGTGGCGTCAAG+GGG | 0.578114 | 6:+65958700 | MsG0680033466.01.T05:CDS |
| ACGCCATCAAAGAAAACAGT+TGG | 0.585926 | 6:-65959280 | None:intergenic |
| GCATTCTCAGCAGTGTAGTG+TGG | 0.593705 | 6:-65958339 | None:intergenic |
| CAACTGATAAGGGCAAGCAA+AGG | 0.593720 | 6:+65958562 | MsG0680033466.01.T05:intron |
| ACTATTAGATTATGAATGAG+AGG | 0.596355 | 6:+65958496 | MsG0680033466.01.T05:intron |
| GTGAAGCGGTGTTTCCGTTG+TGG | 0.597020 | 6:+65958690 | MsG0680033466.01.T05:CDS |
| AACCAAAGAAGACCCTGGCT+AGG | 0.600419 | 6:+65958805 | MsG0680033466.01.T05:CDS |
| GAGAATGTTTGCTTCAAATG+TGG | 0.604891 | 6:+65958627 | MsG0680033466.01.T05:CDS |
| CACTCGACTTCTCTCTCCGG+TGG | 0.610182 | 6:-65959392 | None:intergenic |
| AGTGAACACCGTTTGATCAG+AGG | 0.619164 | 6:+65958864 | MsG0680033466.01.T05:CDS |
| AAAGGGTGAATGGTGAGAGA+AGG | 0.623433 | 6:+65958580 | MsG0680033466.01.T05:CDS |
| GTAAGCAACAACAAAATCGT+GGG | 0.624648 | 6:+65958523 | MsG0680033466.01.T05:intron |
| AGTAAGCAACAACAAAATCG+TGG | 0.628460 | 6:+65958522 | MsG0680033466.01.T05:intron |
| TAATGCTTGTGGTGCTAATG+TGG | 0.629128 | 6:+65958668 | MsG0680033466.01.T05:CDS |
| AGAAGGCTATTGGTTATCAG+AGG | 0.636477 | 6:+65958412 | MsG0680033466.01.T05:CDS |
| AAACACCTTACCCCTAGCCA+GGG | 0.641032 | 6:-65958817 | None:intergenic |
| CCTCTACCGTACATAGACAA+AGG | 0.644168 | 6:-65959068 | None:intergenic |
| GTCACCAATGAATGGAGAGA+TGG | 0.652517 | 6:+65958989 | MsG0680033466.01.T05:CDS |
| CCAAAGAAGACCCTGGCTAG+GGG | 0.656538 | 6:+65958807 | MsG0680033466.01.T05:CDS |
| ACAACTCAAACACACTTGAG+AGG | 0.660377 | 6:-65959045 | None:intergenic |
| ATTAGATTATGAATGAGAGG+AGG | 0.664995 | 6:+65958499 | MsG0680033466.01.T05:intron |
| ACTGCGTCCTGAGATCAAGA+AGG | 0.670019 | 6:+65958395 | MsG0680033466.01.T05:CDS |
| TATGCCCCTTGACGCCACAA+CGG | 0.673153 | 6:-65958704 | None:intergenic |
| TACAGAACCAAAGAAGACCC+TGG | 0.675644 | 6:+65958800 | MsG0680033466.01.T05:CDS |
| GCACGTCAGGAATCTCATCA+GGG | 0.686034 | 6:-65959370 | None:intergenic |
| GGTCACAAGAGTAATGCTTG+TGG | 0.687242 | 6:+65958657 | MsG0680033466.01.T05:CDS |
| GTGGTGCTAATGTGGTGAAG+CGG | 0.693526 | 6:+65958676 | MsG0680033466.01.T05:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCACCAATACATAAAAATTA+CGG | - | Chr6:65958440-65958459 | None:intergenic | 20.0% |
| !!! | ATTATTTGTTTTAATTGTGG+TGG | + | Chr6:65958753-65958772 | MsG0680033466.01.T05:CDS | 20.0% |
| !!! | GACATTATTTGTTTTAATTG+TGG | + | Chr6:65958750-65958769 | MsG0680033466.01.T05:CDS | 20.0% |
| ! | ACTATTAGATTATGAATGAG+AGG | + | Chr6:65958496-65958515 | MsG0680033466.01.T05:intron | 25.0% |
| ! | CATAAATTGTTTCAACAAGA+CGG | + | Chr6:65959175-65959194 | MsG0680033466.01.T06:intron | 25.0% |
| ! | TTAATTGCTATCAAAGATAC+TGG | + | Chr6:65958912-65958931 | MsG0680033466.01.T05:CDS | 25.0% |
| !! | GATCCGTAATTTTTATGTAT+TGG | + | Chr6:65958434-65958453 | MsG0680033466.01.T05:CDS | 25.0% |
| !! | GTATCTTTGATAGCAATTAA+AGG | - | Chr6:65958912-65958931 | None:intergenic | 25.0% |
| !! | GTCTTGTTGAAACAATTTAT+GGG | - | Chr6:65959176-65959195 | None:intergenic | 25.0% |
| ATTAGATTATGAATGAGAGG+AGG | + | Chr6:65958499-65958518 | MsG0680033466.01.T05:intron | 30.0% | |
| GATCTATGAAGATGATTCAA+AGG | + | Chr6:65958470-65958489 | MsG0680033466.01.T05:intron | 30.0% | |
| ! | CGTCTTGTTGAAACAATTTA+TGG | - | Chr6:65959177-65959196 | None:intergenic | 30.0% |
| !!! | TGTTTTAATTGTGGTGGAAA+GGG | + | Chr6:65958759-65958778 | MsG0680033466.01.T05:CDS | 30.0% |
| !!! | TTGTTTTAATTGTGGTGGAA+AGG | + | Chr6:65958758-65958777 | MsG0680033466.01.T05:CDS | 30.0% |
| AACAAGTACCTCTGATCAAA+CGG | - | Chr6:65958875-65958894 | None:intergenic | 35.0% | |
| AAGTGCATCAAGTTTGAGAA+TGG | + | Chr6:65958372-65958391 | MsG0680033466.01.T05:CDS | 35.0% | |
| AGTAAGCAACAACAAAATCG+TGG | + | Chr6:65958522-65958541 | MsG0680033466.01.T05:intron | 35.0% | |
| AGTTGTCCTTTGTCTATGTA+CGG | + | Chr6:65959062-65959081 | MsG0680033466.01.T05:CDS | 35.0% | |
| GAGAATGTTTGCTTCAAATG+TGG | + | Chr6:65958627-65958646 | MsG0680033466.01.T05:CDS | 35.0% | |
| GTAAGCAACAACAAAATCGT+GGG | + | Chr6:65958523-65958542 | MsG0680033466.01.T05:intron | 35.0% | |
| TATAGTGCTCCAACTGATAA+GGG | + | Chr6:65958552-65958571 | MsG0680033466.01.T05:intron | 35.0% | |
| TGCTTCAAATGTGGAGAAAA+AGG | + | Chr6:65958636-65958655 | MsG0680033466.01.T05:CDS | 35.0% | |
| TTATAGTGCTCCAACTGATA+AGG | + | Chr6:65958551-65958570 | MsG0680033466.01.T05:intron | 35.0% | |
| ! | GCAACTTATCAATTTTTGCC+TGG | - | Chr6:65959322-65959341 | None:intergenic | 35.0% |
| ! | TTATCAGTTGGAGCACTATA+AGG | - | Chr6:65958552-65958571 | None:intergenic | 35.0% |
| !! | CTAATTTGTTTGCCATTGAG+AGG | + | Chr6:65959104-65959123 | MsG0680033466.01.T05:CDS | 35.0% |
| AACTGATAAGGGCAAGCAAA+GGG | + | Chr6:65958563-65958582 | MsG0680033466.01.T05:intron | 40.0% | |
| ACAACCATCTCTCCATTCAT+TGG | - | Chr6:65958996-65959015 | None:intergenic | 40.0% | |
| ACAACTCAAACACACTTGAG+AGG | - | Chr6:65959048-65959067 | None:intergenic | 40.0% | |
| ACGCCATCAAAGAAAACAGT+TGG | - | Chr6:65959283-65959302 | None:intergenic | 40.0% | |
| AGAGGAATGGATGTGATTCT+TGG | + | Chr6:65959122-65959141 | MsG0680033466.01.T05:CDS | 40.0% | |
| ATCACATCCATTCCTCTCAA+TGG | - | Chr6:65959119-65959138 | None:intergenic | 40.0% | |
| CGAAACTCCATCTAATGGTT+CGG | + | Chr6:65959016-65959035 | MsG0680033466.01.T05:CDS | 40.0% | |
| CTTGATGTGTCACCAATGAA+TGG | + | Chr6:65958981-65959000 | MsG0680033466.01.T05:CDS | 40.0% | |
| GTAGTTACCGAACCATTAGA+TGG | - | Chr6:65959026-65959045 | None:intergenic | 40.0% | |
| GTTGTCGAAACTCCATCTAA+TGG | + | Chr6:65959011-65959030 | MsG0680033466.01.T05:CDS | 40.0% | |
| TTCTTCTCCAGAAGAAGAAG+CGG | + | Chr6:65959205-65959224 | MsG0680033466.01.T06:intron | 40.0% | |
| TTGAAGCAAACATTCTCAGC+AGG | - | Chr6:65958624-65958643 | None:intergenic | 40.0% | |
| TTGTTTGCCATTGAGAGGAA+TGG | + | Chr6:65959109-65959128 | MsG0680033466.01.T05:CDS | 40.0% | |
| TTTAGCTAACTCCACGAACT+TGG | - | Chr6:65958313-65958332 | None:intergenic | 40.0% | |
| ! | AGAAGGCTATTGGTTATCAG+AGG | + | Chr6:65958412-65958431 | MsG0680033466.01.T05:CDS | 40.0% |
| ! | ATGTATTGGTGAGTAGCTGT+AGG | + | Chr6:65958448-65958467 | MsG0680033466.01.T05:intron | 40.0% |
| ! | GAGCCAACTGTTTTCTTTGA+TGG | + | Chr6:65959277-65959296 | MsG0680033466.01.T06:intron | 40.0% |
| ! | TAATGCTTGTGGTGCTAATG+TGG | + | Chr6:65958668-65958687 | MsG0680033466.01.T05:CDS | 40.0% |
| !! | AATTTTTGCCTGGTTCTCGA+CGG | - | Chr6:65959312-65959331 | None:intergenic | 40.0% |
| AAAGGGTGAATGGTGAGAGA+AGG | + | Chr6:65958580-65958599 | MsG0680033466.01.T05:CDS | 45.0% | |
| AGTGAACACCGTTTGATCAG+AGG | + | Chr6:65958864-65958883 | MsG0680033466.01.T05:CDS | 45.0% | |
| CAACTGATAAGGGCAAGCAA+AGG | + | Chr6:65958562-65958581 | MsG0680033466.01.T05:intron | 45.0% | |
| CCAATAGCCTTCTTGATCTC+AGG | - | Chr6:65958405-65958424 | None:intergenic | 45.0% | |
| CCTCTACCGTACATAGACAA+AGG | - | Chr6:65959071-65959090 | None:intergenic | 45.0% | |
| CCTGAGATCAAGAAGGCTAT+TGG | + | Chr6:65958402-65958421 | MsG0680033466.01.T05:CDS | 45.0% | |
| CCTTTGTCTATGTACGGTAG+AGG | + | Chr6:65959068-65959087 | MsG0680033466.01.T05:CDS | 45.0% | |
| CTTTGCTTGCCCTTATCAGT+TGG | - | Chr6:65958564-65958583 | None:intergenic | 45.0% | |
| GCAGGAGTCTCATTCTTCTT+AGG | - | Chr6:65958606-65958625 | None:intergenic | 45.0% | |
| GGTCACAAGAGTAATGCTTG+TGG | + | Chr6:65958657-65958676 | MsG0680033466.01.T05:CDS | 45.0% | |
| GTCACCAATGAATGGAGAGA+TGG | + | Chr6:65958989-65959008 | MsG0680033466.01.T05:CDS | 45.0% | |
| TACAGAACCAAAGAAGACCC+TGG | + | Chr6:65958800-65958819 | MsG0680033466.01.T05:CDS | 45.0% | |
| TGAAGCAGCTGATGCTTGAT+GGG | + | Chr6:65959255-65959274 | MsG0680033466.01.T06:intron | 45.0% | |
| TTGAAGCAGCTGATGCTTGA+TGG | + | Chr6:65959254-65959273 | MsG0680033466.01.T06:intron | 45.0% | |
| ! | GGTAAGGTGTTTGCTTTAGC+TGG | + | Chr6:65958828-65958847 | MsG0680033466.01.T05:CDS | 45.0% |
| ! | GTACGGTAGAGGTTTTGCTA+TGG | + | Chr6:65959079-65959098 | MsG0680033466.01.T05:CDS | 45.0% |
| ! | TTGCTGCTGATTGTGCTTTG+AGG | + | Chr6:65958952-65958971 | MsG0680033466.01.T05:CDS | 45.0% |
| AAACACCTTACCCCTAGCCA+GGG | - | Chr6:65958820-65958839 | None:intergenic | 50.0% | |
| AACCAAAGAAGACCCTGGCT+AGG | + | Chr6:65958805-65958824 | MsG0680033466.01.T05:CDS | 50.0% | |
| AAGGGCAAGCAAAGGGTGAA+TGG | + | Chr6:65958570-65958589 | MsG0680033466.01.T05:CDS | 50.0% | |
| ACCAAAGAAGACCCTGGCTA+GGG | + | Chr6:65958806-65958825 | MsG0680033466.01.T05:CDS | 50.0% | |
| ACTGCGTCCTGAGATCAAGA+AGG | + | Chr6:65958395-65958414 | MsG0680033466.01.T05:CDS | 50.0% | |
| ATGCACTCGACTTCTCTCTC+CGG | - | Chr6:65959398-65959417 | None:intergenic | 50.0% | |
| GCACGTCAGGAATCTCATCA+GGG | - | Chr6:65959373-65959392 | None:intergenic | 50.0% | |
| GCATTCTCAGCAGTGTAGTG+TGG | - | Chr6:65958342-65958361 | None:intergenic | 50.0% | |
| TCCAGAAGAAGAAGCGGAAG+CGG | + | Chr6:65959211-65959230 | MsG0680033466.01.T06:intron | 50.0% | |
| TGAGTATGCTGCCAAGTTCG+TGG | + | Chr6:65958299-65958318 | MsG0680033466.01.T05:CDS | 50.0% | |
| TGTTTCCGTTGTGGCGTCAA+GGG | + | Chr6:65958699-65958718 | MsG0680033466.01.T05:CDS | 50.0% | |
| ! | GTGGTGCTAATGTGGTGAAG+CGG | + | Chr6:65958676-65958695 | MsG0680033466.01.T05:CDS | 50.0% |
| CAAACACCTTACCCCTAGCC+AGG | - | Chr6:65958821-65958840 | None:intergenic | 55.0% | |
| CCAAAGAAGACCCTGGCTAG+GGG | + | Chr6:65958807-65958826 | MsG0680033466.01.T05:CDS | 55.0% | |
| GGCACGTCAGGAATCTCATC+AGG | - | Chr6:65959374-65959393 | None:intergenic | 55.0% | |
| GTGAAGCGGTGTTTCCGTTG+TGG | + | Chr6:65958690-65958709 | MsG0680033466.01.T05:CDS | 55.0% | |
| GTGTTTCCGTTGTGGCGTCA+AGG | + | Chr6:65958698-65958717 | MsG0680033466.01.T05:CDS | 55.0% | |
| GTTCTTGTCCGTCGAGAACC+AGG | + | Chr6:65959301-65959320 | MsG0680033466.01.T06:intron | 55.0% | |
| GTTTCCGTTGTGGCGTCAAG+GGG | + | Chr6:65958700-65958719 | MsG0680033466.01.T05:CDS | 55.0% | |
| TATGCCCCTTGACGCCACAA+CGG | - | Chr6:65958707-65958726 | None:intergenic | 55.0% | |
| TCCGCTTCCGCTTCTTCTTC+TGG | - | Chr6:65959215-65959234 | None:intergenic | 55.0% | |
| TGAGATTCCTGACGTGCCAC+CGG | + | Chr6:65959376-65959395 | MsG0680033466.01.T06:CDS | 55.0% | |
| CACTCGACTTCTCTCTCCGG+TGG | - | Chr6:65959395-65959414 | None:intergenic | 60.0% | |
| CCCCTAGCCAGGGTCTTCTT+TGG | - | Chr6:65958810-65958829 | None:intergenic | 60.0% | |
| GAAGACCCTGGCTAGGGGTA+AGG | + | Chr6:65958812-65958831 | MsG0680033466.01.T05:CDS | 60.0% | |
| TCTCTCTCCGGTGGCACGTC+AGG | - | Chr6:65959386-65959405 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 65958288 | 65959436 | 65958288 | ID=MsG0680033466.01;Name=MsG0680033466.01 |
| Chr6 | mRNA | 65958288 | 65959154 | 65958288 | ID=MsG0680033466.01.T01;Parent=MsG0680033466.01;Name=MsG0680033466.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|3|0|181 |
| Chr6 | exon | 65958288 | 65958445 | 65958288 | ID=MsG0680033466.01.T01:exon:4319;Parent=MsG0680033466.01.T01 |
| Chr6 | exon | 65958647 | 65958885 | 65958647 | ID=MsG0680033466.01.T01:exon:4320;Parent=MsG0680033466.01.T01 |
| Chr6 | exon | 65959006 | 65959154 | 65959006 | ID=MsG0680033466.01.T01:exon:4321;Parent=MsG0680033466.01.T01 |
| Chr6 | CDS | 65958288 | 65958445 | 65958288 | ID=MsG0680033466.01.T01:cds;Parent=MsG0680033466.01.T01 |
| Chr6 | CDS | 65958647 | 65958885 | 65958647 | ID=MsG0680033466.01.T01:cds;Parent=MsG0680033466.01.T01 |
| Chr6 | CDS | 65959006 | 65959154 | 65959006 | ID=MsG0680033466.01.T01:cds;Parent=MsG0680033466.01.T01 |
| Chr6 | mRNA | 65958507 | 65959436 | 65958507 | ID=MsG0680033466.01.T02;Parent=MsG0680033466.01;Name=MsG0680033466.01.T02;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|2|0|277 |
| Chr6 | exon | 65958507 | 65959083 | 65958507 | ID=MsG0680033466.01.T02:exon:4322;Parent=MsG0680033466.01.T02 |
| Chr6 | exon | 65959180 | 65959436 | 65959180 | ID=MsG0680033466.01.T02:exon:4323;Parent=MsG0680033466.01.T02 |
| Chr6 | CDS | 65958507 | 65959083 | 65958507 | ID=MsG0680033466.01.T02:cds;Parent=MsG0680033466.01.T02 |
| Chr6 | CDS | 65959180 | 65959436 | 65959180 | ID=MsG0680033466.01.T02:cds;Parent=MsG0680033466.01.T02 |
| Chr6 | mRNA | 65958507 | 65959436 | 65958507 | ID=MsG0680033466.01.T03;Parent=MsG0680033466.01;Name=MsG0680033466.01.T03;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0|0|2|0|259 |
| Chr6 | exon | 65958507 | 65959010 | 65958507 | ID=MsG0680033466.01.T03:exon:4324;Parent=MsG0680033466.01.T03 |
| Chr6 | exon | 65959161 | 65959436 | 65959161 | ID=MsG0680033466.01.T03:exon:4325;Parent=MsG0680033466.01.T03 |
| Chr6 | CDS | 65958507 | 65959010 | 65958507 | ID=MsG0680033466.01.T03:cds;Parent=MsG0680033466.01.T03 |
| Chr6 | CDS | 65959161 | 65959436 | 65959161 | ID=MsG0680033466.01.T03:cds;Parent=MsG0680033466.01.T03 |
| Chr6 | mRNA | 65958288 | 65959154 | 65958288 | ID=MsG0680033466.01.T04;Parent=MsG0680033466.01;Name=MsG0680033466.01.T04;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|2|0|255 |
| Chr6 | exon | 65958288 | 65958455 | 65958288 | ID=MsG0680033466.01.T04:exon:4326;Parent=MsG0680033466.01.T04 |
| Chr6 | exon | 65958555 | 65959154 | 65958555 | ID=MsG0680033466.01.T04:exon:4327;Parent=MsG0680033466.01.T04 |
| Chr6 | CDS | 65958288 | 65958455 | 65958288 | ID=MsG0680033466.01.T04:cds;Parent=MsG0680033466.01.T04 |
| Chr6 | CDS | 65958555 | 65959154 | 65958555 | ID=MsG0680033466.01.T04:cds;Parent=MsG0680033466.01.T04 |
| Chr6 | mRNA | 65958288 | 65959154 | 65958288 | ID=MsG0680033466.01.T05;Parent=MsG0680033466.01;Name=MsG0680033466.01.T05;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|2|0|254 |
| Chr6 | exon | 65958288 | 65958465 | 65958288 | ID=MsG0680033466.01.T05:exon:4328;Parent=MsG0680033466.01.T05 |
| Chr6 | exon | 65958568 | 65959154 | 65958568 | ID=MsG0680033466.01.T05:exon:4329;Parent=MsG0680033466.01.T05 |
| Chr6 | CDS | 65958288 | 65958465 | 65958288 | ID=MsG0680033466.01.T05:cds;Parent=MsG0680033466.01.T05 |
| Chr6 | CDS | 65958568 | 65959154 | 65958568 | ID=MsG0680033466.01.T05:cds;Parent=MsG0680033466.01.T05 |
| Chr6 | mRNA | 65958507 | 65959436 | 65958507 | ID=MsG0680033466.01.T06;Parent=MsG0680033466.01;Name=MsG0680033466.01.T06;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|2|0|218 |
| Chr6 | exon | 65958507 | 65959037 | 65958507 | ID=MsG0680033466.01.T06:exon:4330;Parent=MsG0680033466.01.T06 |
| Chr6 | exon | 65959311 | 65959436 | 65959311 | ID=MsG0680033466.01.T06:exon:4331;Parent=MsG0680033466.01.T06 |
| Chr6 | CDS | 65958507 | 65959037 | 65958507 | ID=MsG0680033466.01.T06:cds;Parent=MsG0680033466.01.T06 |
| Chr6 | CDS | 65959311 | 65959436 | 65959311 | ID=MsG0680033466.01.T06:cds;Parent=MsG0680033466.01.T06 |
| Gene Sequence |
| Protein sequence |
