AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004393.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004393.01.T01 MTR_1g078290 71.495 214 19 3 5 176 168 381 5.13e-101 302
MsG0180004393.01.T01 MTR_1g078290 68.394 193 19 3 5 155 168 360 7.15e-86 262
MsG0180004393.01.T01 MTR_1g078290 68.394 193 19 3 5 155 168 360 3.87e-85 261
MsG0180004393.01.T01 MTR_1g078290 77.692 130 10 1 5 115 168 297 1.02e-67 214
MsG0180004393.01.T01 MTR_2g005330 48.913 184 56 3 5 151 23 205 6.41e-55 179
MsG0180004393.01.T01 MTR_2g005330 48.913 184 56 3 5 151 165 347 6.17e-54 180
MsG0180004393.01.T01 MTR_2g005330 52.071 169 43 3 5 136 165 332 2.81e-53 177
MsG0180004393.01.T01 MTR_2g012570 43.269 208 64 4 5 176 164 353 3.04e-48 164
MsG0180004393.01.T01 MTR_2g012570 43.269 208 64 4 5 176 138 327 3.59e-48 164
MsG0180004393.01.T01 MTR_2g012570 50.000 168 48 3 5 136 138 305 1.03e-47 164
MsG0180004393.01.T01 MTR_2g012570 50.000 168 48 3 5 136 164 331 1.03e-47 164
MsG0180004393.01.T01 MTR_4g090465 50.000 168 48 3 5 136 512 679 4.06e-45 162
MsG0180004393.01.T01 MTR_3g086610 44.578 166 61 2 5 139 184 349 1.59e-40 145
MsG0180004393.01.T01 MTR_3g086610 44.578 166 61 2 5 139 184 349 1.97e-40 145
MsG0180004393.01.T01 MTR_4g058800 39.698 199 85 3 5 172 163 357 4.35e-40 144
MsG0180004393.01.T01 MTR_8g089820 43.976 166 62 2 5 139 175 340 6.12e-40 144
MsG0180004393.01.T01 MTR_8g089815 43.373 166 63 2 5 139 183 348 1.73e-39 142
MsG0180004393.01.T01 MTR_7g033300 42.515 167 64 2 5 139 174 340 3.98e-39 141
MsG0180004393.01.T01 MTR_2g094650 38.554 166 71 2 5 139 180 345 1.65e-34 129
MsG0180004393.01.T01 MTR_2g094650 38.323 167 71 2 5 139 180 346 2.32e-34 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004393.01.T01 AT4G18530 53.763 186 48 3 5 153 160 344 8.45e-59 193
MsG0180004393.01.T01 AT4G18530 53.763 186 48 3 5 153 155 339 1.06e-58 192
MsG0180004393.01.T01 AT4G12840 46.154 221 74 6 5 185 67 282 8.08e-55 180
MsG0180004393.01.T01 AT4G12840 46.154 221 74 6 5 185 161 376 1.25e-54 182
MsG0180004393.01.T01 AT4G12840 46.154 221 74 6 5 185 161 376 1.53e-54 182
MsG0180004393.01.T01 AT1G11170 46.154 195 66 4 3 158 167 361 1.09e-49 169
MsG0180004393.01.T01 AT1G11170 46.448 183 62 3 3 149 167 349 1.40e-48 167
MsG0180004393.01.T01 AT1G11170 46.448 183 62 3 3 149 167 349 1.40e-48 167
MsG0180004393.01.T01 AT1G11170 46.448 183 62 3 3 149 167 349 1.40e-48 167
MsG0180004393.01.T01 AT1G11170 46.448 183 62 3 3 149 167 349 1.40e-48 167
MsG0180004393.01.T01 AT4G18530 59.231 130 33 2 5 115 160 288 1.40e-48 164
MsG0180004393.01.T01 AT1G11170 48.295 176 55 3 3 142 167 342 1.58e-48 165
MsG0180004393.01.T01 AT1G11170 48.295 176 55 3 3 142 167 342 1.58e-48 165
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 99 266 2.62e-46 160
MsG0180004393.01.T01 AT1G61240 45.550 191 67 4 5 158 166 356 9.42e-46 158
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT1G61240 48.810 168 50 3 5 136 166 333 1.07e-45 160
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 158 325 1.55e-42 150
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 205 372 1.67e-42 151
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 182 349 1.93e-42 150
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 182 349 1.93e-42 150
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 205 372 1.96e-42 151
MsG0180004393.01.T01 AT3G26440 45.238 168 61 2 5 141 182 349 3.20e-42 149
MsG0180004393.01.T01 AT1G11170 51.449 138 49 2 3 122 167 304 6.30e-41 145
MsG0180004393.01.T01 AT1G13000 43.976 166 62 2 5 139 191 356 2.03e-40 145
MsG0180004393.01.T01 AT1G13000 43.976 166 62 2 5 139 191 356 2.03e-40 145
MsG0180004393.01.T01 AT1G13000 43.976 166 62 2 5 139 191 356 2.03e-40 145
MsG0180004393.01.T01 AT1G13000 43.976 166 62 2 5 139 191 356 2.03e-40 145
MsG0180004393.01.T01 AT3G27470 44.578 166 61 2 5 139 183 348 4.03e-40 144
MsG0180004393.01.T01 AT3G27470 44.578 166 61 2 5 139 183 348 4.03e-40 144
MsG0180004393.01.T01 AT3G27470 44.578 166 61 2 5 139 183 348 4.03e-40 144
MsG0180004393.01.T01 AT3G27470 44.578 166 61 2 5 139 183 348 4.03e-40 144
MsG0180004393.01.T01 AT3G27470 44.578 166 61 2 5 139 183 348 6.51e-40 144
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 171 336 5.35e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G67850 43.373 166 63 2 5 139 187 352 9.05e-39 141
MsG0180004393.01.T01 AT1G24570 43.713 167 62 3 5 139 164 330 1.96e-38 139
MsG0180004393.01.T01 AT1G24570 43.713 167 62 3 5 139 171 337 2.45e-38 139
MsG0180004393.01.T01 AT2G28310 42.169 166 65 2 5 139 167 332 2.95e-38 139
MsG0180004393.01.T01 AT2G28310 42.169 166 65 2 5 139 167 332 2.95e-38 139
MsG0180004393.01.T01 AT2G28310 42.169 166 65 2 5 139 167 332 2.95e-38 139
MsG0180004393.01.T01 AT1G08040 41.566 166 66 2 5 139 170 335 3.39e-38 139
MsG0180004393.01.T01 AT1G08040 41.566 166 66 2 5 139 174 339 4.10e-38 139
MsG0180004393.01.T01 AT1G08040 41.566 166 66 2 5 139 174 339 4.10e-38 139
MsG0180004393.01.T01 AT1G08040 41.566 166 66 2 5 139 174 339 4.10e-38 139
MsG0180004393.01.T01 AT1G13000 48.485 132 54 1 5 122 191 322 1.08e-36 134
MsG0180004393.01.T01 AT1G11170 73.529 68 18 0 3 70 167 234 5.14e-29 112
MsG0180004393.01.T01 AT2G25905 70.968 62 18 0 5 66 165 226 1.48e-24 99.4

Find 115 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGAGCTGAGACCTTTA+TGG 0.208347 1:-77395195 MsG0180004393.01.T01:five_prime_UTR
GATTCTTCTTACCTTGTTAT+AGG 0.211195 1:+77389242 None:intergenic
TTGATCAGTTTGAGAGAAAA+AGG 0.269539 1:-77396209 MsG0180004393.01.T01:five_prime_UTR
AAAGATACATTACATAAATA+AGG 0.289084 1:-77396007 MsG0180004393.01.T01:intron
CCACGCAGCTCTTGGAAAAC+AGG 0.298962 1:+77393821 None:intergenic
TCGTCAAATTTCCATCATAA+TGG 0.317165 1:+77394621 None:intergenic
CGATACGTAGAGCGTATTCT+TGG 0.320190 1:-77389317 MsG0180004393.01.T01:CDS
TGTTTATATGTAATCTTTCC+AGG 0.322021 1:-77395583 MsG0180004393.01.T01:five_prime_UTR
TAAACGTGTCATAGCGGTTA+AGG 0.339807 1:+77389275 None:intergenic
TTGTGTCTGGTACATGATTC+AGG 0.381583 1:-77393796 MsG0180004393.01.T01:intron
GCAGGTGATGACTTGATATC+TGG 0.391084 1:+77395816 None:intergenic
GGGGTTTCCACTAGAGGAAA+TGG 0.401284 1:-77389720 MsG0180004393.01.T01:CDS
AGGTATTGTACATACTTCTC+AGG 0.405666 1:+77394342 None:intergenic
AGTCTCGAGTACTTCGAGTT+TGG 0.408882 1:-77395212 MsG0180004393.01.T01:five_prime_UTR
GTACCCGCTGCAGGATGTTA+TGG 0.409687 1:-77388979 MsG0180004393.01.T01:CDS
GGTTCACACTAGGTTGGCTC+AGG 0.411039 1:-77389741 MsG0180004393.01.T01:CDS
ACATTTAAAGCTGTTATTGA+TGG 0.416811 1:-77393992 MsG0180004393.01.T01:CDS
GAGCTGCGTGGCGTTGTGTC+TGG 0.432485 1:-77393809 MsG0180004393.01.T01:CDS
AACTGCCATCGCAAACAAGC+TGG 0.436034 1:+77394802 None:intergenic
GTTTCTATTGTCAAAGAAGA+AGG 0.437319 1:-77394207 MsG0180004393.01.T01:CDS
AAAGATTTAGTTTGACAAGA+TGG 0.444788 1:-77394769 MsG0180004393.01.T01:five_prime_UTR
GACGAATGGAAGAATTCAAA+TGG 0.447333 1:-77394603 MsG0180004393.01.T01:five_prime_UTR
ACACAACGCCACGCAGCTCT+TGG 0.453218 1:+77393813 None:intergenic
GGGTTTCCACTAGAGGAAAT+GGG 0.454756 1:-77389719 MsG0180004393.01.T01:CDS
TGCATACTTATGATAGATGC+AGG 0.458594 1:-77395374 MsG0180004393.01.T01:five_prime_UTR
AAAGCTGTTATTGATGGTAA+AGG 0.462651 1:-77393986 MsG0180004393.01.T01:CDS
CCATTCTTCGACATCCATAA+AGG 0.463933 1:+77395181 None:intergenic
TGCAGGTTTCAGATCATCTC+AGG 0.465823 1:-77393131 MsG0180004393.01.T01:intron
CATATAGCGGTAGTCGATCA+AGG 0.469047 1:-77394567 MsG0180004393.01.T01:CDS
TGTCCCTTGTGGTTCACACT+AGG 0.469224 1:-77389751 MsG0180004393.01.T01:CDS
CGCCACTGAGGGAGTGCCAT+TGG 0.471708 1:-77389675 MsG0180004393.01.T01:intron
AAACGTGTCATAGCGGTTAA+GGG 0.473789 1:+77389276 None:intergenic
TGTTCGTTCGTACCCGCTGC+AGG 0.482367 1:-77388988 MsG0180004393.01.T01:CDS
AACAAATAATAAAAGTGCCC+TGG 0.488154 1:+77395565 None:intergenic
CCTTGTGGTTCACACTAGGT+TGG 0.489665 1:-77389747 MsG0180004393.01.T01:CDS
TTTCAGATCATCTCAGGAAA+AGG 0.492289 1:-77393125 MsG0180004393.01.T01:CDS
TTTGTTTCAGATAAACAAGT+TGG 0.496014 1:-77389047 MsG0180004393.01.T01:intron
TCATACTCAGCAACTATGTC+GGG 0.496770 1:+77394411 None:intergenic
AGTTGGTTGACGAAAGGAGC+GGG 0.499875 1:+77396049 None:intergenic
TTTCTATTGTCAAAGAAGAA+GGG 0.503868 1:-77394206 MsG0180004393.01.T01:CDS
TATTATATGTCGTAGAGCCT+TGG 0.507105 1:-77389503 MsG0180004393.01.T01:intron
CACGCAGCTCTTGGAAAACA+GGG 0.508779 1:+77393822 None:intergenic
ATATCAAGTCATCACCTGCT+AGG 0.510981 1:-77395812 MsG0180004393.01.T01:five_prime_UTR
GGCACTCCCTCAGTGGCGTG+CGG 0.515007 1:+77389680 None:intergenic
GGCTCAGGGGTTTCCACTAG+AGG 0.517240 1:-77389726 MsG0180004393.01.T01:CDS
TTTCAGATAAACAAGTTGGT+TGG 0.518072 1:-77389043 MsG0180004393.01.T01:intron
TTGTTTAGTAGAAGCAGTGC+AGG 0.518852 1:-77395266 MsG0180004393.01.T01:intron
ATCATACTCAGCAACTATGT+CGG 0.519378 1:+77394410 None:intergenic
TATGATGGAAATTTGACGAA+TGG 0.520550 1:-77394617 MsG0180004393.01.T01:five_prime_UTR
GTTCACACTAGGTTGGCTCA+GGG 0.521739 1:-77389740 MsG0180004393.01.T01:CDS
AGCACAGCTCCTCCTTGCAC+CGG 0.522368 1:-77393950 MsG0180004393.01.T01:CDS
CGGTAGTCGATCAAGGCAAA+TGG 0.523052 1:-77394560 MsG0180004393.01.T01:intron
ACAATTGAGACAAGACACTT+TGG 0.529978 1:-77392398 MsG0180004393.01.T01:CDS
GACACTTTGGAGAGTCTCAA+AGG 0.531215 1:-77392385 MsG0180004393.01.T01:CDS
ATCACCCAGCTTGTTTGCGA+TGG 0.531507 1:-77394807 MsG0180004393.01.T01:five_prime_UTR
AAGAGGTTACGTACCCTAGC+AGG 0.531533 1:+77395798 None:intergenic
TTAAAGATAAGAGAGAGAGT+TGG 0.539047 1:+77396032 None:intergenic
GCACTCCCTCAGTGGCGTGC+GGG 0.540153 1:+77389681 None:intergenic
GTTATCTGTGCCTCCAGAGT+GGG 0.541841 1:+77393268 None:intergenic
CCTTTATGGATGTCGAAGAA+TGG 0.547576 1:-77395181 MsG0180004393.01.T01:five_prime_UTR
ATCGCAAACAAGCTGGGTGA+TGG 0.548450 1:+77394809 None:intergenic
TTAATTATTTACCCGGTGCA+AGG 0.552167 1:+77393938 None:intergenic
TCACTACAATCGTCCCACTC+TGG 0.555295 1:-77393281 MsG0180004393.01.T01:CDS
AGTGGCGTGCGGGATCCTTA+CGG 0.555880 1:+77389691 None:intergenic
GTTTATATGTAATCTTTCCA+GGG 0.556224 1:-77395582 MsG0180004393.01.T01:five_prime_UTR
AGGAAATGGGGTTAGCCGTA+AGG 0.558391 1:-77389706 MsG0180004393.01.T01:CDS
TTCAGATGGATAGAAATGAA+TGG 0.558906 1:-77393846 MsG0180004393.01.T01:intron
GCTAACCCCATTTCCTCTAG+TGG 0.566895 1:+77389713 None:intergenic
GAGAGTCTCAAAGGGCATCA+TGG 0.568772 1:-77392376 MsG0180004393.01.T01:intron
ACACTTTGGAGAGTCTCAAA+GGG 0.568974 1:-77392384 MsG0180004393.01.T01:CDS
TATCAAGTCATCACCTGCTA+GGG 0.571345 1:-77395811 MsG0180004393.01.T01:intron
GCACAGCTCCTCCTTGCACC+GGG 0.572784 1:-77393949 MsG0180004393.01.T01:intron
TAGAAGCAGTGCAGGCCTAG+TGG 0.573391 1:-77395258 MsG0180004393.01.T01:five_prime_UTR
AGGATCCCGCACGCCACTGA+GGG 0.573573 1:-77389686 MsG0180004393.01.T01:CDS
GTGGAAGTGAAGCGTTACCC+AGG 0.574312 1:-77395239 MsG0180004393.01.T01:five_prime_UTR
CACTTGCTGAGACATCCATT+CGG 0.576431 1:+77389009 None:intergenic
TGTCCATAACATCCTGCAGC+GGG 0.581559 1:+77388976 None:intergenic
ATTGATGGTAAAGGCTGTGA+TGG 0.584608 1:-77393977 MsG0180004393.01.T01:CDS
GATGACTTGATATCTGGCAT+TGG 0.586247 1:+77395822 None:intergenic
ACTGCCATCGCAAACAAGCT+GGG 0.589931 1:+77394803 None:intergenic
AGAGAGAGTTGGTTGACGAA+AGG 0.597733 1:+77396043 None:intergenic
TGTTATCTGTGCCTCCAGAG+TGG 0.612528 1:+77393267 None:intergenic
GGTATTGTACATACTTCTCA+GGG 0.613026 1:+77394343 None:intergenic
AACGTGTCATAGCGGTTAAG+GGG 0.614287 1:+77389277 None:intergenic
TTCCTTTGGGATGAGGACCT+AGG 0.614499 1:-77394381 MsG0180004393.01.T01:CDS
TTCACACTAGGTTGGCTCAG+GGG 0.614716 1:-77389739 MsG0180004393.01.T01:CDS
CTCCTAGGTCCTCATCCCAA+AGG 0.625352 1:+77394379 None:intergenic
AGAGCGTATTCTTGGCAATG+CGG 0.628261 1:-77389309 MsG0180004393.01.T01:CDS
ATACTCACAAAGCTACAAAG+AGG 0.632222 1:-77395520 MsG0180004393.01.T01:intron
CCAACCTAGTGTGAACCACA+AGG 0.633837 1:+77389747 None:intergenic
TTGGCGAGCTAGTAGCCGAA+TGG 0.635023 1:-77389024 MsG0180004393.01.T01:CDS
AAGGATCCCGCACGCCACTG+AGG 0.640622 1:-77389687 MsG0180004393.01.T01:CDS
AACCAATGGCACTCCCTCAG+TGG 0.642848 1:+77389673 None:intergenic
AGAATACGCTCTACGTATCG+AGG 0.645927 1:+77389320 None:intergenic
CTACAATCGTCCCACTCTGG+AGG 0.646979 1:-77393278 MsG0180004393.01.T01:CDS
AGTACTCGAGACTATACCCT+GGG 0.648301 1:+77395222 None:intergenic
AAGAAGTGAAGCCTATAACA+AGG 0.649605 1:-77389253 MsG0180004393.01.T01:intron
TGGAAGTGAAGCGTTACCCA+GGG 0.651315 1:-77395238 MsG0180004393.01.T01:five_prime_UTR
CGTAGGTGTCATGTCCCTTG+TGG 0.655181 1:-77389762 MsG0180004393.01.T01:intron
ATTATTTACCCGGTGCAAGG+AGG 0.658449 1:+77393941 None:intergenic
GCATACTTATGATAGATGCA+GGG 0.660134 1:-77395373 MsG0180004393.01.T01:intron
GTTCTTGACGATCTATGCCA+AGG 0.662409 1:+77389486 None:intergenic
ATTGTAGTGAATAATGTACT+CGG 0.667033 1:+77393294 None:intergenic
GGTTTCCACTAGAGGAAATG+GGG 0.671591 1:-77389718 MsG0180004393.01.T01:CDS
GGTAACGCTTCACTTCCACT+AGG 0.671876 1:+77395243 None:intergenic
GGAGCGGGAAGCGAAAATCA+CGG 0.672264 1:+77396064 None:intergenic
ACTTCTTAAACGTGTCATAG+CGG 0.683667 1:+77389269 None:intergenic
AATGATGAGTCGTCATATAG+CGG 0.684464 1:-77394580 MsG0180004393.01.T01:CDS
ACGCAGCTCTTGGAAAACAG+GGG 0.686423 1:+77393823 None:intergenic
GAGTTGGTTGACGAAAGGAG+CGG 0.706326 1:+77396048 None:intergenic
ATTGTACATACTTCTCAGGG+TGG 0.711500 1:+77394346 None:intergenic
AAGTACTCGAGACTATACCC+TGG 0.715297 1:+77395221 None:intergenic
CAGGATGTTATGGACATGCA+AGG 0.717311 1:-77388969 MsG0180004393.01.T01:CDS
CAACCTAGTGTGAACCACAA+GGG 0.722312 1:+77389748 None:intergenic
ATGTCCATAACATCCTGCAG+CGG 0.726086 1:+77388975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTAAATAATATAAT+AGG + Chr1:77392978-77392997 None:intergenic 0.0%
!! TAAATAATTTCTTAATGATT+TGG - Chr1:77392520-77392539 MsG0180004393.01.T01:intron 10.0%
!! TAAGAATATATGAAAAAAAT+AGG - Chr1:77389458-77389477 MsG0180004393.01.T01:intron 10.0%
!! TCTAATTTAATAAAAAAGAA+TGG + Chr1:77393584-77393603 None:intergenic 10.0%
!!! ATTTTTTTACAATAAACTAT+TGG - Chr1:77393250-77393269 MsG0180004393.01.T01:intron 10.0%
!!! TTTCTATTTTTGATATTATA+GGG - Chr1:77389501-77389520 MsG0180004393.01.T01:intron 10.0%
!! AAAGATACATTACATAAATA+AGG - Chr1:77389174-77389193 MsG0180004393.01.T01:intron 15.0%
!!! AAAAAGATTATATTTTGTGT+TGG + Chr1:77392346-77392365 None:intergenic 15.0%
!!! ATCACATTTTTATTCAATAA+GGG - Chr1:77392850-77392869 MsG0180004393.01.T01:intron 15.0%
!!! ATGATTTGCTTAAAAAATAT+TGG + Chr1:77393892-77393911 None:intergenic 15.0%
!!! GTAATGGAAAATATTTATTA+TGG - Chr1:77394016-77394035 MsG0180004393.01.T01:intron 15.0%
!!! GTTTCTATTTTTGATATTAT+AGG - Chr1:77389500-77389519 MsG0180004393.01.T01:intron 15.0%
!!! TATCACATTTTTATTCAATA+AGG - Chr1:77392849-77392868 MsG0180004393.01.T01:intron 15.0%
!!! TTAATTTTCCAAAAACATTA+AGG - Chr1:77390911-77390930 MsG0180004393.01.T01:intron 15.0%
!!! TTTTAAGCAAATCATAATTT+TGG - Chr1:77393897-77393916 MsG0180004393.01.T01:intron 15.0%
!!! TTTTTCCTTTATGATTTTAA+AGG - Chr1:77390948-77390967 MsG0180004393.01.T01:intron 15.0%
!! AAAAACTGTTAAATTCTTCT+TGG + Chr1:77388954-77388973 None:intergenic 20.0%
!! AATCACAATCATATAAAGTT+TGG - Chr1:77390876-77390895 MsG0180004393.01.T01:intron 20.0%
!! ACATCAAATAAATATCTCTT+TGG + Chr1:77394119-77394138 None:intergenic 20.0%
!! AGAGATATTTATTTGATGTT+TGG - Chr1:77394120-77394139 MsG0180004393.01.T01:intron 20.0%
!! AGTATACAAAGAGTTATTAA+TGG + Chr1:77393834-77393853 None:intergenic 20.0%
!! GATAAGTGATATTCAAAAAT+TGG + Chr1:77390697-77390716 None:intergenic 20.0%
!! GATATTCAAAAATTGGATAT+GGG + Chr1:77390690-77390709 None:intergenic 20.0%
!! GCATTTATAAACATATTTCA+TGG + Chr1:77394696-77394715 None:intergenic 20.0%
!! TAACGTAATTCAAATTCATA+AGG + Chr1:77389218-77389237 None:intergenic 20.0%
!! TATTGATCATACATATAACA+AGG + Chr1:77391832-77391851 None:intergenic 20.0%
!! TCAAATTATAAAGACTACAA+TGG + Chr1:77390307-77390326 None:intergenic 20.0%
!! TGATATTCAAAAATTGGATA+TGG + Chr1:77390691-77390710 None:intergenic 20.0%
!! TGTTATATGTATGATCAATA+GGG - Chr1:77391832-77391851 MsG0180004393.01.T01:intron 20.0%
!! TTGTTATATGTATGATCAAT+AGG - Chr1:77391831-77391850 MsG0180004393.01.T01:intron 20.0%
!! TTTCAACCATATTATCAAAA+TGG - Chr1:77393279-77393298 MsG0180004393.01.T01:CDS 20.0%
!!! AATATTTTCCTTATCACAAT+TGG - Chr1:77393629-77393648 MsG0180004393.01.T01:intron 20.0%
!!! ACATACCTTTAAAATCATAA+AGG + Chr1:77390956-77390975 None:intergenic 20.0%
!!! AGATATTTTCAAAAAACGTT+GGG - Chr1:77392603-77392622 MsG0180004393.01.T01:intron 20.0%
!!! AGGAATCAAATTTTTGTTAT+AGG - Chr1:77389478-77389497 MsG0180004393.01.T01:intron 20.0%
!!! AGTATGATTATATTTTCCTT+TGG - Chr1:77390786-77390805 MsG0180004393.01.T01:intron 20.0%
!!! AGTGATGAAGATTTTAAATA+CGG + Chr1:77390214-77390233 None:intergenic 20.0%
!!! ATCAAGATTTATGTTAGTTT+AGG - Chr1:77394616-77394635 MsG0180004393.01.T01:five_prime_UTR 20.0%
!!! CGTATTGCAATTTTTTAATA+GGG - Chr1:77393716-77393735 MsG0180004393.01.T01:intron 20.0%
!!! CTATTAGTCATTTTCATTAA+GGG + Chr1:77392392-77392411 None:intergenic 20.0%
!!! CTCTAATCAATTTTTTTTAG+AGG + Chr1:77393429-77393448 None:intergenic 20.0%
!!! GTATGATTATATTTTCCTTT+GGG - Chr1:77390787-77390806 MsG0180004393.01.T01:intron 20.0%
!!! TAGATATTTTCAAAAAACGT+TGG - Chr1:77392602-77392621 MsG0180004393.01.T01:intron 20.0%
!!! TATTTCTTTTTGACAAATCT+TGG - Chr1:77393665-77393684 MsG0180004393.01.T01:intron 20.0%
!!! TCGTATTGCAATTTTTTAAT+AGG - Chr1:77393715-77393734 MsG0180004393.01.T01:intron 20.0%
!!! TCTTTGAGAAAATTTCTTTA+AGG - Chr1:77392950-77392969 MsG0180004393.01.T01:intron 20.0%
!!! TGTGTGACTAATATATTTTT+GGG - Chr1:77392545-77392564 MsG0180004393.01.T01:intron 20.0%
!!! TTATTTTGGATGTTTAAGTT+TGG - Chr1:77389875-77389894 MsG0180004393.01.T01:intron 20.0%
!!! TTGTGTGACTAATATATTTT+TGG - Chr1:77392544-77392563 MsG0180004393.01.T01:intron 20.0%
!!! TTGTTTATCTGAAACAAATA+AGG + Chr1:77396132-77396151 None:intergenic 20.0%
!!! TTGTTTTCTCTTAATACTTT+TGG - Chr1:77389832-77389851 MsG0180004393.01.T01:intron 20.0%
! AAACTATCAAGCTTCAAAAA+TGG - Chr1:77389771-77389790 MsG0180004393.01.T01:intron 25.0%
! AAAGTGCATTTGAAAATTGT+TGG - Chr1:77393016-77393035 MsG0180004393.01.T01:intron 25.0%
! AAATAAATCGCGTAGAAATA+GGG - Chr1:77393338-77393357 MsG0180004393.01.T01:intron 25.0%
! AACGAATAACTATTGTGTAA+CGG - Chr1:77391756-77391775 MsG0180004393.01.T01:intron 25.0%
! AATTGTAAAGCACATGTAAT+AGG + Chr1:77390259-77390278 None:intergenic 25.0%
! AGTATTAGTAATGAGAAATC+TGG + Chr1:77390465-77390484 None:intergenic 25.0%
! ATCTTCATCACTATAACATA+TGG - Chr1:77390222-77390241 MsG0180004393.01.T01:intron 25.0%
! ATGAACTAAATTGTTTCAGA+TGG - Chr1:77391321-77391340 MsG0180004393.01.T01:intron 25.0%
! ATTCTAAATTGCAATGAATG+AGG + Chr1:77392200-77392219 None:intergenic 25.0%
! ATTGTAGTGAATAATGTACT+CGG + Chr1:77391890-77391909 None:intergenic 25.0%
! GCCAAAATTAATTATTTACC+CGG + Chr1:77391253-77391272 None:intergenic 25.0%
! GTTTATATGTAATCTTTCCA+GGG - Chr1:77389599-77389618 MsG0180004393.01.T01:intron 25.0%
! TAAATGCCTATATATGTTTC+TGG - Chr1:77394709-77394728 MsG0180004393.01.T01:intron 25.0%
! TAATCAACAAGAATTGCTTT+GGG + Chr1:77394662-77394681 None:intergenic 25.0%
! TATGCATAGTCAAATTCATT+AGG + Chr1:77395643-77395662 None:intergenic 25.0%
! TCTTCAACTGCATAAAATAA+GGG + Chr1:77391298-77391317 None:intergenic 25.0%
! TGTTCTTCCAAATTTCTAAA+TGG - Chr1:77389721-77389740 MsG0180004393.01.T01:CDS 25.0%
! TGTTTATATGTAATCTTTCC+AGG - Chr1:77389598-77389617 MsG0180004393.01.T01:intron 25.0%
! TTATTCAATAAGGGTTTGAA+GGG - Chr1:77392859-77392878 MsG0180004393.01.T01:intron 25.0%
! TTCATTGCATAATAACAAGA+CGG + Chr1:77389434-77389453 None:intergenic 25.0%
! TTCTTCAACTGCATAAAATA+AGG + Chr1:77391299-77391318 None:intergenic 25.0%
! TTGAAGAAGAATCTCAAATA+TGG + Chr1:77392431-77392450 None:intergenic 25.0%
! TTTATTCAATAAGGGTTTGA+AGG - Chr1:77392858-77392877 MsG0180004393.01.T01:intron 25.0%
! TTTCTATTGTCAAAGAAGAA+GGG - Chr1:77390975-77390994 MsG0180004393.01.T01:intron 25.0%
! TTTGGAAAATTAAAATCCGA+TGG + Chr1:77390904-77390923 None:intergenic 25.0%
! TTTGTTTCAGATAAACAAGT+TGG - Chr1:77396134-77396153 MsG0180004393.01.T01:five_prime_UTR 25.0%
!! AAAGAGAAAGTGAGATATTT+TGG + Chr1:77394147-77394166 None:intergenic 25.0%
!! AAATTGCAAGAAACTTGTTT+AGG - Chr1:77394542-77394561 MsG0180004393.01.T01:intron 25.0%
!! AAGAGAAAGTGAGATATTTT+GGG + Chr1:77394146-77394165 None:intergenic 25.0%
!! ACACTAATCCTTAATGTTTT+TGG + Chr1:77390922-77390941 None:intergenic 25.0%
!! ACATTTAAAGCTGTTATTGA+TGG - Chr1:77391189-77391208 MsG0180004393.01.T01:intron 25.0%
!! ACCGGGTAAATAATTAATTT+TGG - Chr1:77391249-77391268 MsG0180004393.01.T01:intron 25.0%
!! ATCTGAAACAAATAAGGATT+GGG + Chr1:77396126-77396145 None:intergenic 25.0%
!! CTGTTTTATAGCAAACATTA+AGG + Chr1:77389060-77389079 None:intergenic 25.0%
!! TATCTGAAACAAATAAGGAT+TGG + Chr1:77396127-77396146 None:intergenic 25.0%
!! TGTTATTTGTGTTTCTTCTT+TGG - Chr1:77390144-77390163 MsG0180004393.01.T01:intron 25.0%
!! TTTGAAAAAACTTGTCCTTT+TGG - Chr1:77392250-77392269 MsG0180004393.01.T01:intron 25.0%
!!! AAAGATTTAGTTTGACAAGA+TGG - Chr1:77390412-77390431 MsG0180004393.01.T01:intron 25.0%
!!! AAGTCCTTTAATGAGTTTTT+TGG - Chr1:77390439-77390458 MsG0180004393.01.T01:intron 25.0%
!!! CATACTCTAAAATATGCTAA+TGG + Chr1:77393143-77393162 None:intergenic 25.0%
!!! CATTTTTTGTTCATCATTTG+CGG - Chr1:77391458-77391477 MsG0180004393.01.T01:intron 25.0%
!!! GCTATTAGTCATTTTCATTA+AGG + Chr1:77392393-77392412 None:intergenic 25.0%
!!! GTACAACCATTTTGATAATA+TGG + Chr1:77393288-77393307 None:intergenic 25.0%
!!! GTGTGACTAATATATTTTTG+GGG - Chr1:77392546-77392565 MsG0180004393.01.T01:intron 25.0%
!!! TCTAAGAAGTTTTTTCTTCA+TGG + Chr1:77390094-77390113 None:intergenic 25.0%
!!! TGTGACTAATATATTTTTGG+GGG - Chr1:77392547-77392566 MsG0180004393.01.T01:intron 25.0%
ACAATAGACAGAAAATTGAG+TGG + Chr1:77390066-77390085 None:intergenic 30.0%
ACATTTGAAGGAAAGGATTA+AGG - Chr1:77394452-77394471 MsG0180004393.01.T01:intron 30.0%
ACTAATACTCTGTTTATCCA+TGG - Chr1:77390476-77390495 MsG0180004393.01.T01:intron 30.0%
AGACGGTTATGAAAAATGAA+AGG + Chr1:77389417-77389436 None:intergenic 30.0%
AGATAGTTTAACCTTCCTTT+GGG - Chr1:77394573-77394592 MsG0180004393.01.T01:CDS 30.0%
AGATTATGCCAATTGTGATA+AGG + Chr1:77393640-77393659 None:intergenic 30.0%
AGGTAAGAAGAATCTTATGA+CGG - Chr1:77395948-77395967 MsG0180004393.01.T01:intron 30.0%
AGTTAAGGAGGATAAATGTT+GGG - Chr1:77392633-77392652 MsG0180004393.01.T01:intron 30.0%
ATCCAATTATAGAGGATGTT+GGG - Chr1:77393529-77393548 MsG0180004393.01.T01:intron 30.0%
ATTCATCTCTTCTACAAACT+CGG + Chr1:77394398-77394417 None:intergenic 30.0%
CAAATAAATCGCGTAGAAAT+AGG - Chr1:77393337-77393356 MsG0180004393.01.T01:intron 30.0%
CAAGACTTTAATAATGACGT+AGG - Chr1:77395402-77395421 MsG0180004393.01.T01:five_prime_UTR 30.0%
CAGATACAGAAATGCAATTA+TGG + Chr1:77391092-77391111 None:intergenic 30.0%
CGCAAATGATGAACAAAAAA+TGG + Chr1:77391460-77391479 None:intergenic 30.0%
CTAATCAACAAGAATTGCTT+TGG + Chr1:77394663-77394682 None:intergenic 30.0%
CTACGTCATTATTAAAGTCT+TGG + Chr1:77395404-77395423 None:intergenic 30.0%
CTTCCAAATTTCTAAATGGT+TGG - Chr1:77389725-77389744 MsG0180004393.01.T01:CDS 30.0%
GAACATCCAGAAACATATAT+AGG + Chr1:77394718-77394737 None:intergenic 30.0%
GAACCAACCATTTAGAAATT+TGG + Chr1:77389731-77389750 None:intergenic 30.0%
GAAGAAATATTGCTCAAGTA+TGG + Chr1:77394275-77394294 None:intergenic 30.0%
GATCTTTGAATCAAGAATCA+TGG - Chr1:77395023-77395042 MsG0180004393.01.T01:intron 30.0%
GATGAATCAAGCATGAATTA+TGG - Chr1:77394411-77394430 MsG0180004393.01.T01:CDS 30.0%
GCATATAGTTTACCTCTAAT+GGG - Chr1:77395314-77395333 MsG0180004393.01.T01:intron 30.0%
GTCATGATTATGTTATGCTT+AGG - Chr1:77395838-77395857 MsG0180004393.01.T01:five_prime_UTR 30.0%
GTGATTACGCAAAACTAAAA+AGG + Chr1:77390862-77390881 None:intergenic 30.0%
GTTGTAAAACTACGAAAGAA+AGG + Chr1:77394957-77394976 None:intergenic 30.0%
GTTTCTATTGTCAAAGAAGA+AGG - Chr1:77390974-77390993 MsG0180004393.01.T01:intron 30.0%
TAGATAGTTTAACCTTCCTT+TGG - Chr1:77394572-77394591 MsG0180004393.01.T01:CDS 30.0%
TCAAAAATTGGATATGGGAA+TGG + Chr1:77390685-77390704 None:intergenic 30.0%
TCAAAGTCTTGGAAGATTTA+AGG + Chr1:77394240-77394259 None:intergenic 30.0%
TCGTCAAATTTCCATCATAA+TGG + Chr1:77390563-77390582 None:intergenic 30.0%
TCTCAAATATGGAAGCTAAT+TGG + Chr1:77392420-77392439 None:intergenic 30.0%
TCTGATGTCTCTATGATAAA+AGG - Chr1:77392137-77392156 MsG0180004393.01.T01:intron 30.0%
TGCTTCAAAACACAAAATCA+AGG + Chr1:77389545-77389564 None:intergenic 30.0%
TTAAAGATAAGAGAGAGAGT+TGG + Chr1:77389152-77389171 None:intergenic 30.0%
TTCAGATGGATAGAAATGAA+TGG - Chr1:77391335-77391354 MsG0180004393.01.T01:intron 30.0%
TTCATGGAAAGTAAGTGTAA+TGG - Chr1:77394000-77394019 MsG0180004393.01.T01:intron 30.0%
TTCTTAGAGTAGTTAGTGTA+AGG - Chr1:77390106-77390125 MsG0180004393.01.T01:intron 30.0%
TTGATCAGTTTGAGAGAAAA+AGG - Chr1:77388972-77388991 MsG0180004393.01.T01:CDS 30.0%
! AAAGCTGTTATTGATGGTAA+AGG - Chr1:77391195-77391214 MsG0180004393.01.T01:intron 30.0%
! ATTTTGCTTTCAGTTTCATC+TGG - Chr1:77391696-77391715 MsG0180004393.01.T01:intron 30.0%
! CATATAAAGTTTGGTTCCAT+CGG - Chr1:77390885-77390904 MsG0180004393.01.T01:intron 30.0%
! GATTCTTCTTACCTTGTTAT+AGG + Chr1:77395942-77395961 None:intergenic 30.0%
! GGAAGAACACAAATTTTACT+CGG + Chr1:77389710-77389729 None:intergenic 30.0%
! GGTGTAACTTTTGTAACAAA+TGG + Chr1:77393201-77393220 None:intergenic 30.0%
! TATGATGGAAATTTGACGAA+TGG - Chr1:77390564-77390583 MsG0180004393.01.T01:intron 30.0%
! TTTTGCTTTCAGTTTCATCT+GGG - Chr1:77391697-77391716 MsG0180004393.01.T01:intron 30.0%
!! AACAAATAATAAAAGTGCCC+TGG + Chr1:77389619-77389638 None:intergenic 30.0%
!! ACTCTAAAATATGCTAATGG+AGG + Chr1:77393140-77393159 None:intergenic 30.0%
!! CTATTTCTACGCGATTTATT+TGG + Chr1:77393339-77393358 None:intergenic 30.0%
!! GTCTATGTGTTGTGTTTTTA+AGG - Chr1:77388996-77389015 MsG0180004393.01.T01:CDS 30.0%
!! GTGTTTTTAAGGAACAACAA+CGG - Chr1:77389007-77389026 MsG0180004393.01.T01:CDS 30.0%
!! TTTCAGATAAACAAGTTGGT+TGG - Chr1:77396138-77396157 MsG0180004393.01.T01:five_prime_UTR 30.0%
!!! ATTGCTTAGATGTTGTTTTG+GGG + Chr1:77394987-77395006 None:intergenic 30.0%
!!! ATTTTGTGTTTTGAAGCAGA+CGG - Chr1:77389547-77389566 MsG0180004393.01.T01:intron 30.0%
!!! CATTGCTTAGATGTTGTTTT+GGG + Chr1:77394988-77395007 None:intergenic 30.0%
!!! GTGACTAATATATTTTTGGG+GGG - Chr1:77392548-77392567 MsG0180004393.01.T01:intron 30.0%
!!! TGACTAATATATTTTTGGGG+GGG - Chr1:77392549-77392568 MsG0180004393.01.T01:intron 30.0%
!!! TTATATTTTCCTTTGGGATG+AGG - Chr1:77390793-77390812 MsG0180004393.01.T01:intron 30.0%
AAACTACGAAAGAAAGGCTT+CGG + Chr1:77394951-77394970 None:intergenic 35.0%
AAATTTCACAACCCAAAGGA+AGG + Chr1:77394587-77394606 None:intergenic 35.0%
AACTGATGGAAACCTATCTA+AGG + Chr1:77395537-77395556 None:intergenic 35.0%
AAGAAGTGAAGCCTATAACA+AGG - Chr1:77395928-77395947 MsG0180004393.01.T01:intron 35.0%
AATGAAAGGAAGAAGAGAAG+AGG + Chr1:77389403-77389422 None:intergenic 35.0%
AATGATGAGTCGTCATATAG+CGG - Chr1:77390601-77390620 MsG0180004393.01.T01:intron 35.0%
ACAATTGAGACAAGACACTT+TGG - Chr1:77392783-77392802 MsG0180004393.01.T01:intron 35.0%
ACAGAAAATTGAGTGGTGAA+GGG + Chr1:77390059-77390078 None:intergenic 35.0%
ACATTTACAGGCATTACACT+CGG + Chr1:77393925-77393944 None:intergenic 35.0%
ACTTCTTAAACGTGTCATAG+CGG + Chr1:77395915-77395934 None:intergenic 35.0%
AGCAAGCAAGAAACATTTGA+AGG - Chr1:77394440-77394459 MsG0180004393.01.T01:intron 35.0%
AGGATGAGTACTAGTAGTAT+TGG + Chr1:77392180-77392199 None:intergenic 35.0%
AGGTTTCCATCAGTTAGATA+GGG - Chr1:77395542-77395561 MsG0180004393.01.T01:five_prime_UTR 35.0%
AGTCGTATTAAACACGCTTA+AGG - Chr1:77394069-77394088 MsG0180004393.01.T01:intron 35.0%
ATACTCACAAAGCTACAAAG+AGG - Chr1:77389661-77389680 MsG0180004393.01.T01:intron 35.0%
ATCATACTCAGCAACTATGT+CGG + Chr1:77390774-77390793 None:intergenic 35.0%
ATGAAACAATCAGTCCTCTT+GGG + Chr1:77390187-77390206 None:intergenic 35.0%
ATTAAACACGCTTAAGGCAA+GGG - Chr1:77394075-77394094 MsG0180004393.01.T01:intron 35.0%
CAATCTTAGCATGTACATCA+AGG - Chr1:77395046-77395065 MsG0180004393.01.T01:intron 35.0%
CAGTTAAGGAGGATAAATGT+TGG - Chr1:77392632-77392651 MsG0180004393.01.T01:intron 35.0%
CATCCAATTATAGAGGATGT+TGG - Chr1:77393528-77393547 MsG0180004393.01.T01:intron 35.0%
CATGTGTACAATCATGCAAT+TGG + Chr1:77393227-77393246 None:intergenic 35.0%
CTAAAATATGCTAATGGAGG+AGG + Chr1:77393137-77393156 None:intergenic 35.0%
CTAATTGCTTACATTTGAGC+AGG - Chr1:77390338-77390357 MsG0180004393.01.T01:intron 35.0%
CTGGCCAAAAAACTCATTAA+AGG + Chr1:77390446-77390465 None:intergenic 35.0%
CTTCACATAGAAAGTTAAGC+AGG - Chr1:77395292-77395311 MsG0180004393.01.T01:intron 35.0%
GACGAATGGAAGAATTCAAA+TGG - Chr1:77390578-77390597 MsG0180004393.01.T01:intron 35.0%
GAGAGATTAACCGAATTACT+CGG - Chr1:77395077-77395096 MsG0180004393.01.T01:intron 35.0%
GCAAGAAACATTTGAAGGAA+AGG - Chr1:77394445-77394464 MsG0180004393.01.T01:intron 35.0%
GCATACTTATGATAGATGCA+GGG - Chr1:77389808-77389827 MsG0180004393.01.T01:intron 35.0%
GCTAAAATTTCACAACCCAA+AGG + Chr1:77394591-77394610 None:intergenic 35.0%
GGCATATAGTTTACCTCTAA+TGG - Chr1:77395313-77395332 MsG0180004393.01.T01:intron 35.0%
GGTATTGTACATACTTCTCA+GGG + Chr1:77390841-77390860 None:intergenic 35.0%
GGTGATCGAACAAAAAATGT+TGG - Chr1:77391853-77391872 MsG0180004393.01.T01:intron 35.0%
TAAAAGGACATTCATGTTGC+TGG - Chr1:77392153-77392172 MsG0180004393.01.T01:intron 35.0%
TAGGTTTCCATCAGTTAGAT+AGG - Chr1:77395541-77395560 MsG0180004393.01.T01:five_prime_UTR 35.0%
TATTAAACACGCTTAAGGCA+AGG - Chr1:77394074-77394093 MsG0180004393.01.T01:intron 35.0%
TATTATATGTCGTAGAGCCT+TGG - Chr1:77395678-77395697 MsG0180004393.01.T01:intron 35.0%
TCAAGCTTCAAAAATGGTGT+AGG - Chr1:77389777-77389796 MsG0180004393.01.T01:intron 35.0%
TCGAACAAAAAATGTTGGTG+TGG - Chr1:77391858-77391877 MsG0180004393.01.T01:intron 35.0%
TCGATAGTACTCACATCTAT+GGG - Chr1:77391138-77391157 MsG0180004393.01.T01:intron 35.0%
TGCATACTTATGATAGATGC+AGG - Chr1:77389807-77389826 MsG0180004393.01.T01:intron 35.0%
TGGAAGATTTAAGGAAGAGA+GGG + Chr1:77394231-77394250 None:intergenic 35.0%
TGGTTCTCATCCAATTATAG+AGG - Chr1:77393521-77393540 MsG0180004393.01.T01:intron 35.0%
TGTGAAAACTGAAATCACTC+AGG + Chr1:77390660-77390679 None:intergenic 35.0%
TTAATTATTTACCCGGTGCA+AGG + Chr1:77391246-77391265 None:intergenic 35.0%
TTCGAGATCATAGAGAAGTA+TGG - Chr1:77394292-77394311 MsG0180004393.01.T01:intron 35.0%
TTCGATAGTACTCACATCTA+TGG - Chr1:77391137-77391156 MsG0180004393.01.T01:intron 35.0%
TTGGAAGATTTAAGGAAGAG+AGG + Chr1:77394232-77394251 None:intergenic 35.0%
TTGGCAATGACAATTCAATG+TGG - Chr1:77391268-77391287 MsG0180004393.01.T01:intron 35.0%
TTTCAAAAAACGTTGGGTCA+AGG - Chr1:77392609-77392628 MsG0180004393.01.T01:intron 35.0%
TTTCAGATCATCTCAGGAAA+AGG - Chr1:77392056-77392075 MsG0180004393.01.T01:intron 35.0%
TTTCCATGAACTTAATCCTC+TGG + Chr1:77393990-77394009 None:intergenic 35.0%
TTTGCTTTCAGTTTCATCTG+GGG - Chr1:77391698-77391717 MsG0180004393.01.T01:intron 35.0%
! AGCTACAAAGAGGTATGATT+TGG - Chr1:77389671-77389690 MsG0180004393.01.T01:intron 35.0%
! AGCTTGTTTCAATGATTAGG+TGG - Chr1:77390726-77390745 MsG0180004393.01.T01:intron 35.0%
! AGGTATTGTACATACTTCTC+AGG + Chr1:77390842-77390861 None:intergenic 35.0%
! ATAACTGTTACTTGCATTGC+AGG - Chr1:77392033-77392052 MsG0180004393.01.T01:intron 35.0%
! ATAGAGAAGTATGGAAGCTT+GGG - Chr1:77394301-77394320 MsG0180004393.01.T01:intron 35.0%
! CACACATGTTGCTATTGAAA+TGG + Chr1:77392664-77392683 None:intergenic 35.0%
! CCATTGGTTATACCTTAGAT+AGG - Chr1:77395522-77395541 MsG0180004393.01.T01:five_prime_UTR 35.0%
! CCTATCTAAGGTATAACCAA+TGG + Chr1:77395525-77395544 None:intergenic 35.0%
! CTCGTGATCGTGTATTATTT+TGG - Chr1:77389861-77389880 MsG0180004393.01.T01:intron 35.0%
! CTTTCTCAGTCTAGGTTTTT+GGG - Chr1:77394168-77394187 MsG0180004393.01.T01:intron 35.0%
! GAAAAAACTTGTCCTTTTGG+TGG - Chr1:77392253-77392272 MsG0180004393.01.T01:intron 35.0%
! GATCGAATTTGACGAGTTTT+GGG - Chr1:77394752-77394771 MsG0180004393.01.T01:intron 35.0%
! GGTTGAAAAGTCTAGAATCA+AGG - Chr1:77394482-77394501 MsG0180004393.01.T01:intron 35.0%
! GTGAGCTTGTTTCAATGATT+AGG - Chr1:77390723-77390742 MsG0180004393.01.T01:intron 35.0%
! TACTTGCTAGAAACTGCAAT+TGG + Chr1:77390522-77390541 None:intergenic 35.0%
! TCATCTGGGGTTGTTAAAAT+CGG - Chr1:77391711-77391730 MsG0180004393.01.T01:intron 35.0%
!! GCATTGCTTAGATGTTGTTT+TGG + Chr1:77394989-77395008 None:intergenic 35.0%
!! TTTTTAAGGAACAACAACGG+AGG - Chr1:77389010-77389029 MsG0180004393.01.T01:CDS 35.0%
!!! GACTAATATATTTTTGGGGG+GGG - Chr1:77392550-77392569 MsG0180004393.01.T01:intron 35.0%
AAACGTGTCATAGCGGTTAA+GGG + Chr1:77395908-77395927 None:intergenic 40.0%
AAGATTTAAGGAAGAGAGGG+TGG + Chr1:77394228-77394247 None:intergenic 40.0%
AATATTCCGATACTGACAGG+CGG + Chr1:77393953-77393972 None:intergenic 40.0%
ACCTCTAATGGGATCGTTTA+AGG - Chr1:77395325-77395344 MsG0180004393.01.T01:intron 40.0%
ACTAAGCATAAGCCACCAAA+AGG + Chr1:77392268-77392287 None:intergenic 40.0%
ACTCGGAGGAATTGATAAGA+TGG + Chr1:77394381-77394400 None:intergenic 40.0%
ACTGCAATTGGTGTAGAAAG+AGG + Chr1:77390510-77390529 None:intergenic 40.0%
AGCCCAACATCCTCTATAAT+TGG + Chr1:77393534-77393553 None:intergenic 40.0%
AGTTAGATAGGGATTGTGCT+CGG - Chr1:77395553-77395572 MsG0180004393.01.T01:five_prime_UTR 40.0%
ATAAGATGGAGAGGAAGAGA+TGG + Chr1:77394367-77394386 None:intergenic 40.0%
ATATCAAGTCATCACCTGCT+AGG - Chr1:77389369-77389388 MsG0180004393.01.T01:intron 40.0%
ATGAACTTAATCCTCTGGCA+CGG + Chr1:77393985-77394004 None:intergenic 40.0%
ATTGTACATACTTCTCAGGG+TGG + Chr1:77390838-77390857 None:intergenic 40.0%
CAAGGATGAAGCAAAAGCTA+GGG - Chr1:77394500-77394519 MsG0180004393.01.T01:intron 40.0%
CACAATCCCTATCTAACTGA+TGG + Chr1:77395551-77395570 None:intergenic 40.0%
CATAATCTCTTTCTCTCCGA+TGG - Chr1:77393459-77393478 MsG0180004393.01.T01:intron 40.0%
CATTTACAGGCATTACACTC+GGG + Chr1:77393924-77393943 None:intergenic 40.0%
CCAAAAACCTAGACTGAGAA+AGG + Chr1:77394170-77394189 None:intergenic 40.0%
CCAGCACTTGATCTAAAAGT+CGG - Chr1:77391013-77391032 MsG0180004393.01.T01:intron 40.0%
CCATTCTTCGACATCCATAA+AGG + Chr1:77390003-77390022 None:intergenic 40.0%
CCTTTATGGATGTCGAAGAA+TGG - Chr1:77390000-77390019 MsG0180004393.01.T01:intron 40.0%
CTGCAATTGGTGTAGAAAGA+GGG + Chr1:77390509-77390528 None:intergenic 40.0%
GACAGAAAATTGAGTGGTGA+AGG + Chr1:77390060-77390079 None:intergenic 40.0%
GAGGAATTGATAAGATGGAG+AGG + Chr1:77394376-77394395 None:intergenic 40.0%
GATGAAACAATCAGTCCTCT+TGG + Chr1:77390188-77390207 None:intergenic 40.0%
GATGACTTGATATCTGGCAT+TGG + Chr1:77389362-77389381 None:intergenic 40.0%
GCTTACATTTGAGCAGGTTA+AGG - Chr1:77390344-77390363 MsG0180004393.01.T01:intron 40.0%
GGAAAGGATTAAGGCAAGTT+TGG - Chr1:77394461-77394480 MsG0180004393.01.T01:intron 40.0%
GGTAATATTCCGATACTGAC+AGG + Chr1:77393956-77393975 None:intergenic 40.0%
GTACAATCATGCAATTGGTG+CGG + Chr1:77393222-77393241 None:intergenic 40.0%
GTTACCTATAGCCTAGGATT+AGG - Chr1:77396072-77396091 MsG0180004393.01.T01:five_prime_UTR 40.0%
GTTCTTGACAAGCTATGTCA+AGG + Chr1:77395137-77395156 None:intergenic 40.0%
TAAACGTGTCATAGCGGTTA+AGG + Chr1:77395909-77395928 None:intergenic 40.0%
TAAGGAGGATAAATGTTGGG+TGG - Chr1:77392636-77392655 MsG0180004393.01.T01:intron 40.0%
TATCAAGTCATCACCTGCTA+GGG - Chr1:77389370-77389389 MsG0180004393.01.T01:intron 40.0%
TCAAGGATGAAGCAAAAGCT+AGG - Chr1:77394499-77394518 MsG0180004393.01.T01:intron 40.0%
TCATACTCAGCAACTATGTC+GGG + Chr1:77390773-77390792 None:intergenic 40.0%
TCCTTAAACGATCCCATTAG+AGG + Chr1:77395329-77395348 None:intergenic 40.0%
TCGCTAATAGCGAGTTTCTT+CGG + Chr1:77394806-77394825 None:intergenic 40.0%
TCTCTTTCCTTTCTCAGTCT+AGG - Chr1:77394160-77394179 MsG0180004393.01.T01:intron 40.0%
TGAAACAATCAGTCCTCTTG+GGG + Chr1:77390186-77390205 None:intergenic 40.0%
TGCTCAAGTATGGATAGTGT+TGG + Chr1:77394265-77394284 None:intergenic 40.0%
TTCATCGCTACCGAGTAATT+CGG + Chr1:77395090-77395109 None:intergenic 40.0%
TTGTGTCTGGTACATGATTC+AGG - Chr1:77391385-77391404 MsG0180004393.01.T01:intron 40.0%
TTGTTTAGTAGAAGCAGTGC+AGG - Chr1:77389915-77389934 MsG0180004393.01.T01:intron 40.0%
! ACACTTTGGAGAGTCTCAAA+GGG - Chr1:77392797-77392816 MsG0180004393.01.T01:intron 40.0%
! ACTCTAGCTTCTATACGAAG+GGG + Chr1:77395233-77395252 None:intergenic 40.0%
! ACTTGCTAACTCTTCTACCT+CGG + Chr1:77395353-77395372 None:intergenic 40.0%
! ATACTTTTCGTTGTGCTCAC+AGG - Chr1:77391164-77391183 MsG0180004393.01.T01:intron 40.0%
! ATGAGTTTCTAGAGAGGTGA+AGG + Chr1:77394343-77394362 None:intergenic 40.0%
! ATTGATGGTAAAGGCTGTGA+TGG - Chr1:77391204-77391223 MsG0180004393.01.T01:intron 40.0%
! CACTCTAGCTTCTATACGAA+GGG + Chr1:77395234-77395253 None:intergenic 40.0%
! CATAGAGAAGTATGGAAGCT+TGG - Chr1:77394300-77394319 MsG0180004393.01.T01:intron 40.0%
! CCTTTCTCAGTCTAGGTTTT+TGG - Chr1:77394167-77394186 MsG0180004393.01.T01:intron 40.0%
! GATGGAATGAGTTTCTAGAG+AGG + Chr1:77394349-77394368 None:intergenic 40.0%
! GGATCGAATTTGACGAGTTT+TGG - Chr1:77394751-77394770 MsG0180004393.01.T01:intron 40.0%
! GTGACGCTTTTCCATTATGA+TGG - Chr1:77390549-77390568 MsG0180004393.01.T01:intron 40.0%
! GTTCATTTTACGAAAAGCCC+CGG + Chr1:77395590-77395609 None:intergenic 40.0%
! TTCATTTTACGAAAAGCCCC+GGG + Chr1:77395589-77395608 None:intergenic 40.0%
!! TAGTGTTGGCATCAAAGTCT+TGG + Chr1:77394251-77394270 None:intergenic 40.0%
!! TTCCTGCAACTTCTAGAGTT+TGG - Chr1:77392312-77392331 MsG0180004393.01.T01:intron 40.0%
AACGTGTCATAGCGGTTAAG+GGG + Chr1:77395907-77395926 None:intergenic 45.0%
AAGTACTCGAGACTATACCC+TGG + Chr1:77389963-77389982 None:intergenic 45.0%
AATCTCTTTCTCTCCGATGG+AGG - Chr1:77393462-77393481 MsG0180004393.01.T01:intron 45.0%
ACCTATAGCCTAGGATTAGG+TGG - Chr1:77396075-77396094 MsG0180004393.01.T01:five_prime_UTR 45.0%
AGAAAGAGGGTCATGATCCA+TGG + Chr1:77390496-77390515 None:intergenic 45.0%
AGAATACGCTCTACGTATCG+AGG + Chr1:77395864-77395883 None:intergenic 45.0%
AGAGCGTATTCTTGGCAATG+CGG - Chr1:77395872-77395891 MsG0180004393.01.T01:intron 45.0%
AGGTAAGGAGGCTTTCTTAC+AGG - Chr1:77392576-77392595 MsG0180004393.01.T01:intron 45.0%
AGTACTCGAGACTATACCCT+GGG + Chr1:77389962-77389981 None:intergenic 45.0%
AGTGAGTTCCACCTAATCCT+AGG + Chr1:77396086-77396105 None:intergenic 45.0%
ATATTCCGATACTGACAGGC+GGG + Chr1:77393952-77393971 None:intergenic 45.0%
ATCAAATTACCGCACGTGGT+AGG - Chr1:77391045-77391064 MsG0180004393.01.T01:intron 45.0%
ATCATGACACGACTCTAGAC+CGG + Chr1:77395826-77395845 None:intergenic 45.0%
ATGTCCATAACATCCTGCAG+CGG + Chr1:77396209-77396228 None:intergenic 45.0%
ATTATTTACCCGGTGCAAGG+AGG + Chr1:77391243-77391262 None:intergenic 45.0%
CAACCTAGTGTGAACCACAA+GGG + Chr1:77395436-77395455 None:intergenic 45.0%
CAGGATGTTATGGACATGCA+AGG - Chr1:77396212-77396231 MsG0180004393.01.T01:five_prime_UTR 45.0%
CAGGCGGGATTTACATTTAC+AGG + Chr1:77393937-77393956 None:intergenic 45.0%
CAGGTTGTATTGTAGACACG+TGG - Chr1:77396028-77396047 MsG0180004393.01.T01:five_prime_UTR 45.0%
CATATAGCGGTAGTCGATCA+AGG - Chr1:77390614-77390633 MsG0180004393.01.T01:intron 45.0%
CATCATCAAATTACCGCACG+TGG - Chr1:77391041-77391060 MsG0180004393.01.T01:intron 45.0%
CATCTCTTCTACAAACTCGG+AGG + Chr1:77394395-77394414 None:intergenic 45.0%
CCCACACACGTATAATCAAC+CGG - Chr1:77396005-77396024 MsG0180004393.01.T01:intron 45.0%
CCGGTTGATTATACGTGTGT+GGG + Chr1:77396008-77396027 None:intergenic 45.0%
CGATACGTAGAGCGTATTCT+TGG - Chr1:77395864-77395883 MsG0180004393.01.T01:intron 45.0%
CGCTAATAGCGAGTTTCTTC+GGG + Chr1:77394805-77394824 None:intergenic 45.0%
CGCTTAAGGCAAGGGTAATT+TGG - Chr1:77394083-77394102 MsG0180004393.01.T01:intron 45.0%
CGGTTGATTATACGTGTGTG+GGG + Chr1:77396007-77396026 None:intergenic 45.0%
CTTCTTTGGTCGTAATCCTC+CGG - Chr1:77390158-77390177 MsG0180004393.01.T01:intron 45.0%
GATATGCCGAAGACGATCTT+AGG - Chr1:77395786-77395805 MsG0180004393.01.T01:intron 45.0%
GCAGGTGATGACTTGATATC+TGG + Chr1:77389368-77389387 None:intergenic 45.0%
GGATGTTCATAGTGCATTGC+AGG - Chr1:77394730-77394749 MsG0180004393.01.T01:intron 45.0%
GGGAAACCTAAGATCGTCTT+CGG + Chr1:77395795-77395814 None:intergenic 45.0%
GGGTTTCCACTAGAGGAAAT+GGG - Chr1:77395462-77395481 MsG0180004393.01.T01:intron 45.0%
GGTTTCCACTAGAGGAAATG+GGG - Chr1:77395463-77395482 MsG0180004393.01.T01:intron 45.0%
GTGCCAGAGGATTAAGTTCA+TGG - Chr1:77393984-77394003 MsG0180004393.01.T01:CDS 45.0%
GTGTCTACAATACAACCTGC+CGG + Chr1:77396027-77396046 None:intergenic 45.0%
GTTAGATAGGGATTGTGCTC+GGG - Chr1:77395554-77395573 MsG0180004393.01.T01:five_prime_UTR 45.0%
GTTCTTGACGATCTATGCCA+AGG + Chr1:77395698-77395717 None:intergenic 45.0%
TAAATCCCGCCTGTCAGTAT+CGG - Chr1:77393944-77393963 MsG0180004393.01.T01:intron 45.0%
TCACGTCTTGCCATACTGTA+TGG + Chr1:77395257-77395276 None:intergenic 45.0%
TCCACCTAATCCTAGGCTAT+AGG + Chr1:77396079-77396098 None:intergenic 45.0%
TCCTAGGCTATAGGTAACCT+CGG + Chr1:77396070-77396089 None:intergenic 45.0%
TCGGTAGCGATGAACTAAGA+GGG - Chr1:77395096-77395115 MsG0180004393.01.T01:intron 45.0%
TGCAGGTTTCAGATCATCTC+AGG - Chr1:77392050-77392069 MsG0180004393.01.T01:intron 45.0%
TGGGGACTTGCATACTTAGA+CGG + Chr1:77395989-77396008 None:intergenic 45.0%
TTAGACGGTCGTGCATACTA+GGG + Chr1:77395974-77395993 None:intergenic 45.0%
TTAGGTTTCCCCTAATCGTC+CGG - Chr1:77395804-77395823 MsG0180004393.01.T01:intron 45.0%
! AGAGAGAGTTGGTTGACGAA+AGG + Chr1:77389141-77389160 None:intergenic 45.0%
! AGCTAGAGTGCCATACAGTA+TGG - Chr1:77395244-77395263 MsG0180004393.01.T01:five_prime_UTR 45.0%
! AGTCTCGAGTACTTCGAGTT+TGG - Chr1:77389969-77389988 MsG0180004393.01.T01:intron 45.0%
! CACCAAACTCTAGAAGTTGC+AGG + Chr1:77392317-77392336 None:intergenic 45.0%
! CACTTGCTGAGACATCCATT+CGG + Chr1:77396175-77396194 None:intergenic 45.0%
! CCGACTTTTAGATCAAGTGC+TGG + Chr1:77391016-77391035 None:intergenic 45.0%
! GACACTTTGGAGAGTCTCAA+AGG - Chr1:77392796-77392815 MsG0180004393.01.T01:intron 45.0%
! GCACTCTAGCTTCTATACGA+AGG + Chr1:77395235-77395254 None:intergenic 45.0%
! GGTGGAAGTTTTCTACTCCT+AGG + Chr1:77390820-77390839 None:intergenic 45.0%
! GTTTGGAGCTGAGACCTTTA+TGG - Chr1:77389986-77390005 MsG0180004393.01.T01:intron 45.0%
!! TCTCAAAGGGCATCATGGTA+TGG - Chr1:77392810-77392829 MsG0180004393.01.T01:intron 45.0%
!! TTGGCTTGTTGGCTCTTTGT+GGG - Chr1:77394911-77394930 MsG0180004393.01.T01:intron 45.0%
!! TTTGGCTTGTTGGCTCTTTG+TGG - Chr1:77394910-77394929 MsG0180004393.01.T01:intron 45.0%
!! AATTTAATAATAAAAAAGAA+TGG + Chr1:77393773-77393792 None:intergenic 5.0%
AAATTACCGCACGTGGTAGG+AGG - Chr1:77391048-77391067 MsG0180004393.01.T01:intron 50.0%
AACTGCCATCGCAAACAAGC+TGG + Chr1:77390382-77390401 None:intergenic 50.0%
AAGAGGTTACGTACCCTAGC+AGG + Chr1:77389386-77389405 None:intergenic 50.0%
AATCAGTCCTCTTGGGGAAC+CGG + Chr1:77390180-77390199 None:intergenic 50.0%
ACGCAGCTCTTGGAAAACAG+GGG + Chr1:77391361-77391380 None:intergenic 50.0%
ACGTTGGGTCAAGGCAGTTA+AGG - Chr1:77392618-77392637 MsG0180004393.01.T01:intron 50.0%
ACTCTAGACCGGACGATTAG+GGG + Chr1:77395815-77395834 None:intergenic 50.0%
ACTGCCATCGCAAACAAGCT+GGG + Chr1:77390381-77390400 None:intergenic 50.0%
AGAACGACTTGATCCATGCG+TGG - Chr1:77391491-77391510 MsG0180004393.01.T01:intron 50.0%
AGTTGGTTGACGAAAGGAGC+GGG + Chr1:77389135-77389154 None:intergenic 50.0%
ATCGCAAACAAGCTGGGTGA+TGG + Chr1:77390375-77390394 None:intergenic 50.0%
ATGGAGTAGAGAGAAGGAGG+AGG + Chr1:77394203-77394222 None:intergenic 50.0%
CACACGTATAATCAACCGGC+AGG - Chr1:77396009-77396028 MsG0180004393.01.T01:five_prime_UTR 50.0%
CACGCAGCTCTTGGAAAACA+GGG + Chr1:77391362-77391381 None:intergenic 50.0%
CCAACCTAGTGTGAACCACA+AGG + Chr1:77395437-77395456 None:intergenic 50.0%
CCTAGGCTATAGGTAACCTC+GGG + Chr1:77396069-77396088 None:intergenic 50.0%
CCTTGTGGTTCACACTAGGT+TGG - Chr1:77395434-77395453 MsG0180004393.01.T01:intron 50.0%
CGGTAGCGATGAACTAAGAG+GGG - Chr1:77395097-77395116 MsG0180004393.01.T01:intron 50.0%
CGGTAGTCGATCAAGGCAAA+TGG - Chr1:77390621-77390640 MsG0180004393.01.T01:intron 50.0%
CTAGGCTATAGGTAACCTCG+GGG + Chr1:77396068-77396087 None:intergenic 50.0%
CTCGGTAGCGATGAACTAAG+AGG - Chr1:77395095-77395114 MsG0180004393.01.T01:intron 50.0%
CTTAGACGGTCGTGCATACT+AGG + Chr1:77395975-77395994 None:intergenic 50.0%
GAACGACTTGATCCATGCGT+GGG - Chr1:77391492-77391511 MsG0180004393.01.T01:intron 50.0%
GACTCTAGACCGGACGATTA+GGG + Chr1:77395816-77395835 None:intergenic 50.0%
GCCGGTTGATTATACGTGTG+TGG + Chr1:77396009-77396028 None:intergenic 50.0%
GCTAACCCCATTTCCTCTAG+TGG + Chr1:77395471-77395490 None:intergenic 50.0%
GGGGTTTCCACTAGAGGAAA+TGG - Chr1:77395461-77395480 MsG0180004393.01.T01:intron 50.0%
GGTAACGCTTCACTTCCACT+AGG + Chr1:77389941-77389960 None:intergenic 50.0%
GTTATCTGTGCCTCCAGAGT+GGG + Chr1:77391916-77391935 None:intergenic 50.0%
TAGGCTATAGGTAACCTCGG+GGG + Chr1:77396067-77396086 None:intergenic 50.0%
TCACTACAATCGTCCCACTC+TGG - Chr1:77391900-77391919 MsG0180004393.01.T01:intron 50.0%
TGGGATCGTTTAAGGATCCG+AGG - Chr1:77395333-77395352 MsG0180004393.01.T01:intron 50.0%
TGTCCATAACATCCTGCAGC+GGG + Chr1:77396208-77396227 None:intergenic 50.0%
TGTCCCTTGTGGTTCACACT+AGG - Chr1:77395430-77395449 MsG0180004393.01.T01:intron 50.0%
TGTTATCTGTGCCTCCAGAG+TGG + Chr1:77391917-77391936 None:intergenic 50.0%
TTGGGTCAAGGCAGTTAAGG+AGG - Chr1:77392621-77392640 MsG0180004393.01.T01:intron 50.0%
! ATCACCCAGCTTGTTTGCGA+TGG - Chr1:77390374-77390393 MsG0180004393.01.T01:intron 50.0%
! ATTTTACGAAAAGCCCCGGG+CGG + Chr1:77395586-77395605 None:intergenic 50.0%
! GAGTTGGTTGACGAAAGGAG+CGG + Chr1:77389136-77389155 None:intergenic 50.0%
! GTCGCTGATAGCGAATCATC+TGG - Chr1:77394873-77394892 MsG0180004393.01.T01:intron 50.0%
! GTTCACACTAGGTTGGCTCA+GGG - Chr1:77395441-77395460 MsG0180004393.01.T01:intron 50.0%
! TGGAAGTGAAGCGTTACCCA+GGG - Chr1:77389943-77389962 MsG0180004393.01.T01:intron 50.0%
! TTCACACTAGGTTGGCTCAG+GGG - Chr1:77395442-77395461 MsG0180004393.01.T01:intron 50.0%
!! AGGAAATGGGGTTAGCCGTA+AGG - Chr1:77395475-77395494 MsG0180004393.01.T01:intron 50.0%
!! GAGAGTCTCAAAGGGCATCA+TGG - Chr1:77392805-77392824 MsG0180004393.01.T01:intron 50.0%
!! TGGCTTGTTGGCTCTTTGTG+GGG - Chr1:77394912-77394931 MsG0180004393.01.T01:intron 50.0%
!! TTCCTTTGGGATGAGGACCT+AGG - Chr1:77390800-77390819 MsG0180004393.01.T01:intron 50.0%
!! TTGTTGGCTCTTTGTGGGGT+CGG - Chr1:77394916-77394935 MsG0180004393.01.T01:intron 50.0%
!!! TATATTTTTGGGGGGGGTGC+AGG - Chr1:77392556-77392575 MsG0180004393.01.T01:intron 50.0%
AACCAATGGCACTCCCTCAG+TGG + Chr1:77395511-77395530 None:intergenic 55.0%
AATGGAGGAGGCTCAAAGCG+AGG + Chr1:77393125-77393144 None:intergenic 55.0%
ACAAGCCAAAGCATGCTGGC+TGG + Chr1:77394900-77394919 None:intergenic 55.0%
ACCCTGGAGCGACTTTCTTC+AGG + Chr1:77394855-77394874 None:intergenic 55.0%
AGCGAGTTTCTTCGGGTCTG+TGG + Chr1:77394798-77394817 None:intergenic 55.0%
CCACGCAGCTCTTGGAAAAC+AGG + Chr1:77391363-77391382 None:intergenic 55.0%
CCCGAGGTTACCTATAGCCT+AGG - Chr1:77396066-77396085 MsG0180004393.01.T01:five_prime_UTR 55.0%
CGACTCTAGACCGGACGATT+AGG + Chr1:77395817-77395836 None:intergenic 55.0%
CGATGGAGGAGGAGGTGATA+CGG - Chr1:77393476-77393495 MsG0180004393.01.T01:intron 55.0%
CGTATCACCTCCTCCTCCAT+CGG + Chr1:77393478-77393497 None:intergenic 55.0%
CTACAATCGTCCCACTCTGG+AGG - Chr1:77391903-77391922 MsG0180004393.01.T01:intron 55.0%
CTCCTAGGTCCTCATCCCAA+AGG + Chr1:77390805-77390824 None:intergenic 55.0%
CTCTTTCTCTCCGATGGAGG+AGG - Chr1:77393465-77393484 MsG0180004393.01.T01:intron 55.0%
CTGCAATCTAGTCCCACGCA+TGG + Chr1:77391507-77391526 None:intergenic 55.0%
CTTTGACCTCCTACCACGTG+CGG + Chr1:77391057-77391076 None:intergenic 55.0%
GCCAACAAGCCAAAGCATGC+TGG + Chr1:77394904-77394923 None:intergenic 55.0%
GCCTGAAGAAAGTCGCTCCA+GGG - Chr1:77394851-77394870 MsG0180004393.01.T01:intron 55.0%
GCGATGGAGTAGAGAGAAGG+AGG + Chr1:77394206-77394225 None:intergenic 55.0%
GGAGCGGGAAGCGAAAATCA+CGG + Chr1:77389120-77389139 None:intergenic 55.0%
GGTAGGAGGTCAAAGTGCAC+AGG - Chr1:77391062-77391081 MsG0180004393.01.T01:intron 55.0%
GTAACCTCGGGGGAAACCTA+CGG + Chr1:77396057-77396076 None:intergenic 55.0%
GTACCCGCTGCAGGATGTTA+TGG - Chr1:77396202-77396221 MsG0180004393.01.T01:five_prime_UTR 55.0%
GTGGCGATGGAGTAGAGAGA+AGG + Chr1:77394209-77394228 None:intergenic 55.0%
TAAGGAAGAGAGGGTGGCGA+TGG + Chr1:77394222-77394241 None:intergenic 55.0%
TAATCCTCCGGTTCCCCAAG+AGG - Chr1:77390170-77390189 MsG0180004393.01.T01:intron 55.0%
TAGAAGCAGTGCAGGCCTAG+TGG - Chr1:77389923-77389942 MsG0180004393.01.T01:intron 55.0%
TGATTCGCTATCAGCGACCC+TGG + Chr1:77394871-77394890 None:intergenic 55.0%
TGCCTGAAGAAAGTCGCTCC+AGG - Chr1:77394850-77394869 MsG0180004393.01.T01:intron 55.0%
TGCGTGGGACTAGATTGCAG+CGG - Chr1:77391507-77391526 MsG0180004393.01.T01:intron 55.0%
TGTAGACACGTGGTGACCGT+AGG - Chr1:77396038-77396057 MsG0180004393.01.T01:five_prime_UTR 55.0%
TTGGCGAGCTAGTAGCCGAA+TGG - Chr1:77396157-77396176 MsG0180004393.01.T01:five_prime_UTR 55.0%
TTTCTCTCCGATGGAGGAGG+AGG - Chr1:77393468-77393487 MsG0180004393.01.T01:intron 55.0%
! CCTGTTTTCCAAGAGCTGCG+TGG - Chr1:77391360-77391379 MsG0180004393.01.T01:intron 55.0%
! CGTAGGTGTCATGTCCCTTG+TGG - Chr1:77395419-77395438 MsG0180004393.01.T01:intron 55.0%
! GGTTCACACTAGGTTGGCTC+AGG - Chr1:77395440-77395459 MsG0180004393.01.T01:intron 55.0%
! GTGGAAGTGAAGCGTTACCC+AGG - Chr1:77389942-77389961 MsG0180004393.01.T01:intron 55.0%
!! GCCAGCATGCTTTGGCTTGT+TGG - Chr1:77394900-77394919 MsG0180004393.01.T01:intron 55.0%
AATCCTCTGGCACGGTCGAC+TGG + Chr1:77393977-77393996 None:intergenic 60.0%
ACACAACGCCACGCAGCTCT+TGG + Chr1:77391371-77391390 None:intergenic 60.0%
AGCACAGCTCCTCCTTGCAC+CGG - Chr1:77391231-77391250 MsG0180004393.01.T01:intron 60.0%
AGGAGGTGATACGGCTGGGA+AGG - Chr1:77393485-77393504 MsG0180004393.01.T01:intron 60.0%
AGTGGCGTGCGGGATCCTTA+CGG + Chr1:77395493-77395512 None:intergenic 60.0%
CTGGACCAGCCAGCATGCTT+TGG - Chr1:77394892-77394911 MsG0180004393.01.T01:intron 60.0%
GAGGAGGAGGTGATACGGCT+GGG - Chr1:77393481-77393500 MsG0180004393.01.T01:intron 60.0%
GCGTGGGACTAGATTGCAGC+GGG - Chr1:77391508-77391527 MsG0180004393.01.T01:intron 60.0%
GGCTCAGGGGTTTCCACTAG+AGG - Chr1:77395455-77395474 MsG0180004393.01.T01:intron 60.0%
GGGAAGGTCGTAGTGGCACA+TGG - Chr1:77393501-77393520 MsG0180004393.01.T01:intron 60.0%
TACGGCTGGGAAGGTCGTAG+TGG - Chr1:77393494-77393513 MsG0180004393.01.T01:intron 60.0%
TGTTCGTTCGTACCCGCTGC+AGG - Chr1:77396193-77396212 MsG0180004393.01.T01:five_prime_UTR 60.0%
TTACCAGTCGACCGTGCCAG+AGG - Chr1:77393971-77393990 MsG0180004393.01.T01:CDS 60.0%
! TTGGCTCTTTGTGGGGTCGG+TGG - Chr1:77394919-77394938 MsG0180004393.01.T01:intron 60.0%
!! TGCAGCGGGCTACTGTTCAC+AGG - Chr1:77391522-77391541 MsG0180004393.01.T01:intron 60.0%
!! TTTTGGGGGGGGTGCAGGTA+AGG - Chr1:77392561-77392580 MsG0180004393.01.T01:intron 60.0%
AAGGATCCCGCACGCCACTG+AGG - Chr1:77395494-77395513 MsG0180004393.01.T01:intron 65.0%
AGGATCCCGCACGCCACTGA+GGG - Chr1:77395495-77395514 MsG0180004393.01.T01:intron 65.0%
CAGTCCTCTTGGGGAACCGG+AGG + Chr1:77390177-77390196 None:intergenic 65.0%
GAGCTGCGTGGCGTTGTGTC+TGG - Chr1:77391372-77391391 MsG0180004393.01.T01:intron 65.0%
GCACAGCTCCTCCTTGCACC+GGG - Chr1:77391232-77391251 MsG0180004393.01.T01:intron 65.0%
GGAGGAGGAGGTGATACGGC+TGG - Chr1:77393480-77393499 MsG0180004393.01.T01:intron 65.0%
GTGACCGTAGGTTTCCCCCG+AGG - Chr1:77396050-77396069 MsG0180004393.01.T01:five_prime_UTR 65.0%
GTGCTCGGGTTTACTCCGCC+CGG - Chr1:77395568-77395587 MsG0180004393.01.T01:five_prime_UTR 65.0%
TGCTCGGGTTTACTCCGCCC+GGG - Chr1:77395569-77395588 MsG0180004393.01.T01:five_prime_UTR 65.0%
!! CGCCACTGAGGGAGTGCCAT+TGG - Chr1:77395506-77395525 MsG0180004393.01.T01:intron 65.0%
GCACTCCCTCAGTGGCGTGC+GGG + Chr1:77395503-77395522 None:intergenic 70.0%
GCTCGGGTTTACTCCGCCCG+GGG - Chr1:77395570-77395589 MsG0180004393.01.T01:five_prime_UTR 70.0%
GGCACTCCCTCAGTGGCGTG+CGG + Chr1:77395504-77395523 None:intergenic 70.0%
! TGGGGGGGGTGCAGGTAAGG+AGG - Chr1:77392564-77392583 MsG0180004393.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77388949 77396254 77388949 ID=MsG0180004393.01;Name=MsG0180004393.01
Chr1 mRNA 77388949 77396254 77388949 ID=MsG0180004393.01.T01;Parent=MsG0180004393.01;Name=MsG0180004393.01.T01;_AED=0.28;_eAED=0.43;_QI=769|0.52|0.61|0.94|0.64|0.61|18|0|298
Chr1 exon 77388949 77389059 77388949 ID=MsG0180004393.01.T01:exon:14941;Parent=MsG0180004393.01.T01
Chr1 exon 77389254 77389343 77389254 ID=MsG0180004393.01.T01:exon:14940;Parent=MsG0180004393.01.T01
Chr1 exon 77389484 77389510 77389484 ID=MsG0180004393.01.T01:exon:14939;Parent=MsG0180004393.01.T01
Chr1 exon 77389676 77389779 77389676 ID=MsG0180004393.01.T01:exon:14938;Parent=MsG0180004393.01.T01
Chr1 exon 77392377 77392476 77392377 ID=MsG0180004393.01.T01:exon:14937;Parent=MsG0180004393.01.T01
Chr1 exon 77393111 77393148 77393111 ID=MsG0180004393.01.T01:exon:14936;Parent=MsG0180004393.01.T01
Chr1 exon 77393263 77393350 77393263 ID=MsG0180004393.01.T01:exon:14935;Parent=MsG0180004393.01.T01
Chr1 exon 77393797 77393863 77393797 ID=MsG0180004393.01.T01:exon:14934;Parent=MsG0180004393.01.T01
Chr1 exon 77393950 77394017 77393950 ID=MsG0180004393.01.T01:exon:14933;Parent=MsG0180004393.01.T01
Chr1 exon 77394173 77394233 77394173 ID=MsG0180004393.01.T01:exon:14932;Parent=MsG0180004393.01.T01
Chr1 exon 77394357 77394458 77394357 ID=MsG0180004393.01.T01:exon:14931;Parent=MsG0180004393.01.T01
Chr1 exon 77394561 77394676 77394561 ID=MsG0180004393.01.T01:exon:14930;Parent=MsG0180004393.01.T01
Chr1 exon 77394763 77394843 77394763 ID=MsG0180004393.01.T01:exon:14929;Parent=MsG0180004393.01.T01
Chr1 exon 77395162 77395280 77395162 ID=MsG0180004393.01.T01:exon:14928;Parent=MsG0180004393.01.T01
Chr1 exon 77395374 77395432 77395374 ID=MsG0180004393.01.T01:exon:14927;Parent=MsG0180004393.01.T01
Chr1 exon 77395521 77395637 77395521 ID=MsG0180004393.01.T01:exon:14926;Parent=MsG0180004393.01.T01
Chr1 exon 77395812 77395882 77395812 ID=MsG0180004393.01.T01:exon:14925;Parent=MsG0180004393.01.T01
Chr1 exon 77396008 77396254 77396008 ID=MsG0180004393.01.T01:exon:14924;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77396008 77396254 77396008 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77395812 77395882 77395812 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77395521 77395637 77395521 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77395374 77395432 77395374 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77395162 77395280 77395162 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77394763 77394843 77394763 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 five_prime_UTR 77394602 77394676 77394602 ID=MsG0180004393.01.T01:five_prime_utr;Parent=MsG0180004393.01.T01
Chr1 CDS 77394561 77394601 77394561 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77394357 77394458 77394357 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77394173 77394233 77394173 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77393950 77394017 77393950 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77393797 77393863 77393797 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77393263 77393350 77393263 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77393111 77393148 77393111 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77392377 77392476 77392377 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77389676 77389779 77389676 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77389484 77389510 77389484 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77389254 77389343 77389254 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Chr1 CDS 77388949 77389059 77388949 ID=MsG0180004393.01.T01:cds;Parent=MsG0180004393.01.T01
Gene Sequence

>MsG0180004393.01.T01

ATGATGAGTCGTCATATAGCGGTAGTCGATCAAGGCAAATGGTGGTTTGCGAAGCGTTTCTTACATCCCGACATAGTTGCTGAGTATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTAGAAAACTTCCACCCTGAGAAGTATGTTTCTATTGTCAAAGAAGAAGGGCTTGAGATATCACAACCAGCACTTGATCTAAAAGAGACATTTAAAGCTGTTATTGATGGTAAAGGCTGTGATGGAAGTAGCACAGCTCCTCCTTGCACCGGATGGATAGAAATGAATGGCCCCTGTTTTCCAAGAGCTGCGTGGCGTTGTGTCTGGTACATGATTCAGGGTGATCGAACAAAAAATGTTGGTGTGGTTGATGCCGAGTACATTATTCACTACAATCGTCCCACTCTGGAGGCACAGATAACAGACAGTTTCAGATCATCTCAGGAAAAGGATCATAGAGTTGATAAAAAAACACATCATTTATCTGAAGTGAAGCAAATGCAACTCACAACTACAATACAACAATTGAGACAAGACACTTTGGAGAGTCTCAAAGGGCATCATGGTGTCATGTCCCTTGTGGTTCACACTAGGTTGGCTCAGGGGTTTCCACTAGAGGAAATGGGGTTAGCCGTAAGGATCCCGCACGCCACTGAGGGAGTGCCATTGAGCCTTGGCATAGATCGTCAAGAACTAGCCTCGATACGTAGAGCGTATTCTTGGCAATGCGGTTTTAGATTCCCCTTAACCGCTATGACACGTTTAAGAAGTGAAGCCTATAACAAGATAAACAAGTTGGTTGGCGAGCTAGTAGCCGAATGGATGTCTCAGCAAGTGTTCGTTCGTACCCGCTGCAGGATGTTATGGACATGCAAGGATGCATTTATTATACTCTAG
Protein sequence

>MsG0180004393.01.T01

MMSRHIAVVDQGKWWFAKRFLHPDIVAEYDYIFLWDEDLGVENFHPEKYVSIVKEEGLEISQPALDLKETFKAVIDGKGCDGSSTAPPCTGWIEMNGPCFPRAAWRCVWYMIQGDRTKNVGVVDAEYIIHYNRPTLEAQITDSFRSSQEKDHRVDKKTHHLSEVKQMQLTTTIQQLRQDTLESLKGHHGVMSLVVHTRLAQGFPLEEMGLAVRIPHATEGVPLSLGIDRQELASIRRAYSWQCGFRFPLTAMTRLRSEAYNKINKLVGELVAEWMSQQVFVRTRCRMLWTCKDAFIIL*