Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038625.01.T01 | XP_003622943.1 | 85.93 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 4.22E-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038625.01.T01 | P47192 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 1.49E-92 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038625.01.T01 | G7L1A5 | 85.930 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 2.02e-121 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048036.01 | MsG0780038625.01 | 0.812354 | 4.423497e-51 | 2.806314e-48 |
| MsG0080048347.01 | MsG0780038625.01 | 0.811763 | 5.949850e-51 | 3.714739e-48 |
| MsG0080048349.01 | MsG0780038625.01 | 0.806258 | 8.977232e-50 | 4.850498e-47 |
| MsG0080048352.01 | MsG0780038625.01 | 0.812493 | 4.124184e-51 | 2.626099e-48 |
| MsG0180003240.01 | MsG0780038625.01 | 0.818419 | 1.979275e-52 | 1.480925e-49 |
| MsG0180004203.01 | MsG0780038625.01 | 0.822203 | 2.685562e-53 | 2.232779e-50 |
| MsG0180004393.01 | MsG0780038625.01 | 0.804241 | 2.374573e-49 | 1.218076e-46 |
| MsG0180005357.01 | MsG0780038625.01 | 0.805834 | 1.102453e-49 | 5.892330e-47 |
| MsG0180005358.01 | MsG0780038625.01 | 0.828286 | 9.784841e-55 | 9.682318e-52 |
| MsG0280006442.01 | MsG0780038625.01 | 0.801889 | 7.276995e-49 | 3.515334e-46 |
| MsG0380011635.01 | MsG0780038625.01 | 0.803166 | 3.968547e-49 | 1.980432e-46 |
| MsG0380012654.01 | MsG0780038625.01 | 0.806577 | 7.687533e-50 | 4.187362e-47 |
| MsG0480019105.01 | MsG0780038625.01 | 0.800286 | 1.547971e-48 | 7.180106e-46 |
| MsG0480022309.01 | MsG0780038625.01 | 0.816772 | 4.653901e-52 | 3.327979e-49 |
| MsG0480022833.01 | MsG0780038625.01 | 0.805358 | 1.387265e-49 | 7.324438e-47 |
| MsG0580024408.01 | MsG0780038625.01 | 0.804829 | 1.790261e-49 | 9.324787e-47 |
| MsG0580024990.01 | MsG0780038625.01 | 0.800227 | 1.591245e-48 | 7.369621e-46 |
| MsG0580025870.01 | MsG0780038625.01 | 0.844564 | 6.991979e-59 | 1.133385e-55 |
| MsG0380017151.01 | MsG0780038625.01 | 0.802399 | 5.713588e-49 | 2.796160e-46 |
| MsG0380017690.01 | MsG0780038625.01 | 0.813887 | 2.038670e-51 | 1.347665e-48 |
| MsG0580027638.01 | MsG0780038625.01 | 0.802436 | 5.614108e-49 | 2.750013e-46 |
| MsG0580029555.01 | MsG0780038625.01 | 0.800589 | 1.342478e-48 | 6.274999e-46 |
| MsG0580030145.01 | MsG0780038625.01 | 0.809489 | 1.845054e-50 | 1.084742e-47 |
| MsG0280008601.01 | MsG0780038625.01 | 0.822177 | 2.722705e-53 | 2.261881e-50 |
| MsG0780037917.01 | MsG0780038625.01 | 0.829821 | 4.154421e-55 | 4.300501e-52 |
| MsG0780037943.01 | MsG0780038625.01 | 0.841296 | 5.178309e-58 | 7.574471e-55 |
| MsG0780038622.01 | MsG0780038625.01 | 0.837257 | 5.783476e-57 | 7.470140e-54 |
| MsG0780038625.01 | MsG0780039576.01 | 0.837358 | 5.448969e-57 | 7.060239e-54 |
| MsG0780038625.01 | MsG0780039968.01 | 0.851190 | 1.042581e-60 | 2.093512e-57 |
| MsG0780038625.01 | MsG0880042810.01 | 0.809205 | 2.123393e-50 | 1.239029e-47 |
| MsG0780038625.01 | MsG0880046429.01 | 0.810832 | 9.475946e-51 | 5.772461e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038625.01.T01 | MTR_7g058640 | 85.930 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 5.11e-125 | 352 |
| MsG0780038625.01.T01 | MTR_7g058640 | 84.574 | 188 | 17 | 1 | 1 | 188 | 1 | 176 | 2.45e-115 | 326 |
| MsG0780038625.01.T01 | MTR_4g022570 | 68.342 | 199 | 51 | 1 | 1 | 199 | 1 | 187 | 7.52e-98 | 283 |
| MsG0780038625.01.T01 | MTR_1g047720 | 62.814 | 199 | 62 | 1 | 1 | 199 | 1 | 187 | 2.46e-92 | 269 |
| MsG0780038625.01.T01 | MTR_7g058900 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 7.40e-91 | 265 |
| MsG0780038625.01.T01 | MTR_4g083490 | 59.898 | 197 | 67 | 1 | 3 | 199 | 5 | 189 | 1.41e-86 | 254 |
| MsG0780038625.01.T01 | MTR_2g028790 | 60.406 | 197 | 66 | 1 | 3 | 199 | 7 | 191 | 1.37e-84 | 249 |
| MsG0780038625.01.T01 | MTR_2g436870 | 60.302 | 199 | 67 | 1 | 1 | 199 | 1 | 187 | 6.38e-84 | 248 |
| MsG0780038625.01.T01 | MTR_7g058640 | 90.826 | 109 | 10 | 0 | 91 | 199 | 1 | 109 | 6.41e-69 | 207 |
| MsG0780038625.01.T01 | MTR_1g111890 | 46.789 | 218 | 85 | 3 | 1 | 199 | 1 | 206 | 8.59e-68 | 207 |
| MsG0780038625.01.T01 | MTR_1g047710 | 62.595 | 131 | 47 | 1 | 69 | 199 | 7 | 135 | 1.82e-57 | 177 |
| MsG0780038625.01.T01 | MTR_4g022470 | 67.273 | 110 | 36 | 0 | 73 | 182 | 7 | 116 | 2.21e-50 | 159 |
| MsG0780038625.01.T01 | MTR_5g089370 | 32.642 | 193 | 115 | 4 | 5 | 196 | 2 | 180 | 1.09e-26 | 101 |
| MsG0780038625.01.T01 | MTR_4g052550 | 29.082 | 196 | 124 | 4 | 5 | 199 | 2 | 183 | 2.11e-26 | 101 |
| MsG0780038625.01.T01 | MTR_4g115390 | 29.744 | 195 | 126 | 6 | 6 | 199 | 3 | 187 | 1.67e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038625.01.T01 | AT2G33120 | 66.834 | 199 | 62 | 2 | 1 | 199 | 1 | 195 | 3.14e-95 | 277 |
| MsG0780038625.01.T01 | AT2G33120 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 1.52e-93 | 272 |
| MsG0780038625.01.T01 | AT1G04750 | 65.829 | 199 | 56 | 1 | 1 | 199 | 1 | 187 | 3.51e-93 | 271 |
| MsG0780038625.01.T01 | AT1G04760 | 63.819 | 199 | 60 | 1 | 1 | 199 | 1 | 187 | 3.21e-92 | 269 |
| MsG0780038625.01.T01 | AT1G04760 | 63.819 | 199 | 60 | 1 | 1 | 199 | 1 | 187 | 3.21e-92 | 269 |
| MsG0780038625.01.T01 | AT2G32670 | 64.322 | 199 | 59 | 1 | 1 | 199 | 66 | 252 | 1.89e-91 | 269 |
| MsG0780038625.01.T01 | AT4G15780 | 58.763 | 194 | 67 | 2 | 1 | 193 | 1 | 182 | 1.71e-78 | 233 |
| MsG0780038625.01.T01 | AT2G33110 | 54.040 | 198 | 75 | 2 | 1 | 198 | 1 | 182 | 1.32e-68 | 209 |
| MsG0780038625.01.T01 | AT3G54300 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 3.55e-68 | 208 |
| MsG0780038625.01.T01 | AT3G54300 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 3.55e-68 | 208 |
| MsG0780038625.01.T01 | AT3G54300 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 3.55e-68 | 208 |
| MsG0780038625.01.T01 | AT2G33110 | 58.046 | 174 | 61 | 1 | 1 | 174 | 1 | 162 | 1.13e-67 | 206 |
| MsG0780038625.01.T01 | AT1G04750 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 1.19e-48 | 155 |
| MsG0780038625.01.T01 | AT1G04750 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 1.19e-48 | 155 |
| MsG0780038625.01.T01 | AT1G04750 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 1.19e-48 | 155 |
| MsG0780038625.01.T01 | AT5G11150 | 30.964 | 197 | 120 | 4 | 5 | 199 | 2 | 184 | 1.66e-26 | 101 |
| MsG0780038625.01.T01 | AT5G11150 | 30.964 | 197 | 120 | 4 | 5 | 199 | 2 | 184 | 2.69e-26 | 100 |
| MsG0780038625.01.T01 | AT5G22360 | 28.934 | 197 | 124 | 4 | 5 | 199 | 2 | 184 | 1.27e-25 | 99.4 |
| MsG0780038625.01.T01 | AT4G32150 | 30.570 | 193 | 119 | 4 | 5 | 196 | 2 | 180 | 4.29e-24 | 95.1 |
| MsG0780038625.01.T01 | AT2G25340 | 30.319 | 188 | 116 | 4 | 5 | 191 | 2 | 175 | 6.62e-23 | 92.0 |
| MsG0780038625.01.T01 | AT2G33120 | 56.667 | 60 | 26 | 0 | 140 | 199 | 46 | 105 | 3.18e-13 | 64.7 |
Find 31 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 7:+50082950 | MsG0780038625.01.T01:CDS |
| AGCTATTTCAGCAAAGTTTC+CGG | 0.255031 | 7:-50082433 | None:intergenic |
| GCAAGTTTGCTAATCTCTTC+TGG | 0.255298 | 7:-50083115 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7:+50082392 | MsG0780038625.01.T01:CDS |
| TGGTTGCTGGGAGTCTTTGC+AGG | 0.323885 | 7:-50082464 | None:intergenic |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7:-50082415 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 7:+50083329 | MsG0780038625.01.T01:CDS |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 7:+50082951 | MsG0780038625.01.T01:CDS |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 7:+50082371 | MsG0780038625.01.T01:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 7:-50082879 | None:intergenic |
| AGCAAAGTTTCCGGTGAAGT+TGG | 0.500993 | 7:-50082424 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7:+50082383 | MsG0780038625.01.T01:CDS |
| GGCAAGTACTGAATCCATCA+TGG | 0.518155 | 7:-50082536 | None:intergenic |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7:+50082414 | MsG0780038625.01.T01:CDS |
| TCAAGTTCTAGATGTTATGT+TGG | 0.518679 | 7:+50083159 | MsG0780038625.01.T01:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 7:+50082877 | MsG0780038625.01.T01:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 7:+50082829 | MsG0780038625.01.T01:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7:+50082522 | MsG0780038625.01.T01:CDS |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7:-50082520 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.571090 | 7:-50082530 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 7:+50082799 | MsG0780038625.01.T01:CDS |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.586038 | 7:+50083132 | MsG0780038625.01.T01:CDS |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 7:+50082378 | MsG0780038625.01.T01:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 7:+50083066 | MsG0780038625.01.T01:intron |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7:-50082508 | None:intergenic |
| GCAAGTACTGAATCCATCAT+GGG | 0.632742 | 7:-50082535 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 7:+50082880 | MsG0780038625.01.T01:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7:+50082492 | MsG0780038625.01.T01:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 7:+50082905 | MsG0780038625.01.T01:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7:+50083087 | MsG0780038625.01.T01:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7:-50083338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGAAAAAAATAAAACG+AGG | - | Chr7:50082560-50082579 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | - | Chr7:50083494-50083513 | None:intergenic | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | - | Chr7:50083356-50083375 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | - | Chr7:50083249-50083268 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTATTCTATA+TGG | + | Chr7:50083043-50083062 | MsG0780038625.01.T01:intron | 15.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | + | Chr7:50083563-50083582 | MsG0780038625.01.T01:intron | 20.0% |
| !!! | GTTTTTTTATTCTATATGGA+TGG | + | Chr7:50083047-50083066 | MsG0780038625.01.T01:intron | 20.0% |
| !!! | TCTTTTACATAATCTAATTG+TGG | + | Chr7:50082573-50082592 | MsG0780038625.01.T01:intron | 20.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | + | Chr7:50082950-50082969 | MsG0780038625.01.T01:CDS | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | + | Chr7:50082951-50082970 | MsG0780038625.01.T01:CDS | 25.0% |
| ! | AGGTATGTATATGTCTAAAT+TGG | + | Chr7:50083194-50083213 | MsG0780038625.01.T01:intron | 25.0% |
| ! | ATACATAAACTGTGTTCATT+TGG | + | Chr7:50083367-50083386 | MsG0780038625.01.T01:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | - | Chr7:50083439-50083458 | None:intergenic | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | - | Chr7:50083490-50083509 | None:intergenic | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | Chr7:50082726-50082745 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | + | Chr7:50083574-50083593 | MsG0780038625.01.T01:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | + | Chr7:50083174-50083193 | MsG0780038625.01.T01:CDS | 25.0% |
| AATAAATGACTCACATCACA+TGG | + | Chr7:50083443-50083462 | MsG0780038625.01.T01:intron | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | + | Chr7:50082371-50082390 | MsG0780038625.01.T01:CDS | 30.0% | |
| TCAAATGCATTTACATGTAC+TGG | + | Chr7:50082679-50082698 | MsG0780038625.01.T01:intron | 30.0% | |
| ! | GATTTTACCAAAAGATATGC+TGG | + | Chr7:50082902-50082921 | MsG0780038625.01.T01:CDS | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | Chr7:50082487-50082506 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | + | Chr7:50082856-50082875 | MsG0780038625.01.T01:CDS | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | + | Chr7:50083159-50083178 | MsG0780038625.01.T01:CDS | 30.0% |
| AAATTCACTTACAACACCGA+TGG | + | Chr7:50082492-50082511 | MsG0780038625.01.T01:CDS | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | + | Chr7:50082799-50082818 | MsG0780038625.01.T01:CDS | 35.0% | |
| ATGGTTTAGACCGAAAATGA+AGG | + | Chr7:50083066-50083085 | MsG0780038625.01.T01:intron | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | + | Chr7:50083203-50083222 | MsG0780038625.01.T01:intron | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | + | Chr7:50082605-50082624 | MsG0780038625.01.T01:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | + | Chr7:50082905-50082924 | MsG0780038625.01.T01:CDS | 35.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+CGG | - | Chr7:50082436-50082455 | None:intergenic | 35.0% |
| ! | TGCATATGCTCCTTCATTTT+CGG | - | Chr7:50083079-50083098 | None:intergenic | 35.0% |
| ! | TTTTCCTCCAGCATATCTTT+TGG | - | Chr7:50082912-50082931 | None:intergenic | 35.0% |
| !! | TACATGTACTGGTTTCATGT+CGG | + | Chr7:50082690-50082709 | MsG0780038625.01.T01:intron | 35.0% |
| !!! | TGAATTTTGTGTTGGTTGCT+GGG | - | Chr7:50082479-50082498 | None:intergenic | 35.0% |
| ACTTGCGAAAGTAAAAGCTC+AGG | + | Chr7:50083132-50083151 | MsG0780038625.01.T01:CDS | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | - | Chr7:50083341-50083360 | None:intergenic | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | + | Chr7:50083087-50083106 | MsG0780038625.01.T01:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | + | Chr7:50083302-50083321 | MsG0780038625.01.T01:CDS | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | Chr7:50082511-50082530 | None:intergenic | 40.0% |
| ! | TGGTTTGAATATGGCTTTGC+AGG | + | Chr7:50083583-50083602 | MsG0780038625.01.T01:intron | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | + | Chr7:50083598-50083617 | MsG0780038625.01.T01:intron | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | - | Chr7:50082538-50082557 | None:intergenic | 40.0% |
| !! | GCAAGTTTGCTAATCTCTTC+TGG | - | Chr7:50083118-50083137 | None:intergenic | 40.0% |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | - | Chr7:50082480-50082499 | None:intergenic | 40.0% |
| AACGGTCTGCACTTCAAACT+TGG | - | Chr7:50083231-50083250 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | + | Chr7:50083329-50083348 | MsG0780038625.01.T01:CDS | 45.0% | |
| AGCAAAGTTTCCGGTGAAGT+TGG | - | Chr7:50082427-50082446 | None:intergenic | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | Chr7:50082882-50082901 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | Chr7:50082880-50082899 | MsG0780038625.01.T01:CDS | 45.0% | |
| GCAATGCGATATATGAGGCA+CGG | + | Chr7:50082610-50082629 | MsG0780038625.01.T01:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | Chr7:50082709-50082728 | MsG0780038625.01.T01:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | + | Chr7:50083597-50083616 | MsG0780038625.01.T01:intron | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | + | Chr7:50083599-50083618 | MsG0780038625.01.T01:intron | 45.0% |
| !! | GGCAAGTACTGAATCCATCA+TGG | - | Chr7:50082539-50082558 | None:intergenic | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | - | Chr7:50083502-50083521 | None:intergenic | 5.0% |
| AGCTTACTGCGTTGTTGCTG+TGG | + | Chr7:50082829-50082848 | MsG0780038625.01.T01:CDS | 50.0% | |
| ATCATGGGCGAGGTAGTTGA+AGG | - | Chr7:50082523-50082542 | None:intergenic | 50.0% | |
| CACTTCAAACTTGGCTCCAG+AGG | - | Chr7:50083222-50083241 | None:intergenic | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | + | Chr7:50082877-50082896 | MsG0780038625.01.T01:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | Chr7:50082533-50082552 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | Chr7:50082522-50082541 | MsG0780038625.01.T01:CDS | 50.0% | |
| ! | ATATACAGCTTTGTGGCGCG+TGG | + | Chr7:50082378-50082397 | MsG0780038625.01.T01:CDS | 50.0% |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | + | Chr7:50083600-50083619 | MsG0780038625.01.T01:intron | 50.0% |
| TGGTTGCTGGGAGTCTTTGC+AGG | - | Chr7:50082467-50082486 | None:intergenic | 55.0% | |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | + | Chr7:50083609-50083628 | MsG0780038625.01.T01:CDS | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | + | Chr7:50083605-50083624 | MsG0780038625.01.T01:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | - | Chr7:50082418-50082437 | None:intergenic | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | + | Chr7:50082414-50082433 | MsG0780038625.01.T01:CDS | 60.0% | |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | + | Chr7:50083608-50083627 | MsG0780038625.01.T01:CDS | 60.0% |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | + | Chr7:50083604-50083623 | MsG0780038625.01.T01:intron | 60.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | + | Chr7:50083618-50083637 | MsG0780038625.01.T01:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | Chr7:50082383-50082402 | MsG0780038625.01.T01:CDS | 65.0% |
| GGCGCGTGGCACGGTGATTC+TGG | + | Chr7:50082392-50082411 | MsG0780038625.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 50082360 | 50083652 | 50082360 | ID=MsG0780038625.01;Name=MsG0780038625.01 |
| Chr7 | mRNA | 50082360 | 50083652 | 50082360 | ID=MsG0780038625.01.T01;Parent=MsG0780038625.01;Name=MsG0780038625.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|5|0|199 |
| Chr7 | exon | 50082360 | 50082549 | 50082360 | ID=MsG0780038625.01.T01:exon:5546;Parent=MsG0780038625.01.T01 |
| Chr7 | exon | 50082795 | 50082972 | 50082795 | ID=MsG0780038625.01.T01:exon:5547;Parent=MsG0780038625.01.T01 |
| Chr7 | exon | 50083075 | 50083195 | 50083075 | ID=MsG0780038625.01.T01:exon:5548;Parent=MsG0780038625.01.T01 |
| Chr7 | exon | 50083288 | 50083350 | 50083288 | ID=MsG0780038625.01.T01:exon:5549;Parent=MsG0780038625.01.T01 |
| Chr7 | exon | 50083605 | 50083652 | 50083605 | ID=MsG0780038625.01.T01:exon:5550;Parent=MsG0780038625.01.T01 |
| Chr7 | CDS | 50082360 | 50082549 | 50082360 | ID=MsG0780038625.01.T01:cds;Parent=MsG0780038625.01.T01 |
| Chr7 | CDS | 50082795 | 50082972 | 50082795 | ID=MsG0780038625.01.T01:cds;Parent=MsG0780038625.01.T01 |
| Chr7 | CDS | 50083075 | 50083195 | 50083075 | ID=MsG0780038625.01.T01:cds;Parent=MsG0780038625.01.T01 |
| Chr7 | CDS | 50083288 | 50083350 | 50083288 | ID=MsG0780038625.01.T01:cds;Parent=MsG0780038625.01.T01 |
| Chr7 | CDS | 50083605 | 50083652 | 50083605 | ID=MsG0780038625.01.T01:cds;Parent=MsG0780038625.01.T01 |
| Gene Sequence |
| Protein sequence |
