Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038652.01.T01 | KAE9618043.1 | 47.266 | 256 | 74 | 4 | 2 | 198 | 210 | 463 | 9.18E-54 | 192 |
| MsG0780038652.01.T01 | KAE9618043.1 | 78.125 | 64 | 12 | 1 | 1 | 62 | 131 | 194 | 2.49E-20 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038652.01.T01 | P33543 | 84.884 | 86 | 13 | 0 | 113 | 198 | 357 | 442 | 9.06E-44 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038652.01.T01 | A0A6A5PFW4 | 47.266 | 256 | 74 | 4 | 2 | 198 | 210 | 463 | 4.38e-54 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003656.01 | MsG0780038652.01 | 0.841162 | 5.616313e-58 | 8.181425e-55 |
| MsG0180003696.01 | MsG0780038652.01 | 0.839864 | 1.227681e-57 | 1.717727e-54 |
| MsG0180005388.01 | MsG0780038652.01 | -0.800535 | 1.377407e-48 | 6.429177e-46 |
| MsG0180006000.01 | MsG0780038652.01 | 0.800226 | 1.592068e-48 | 7.373234e-46 |
| MsG0280006311.01 | MsG0780038652.01 | 0.804381 | 2.219740e-49 | 1.142858e-46 |
| MsG0280011282.01 | MsG0780038652.01 | 0.820534 | 6.519542e-53 | 5.172251e-50 |
| MsG0380012471.01 | MsG0780038652.01 | 0.840143 | 1.038063e-57 | 1.465328e-54 |
| MsG0680031549.01 | MsG0780038652.01 | 0.810490 | 1.123383e-50 | 6.780871e-48 |
| MsG0480022325.01 | MsG0780038652.01 | 0.836585 | 8.583985e-57 | 1.086479e-53 |
| MsG0480023541.01 | MsG0780038652.01 | 0.808852 | 2.526177e-50 | 1.460105e-47 |
| MsG0580024035.01 | MsG0780038652.01 | 0.803540 | 3.319982e-49 | 1.672838e-46 |
| MsG0580025766.01 | MsG0780038652.01 | 0.803227 | 3.854245e-49 | 1.926337e-46 |
| MsG0380016703.01 | MsG0780038652.01 | 0.820423 | 6.912631e-53 | 5.467676e-50 |
| MsG0380016994.01 | MsG0780038652.01 | 0.800982 | 1.116018e-48 | 5.269097e-46 |
| MsG0380017239.01 | MsG0780038652.01 | 0.806201 | 9.228785e-50 | 4.979106e-47 |
| MsG0580026145.01 | MsG0780038652.01 | 0.823505 | 1.336354e-53 | 1.152839e-50 |
| MsG0580027208.01 | MsG0780038652.01 | 0.800733 | 1.254767e-48 | 5.886376e-46 |
| MsG0580027431.01 | MsG0780038652.01 | 0.807397 | 5.156824e-50 | 2.869300e-47 |
| MsG0580028060.01 | MsG0780038652.01 | 0.813383 | 2.631639e-51 | 1.716074e-48 |
| MsG0280008280.01 | MsG0780038652.01 | 0.828892 | 6.982964e-55 | 7.032363e-52 |
| MsG0280009514.01 | MsG0780038652.01 | 0.805631 | 1.216174e-49 | 6.466259e-47 |
| MsG0780036752.01 | MsG0780038652.01 | 0.811698 | 6.147429e-51 | 3.831255e-48 |
| MsG0780036815.01 | MsG0780038652.01 | 0.816757 | 4.691911e-52 | 3.353766e-49 |
| MsG0780036816.01 | MsG0780038652.01 | 0.806228 | 9.107721e-50 | 4.917309e-47 |
| MsG0780038652.01 | MsG0780039137.01 | 0.849288 | 3.559360e-60 | 6.715553e-57 |
| MsG0780038652.01 | MsG0780040509.01 | 0.821088 | 4.861613e-53 | 3.917124e-50 |
| MsG0780038652.01 | MsG0780040896.01 | 0.829430 | 5.169929e-55 | 5.290135e-52 |
| MsG0780038652.01 | MsG0780041063.01 | 0.813675 | 2.269851e-51 | 1.491901e-48 |
| MsG0780038652.01 | MsG0780041559.01 | 0.802649 | 5.074514e-49 | 2.499094e-46 |
| MsG0780038652.01 | MsG0880044782.01 | 0.812318 | 4.503938e-51 | 2.854477e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038652.01.T01 | MTR_7g059225 | 56.400 | 250 | 55 | 3 | 1 | 198 | 203 | 450 | 1.40e-54 | 184 |
| MsG0780038652.01.T01 | MTR_7g059225 | 95.238 | 63 | 3 | 0 | 1 | 63 | 127 | 189 | 4.93e-32 | 122 |
| MsG0780038652.01.T01 | MTR_4g014070 | 52.000 | 100 | 47 | 1 | 100 | 198 | 473 | 572 | 7.93e-23 | 95.9 |
| MsG0780038652.01.T01 | MTR_5g083480 | 45.745 | 94 | 51 | 0 | 105 | 198 | 474 | 567 | 6.30e-19 | 84.7 |
| MsG0780038652.01.T01 | MTR_5g083480 | 45.745 | 94 | 51 | 0 | 105 | 198 | 471 | 564 | 7.27e-19 | 84.3 |
| MsG0780038652.01.T01 | MTR_8g046290 | 42.529 | 87 | 49 | 1 | 113 | 198 | 51 | 137 | 9.30e-14 | 68.9 |
| MsG0780038652.01.T01 | MTR_8g107470 | 35.644 | 101 | 63 | 2 | 97 | 196 | 343 | 442 | 1.26e-13 | 69.3 |
| MsG0780038652.01.T01 | MTR_1g028890 | 29.741 | 232 | 114 | 10 | 2 | 196 | 139 | 358 | 1.36e-13 | 68.9 |
| MsG0780038652.01.T01 | MTR_4g014350 | 32.520 | 123 | 79 | 1 | 78 | 196 | 359 | 481 | 1.55e-13 | 68.9 |
| MsG0780038652.01.T01 | MTR_4g113100 | 33.051 | 118 | 68 | 3 | 80 | 196 | 307 | 414 | 6.42e-13 | 67.0 |
| MsG0780038652.01.T01 | MTR_1g110280 | 33.333 | 87 | 58 | 0 | 110 | 196 | 339 | 425 | 1.22e-12 | 66.2 |
| MsG0780038652.01.T01 | MTR_5g068210 | 32.800 | 125 | 79 | 3 | 75 | 196 | 258 | 380 | 2.58e-12 | 65.5 |
| MsG0780038652.01.T01 | MTR_6g470960 | 38.614 | 101 | 59 | 3 | 98 | 196 | 346 | 445 | 7.12e-12 | 63.9 |
| MsG0780038652.01.T01 | MTR_5g055470 | 27.559 | 127 | 89 | 1 | 73 | 196 | 281 | 407 | 8.08e-12 | 63.9 |
| MsG0780038652.01.T01 | MTR_5g087780 | 38.462 | 104 | 61 | 2 | 98 | 198 | 677 | 780 | 1.02e-11 | 63.5 |
| MsG0780038652.01.T01 | MTR_7g103440 | 34.483 | 87 | 57 | 0 | 110 | 196 | 357 | 443 | 1.14e-11 | 63.5 |
| MsG0780038652.01.T01 | MTR_3g093710 | 26.000 | 250 | 123 | 9 | 2 | 196 | 168 | 410 | 1.88e-11 | 62.8 |
| MsG0780038652.01.T01 | MTR_3g094710 | 30.435 | 92 | 64 | 0 | 111 | 202 | 734 | 825 | 2.37e-11 | 62.8 |
| MsG0780038652.01.T01 | MTR_4g074080 | 33.010 | 103 | 66 | 1 | 97 | 196 | 332 | 434 | 7.09e-11 | 61.2 |
| MsG0780038652.01.T01 | MTR_1g061590 | 33.721 | 86 | 57 | 0 | 111 | 196 | 345 | 430 | 7.37e-11 | 61.2 |
| MsG0780038652.01.T01 | MTR_5g078080 | 36.782 | 87 | 52 | 2 | 112 | 196 | 322 | 407 | 7.39e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038652.01.T01 | AT3G24660 | 84.884 | 86 | 13 | 0 | 113 | 198 | 357 | 442 | 9.24e-45 | 157 |
| MsG0780038652.01.T01 | AT3G24660 | 79.365 | 63 | 13 | 0 | 1 | 63 | 124 | 186 | 7.26e-26 | 104 |
| MsG0780038652.01.T01 | AT3G51740 | 43.860 | 114 | 64 | 0 | 85 | 198 | 493 | 606 | 3.09e-21 | 91.3 |
| MsG0780038652.01.T01 | AT5G07620 | 41.129 | 124 | 65 | 4 | 79 | 198 | 29 | 148 | 1.28e-17 | 80.1 |
| MsG0780038652.01.T01 | AT5G61570 | 41.818 | 110 | 61 | 2 | 92 | 198 | 45 | 154 | 8.66e-17 | 77.8 |
| MsG0780038652.01.T01 | AT5G61570 | 41.818 | 110 | 61 | 2 | 92 | 198 | 45 | 154 | 9.38e-17 | 77.8 |
| MsG0780038652.01.T01 | AT2G27060 | 33.019 | 106 | 70 | 1 | 94 | 198 | 603 | 708 | 7.70e-13 | 67.0 |
| MsG0780038652.01.T01 | AT2G27060 | 33.019 | 106 | 70 | 1 | 94 | 198 | 696 | 801 | 8.04e-13 | 67.0 |
| MsG0780038652.01.T01 | AT1G67510 | 32.692 | 104 | 70 | 0 | 93 | 196 | 374 | 477 | 2.67e-12 | 65.5 |
| MsG0780038652.01.T01 | AT1G68400 | 35.227 | 88 | 56 | 1 | 110 | 196 | 343 | 430 | 3.83e-12 | 64.7 |
| MsG0780038652.01.T01 | AT2G36570 | 31.000 | 100 | 68 | 1 | 98 | 196 | 326 | 425 | 1.38e-11 | 63.2 |
| MsG0780038652.01.T01 | AT3G56100 | 29.630 | 216 | 97 | 3 | 2 | 169 | 283 | 491 | 2.19e-11 | 62.4 |
| MsG0780038652.01.T01 | AT2G26730 | 36.190 | 105 | 60 | 4 | 96 | 196 | 316 | 417 | 5.46e-11 | 61.6 |
| MsG0780038652.01.T01 | AT1G69990 | 27.586 | 232 | 114 | 8 | 1 | 191 | 139 | 357 | 9.82e-11 | 60.8 |
Find 51 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGGAAATTTGTTATC+TGG | 0.157905 | 7:-50526613 | MsG0780038652.01.T01:CDS |
| AGGGAAGCTTATGTTGTTTC+CGG | 0.209387 | 7:-50526076 | MsG0780038652.01.T01:CDS |
| CTTGTTTCTCTTAAACTTCA+TGG | 0.221094 | 7:-50526628 | MsG0780038652.01.T01:CDS |
| TATGACAGGTGCTGTGGTTT+TGG | 0.251426 | 7:-50526225 | MsG0780038652.01.T01:intron |
| GTCCCTCTTGAACTTGGTTA+TGG | 0.282437 | 7:-50526733 | MsG0780038652.01.T01:CDS |
| GTGTTCTTCCACCTTCTATA+TGG | 0.285394 | 7:-50526666 | MsG0780038652.01.T01:CDS |
| TATGCAAAACAAGAAGAAAA+AGG | 0.316870 | 7:-50526183 | MsG0780038652.01.T01:CDS |
| GGGAATTCGGTTGGTGGAAA+TGG | 0.349593 | 7:-50526102 | MsG0780038652.01.T01:CDS |
| GTGTTATGGAACAGCTTATA+AGG | 0.349971 | 7:-50525992 | MsG0780038652.01.T01:CDS |
| CAAGGATAGGACTTCGTGTT+TGG | 0.350228 | 7:-50525914 | MsG0780038652.01.T01:CDS |
| TCACACAAATTCCATATAGA+AGG | 0.364787 | 7:+50526655 | None:intergenic |
| TTCATGGAAATTTGTTATCT+GGG | 0.374493 | 7:-50526612 | MsG0780038652.01.T01:intron |
| GGGAAGCTTATGTTGTTTCC+GGG | 0.386206 | 7:-50526075 | MsG0780038652.01.T01:CDS |
| CCTTTGAGAGCTTTCTATCA+AGG | 0.408628 | 7:-50525847 | MsG0780038652.01.T01:CDS |
| AGAAAACGGTGGTGGGAATT+CGG | 0.419472 | 7:-50526115 | MsG0780038652.01.T01:CDS |
| GTTATGGAGAAGACGTGTTA+TGG | 0.445078 | 7:-50526006 | MsG0780038652.01.T01:CDS |
| CTTAATATTAACTCATTGAC+TGG | 0.445305 | 7:-50526760 | MsG0780038652.01.T01:CDS |
| TTGGCGGTTATAAAACAGTT+GGG | 0.460951 | 7:-50525895 | MsG0780038652.01.T01:CDS |
| GGTACTGTCCCTCTTGAACT+TGG | 0.469367 | 7:-50526739 | MsG0780038652.01.T01:CDS |
| GAATGCGACCGGTCAAGTTA+TGG | 0.482181 | 7:-50526022 | MsG0780038652.01.T01:CDS |
| CAATTGCTTTGAGGTTGTTG+AGG | 0.488264 | 7:-50525948 | MsG0780038652.01.T01:CDS |
| GGATAGGACTTCGTGTTTGG+CGG | 0.501969 | 7:-50525911 | MsG0780038652.01.T01:CDS |
| AGATAAAGACTTTGAAGCAT+AGG | 0.507092 | 7:+50526781 | None:intergenic |
| GGTGGTGGGAATTCGGTTGG+TGG | 0.516136 | 7:-50526108 | MsG0780038652.01.T01:CDS |
| AGCTTTCTATCAAGGAAAAG+AGG | 0.516335 | 7:-50525839 | MsG0780038652.01.T01:CDS |
| CAGTCTTATGACAGGTGCTG+TGG | 0.518253 | 7:-50526231 | MsG0780038652.01.T01:intron |
| TTTGGCGGTTATAAAACAGT+TGG | 0.521791 | 7:-50525896 | MsG0780038652.01.T01:CDS |
| AATTGCTTTGAGGTTGTTGA+GGG | 0.531470 | 7:-50525947 | MsG0780038652.01.T01:CDS |
| ATGGTGGAACAATTGCTTTG+AGG | 0.536941 | 7:-50525957 | MsG0780038652.01.T01:CDS |
| TCGGTTGGTGGAAATGGTGA+AGG | 0.538604 | 7:-50526096 | MsG0780038652.01.T01:CDS |
| GATGATGAAGAAAACGGTGG+TGG | 0.541083 | 7:-50526123 | MsG0780038652.01.T01:CDS |
| GAAGAAGATGATGAAGAAAA+CGG | 0.549478 | 7:-50526129 | MsG0780038652.01.T01:CDS |
| AACGGTGGTGGGAATTCGGT+TGG | 0.551228 | 7:-50526111 | MsG0780038652.01.T01:CDS |
| CCTTGATAGAAAGCTCTCAA+AGG | 0.557094 | 7:+50525847 | None:intergenic |
| CACAAATTCCATATAGAAGG+TGG | 0.559329 | 7:+50526658 | None:intergenic |
| GCTTTGAGGTTGTTGAGGGA+AGG | 0.559386 | 7:-50525943 | MsG0780038652.01.T01:CDS |
| ATGATGAAGAAAACGGTGGT+GGG | 0.566209 | 7:-50526122 | MsG0780038652.01.T01:CDS |
| AAGGCTAAGCTTGCTGATGG+TGG | 0.568602 | 7:-50525973 | MsG0780038652.01.T01:CDS |
| GGGAAGGTACTTGCAAGGAT+AGG | 0.576828 | 7:-50525927 | MsG0780038652.01.T01:CDS |
| GCTTTCTATCAAGGAAAAGA+GGG | 0.585439 | 7:-50525838 | MsG0780038652.01.T01:CDS |
| CGTCTTCTCCATAACTTGAC+CGG | 0.597865 | 7:+50526014 | None:intergenic |
| TGGCGGTTATAAAACAGTTG+GGG | 0.598878 | 7:-50525894 | MsG0780038652.01.T01:CDS |
| CGGTTGGTGGAAATGGTGAA+GGG | 0.608332 | 7:-50526095 | MsG0780038652.01.T01:CDS |
| GAACCATAACCAAGTTCAAG+AGG | 0.608426 | 7:+50526730 | None:intergenic |
| GATGATGTGTTGAATGCGAC+CGG | 0.613377 | 7:-50526033 | MsG0780038652.01.T01:CDS |
| GTTGAGGGAAGGTACTTGCA+AGG | 0.620223 | 7:-50525932 | MsG0780038652.01.T01:CDS |
| AGTGTCAAATTCTCACCACC+CGG | 0.628477 | 7:+50526057 | None:intergenic |
| TATAAGGCTAAGCTTGCTGA+TGG | 0.644623 | 7:-50525976 | MsG0780038652.01.T01:CDS |
| AACCATAACCAAGTTCAAGA+GGG | 0.674248 | 7:+50526731 | None:intergenic |
| AAGCTTATGTTGTTTCCGGG+TGG | 0.675040 | 7:-50526072 | MsG0780038652.01.T01:CDS |
| GAAGATGATGAAGAAAACGG+TGG | 0.767669 | 7:-50526126 | MsG0780038652.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTCATAATAACTTTAGT+GGG | - | Chr7:50526204-50526223 | MsG0780038652.01.T01:CDS | 20.0% |
| ! | ATGCAAAACAAGAAGAAAAA+GGG | - | Chr7:50526415-50526434 | MsG0780038652.01.T01:intron | 25.0% |
| ! | CAAAATTTACAAGATGAATC+AGG | + | Chr7:50526032-50526051 | None:intergenic | 25.0% |
| ! | CTTAATATTAACTCATTGAC+TGG | - | Chr7:50525837-50525856 | MsG0780038652.01.T01:CDS | 25.0% |
| ! | CTTTCTCATAATAACTTTAG+TGG | - | Chr7:50526203-50526222 | MsG0780038652.01.T01:CDS | 25.0% |
| ! | TATGCAAAACAAGAAGAAAA+AGG | - | Chr7:50526414-50526433 | MsG0780038652.01.T01:intron | 25.0% |
| ! | TTAGGGAATAATATGTTTAG+TGG | - | Chr7:50526134-50526153 | MsG0780038652.01.T01:CDS | 25.0% |
| ! | TTCTCATAATAACTTTAGTG+GGG | - | Chr7:50526205-50526224 | MsG0780038652.01.T01:CDS | 25.0% |
| !! | ATTTAGGTGGGAATAAATTT+TGG | - | Chr7:50526062-50526081 | MsG0780038652.01.T01:CDS | 25.0% |
| !! | ATTTTGCAGTTTCTTGATTT+AGG | - | Chr7:50526046-50526065 | MsG0780038652.01.T01:CDS | 25.0% |
| !! | TTGAGTGATAATCTTTTGAA+TGG | - | Chr7:50525909-50525928 | MsG0780038652.01.T01:CDS | 25.0% |
| !! | TTTAGGTGGGAATAAATTTT+GGG | - | Chr7:50526063-50526082 | MsG0780038652.01.T01:CDS | 25.0% |
| !!! | CTTTAAAACAGCTTGATTTA+GGG | - | Chr7:50526117-50526136 | MsG0780038652.01.T01:CDS | 25.0% |
| !!! | TTCATGGAAATTTGTTATCT+GGG | - | Chr7:50525985-50526004 | MsG0780038652.01.T01:CDS | 25.0% |
| CAAGAATTCTTCATTGAGTT+TGG | - | Chr7:50526322-50526341 | MsG0780038652.01.T01:intron | 30.0% | |
| CCAAAACTAGTAACAAAATC+AGG | + | Chr7:50526095-50526114 | None:intergenic | 30.0% | |
| GAAGAAGATGATGAAGAAAA+CGG | - | Chr7:50526468-50526487 | MsG0780038652.01.T01:intron | 30.0% | |
| GTTATTCCTTATGGTTTAGT+TGG | - | Chr7:50526158-50526177 | MsG0780038652.01.T01:CDS | 30.0% | |
| TCACACAAATTCCATATAGA+AGG | + | Chr7:50525945-50525964 | None:intergenic | 30.0% | |
| ! | CTTGTTTCTCTTAAACTTCA+TGG | - | Chr7:50525969-50525988 | MsG0780038652.01.T01:CDS | 30.0% |
| !! | CCTGATTTTGTTACTAGTTT+TGG | - | Chr7:50526092-50526111 | MsG0780038652.01.T01:CDS | 30.0% |
| !! | CTTCATGGAAATTTGTTATC+TGG | - | Chr7:50525984-50526003 | MsG0780038652.01.T01:CDS | 30.0% |
| !! | GCTTTAAAACAGCTTGATTT+AGG | - | Chr7:50526116-50526135 | MsG0780038652.01.T01:CDS | 30.0% |
| !! | TTTAGTGGTGTTATTCCTTA+TGG | - | Chr7:50526149-50526168 | MsG0780038652.01.T01:CDS | 30.0% |
| AAACAAGAAGAAAAAGGGAG+TGG | - | Chr7:50526420-50526439 | MsG0780038652.01.T01:intron | 35.0% | |
| AACCATAACCAAGTTCAAGA+GGG | + | Chr7:50525869-50525888 | None:intergenic | 35.0% | |
| AGCTTTCTATCAAGGAAAAG+AGG | - | Chr7:50526758-50526777 | MsG0780038652.01.T01:CDS | 35.0% | |
| CACAAATTCCATATAGAAGG+TGG | + | Chr7:50525942-50525961 | None:intergenic | 35.0% | |
| CTAAGTCCAACTAAACCATA+AGG | + | Chr7:50526167-50526186 | None:intergenic | 35.0% | |
| CTTATGGTTTAGTTGGACTT+AGG | - | Chr7:50526165-50526184 | MsG0780038652.01.T01:CDS | 35.0% | |
| GCTTTCTATCAAGGAAAAGA+GGG | - | Chr7:50526759-50526778 | MsG0780038652.01.T01:CDS | 35.0% | |
| GTGTTATGGAACAGCTTATA+AGG | - | Chr7:50526605-50526624 | MsG0780038652.01.T01:intron | 35.0% | |
| TCATAATAACTTTAGTGGGG+TGG | - | Chr7:50526208-50526227 | MsG0780038652.01.T01:CDS | 35.0% | |
| TGCAGTTTCTTGATTTAGGT+GGG | - | Chr7:50526050-50526069 | MsG0780038652.01.T01:CDS | 35.0% | |
| TTGCAGTTTCTTGATTTAGG+TGG | - | Chr7:50526049-50526068 | MsG0780038652.01.T01:CDS | 35.0% | |
| TTGGCGGTTATAAAACAGTT+GGG | - | Chr7:50526702-50526721 | MsG0780038652.01.T01:CDS | 35.0% | |
| TTTGGCGGTTATAAAACAGT+TGG | - | Chr7:50526701-50526720 | MsG0780038652.01.T01:CDS | 35.0% | |
| ! | AAAGGTGTACCACATAAATC+AGG | + | Chr7:50526290-50526309 | None:intergenic | 35.0% |
| ! | CTTGTTATCAGTCTTATGAC+AGG | - | Chr7:50526358-50526377 | MsG0780038652.01.T01:intron | 35.0% |
| !! | AATTGCTTTGAGGTTGTTGA+GGG | - | Chr7:50526650-50526669 | MsG0780038652.01.T01:CDS | 35.0% |
| !!! | GTTTTGGCTTCATTGTTGAT+TGG | - | Chr7:50526388-50526407 | MsG0780038652.01.T01:intron | 35.0% |
| !!! | TCGGTGTTGATGTTTTTGAA+GGG | - | Chr7:50526258-50526277 | MsG0780038652.01.T01:intron | 35.0% |
| !!! | TTCGGTGTTGATGTTTTTGA+AGG | - | Chr7:50526257-50526276 | MsG0780038652.01.T01:intron | 35.0% |
| ATGATGAAGAAAACGGTGGT+GGG | - | Chr7:50526475-50526494 | MsG0780038652.01.T01:intron | 40.0% | |
| CAAGATGAATCAGGTAATGC+AGG | + | Chr7:50526023-50526042 | None:intergenic | 40.0% | |
| CCTTGATAGAAAGCTCTCAA+AGG | + | Chr7:50526753-50526772 | None:intergenic | 40.0% | |
| GAACCATAACCAAGTTCAAG+AGG | + | Chr7:50525870-50525889 | None:intergenic | 40.0% | |
| GAAGATGATGAAGAAAACGG+TGG | - | Chr7:50526471-50526490 | MsG0780038652.01.T01:intron | 40.0% | |
| GGGAATAGTCCTGATTTATG+TGG | - | Chr7:50526278-50526297 | MsG0780038652.01.T01:intron | 40.0% | |
| GTGTTCTTCCACCTTCTATA+TGG | - | Chr7:50525931-50525950 | MsG0780038652.01.T01:CDS | 40.0% | |
| GTTATGGAGAAGACGTGTTA+TGG | - | Chr7:50526591-50526610 | MsG0780038652.01.T01:intron | 40.0% | |
| TGGCGGTTATAAAACAGTTG+GGG | - | Chr7:50526703-50526722 | MsG0780038652.01.T01:CDS | 40.0% | |
| TTCGACGATTCTCCGAAAAA+TGG | + | Chr7:50526236-50526255 | None:intergenic | 40.0% | |
| TTCGGAGAATCGTCGAAATT+CGG | - | Chr7:50526239-50526258 | MsG0780038652.01.T01:intron | 40.0% | |
| TTCTTGCCACAACTTTGCAA+AGG | + | Chr7:50526308-50526327 | None:intergenic | 40.0% | |
| ! | ATGGTGGAACAATTGCTTTG+AGG | - | Chr7:50526640-50526659 | MsG0780038652.01.T01:CDS | 40.0% |
| ! | CCTTTGAGAGCTTTCTATCA+AGG | - | Chr7:50526750-50526769 | MsG0780038652.01.T01:CDS | 40.0% |
| !! | AGGGAAGCTTATGTTGTTTC+CGG | - | Chr7:50526521-50526540 | MsG0780038652.01.T01:intron | 40.0% |
| !! | CAATTGCTTTGAGGTTGTTG+AGG | - | Chr7:50526649-50526668 | MsG0780038652.01.T01:CDS | 40.0% |
| !! | TATAAGGCTAAGCTTGCTGA+TGG | - | Chr7:50526621-50526640 | MsG0780038652.01.T01:CDS | 40.0% |
| AGTGTCAAATTCTCACCACC+CGG | + | Chr7:50526543-50526562 | None:intergenic | 45.0% | |
| CAAGGATAGGACTTCGTGTT+TGG | - | Chr7:50526683-50526702 | MsG0780038652.01.T01:CDS | 45.0% | |
| CGTCTTCTCCATAACTTGAC+CGG | + | Chr7:50526586-50526605 | None:intergenic | 45.0% | |
| GATGATGAAGAAAACGGTGG+TGG | - | Chr7:50526474-50526493 | MsG0780038652.01.T01:intron | 45.0% | |
| GATGATGTGTTGAATGCGAC+CGG | - | Chr7:50526564-50526583 | MsG0780038652.01.T01:intron | 45.0% | |
| GGTACACCTTTGCAAAGTTG+TGG | - | Chr7:50526299-50526318 | MsG0780038652.01.T01:intron | 45.0% | |
| GTCCCTCTTGAACTTGGTTA+TGG | - | Chr7:50525864-50525883 | MsG0780038652.01.T01:CDS | 45.0% | |
| !! | AAGCTTATGTTGTTTCCGGG+TGG | - | Chr7:50526525-50526544 | MsG0780038652.01.T01:intron | 45.0% |
| !! | AGAAAACGGTGGTGGGAATT+CGG | - | Chr7:50526482-50526501 | MsG0780038652.01.T01:intron | 45.0% |
| !! | ATTGAGTTTGGTGCTGTTGC+TGG | - | Chr7:50526334-50526353 | MsG0780038652.01.T01:intron | 45.0% |
| !! | GGGAAGCTTATGTTGTTTCC+GGG | - | Chr7:50526522-50526541 | MsG0780038652.01.T01:intron | 45.0% |
| !! | TATGACAGGTGCTGTGGTTT+TGG | - | Chr7:50526372-50526391 | MsG0780038652.01.T01:intron | 45.0% |
| GAATGCGACCGGTCAAGTTA+TGG | - | Chr7:50526575-50526594 | MsG0780038652.01.T01:intron | 50.0% | |
| GGATAGGACTTCGTGTTTGG+CGG | - | Chr7:50526686-50526705 | MsG0780038652.01.T01:CDS | 50.0% | |
| GGTACTGTCCCTCTTGAACT+TGG | - | Chr7:50525858-50525877 | MsG0780038652.01.T01:CDS | 50.0% | |
| ! | CAGTCTTATGACAGGTGCTG+TGG | - | Chr7:50526366-50526385 | MsG0780038652.01.T01:intron | 50.0% |
| !! | AAGGCTAAGCTTGCTGATGG+TGG | - | Chr7:50526624-50526643 | MsG0780038652.01.T01:CDS | 50.0% |
| !! | CGGTTGGTGGAAATGGTGAA+GGG | - | Chr7:50526502-50526521 | MsG0780038652.01.T01:intron | 50.0% |
| !! | GCTTTGAGGTTGTTGAGGGA+AGG | - | Chr7:50526654-50526673 | MsG0780038652.01.T01:CDS | 50.0% |
| !! | GGGAAGGTACTTGCAAGGAT+AGG | - | Chr7:50526670-50526689 | MsG0780038652.01.T01:CDS | 50.0% |
| !! | GGGAATTCGGTTGGTGGAAA+TGG | - | Chr7:50526495-50526514 | MsG0780038652.01.T01:intron | 50.0% |
| !! | GTTGAGGGAAGGTACTTGCA+AGG | - | Chr7:50526665-50526684 | MsG0780038652.01.T01:CDS | 50.0% |
| !! | TCGGTTGGTGGAAATGGTGA+AGG | - | Chr7:50526501-50526520 | MsG0780038652.01.T01:intron | 50.0% |
| !!! | AGTGGGGTGGTGCCATTTTT+CGG | - | Chr7:50526221-50526240 | MsG0780038652.01.T01:intron | 50.0% |
| !! | AACGGTGGTGGGAATTCGGT+TGG | - | Chr7:50526486-50526505 | MsG0780038652.01.T01:intron | 55.0% |
| !! | GGTGGTGGGAATTCGGTTGG+TGG | - | Chr7:50526489-50526508 | MsG0780038652.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 50525819 | 50526800 | 50525819 | ID=MsG0780038652.01;Name=MsG0780038652.01 |
| Chr7 | mRNA | 50525819 | 50526800 | 50525819 | ID=MsG0780038652.01.T01;Parent=MsG0780038652.01;Name=MsG0780038652.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|2|0|202 |
| Chr7 | exon | 50526613 | 50526800 | 50526613 | ID=MsG0780038652.01.T01:exon:14783;Parent=MsG0780038652.01.T01 |
| Chr7 | exon | 50525819 | 50526239 | 50525819 | ID=MsG0780038652.01.T01:exon:14782;Parent=MsG0780038652.01.T01 |
| Chr7 | CDS | 50526613 | 50526800 | 50526613 | ID=MsG0780038652.01.T01:cds;Parent=MsG0780038652.01.T01 |
| Chr7 | CDS | 50525819 | 50526239 | 50525819 | ID=MsG0780038652.01.T01:cds;Parent=MsG0780038652.01.T01 |
| Gene Sequence |
| Protein sequence |
