AlfalfaGEDB | MsG0780039910.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039910.01

KEGG: -
GO: GO:0004252 GO:0004672 GO:0005524 GO:0006468 GO:0006508
PFAM: PF00069 PF00082 PF05922

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039910.01.T01	XP_003624297.2	74.282	696	141	7	308	980	100	780	0	1000
MsG0780039910.01.T01	XP_003624297.2	93.023	86	6	0	197	282	68	153	2.56E-32	148

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039910.01.T01	I1N462	61.974	689	217	10	308	979	99	759	0	826

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039910.01.T01	G7KTE7	74.282	696	141	7	308	980	100	780	0.0	1000

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003405.01	MsG0780039910.01	-0.821429	4.055885e-53	3.298978e-50
MsG0280006381.01	MsG0780039910.01	-0.804633	1.967081e-49	1.019308e-46
MsG0280006579.01	MsG0780039910.01	0.810195	1.300840e-50	7.790833e-48
MsG0280007288.01	MsG0780039910.01	-0.801995	6.920889e-49	3.352066e-46
MsG0280009526.01	MsG0780039910.01	0.825221	5.276665e-54	4.780184e-51
MsG0280011281.01	MsG0780039910.01	-0.801474	8.852623e-49	4.231558e-46
MsG0380011968.01	MsG0780039910.01	0.801057	1.077344e-48	5.096125e-46
MsG0380014639.01	MsG0780039910.01	-0.842891	1.959603e-58	3.013389e-55
MsG0380014642.01	MsG0780039910.01	-0.801652	8.140484e-49	3.908504e-46
MsG0380017030.01	MsG0780039910.01	0.834196	3.447049e-56	4.060675e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039910.01.T01	MTR_7g081380	74.282	696	141	7	308	980	100	780	0.0	1000
MsG0780039910.01.T01	MTR_7g081380	93.023	86	6	0	197	282	68	153	3.10e-36	148
MsG0780039910.01.T01	MTR_7g081420	73.401	688	137	5	308	979	100	757	0.0	993
MsG0780039910.01.T01	MTR_7g081420	91.860	86	7	0	197	282	68	153	2.72e-36	148
MsG0780039910.01.T01	MTR_7g081500	75.877	684	128	6	308	980	99	756	0.0	992
MsG0780039910.01.T01	MTR_7g081500	93.023	86	6	0	197	282	67	152	7.45e-37	150
MsG0780039910.01.T01	MTR_7g081580	69.635	685	169	6	308	980	100	757	0.0	937
MsG0780039910.01.T01	MTR_7g081580	91.667	84	7	0	199	282	70	153	3.57e-35	144
MsG0780039910.01.T01	MTR_7g481600	69.489	685	170	6	308	980	100	757	0.0	917
MsG0780039910.01.T01	MTR_7g481600	91.667	84	7	0	199	282	70	153	3.98e-35	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039910.01.T01	AT2G04160	46.449	704	324	17	285	975	76	739	0.0	566
MsG0780039910.01.T01	AT2G04160	58.696	92	35	1	194	282	64	155	3.14e-24	110
MsG0780039910.01.T01	AT5G59810	46.569	685	302	20	308	976	109	745	0.0	553
MsG0780039910.01.T01	AT5G59810	58.824	102	38	2	184	282	65	165	3.00e-26	116
MsG0780039910.01.T01	AT5G67360	38.115	732	385	20	257	973	43	721	1.51e-140	439
MsG0780039910.01.T01	AT2G05920	38.952	706	363	20	285	973	61	715	7.11e-134	421
MsG0780039910.01.T01	AT5G51750	37.553	711	375	19	285	973	80	743	3.79e-132	417
MsG0780039910.01.T01	AT3G14240	38.034	702	359	20	309	981	87	741	2.33e-129	410
MsG0780039910.01.T01	AT5G45650	36.901	710	354	20	312	976	93	753	1.43e-125	400
MsG0780039910.01.T01	AT5G45650	33.962	106	50	2	197	282	57	162	6.47e-11	67.0

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Find 192 sgRNAs with CRISPR-Local

Find 811 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATTCCGAGGTGTT+TGG	0.430403	7:-70339405	MsG0780039910.01.T01:CDS
AAACAAACCAGGAAGCTAAT+TGG	0.317783	7:-70341057	MsG0780039910.01.T01:intron
AAACCCATGAGGAAATTGTC+TGG	0.531680	7:+70349666	None:intergenic
AAACCTTGACGATTGTCTGT+TGG	0.655270	7:+70338370	None:intergenic
AAACGTGGATAAATATTTCA+AGG	0.494306	7:-70347269	MsG0780039910.01.T01:CDS
AAAGCATATGAACGTGATAA+CGG	0.548391	7:-70341018	MsG0780039910.01.T01:CDS
AAAGCCAGACAATTTCCTCA+TGG	0.544831	7:-70349670	MsG0780039910.01.T01:CDS
AAATCAGCTATCATGACCAC+CGG	0.620394	7:-70338244	MsG0780039910.01.T01:intron
AACATGACATTTACTTGTTC+AGG	0.339929	7:-70337325	MsG0780039910.01.T01:CDS
AACATTAGTAACACTTCCAG+GGG	0.631324	7:+70340615	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTATCCCAACATTGA+TGG	+	Chr7:70345788-70345807	None:intergenic	30.0%
AAAGAGTTGTATAGGCAATA+TGG	-	Chr7:70337463-70337482	MsG0780039910.01.T01:CDS	30.0%
AAAGCATATGAACGTGATAA+CGG	-	Chr7:70346673-70346692	MsG0780039910.01.T01:intron	30.0%
AACATGACATTTACTTGTTC+AGG	-	Chr7:70350366-70350385	MsG0780039910.01.T01:intron	30.0%
AAGAAAATAGAATCAATGCC+AGG	+	Chr7:70338538-70338557	None:intergenic	30.0%
AAGAGTTGTATAGGCAATAT+GGG	-	Chr7:70337464-70337483	MsG0780039910.01.T01:CDS	30.0%
AATCATATCGTTATGCAAGT+TGG	+	Chr7:70342345-70342364	None:intergenic	30.0%
AATGGATCTTAGTTCAAACA+AGG	+	Chr7:70338650-70338669	None:intergenic	30.0%
AATTCAGCCATCAATACTAA+AGG	-	Chr7:70349104-70349123	MsG0780039910.01.T01:intron	30.0%
AATTGATACATAACAAGCGT+TGG	+	Chr7:70338124-70338143	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	70337081	70350632	70337081	ID=MsG0780039910.01;Name=MsG0780039910.01
Chr7	mRNA	70337081	70350632	70337081	ID=MsG0780039910.01.T01;Parent=MsG0780039910.01;Name=MsG0780039910.01.T01;_AED=0.48;_eAED=0.53;_QI=0\|0.44\|0.57\|1\|0.66\|0.68\|19\|0\|985
Chr7	exon	70350587	70350632	70350587	ID=MsG0780039910.01.T01:exon:13264;Parent=MsG0780039910.01.T01
Chr7	exon	70350433	70350473	70350433	ID=MsG0780039910.01.T01:exon:13263;Parent=MsG0780039910.01.T01
Chr7	exon	70349647	70349742	70349647	ID=MsG0780039910.01.T01:exon:13262;Parent=MsG0780039910.01.T01
Chr7	exon	70349481	70349548	70349481	ID=MsG0780039910.01.T01:exon:13261;Parent=MsG0780039910.01.T01
Chr7	exon	70348450	70348511	70348450	ID=MsG0780039910.01.T01:exon:13260;Parent=MsG0780039910.01.T01
Chr7	exon	70347617	70347706	70347617	ID=MsG0780039910.01.T01:exon:13259;Parent=MsG0780039910.01.T01
Chr7	exon	70347202	70347388	70347202	ID=MsG0780039910.01.T01:exon:13258;Parent=MsG0780039910.01.T01
Chr7	exon	70343963	70344060	70343963	ID=MsG0780039910.01.T01:exon:13257;Parent=MsG0780039910.01.T01
Chr7	exon	70343658	70343849	70343658	ID=MsG0780039910.01.T01:exon:13256;Parent=MsG0780039910.01.T01
Chr7	exon	70342819	70343019	70342819	ID=MsG0780039910.01.T01:exon:13255;Parent=MsG0780039910.01.T01
Chr7	exon	70341438	70341504	70341438	ID=MsG0780039910.01.T01:exon:13254;Parent=MsG0780039910.01.T01
Chr7	exon	70341292	70341327	70341292	ID=MsG0780039910.01.T01:exon:13253;Parent=MsG0780039910.01.T01
Chr7	exon	70340531	70341068	70340531	ID=MsG0780039910.01.T01:exon:13252;Parent=MsG0780039910.01.T01
Chr7	exon	70340329	70340423	70340329	ID=MsG0780039910.01.T01:exon:13251;Parent=MsG0780039910.01.T01
Chr7	exon	70340093	70340205	70340093	ID=MsG0780039910.01.T01:exon:13250;Parent=MsG0780039910.01.T01
Chr7	exon	70339669	70339876	70339669	ID=MsG0780039910.01.T01:exon:13249;Parent=MsG0780039910.01.T01
Chr7	exon	70339375	70339507	70339375	ID=MsG0780039910.01.T01:exon:13248;Parent=MsG0780039910.01.T01
Chr7	exon	70338245	70338461	70338245	ID=MsG0780039910.01.T01:exon:13247;Parent=MsG0780039910.01.T01
Chr7	exon	70337081	70337550	70337081	ID=MsG0780039910.01.T01:exon:13246;Parent=MsG0780039910.01.T01
Chr7	CDS	70350587	70350632	70350587	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70350433	70350473	70350433	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70349647	70349742	70349647	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70349481	70349548	70349481	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70348450	70348511	70348450	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70347617	70347706	70347617	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70347202	70347388	70347202	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70343963	70344060	70343963	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70343658	70343849	70343658	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70342819	70343019	70342819	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70341438	70341504	70341438	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70341292	70341327	70341292	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70340531	70341068	70340531	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70340329	70340423	70340329	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70340093	70340205	70340093	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70339669	70339876	70339669	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70339375	70339507	70339375	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70338245	70338461	70338245	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01
Chr7	CDS	70337081	70337550	70337081	ID=MsG0780039910.01.T01:cds;Parent=MsG0780039910.01.T01

Gene Sequence

>MsG0780039910.01.T01

ATGGAACCTCGAATTGGGAATAAGTTCCGTCTTGGGAGGAAAATTGGTACCAATATTCAAACTAATGAAGAAGTCGCGATTAAGCTTATAAATCGAGTTGAATTTGTTCATACCAAGTCATTTTTACATCGGGACATAAAGCCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACATCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGTGCACATCAGCATATTCTCTACAGAGAGAGTAAGAATCTGACGGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGTTTCGCGATATCAGTTATGTGCAATTGGGTTTTGTCGTGGGTTTCGCCGTGGTTTGCAGTTCTTCAGCTCTCCTACTTCAGTTTCTCAAGGCATGTGTCAGCCTTGCAAAGAATGTCGGAGAGATGAGAACAGTGTTGTTCGAGAGGGTGCAGCTCGAAATCTTGCTATGCTGCTTCCACTTTTCCCAAACGTGGATAAATATTTCAAGGTCAGCCTCACTATATTTGCTTCGAGGCAGTCATGGAGAAGGTTTCTGACTTGTGACTTTGCTACAAACAAAGAGAATGCAAAAGAAGCAATAATTTATTCATATAATAAACAGATCAATGGCTTTGCAGCTATACTTGAAGAAGAAGAAGCTGCACAAATTGCAAAAAATCCAAAGGTGGTATCTGTGTTCTTGAGCAAAGAGCATAAACTGCACACTACACGTTCTTGGGAATTTCTTGGACTAAGTACAAATGATATCAACTCAGCTTGGCAAAAGGGAAGGTTTGGTGAAAATACCATTATAGCTAACGTTGATACAGGTACACACCTTTATAATTTTACCACATTCTACATATTGTTATGTTTTCACTACACATACGATGTTTTCAACATATATGCAGAAAACCCGAAGGTTGTATCTGTGTTCTTGAGCAAAGAGCATAAATTGCACACTACACGTTCATGGGAATTTCTTGGATTGCATAGAAATGATATCAACTCAGCTTGGCAAAAGGGAAGGTTTGGTGAAAATACCATCATAGCTAACATCGATTCAGGTGTTTGGCCGGAATCGAAGAGTTTTAGCGACAGAGGAATAGGCCCAATTCCAGCAAAATGGCGTGGAAGAATGCAAATTCCTTATGCACAACAATTAATAAGGAAGCTAATTGGAGCAAGATTTTTCAACAAAGCATATGAACGTGATAACGGCAAACTTCCTCGTTCGCAACAAACAGCACGTGACTTTGTAGGCCACGGTACGCATACACTATCAACAGCATGTGGAAACTTCGTACCAGGTGCAAGCATATTTGGTATTGGCAATGGTACTGTAAAAGGTGGTTCACCAAGAGCTAGAGTTGCAACCTACAAAGTGTGTTGGTCTCAAAGTGCTATTTGCTATAGTGCTGATATATTAGCTGCTATTGAGCAAGCCATTAGTGATGGTGTTGATATAATCTCACTTTCTCTTGGAAGCAGTACTATTACAGATTCTCAAGGAATTTTGAAGGATATGATTTCAATAGGTGCATTTCATGCGCTTGCTAGAAATATTTTATTAGTTGCATCTGCTGGAAATGATGGACCAACCCCTGGAAGTGTTACTAATGTTGCTCCATGGGTATTCACAGTTGCTGCAAGTACAATTGATAGAGACTTCAGCAGTACTATGACCATTGGTAACAAAACTGTCACGGGAGCCAGTCTATTTGTAAACTTGCCACCTAACCAGTCTTTCACTCTAGTGGATTCTACGGATGTTAAATTTACCAATGTGACAAATCGAGATGCACGATTTTGTAGACCAGGAACACTTGATCCTTCTAAAGCAAGTGGAAAAATAGTGGCGTGTGTTCGAGAAGGGGAAATAACTTCGAACACTTTGACATCTGGAGTATTGTTTGGATATCAATATCCAAGAAAAGAATTTTCCATAAGTTCAGTTGCTCAGGGTCAAGAAGCTAAATCGGCAAGAGCAAAGGGAGTGATTTTGAGAAATCAACCAAGAATCAATGGGAGAATACTTCTCTCTGAGCCTCATGTTTTGTCTACTATCAACTATTATGACAAGCATCAATTAACAAGAGGACATAGTATAGGCATAAGTACCACTGATACAATAAAGTCAGTTACTAAAATAAGTCCCTGTTTGGTTACGCGGTGTGAACTGTTAAACGCACGTCTTACCCTTCAAAAGCGATTCCGAGGTGTTTGGTTCTCCACCAACACTCTACCGCCGTCGCACCCTGATGTAACGGCGCCCGGTGTGAACATACTTGCAGCCTATTCATTGTTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCAAGGTTTCCCATTCAATGTAATGCAAGGAACTTCTATGTCTTGCCCTCATGTTGCTGGGACTGCTGGATTAATCAAAACACTTCATCTGAATTGGAGTCCTGCGGCTATTAAATCAGCTATCATGACCACCGCAACCACAAGAGATAACACCAACAAGCCTATAAGTGATGCATTCGAAAACACAACTGCAAATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGACCCAGGACTTGTTTATGACCTAGGGATTAAGGATTACTTGAACTTCTTATGTGCTTCTGGATACAACCAACAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTCATAACATAGATGACTTGAATTATCTTTCAATCACATTACCAAATATTGGTTTAAATGTTGTTAATGTCACTCGTATAGTCACCAATGTTGGGCCACCAAGTACATATTTTGCAAAAGTCCAATTGCCTGGATGTAAAATTGCTGTTGTACCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGAAATTTCAAGTTATTGTGCAAGCAACAAGTATTGAGAAAGTAAAACTGTAA

Protein sequence

>MsG0780039910.01.T01

MEPRIGNKFRLGRKIGTNIQTNEEVAIKLINRVEFVHTKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKFRDSAHQHILYRESKNLTGTARYASMNTHLGIVSRYQLCAIGFCRGFRRGLQFFSSPTSVSQGMCQPCKECRRDENSVVREGAARNLAMLLPLFPNVDKYFKVSLTIFASRQSWRRFLTCDFATNKENAKEAIIYSYNKQINGFAAILEEEEAAQIAKNPKVVSVFLSKEHKLHTTRSWEFLGLSTNDINSAWQKGRFGENTIIANVDTGTHLYNFTTFYILLCFHYTYDVFNIYAENPKVVSVFLSKEHKLHTTRSWEFLGLHRNDINSAWQKGRFGENTIIANIDSGVWPESKSFSDRGIGPIPAKWRGRMQIPYAQQLIRKLIGARFFNKAYERDNGKLPRSQQTARDFVGHGTHTLSTACGNFVPGASIFGIGNGTVKGGSPRARVATYKVCWSQSAICYSADILAAIEQAISDGVDIISLSLGSSTITDSQGILKDMISIGAFHALARNILLVASAGNDGPTPGSVTNVAPWVFTVAASTIDRDFSSTMTIGNKTVTGASLFVNLPPNQSFTLVDSTDVKFTNVTNRDARFCRPGTLDPSKASGKIVACVREGEITSNTLTSGVLFGYQYPRKEFSISSVAQGQEAKSARAKGVILRNQPRINGRILLSEPHVLSTINYYDKHQLTRGHSIGISTTDTIKSVTKISPCLVTRCELLNARLTLQKRFRGVWFSTNTLPPSHPDVTAPGVNILAAYSLFASASNLPTDNRQGFPFNVMQGTSMSCPHVAGTAGLIKTLHLNWSPAAIKSAIMTTATTRDNTNKPISDAFENTTANPFAYGSGHIQPNSAMDPGLVYDLGIKDYLNFLCASGYNQQLISALNFNMTFTCSGTHNIDDLNYLSITLPNIGLNVVNVTRIVTNVGPPSTYFAKVQLPGCKIAVVPSSLNFKKIGEKKKFQVIVQATSIEKVKL*