AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005358.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005358.01.T01 MTR_1g098140 99.486 389 2 0 1 389 1 389 0.0 803
MsG0180005358.01.T01 MTR_1g097935 99.229 389 3 0 1 389 1 389 0.0 801
MsG0180005358.01.T01 MTR_1g097910 98.972 389 4 0 1 389 1 389 0.0 801
MsG0180005358.01.T01 MTR_7g016800 98.715 389 5 0 1 389 1 389 0.0 798
MsG0180005358.01.T01 MTR_7g016820 97.943 389 8 0 1 389 1 389 0.0 792
MsG0180005358.01.T01 MTR_7g016700 97.943 389 8 0 1 389 1 389 0.0 791
MsG0180005358.01.T01 MTR_7g016720 98.201 389 7 0 1 389 1 389 0.0 791
MsG0180005358.01.T01 MTR_5g007730 97.429 389 10 0 1 389 1 389 0.0 791
MsG0180005358.01.T01 MTR_5g007760 97.686 389 9 0 1 389 1 389 0.0 790
MsG0180005358.01.T01 MTR_7g016780 97.429 389 10 0 1 389 1 389 0.0 788
MsG0180005358.01.T01 MTR_5g007713 96.658 389 13 0 1 389 1 389 0.0 783
MsG0180005358.01.T01 MTR_5g007717 96.401 389 14 0 1 389 1 389 0.0 782
MsG0180005358.01.T01 MTR_3g083920 90.979 388 35 0 1 388 1 388 0.0 751
MsG0180005358.01.T01 MTR_3g083910 90.181 387 38 0 1 387 1 387 0.0 746
MsG0180005358.01.T01 MTR_2g058470 87.404 389 49 0 1 389 1 389 0.0 716
MsG0180005358.01.T01 MTR_3g086260 81.912 387 70 0 1 387 1 387 0.0 679
MsG0180005358.01.T01 MTR_7g084300 80.463 389 76 0 1 389 1 389 0.0 674
MsG0180005358.01.T01 MTR_7g113405 95.710 303 13 0 87 389 1 303 0.0 598
MsG0180005358.01.T01 MTR_3g088675 66.324 389 131 0 1 389 1 389 0.0 577
MsG0180005358.01.T01 MTR_5g007740 80.061 326 65 0 64 389 1 326 0.0 549
MsG0180005358.01.T01 MTR_5g007723 69.018 397 74 5 12 389 32 398 0.0 534
MsG0180005358.01.T01 MTR_5g007770 77.667 300 34 2 70 369 1 267 1.83e-167 469
MsG0180005358.01.T01 MTR_3g088670 49.100 389 184 6 10 387 2 387 2.51e-130 380
MsG0180005358.01.T01 MTR_4g075560 42.632 380 211 4 11 387 13 388 1.56e-102 309
MsG0180005358.01.T01 MTR_4g078730 37.802 373 225 2 15 387 24 389 7.36e-94 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005358.01.T01 AT5G13930 82.732 388 66 1 3 389 8 395 0.0 675
MsG0180005358.01.T01 AT4G34850 40.849 377 219 3 15 389 18 392 1.35e-97 296
MsG0180005358.01.T01 AT4G00040 40.584 377 214 5 14 387 16 385 1.34e-95 291
MsG0180005358.01.T01 AT1G02050 40.053 377 216 5 15 388 24 393 1.69e-88 273
MsG0180005358.01.T01 AT4G34850 40.312 320 188 2 72 389 1 319 4.45e-82 254
MsG0180005358.01.T01 AT3G52160 26.749 243 158 9 150 387 97 324 3.53e-12 67.4
MsG0180005358.01.T01 AT3G52160 26.749 243 158 8 150 387 210 437 8.73e-12 67.0

Find 93 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAGGTTTCTCAATTTC+TGG 0.101255 1:-90811495 None:intergenic
TGCAGTTCCAATGGCTAAAA+TGG 0.233615 1:-90810730 None:intergenic
CTGATTACAATTCAATCTTT+TGG 0.254027 1:+90811685 MsG0180005358.01.T01:CDS
CCTTTGAGCATTGCGAATTT+CGG 0.276950 1:-90810691 None:intergenic
GGTTTCTCAATTTCTGGTAT+TGG 0.282073 1:-90811489 None:intergenic
TACCAACAAGGTTGCTTTGC+AGG 0.283953 1:+90811285 MsG0180005358.01.T01:CDS
AGAGAAGTGCTTAGTGAATA+TGG 0.295286 1:+90811789 MsG0180005358.01.T01:CDS
CTTTCAAAATCTCCTCTGTT+AGG 0.305425 1:-90811020 None:intergenic
TCAATGGCCCCTTCACTATC+TGG 0.309674 1:-90811549 None:intergenic
CTTGTTGGACAAGCACTATT+TGG 0.314421 1:+90811432 MsG0180005358.01.T01:CDS
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 1:+90811317 MsG0180005358.01.T01:CDS
GTCTTCGTCCATACGTAAAA+AGG 0.344471 1:+90811253 MsG0180005358.01.T01:CDS
TGAATACATGGCACCTTCAT+TGG 0.347646 1:+90811059 MsG0180005358.01.T01:CDS
GTTGTAGAGGTACCTAGATT+AGG 0.360448 1:+90811102 MsG0180005358.01.T01:CDS
TCTACTTGATCTAGAATTGC+AGG 0.378004 1:-90811726 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 1:-90811165 None:intergenic
AGGAGGCACGGTGCTTCGTT+TGG 0.381968 1:+90811305 MsG0180005358.01.T01:CDS
TACCAACTCACAAAACTCTT+AGG 0.382277 1:+90811231 MsG0180005358.01.T01:CDS
CTTTGTTCAACACAATTGGC+TGG 0.390254 1:-90810756 None:intergenic
CCAATGGCTAAAATGGTTGC+AGG 0.393820 1:-90810723 None:intergenic
CACCTTCTTAAAGATGTTCC+CGG 0.401953 1:+90811603 MsG0180005358.01.T01:CDS
TTGTAGAGGTACCTAGATTA+GGG 0.409559 1:+90811103 MsG0180005358.01.T01:CDS
GGAGCTGCTGCACTGATTGT+TGG 0.411529 1:+90811459 MsG0180005358.01.T01:CDS
AGTAAAAGCTATAAAAGAAT+GGG 0.422344 1:+90811137 MsG0180005358.01.T01:CDS
ACTCACTTGGACAGCCTTGT+TGG 0.426712 1:+90811417 MsG0180005358.01.T01:CDS
GATAGTGAAGGGGCCATTGA+TGG 0.440309 1:+90811552 MsG0180005358.01.T01:CDS
GTCACTGCAGTTACATTTCG+CGG 0.450823 1:+90811384 MsG0180005358.01.T01:CDS
TTGCGTAGTGTCACTATATG+AGG 0.451569 1:+90811957 MsG0180005358.01.T01:CDS
GTGATAAATCTATGATCAAA+AGG 0.453113 1:+90810986 MsG0180005358.01.T01:CDS
CAGTAAAAGCTATAAAAGAA+TGG 0.459818 1:+90811136 MsG0180005358.01.T01:CDS
ACGCAAAACAACGGTTTCAA+TGG 0.461439 1:-90811940 None:intergenic
ATATTCACTAAGCACTTCTC+TGG 0.467287 1:-90811787 None:intergenic
CCGAAATTCGCAATGCTCAA+AGG 0.469903 1:+90810691 MsG0180005358.01.T01:CDS
TTCACGAAGGTGACCATCAA+TGG 0.470504 1:-90811565 None:intergenic
CGAAATTCGCAATGCTCAAA+GGG 0.470864 1:+90810692 MsG0180005358.01.T01:CDS
CTCCTGCAAAGCAACCTTGT+TGG 0.478750 1:-90811287 None:intergenic
GTGAGTTGGTAATCAGCTCC+AGG 0.479782 1:-90811219 None:intergenic
CTGTCCAAGTGAGTATCACT+AGG 0.483602 1:-90811408 None:intergenic
AAAGAACATCAATAAAGCAT+TGG 0.485622 1:+90811635 MsG0180005358.01.T01:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 1:+90811570 MsG0180005358.01.T01:CDS
TGTGCTTTGTTCAACACAAT+TGG 0.494990 1:-90810760 None:intergenic
TCTAGAATTGCAGGTCCACC+AGG 0.500155 1:-90811717 None:intergenic
GGCTGGGTTTGCAGTTCCAA+TGG 0.502395 1:-90810739 None:intergenic
GCAGCCTCCTTCCCTAATCT+AGG 0.505127 1:-90811114 None:intergenic
TGGCACCTTCATTGGATGCT+AGG 0.506096 1:+90811067 MsG0180005358.01.T01:CDS
GATGTTCTTTGAAACAATCC+CGG 0.506109 1:-90811622 None:intergenic
GGACTGAAGACCACGGGAGA+AGG 0.524843 1:+90811876 MsG0180005358.01.T01:CDS
TCCTAGTGTTTGTGAATACA+TGG 0.528394 1:+90811047 MsG0180005358.01.T01:CDS
CGGCCCTAGTGATACTCACT+TGG 0.529910 1:+90811404 MsG0180005358.01.T01:CDS
TTTGTTCAACACAATTGGCT+GGG 0.538613 1:-90810755 None:intergenic
CATCAATAAAGCATTGGTTG+AGG 0.540608 1:+90811641 MsG0180005358.01.T01:CDS
ACCTTCTTAAAGATGTTCCC+GGG 0.543150 1:+90811604 MsG0180005358.01.T01:CDS
ATGTTCTTTGAAACAATCCC+GGG 0.547822 1:-90811621 None:intergenic
CGCAATGCTCAAAGGGCAGA+AGG 0.548900 1:+90810699 MsG0180005358.01.T01:CDS
AGAAAGAAGTCGGCTCAAGA+TGG 0.555109 1:+90811855 MsG0180005358.01.T01:CDS
AGGTTGCTTTGCAGGAGGCA+CGG 0.555669 1:+90811293 MsG0180005358.01.T01:CDS
GGACAAGCACTATTTGGAGA+TGG 0.563405 1:+90811438 MsG0180005358.01.T01:CDS
TTCACTAAGCACTTCTCTGG+TGG 0.567752 1:-90811784 None:intergenic
TCCCGGGAACATCTTTAAGA+AGG 0.569831 1:-90811605 None:intergenic
AGGCATGTCTACACCACTTG+TGG 0.569916 1:-90811199 None:intergenic
GCAAGACATGGTGGTTGTAG+AGG 0.570536 1:+90811089 MsG0180005358.01.T01:CDS
ACAAGTGGTGTAGACATGCC+TGG 0.572074 1:+90811201 MsG0180005358.01.T01:CDS
CACGGGAGAAGGACTTGAGT+GGG 0.572386 1:+90811887 MsG0180005358.01.T01:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 1:-90811431 None:intergenic
TCTTGCCTAGCATCCAATGA+AGG 0.579296 1:-90811072 None:intergenic
AGATGAAATGAGAAAGAAGT+CGG 0.582002 1:+90811845 MsG0180005358.01.T01:CDS
AGAGGTACCTAGATTAGGGA+AGG 0.585699 1:+90811107 MsG0180005358.01.T01:CDS
CAATTGCTCCAGATAGTGAA+GGG 0.593639 1:+90811541 MsG0180005358.01.T01:CDS
TTGATCGTTTGCACCACAAG+TGG 0.595788 1:+90811186 MsG0180005358.01.T01:CDS
CAAGATGGACTGAAGACCAC+GGG 0.604373 1:+90811870 MsG0180005358.01.T01:CDS
ACAATTGCTCCAGATAGTGA+AGG 0.608112 1:+90811540 MsG0180005358.01.T01:CDS
CCACTCAAGTCCTTCTCCCG+TGG 0.610390 1:-90811886 None:intergenic
ACGGTTTCAATGGTAAGCCC+CGG 0.611403 1:-90811930 None:intergenic
GGTACCTAGATTAGGGAAGG+AGG 0.615819 1:+90811110 MsG0180005358.01.T01:CDS
TTGTAATCAGAAATTCCCAA+TGG 0.619803 1:-90811672 None:intergenic
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 1:+90811347 MsG0180005358.01.T01:CDS
CAACAAGGTTGCTTTGCAGG+AGG 0.634702 1:+90811288 MsG0180005358.01.T01:CDS
CCACGGGAGAAGGACTTGAG+TGG 0.645541 1:+90811886 MsG0180005358.01.T01:CDS
ATTGGATGCTAGGCAAGACA+TGG 0.648366 1:+90811077 MsG0180005358.01.T01:CDS
CAATGGCTAAAATGGTTGCA+GGG 0.655281 1:-90810722 None:intergenic
GTAAAAGCTATAAAAGAATG+GGG 0.663083 1:+90811138 MsG0180005358.01.T01:CDS
TCAAGATGGACTGAAGACCA+CGG 0.668535 1:+90811869 MsG0180005358.01.T01:CDS
TGTCCAAGTGAGTATCACTA+GGG 0.674277 1:-90811407 None:intergenic
GCCATGTATTCACAAACACT+AGG 0.680230 1:-90811048 None:intergenic
GATTTGGCTGAGAACAACAA+AGG 0.683242 1:+90811333 MsG0180005358.01.T01:CDS
AGTGACACTACGCAAAACAA+CGG 0.695175 1:-90811949 None:intergenic
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 1:-90811578 None:intergenic
AATTGCTCCAGATAGTGAAG+GGG 0.700404 1:+90811542 MsG0180005358.01.T01:CDS
AGGTATATGATGTACCAACA+AGG 0.704257 1:+90811273 MsG0180005358.01.T01:CDS
CTAGAATTGCAGGTCCACCA+GGG 0.711261 1:-90811716 None:intergenic
GAGATACATGTACCTAACAG+AGG 0.713175 1:+90811008 MsG0180005358.01.T01:CDS
ACGGGAGAAGGACTTGAGTG+GGG 0.725736 1:+90811888 MsG0180005358.01.T01:CDS
GGATGCTAGGCAAGACATGG+TGG 0.737305 1:+90811080 MsG0180005358.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAGCTATAAAAGAAT+GGG + Chr1:90811137-90811156 MsG0180005358.01.T01:CDS 20.0%
!! GATAGCAAAATATGTTTAAA+TGG - Chr1:90810901-90810920 None:intergenic 20.0%
!!! ATATTTTGCTATCTTTACAT+TGG + Chr1:90810908-90810927 MsG0180005358.01.T01:intron 20.0%
! AAAATAGGTTTCTCAATTTC+TGG - Chr1:90811498-90811517 None:intergenic 25.0%
! AAAGAACATCAATAAAGCAT+TGG + Chr1:90811635-90811654 MsG0180005358.01.T01:CDS 25.0%
! ATTTCTTCATAATTACCTTC+AGG + Chr1:90810964-90810983 MsG0180005358.01.T01:intron 25.0%
! CAGTAAAAGCTATAAAAGAA+TGG + Chr1:90811136-90811155 MsG0180005358.01.T01:CDS 25.0%
! GTAAAAGCTATAAAAGAATG+GGG + Chr1:90811138-90811157 MsG0180005358.01.T01:CDS 25.0%
! GTGATAAATCTATGATCAAA+AGG + Chr1:90810986-90811005 MsG0180005358.01.T01:CDS 25.0%
! TATCTAAAAAAGTTAGGTAG+AGG - Chr1:90810874-90810893 None:intergenic 25.0%
!! ATCATATACCTTTTTACGTA+TGG - Chr1:90811264-90811283 None:intergenic 25.0%
!! CTGATTACAATTCAATCTTT+TGG + Chr1:90811685-90811704 MsG0180005358.01.T01:CDS 25.0%
!!! GGAAAGTATCTAAAAAAGTT+AGG - Chr1:90810880-90810899 None:intergenic 25.0%
!!! GTGATTTTAAAGTAGAAATC+AGG - Chr1:90810789-90810808 None:intergenic 25.0%
!!! TTTCATCTTTTCAGGTTTTA+AGG - Chr1:90811763-90811782 None:intergenic 25.0%
AAAAATACTTACACATGCGT+TGG - Chr1:90810848-90810867 None:intergenic 30.0%
AGATGAAATGAGAAAGAAGT+CGG + Chr1:90811845-90811864 MsG0180005358.01.T01:CDS 30.0%
ATCATAGATTTATCACCTGA+AGG - Chr1:90810982-90811001 None:intergenic 30.0%
GATATTAGTTCAGCAAACTT+GGG - Chr1:90810944-90810963 None:intergenic 30.0%
TGATATTAGTTCAGCAAACT+TGG - Chr1:90810945-90810964 None:intergenic 30.0%
TTGTAATCAGAAATTCCCAA+TGG - Chr1:90811675-90811694 None:intergenic 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - Chr1:90811168-90811187 None:intergenic 30.0%
!!! AACCTATTTTTGAGATGGTT+TGG + Chr1:90811508-90811527 MsG0180005358.01.T01:CDS 30.0%
!!! TGAGAAACCTATTTTTGAGA+TGG + Chr1:90811503-90811522 MsG0180005358.01.T01:CDS 30.0%
AGGTATATGATGTACCAACA+AGG + Chr1:90811273-90811292 MsG0180005358.01.T01:CDS 35.0%
ATATTCACTAAGCACTTCTC+TGG - Chr1:90811790-90811809 None:intergenic 35.0%
CTTTCAAAATCTCCTCTGTT+AGG - Chr1:90811023-90811042 None:intergenic 35.0%
GTCCAAACCATCTCAAAAAT+AGG - Chr1:90811513-90811532 None:intergenic 35.0%
TACCAACTCACAAAACTCTT+AGG + Chr1:90811231-90811250 MsG0180005358.01.T01:CDS 35.0%
TCCTAGTGTTTGTGAATACA+TGG + Chr1:90811047-90811066 MsG0180005358.01.T01:CDS 35.0%
TTTGTTCAACACAATTGGCT+GGG - Chr1:90810758-90810777 None:intergenic 35.0%
! TCTACTTGATCTAGAATTGC+AGG - Chr1:90811729-90811748 None:intergenic 35.0%
! TGTGCTTTGTTCAACACAAT+TGG - Chr1:90810763-90810782 None:intergenic 35.0%
!! AGAGAAGTGCTTAGTGAATA+TGG + Chr1:90811789-90811808 MsG0180005358.01.T01:CDS 35.0%
!! ATGTTCTTTGAAACAATCCC+GGG - Chr1:90811624-90811643 None:intergenic 35.0%
!! CATCAATAAAGCATTGGTTG+AGG + Chr1:90811641-90811660 MsG0180005358.01.T01:CDS 35.0%
!! GATGTTCTTTGAAACAATCC+CGG - Chr1:90811625-90811644 None:intergenic 35.0%
!! GGTTTCTCAATTTCTGGTAT+TGG - Chr1:90811492-90811511 None:intergenic 35.0%
!! TTGTAGAGGTACCTAGATTA+GGG + Chr1:90811103-90811122 MsG0180005358.01.T01:CDS 35.0%
!!! TGTTTTATTTGGCTTTGGAC+CGG + Chr1:90811911-90811930 MsG0180005358.01.T01:CDS 35.0%
AATTGCTCCAGATAGTGAAG+GGG + Chr1:90811542-90811561 MsG0180005358.01.T01:CDS 40.0%
ACAATTGCTCCAGATAGTGA+AGG + Chr1:90811540-90811559 MsG0180005358.01.T01:CDS 40.0%
ACCTTCTTAAAGATGTTCCC+GGG + Chr1:90811604-90811623 MsG0180005358.01.T01:CDS 40.0%
ACGCAAAACAACGGTTTCAA+TGG - Chr1:90811943-90811962 None:intergenic 40.0%
AGTGACACTACGCAAAACAA+CGG - Chr1:90811952-90811971 None:intergenic 40.0%
CAAATAGTGCTTGTCCAACA+AGG - Chr1:90811434-90811453 None:intergenic 40.0%
CAATGGCTAAAATGGTTGCA+GGG - Chr1:90810725-90810744 None:intergenic 40.0%
CAATTGCTCCAGATAGTGAA+GGG + Chr1:90811541-90811560 MsG0180005358.01.T01:CDS 40.0%
CACCTTCTTAAAGATGTTCC+CGG + Chr1:90811603-90811622 MsG0180005358.01.T01:CDS 40.0%
CGAAATTCGCAATGCTCAAA+GGG + Chr1:90810692-90810711 MsG0180005358.01.T01:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG + Chr1:90811432-90811451 MsG0180005358.01.T01:CDS 40.0%
CTTTGTTCAACACAATTGGC+TGG - Chr1:90810759-90810778 None:intergenic 40.0%
GAGATACATGTACCTAACAG+AGG + Chr1:90811008-90811027 MsG0180005358.01.T01:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG + Chr1:90811333-90811352 MsG0180005358.01.T01:CDS 40.0%
GCCATGTATTCACAAACACT+AGG - Chr1:90811051-90811070 None:intergenic 40.0%
GCTTCGTTTGGCTAAAGATT+TGG + Chr1:90811317-90811336 MsG0180005358.01.T01:CDS 40.0%
GTCTTCGTCCATACGTAAAA+AGG + Chr1:90811253-90811272 MsG0180005358.01.T01:CDS 40.0%
TGAATACATGGCACCTTCAT+TGG + Chr1:90811059-90811078 MsG0180005358.01.T01:CDS 40.0%
TGCAGTTCCAATGGCTAAAA+TGG - Chr1:90810733-90810752 None:intergenic 40.0%
TGTCCAAGTGAGTATCACTA+GGG - Chr1:90811410-90811429 None:intergenic 40.0%
! CCTTTGAGCATTGCGAATTT+CGG - Chr1:90810694-90810713 None:intergenic 40.0%
! GTTGAGGCTTTTGAACCATT+GGG + Chr1:90811657-90811676 MsG0180005358.01.T01:CDS 40.0%
!! CTTGAGTGGGGTGTTTTATT+TGG + Chr1:90811900-90811919 MsG0180005358.01.T01:CDS 40.0%
!! GACCTAAGAGTTTTGTGAGT+TGG - Chr1:90811236-90811255 None:intergenic 40.0%
!! GTTGTAGAGGTACCTAGATT+AGG + Chr1:90811102-90811121 MsG0180005358.01.T01:CDS 40.0%
!!! GTTTTATTTGGCTTTGGACC+GGG + Chr1:90811912-90811931 MsG0180005358.01.T01:CDS 40.0%
!!! TGGGGTGTTTTATTTGGCTT+TGG + Chr1:90811906-90811925 MsG0180005358.01.T01:CDS 40.0%
!!! TTTTATTTGGCTTTGGACCG+GGG + Chr1:90811913-90811932 MsG0180005358.01.T01:CDS 40.0%
ATGTTAGTCCAGCTTCACGA+AGG - Chr1:90811581-90811600 None:intergenic 45.0%
ATTGGATGCTAGGCAAGACA+TGG + Chr1:90811077-90811096 MsG0180005358.01.T01:CDS 45.0%
CCAATGGCTAAAATGGTTGC+AGG - Chr1:90810726-90810745 None:intergenic 45.0%
CCGAAATTCGCAATGCTCAA+AGG + Chr1:90810691-90810710 MsG0180005358.01.T01:CDS 45.0%
CTGTCCAAGTGAGTATCACT+AGG - Chr1:90811411-90811430 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG + Chr1:90811438-90811457 MsG0180005358.01.T01:CDS 45.0%
GTCACTGCAGTTACATTTCG+CGG + Chr1:90811384-90811403 MsG0180005358.01.T01:CDS 45.0%
TCTTGCCTAGCATCCAATGA+AGG - Chr1:90811075-90811094 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG - Chr1:90811568-90811587 None:intergenic 45.0%
TTCACTAAGCACTTCTCTGG+TGG - Chr1:90811787-90811806 None:intergenic 45.0%
TTGATCGTTTGCACCACAAG+TGG + Chr1:90811186-90811205 MsG0180005358.01.T01:CDS 45.0%
! AGAAAGAAGTCGGCTCAAGA+TGG + Chr1:90811855-90811874 MsG0180005358.01.T01:CDS 45.0%
! ATCTTTTGGATTGCACACCC+TGG + Chr1:90811699-90811718 MsG0180005358.01.T01:CDS 45.0%
! CTGGTGGCTTTCATCTTTTC+AGG - Chr1:90811771-90811790 None:intergenic 45.0%
! GGTTGAGGCTTTTGAACCAT+TGG + Chr1:90811656-90811675 MsG0180005358.01.T01:CDS 45.0%
! TACCAACAAGGTTGCTTTGC+AGG + Chr1:90811285-90811304 MsG0180005358.01.T01:CDS 45.0%
! TCCCGGGAACATCTTTAAGA+AGG - Chr1:90811608-90811627 None:intergenic 45.0%
!! AGAGGTACCTAGATTAGGGA+AGG + Chr1:90811107-90811126 MsG0180005358.01.T01:CDS 45.0%
!! CCTGCAACCATTTTAGCCAT+TGG + Chr1:90810723-90810742 MsG0180005358.01.T01:CDS 45.0%
!! TCAAGATGGACTGAAGACCA+CGG + Chr1:90811869-90811888 MsG0180005358.01.T01:CDS 45.0%
ACAAGTGGTGTAGACATGCC+TGG + Chr1:90811201-90811220 MsG0180005358.01.T01:CDS 50.0%
ACGGTTTCAATGGTAAGCCC+CGG - Chr1:90811933-90811952 None:intergenic 50.0%
AGGCATGTCTACACCACTTG+TGG - Chr1:90811202-90811221 None:intergenic 50.0%
CTAGAATTGCAGGTCCACCA+GGG - Chr1:90811719-90811738 None:intergenic 50.0%
CTCCTGCAAAGCAACCTTGT+TGG - Chr1:90811290-90811309 None:intergenic 50.0%
GATAGTGAAGGGGCCATTGA+TGG + Chr1:90811552-90811571 MsG0180005358.01.T01:CDS 50.0%
GCAAGACATGGTGGTTGTAG+AGG + Chr1:90811089-90811108 MsG0180005358.01.T01:CDS 50.0%
GGTACCTAGATTAGGGAAGG+AGG + Chr1:90811110-90811129 MsG0180005358.01.T01:CDS 50.0%
TCAATGGCCCCTTCACTATC+TGG - Chr1:90811552-90811571 None:intergenic 50.0%
TGGCACCTTCATTGGATGCT+AGG + Chr1:90811067-90811086 MsG0180005358.01.T01:CDS 50.0%
! ACTCACTTGGACAGCCTTGT+TGG + Chr1:90811417-90811436 MsG0180005358.01.T01:CDS 50.0%
! CAACAAGGTTGCTTTGCAGG+AGG + Chr1:90811288-90811307 MsG0180005358.01.T01:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+AGG - Chr1:90811720-90811739 None:intergenic 50.0%
! TTTTGGATTGCACACCCTGG+TGG + Chr1:90811702-90811721 MsG0180005358.01.T01:CDS 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG + Chr1:90811347-90811366 MsG0180005358.01.T01:CDS 50.0%
!! CAAGATGGACTGAAGACCAC+GGG + Chr1:90811870-90811889 MsG0180005358.01.T01:CDS 50.0%
!! GTGAGTTGGTAATCAGCTCC+AGG - Chr1:90811222-90811241 None:intergenic 50.0%
ACGGGAGAAGGACTTGAGTG+GGG + Chr1:90811888-90811907 MsG0180005358.01.T01:CDS 55.0%
CACGGGAGAAGGACTTGAGT+GGG + Chr1:90811887-90811906 MsG0180005358.01.T01:CDS 55.0%
CGCAATGCTCAAAGGGCAGA+AGG + Chr1:90810699-90810718 MsG0180005358.01.T01:CDS 55.0%
CGGCCCTAGTGATACTCACT+TGG + Chr1:90811404-90811423 MsG0180005358.01.T01:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG + Chr1:90811570-90811589 MsG0180005358.01.T01:CDS 55.0%
GCAGCCTCCTTCCCTAATCT+AGG - Chr1:90811117-90811136 None:intergenic 55.0%
GGATGCTAGGCAAGACATGG+TGG + Chr1:90811080-90811099 MsG0180005358.01.T01:CDS 55.0%
GGCTGGGTTTGCAGTTCCAA+TGG - Chr1:90810742-90810761 None:intergenic 55.0%
! AGGTTGCTTTGCAGGAGGCA+CGG + Chr1:90811293-90811312 MsG0180005358.01.T01:CDS 55.0%
!! GGAGCTGCTGCACTGATTGT+TGG + Chr1:90811459-90811478 MsG0180005358.01.T01:CDS 55.0%
CCACGGGAGAAGGACTTGAG+TGG + Chr1:90811886-90811905 MsG0180005358.01.T01:CDS 60.0%
CCACTCAAGTCCTTCTCCCG+TGG - Chr1:90811889-90811908 None:intergenic 60.0%
GGACTGAAGACCACGGGAGA+AGG + Chr1:90811876-90811895 MsG0180005358.01.T01:CDS 60.0%
! AGGAGGCACGGTGCTTCGTT+TGG + Chr1:90811305-90811324 MsG0180005358.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 90810678 90811977 90810678 ID=MsG0180005358.01;Name=MsG0180005358.01
Chr1 mRNA 90810678 90811977 90810678 ID=MsG0180005358.01.T01;Parent=MsG0180005358.01;Name=MsG0180005358.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|389
Chr1 exon 90810678 90810855 90810678 ID=MsG0180005358.01.T01:exon:11555;Parent=MsG0180005358.01.T01
Chr1 exon 90810986 90811977 90810986 ID=MsG0180005358.01.T01:exon:11556;Parent=MsG0180005358.01.T01
Chr1 CDS 90810678 90810855 90810678 ID=MsG0180005358.01.T01:cds;Parent=MsG0180005358.01.T01
Chr1 CDS 90810986 90811977 90810986 ID=MsG0180005358.01.T01:cds;Parent=MsG0180005358.01.T01
Gene Sequence

>MsG0180005358.01.T01

ATGGTAAGTGTGTCCGAAATTCGCAATGCTCAAAGGGCAGAAGGCCCTGCAACCATTTTAGCCATTGGAACTGCAAACCCAGCCAATTGTGTTGAACAAAGCACATATCCTGATTTCTACTTTAAAATCACTAATAGTGAACATAAGACTGAACTCAAAGAAAAATTCCAACGCATGTGTGATAAATCTATGATCAAAAGGAGATACATGTACCTAACAGAGGAGATTTTGAAAGAGAATCCTAGTGTTTGTGAATACATGGCACCTTCATTGGATGCTAGGCAAGACATGGTGGTTGTAGAGGTACCTAGATTAGGGAAGGAGGCTGCAGTAAAAGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTGATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCTGATTACCAACTCACAAAACTCTTAGGTCTTCGTCCATACGTAAAAAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGAGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAAGTCACTGCAGTTACATTTCGCGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTGATTGTTGGTTCAGATCCAATACCAGAAATTGAGAAACCTATTTTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGATAGTGAAGGGGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCCGGGATTGTTTCAAAGAACATCAATAAAGCATTGGTTGAGGCTTTTGAACCATTGGGAATTTCTGATTACAATTCAATCTTTTGGATTGCACACCCTGGTGGACCTGCAATTCTAGATCAAGTAGAGCAGAAGTTAGCCTTAAAACCTGAAAAGATGAAAGCCACCAGAGAAGTGCTTAGTGAATATGGAAATATGTCAAGTGCTTGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAGTCGGCTCAAGATGGACTGAAGACCACGGGAGAAGGACTTGAGTGGGGTGTTTTATTTGGCTTTGGACCGGGGCTTACCATTGAAACCGTTGTTTTGCGTAGTGTCACTATATGA

Protein sequence

>MsG0180005358.01.T01

MVSVSEIRNAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVTI*