AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025633.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025633.01.T01 MTR_5g031880 96.585 410 4 3 1 402 107 514 0.0 811
MsG0580025633.01.T01 MTR_8g068510 60.112 356 98 11 58 401 75 398 7.48e-128 374
MsG0580025633.01.T01 MTR_4g127930 74.771 218 43 2 109 314 148 365 8.02e-116 347
MsG0580025633.01.T01 MTR_2g098180 71.730 237 46 6 86 304 133 366 2.08e-114 344
MsG0580025633.01.T01 MTR_7g080460 60.403 298 76 6 94 349 222 519 9.17e-114 348
MsG0580025633.01.T01 MTR_4g065370 71.369 241 43 7 86 304 126 362 1.47e-112 340
MsG0580025633.01.T01 MTR_8g020510 77.202 193 35 2 111 294 239 431 1.01e-103 318
MsG0580025633.01.T01 MTR_1g017400 54.952 313 111 8 11 311 221 515 7.77e-103 318
MsG0580025633.01.T01 MTR_3g103460 74.359 195 41 2 111 296 301 495 3.51e-101 314
MsG0580025633.01.T01 MTR_4g097520 65.021 243 64 4 111 344 301 531 8.18e-101 313
MsG0580025633.01.T01 MTR_5g015070 67.925 212 49 2 116 316 245 448 6.50e-98 302
MsG0580025633.01.T01 MTR_4g130270 66.864 169 45 1 119 276 46 214 1.93e-76 241
MsG0580025633.01.T01 MTR_8g044070 66.867 166 47 1 119 276 54 219 1.01e-73 236
MsG0580025633.01.T01 MTR_7g009410 65.060 166 50 2 119 276 64 229 5.34e-73 233
MsG0580025633.01.T01 MTR_6g011490 64.596 161 49 1 124 276 65 225 2.11e-71 229
MsG0580025633.01.T01 MTR_2g460730 65.882 170 50 1 115 276 42 211 9.96e-71 226
MsG0580025633.01.T01 MTR_4g007770 67.470 166 46 1 119 276 35 200 1.09e-68 220
MsG0580025633.01.T01 MTR_8g044040 65.060 166 50 1 119 276 55 220 1.09e-66 217
MsG0580025633.01.T01 MTR_8g468920 64.497 169 52 1 116 276 65 233 9.36e-66 215
MsG0580025633.01.T01 MTR_7g100590 41.379 261 128 7 28 279 51 295 4.90e-42 154
MsG0580025633.01.T01 MTR_4g094868 53.459 159 68 3 124 279 177 332 9.67e-42 154
MsG0580025633.01.T01 MTR_4g094868 53.459 159 68 3 124 279 177 332 9.83e-42 154
MsG0580025633.01.T01 MTR_5g016810 52.727 165 72 3 124 285 153 314 2.35e-41 153
MsG0580025633.01.T01 MTR_7g091390 50.575 174 70 3 71 236 11 176 3.21e-41 150
MsG0580025633.01.T01 MTR_4g061200 44.292 219 110 5 84 299 96 305 4.00e-41 150
MsG0580025633.01.T01 MTR_2g093060 48.925 186 88 4 97 279 109 290 1.40e-40 150
MsG0580025633.01.T01 MTR_2g093060 48.925 186 88 4 97 279 109 290 1.60e-40 150
MsG0580025633.01.T01 MTR_4g061200 44.292 219 110 5 84 299 96 305 1.62e-40 150
MsG0580025633.01.T01 MTR_5g016810 50.292 171 73 4 124 285 153 320 1.73e-38 145
MsG0580025633.01.T01 MTR_7g061190 53.383 133 61 1 147 279 6 137 2.02e-34 125
MsG0580025633.01.T01 MTR_4g094868 51.748 143 62 2 143 279 35 176 4.57e-34 130
MsG0580025633.01.T01 MTR_4g061200 40.639 219 103 6 84 299 96 290 2.52e-32 125
MsG0580025633.01.T01 MTR_5g031900 74.359 78 15 2 326 402 31 104 3.30e-32 117
MsG0580025633.01.T01 MTR_4g061200 40.639 219 103 6 84 299 96 290 8.32e-32 125
MsG0580025633.01.T01 MTR_2g093060 44.624 186 81 5 97 279 109 275 8.63e-32 125
MsG0580025633.01.T01 MTR_7g091390 61.364 88 29 1 149 236 6 88 1.99e-23 100
MsG0580025633.01.T01 MTR_3g090510 45.872 109 58 1 147 255 160 267 4.69e-19 88.6
MsG0580025633.01.T01 MTR_7g060560 43.119 109 60 2 147 255 153 259 9.19e-16 78.6
MsG0580025633.01.T01 MTR_1g049140 45.000 100 49 3 120 216 134 230 5.55e-14 71.6
MsG0580025633.01.T01 MTR_1g049140 40.870 115 62 3 120 231 134 245 5.89e-14 73.2
MsG0580025633.01.T01 MTR_1g049140 40.870 115 62 3 120 231 134 245 1.81e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025633.01.T01 AT5G10510 55.042 476 123 13 1 402 85 543 5.50e-136 400
MsG0580025633.01.T01 AT5G10510 54.697 479 123 13 1 402 85 546 2.01e-135 399
MsG0580025633.01.T01 AT5G10510 54.697 479 123 13 1 402 85 546 2.01e-135 399
MsG0580025633.01.T01 AT5G10510 54.697 479 123 13 1 402 108 569 5.36e-135 398
MsG0580025633.01.T01 AT5G10510 54.697 479 123 13 1 402 123 584 5.73e-135 399
MsG0580025633.01.T01 AT5G10510 54.697 479 123 13 1 402 123 584 5.73e-135 399
MsG0580025633.01.T01 AT5G10510 52.505 499 123 13 1 402 123 604 8.06e-132 391
MsG0580025633.01.T01 AT5G65510 55.847 419 103 11 21 402 67 440 5.40e-131 384
MsG0580025633.01.T01 AT5G65510 55.847 419 103 11 21 402 125 498 1.10e-130 385
MsG0580025633.01.T01 AT5G65510 55.847 419 103 11 21 402 125 498 1.10e-130 385
MsG0580025633.01.T01 AT1G51190 66.415 265 66 6 60 304 125 386 1.06e-115 349
MsG0580025633.01.T01 AT3G20840 66.148 257 70 5 65 304 121 377 6.56e-115 347
MsG0580025633.01.T01 AT5G57390 61.071 280 80 6 101 364 63 329 4.76e-113 338
MsG0580025633.01.T01 AT5G57390 76.098 205 38 1 101 294 181 385 5.92e-112 339
MsG0580025633.01.T01 AT5G17430 65.116 258 76 3 96 341 123 378 7.21e-112 338
MsG0580025633.01.T01 AT5G17430 65.116 258 76 3 96 341 185 440 2.10e-111 338
MsG0580025633.01.T01 AT1G72570 71.500 200 46 1 100 288 200 399 9.01e-101 306
MsG0580025633.01.T01 AT4G37750 57.993 269 100 2 80 337 240 506 4.64e-100 308
MsG0580025633.01.T01 AT5G65510 58.893 253 65 5 21 246 67 307 5.08e-90 275
MsG0580025633.01.T01 AT5G65510 35.644 101 50 2 187 279 153 246 1.85e-11 65.1
MsG0580025633.01.T01 AT3G54320 59.113 203 68 4 119 307 61 262 1.16e-67 221
MsG0580025633.01.T01 AT3G54320 59.113 203 68 4 119 307 61 262 1.45e-67 221
MsG0580025633.01.T01 AT1G79700 64.497 169 49 1 119 276 48 216 1.01e-57 191
MsG0580025633.01.T01 AT1G16060 59.358 187 65 1 101 276 36 222 2.29e-57 191
MsG0580025633.01.T01 AT3G54320 59.877 162 61 2 149 307 36 196 5.60e-53 181
MsG0580025633.01.T01 AT3G54320 59.877 162 61 2 149 307 36 196 5.60e-53 181
MsG0580025633.01.T01 AT1G79700 60.355 169 46 2 119 276 48 206 1.19e-49 170
MsG0580025633.01.T01 AT4G36920 47.525 202 100 3 87 285 95 293 9.45e-44 158
MsG0580025633.01.T01 AT4G36920 47.525 202 100 3 87 285 95 293 9.45e-44 158
MsG0580025633.01.T01 AT1G79700 67.969 128 41 0 149 276 13 140 2.42e-43 151
MsG0580025633.01.T01 AT1G79700 67.969 128 41 0 149 276 7 134 3.02e-43 151
MsG0580025633.01.T01 AT1G16060 67.188 128 42 0 149 276 25 152 8.67e-42 149
MsG0580025633.01.T01 AT5G67180 50.610 164 75 3 124 284 97 257 1.25e-40 146
MsG0580025633.01.T01 AT5G67180 50.610 164 75 3 124 284 97 257 1.93e-40 145
MsG0580025633.01.T01 AT5G67180 50.610 164 75 3 124 284 97 257 4.94e-40 146
MsG0580025633.01.T01 AT2G28550 51.572 159 71 3 124 279 154 309 1.07e-39 147
MsG0580025633.01.T01 AT2G41710 48.108 185 59 5 110 266 57 232 3.41e-39 145
MsG0580025633.01.T01 AT2G41710 48.108 185 59 5 110 266 57 232 5.25e-39 145
MsG0580025633.01.T01 AT2G41710 46.842 190 59 6 110 266 57 237 7.67e-37 139
MsG0580025633.01.T01 AT2G41710 40.455 220 59 6 110 266 57 267 1.74e-32 127
MsG0580025633.01.T01 AT2G28550 40.107 187 105 4 124 307 154 336 2.29e-32 125
MsG0580025633.01.T01 AT3G54320 57.377 122 48 2 189 307 1 121 4.59e-32 123
MsG0580025633.01.T01 AT1G16060 71.591 88 25 0 189 276 1 88 3.04e-31 119
MsG0580025633.01.T01 AT1G16060 71.591 88 25 0 189 276 1 88 3.04e-31 119
MsG0580025633.01.T01 AT1G16060 71.591 88 25 0 189 276 1 88 3.04e-31 119
MsG0580025633.01.T01 AT1G16060 71.591 88 25 0 189 276 1 88 3.04e-31 119
MsG0580025633.01.T01 AT2G28550 42.021 188 77 5 124 297 154 323 4.46e-31 124
MsG0580025633.01.T01 AT5G67180 49.635 137 63 3 124 257 97 230 6.36e-31 119
MsG0580025633.01.T01 AT2G28550 49.153 118 54 3 124 238 154 268 2.37e-26 107
MsG0580025633.01.T01 AT2G28550 49.153 118 54 3 124 238 154 268 2.37e-26 107
MsG0580025633.01.T01 AT2G39250 47.917 96 45 2 124 216 109 202 4.01e-23 97.4
MsG0580025633.01.T01 AT2G28550 45.802 131 55 2 149 279 14 128 1.08e-22 97.4
MsG0580025633.01.T01 AT2G39250 47.917 96 45 2 124 216 109 202 1.55e-22 97.8
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 1.47e-19 90.9
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 1.53e-19 90.9
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 1.87e-19 90.5
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 3.64e-19 89.0
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 3.64e-19 89.0
MsG0580025633.01.T01 AT5G60120 39.103 156 74 5 120 272 157 294 3.64e-19 89.0
MsG0580025633.01.T01 AT3G54990 47.959 98 46 2 124 218 123 218 2.96e-18 84.0
MsG0580025633.01.T01 AT3G54990 47.959 98 46 2 124 218 123 218 9.56e-18 84.3
MsG0580025633.01.T01 AT1G16060 74.138 58 15 0 219 276 9 66 1.18e-16 78.2
MsG0580025633.01.T01 AT1G36060 45.000 80 43 1 197 276 125 203 5.04e-11 63.9

Find 132 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGGCTGAGTTCTATTTA+TGG 0.191348 5:-21522765 MsG0580025633.01.T01:CDS
GGCTCTGAAGTTGATGATTC+TGG 0.212206 5:-21526589 MsG0580025633.01.T01:CDS
ATTTGCGCCTCGGAACTTTA+TGG 0.216723 5:+21523158 None:intergenic
GTTGGTGTTGGTGCTGGTGC+TGG 0.220856 5:+21526659 None:intergenic
AAGAAGATTGTTGATACTTT+TGG 0.222886 5:-21526367 MsG0580025633.01.T01:CDS
CACGGTAAATTGAAGTTCTT+TGG 0.247591 5:+21526344 None:intergenic
ACCGCTGCTGCGGCAGCGGT+GGG 0.290599 5:-21526475 MsG0580025633.01.T01:CDS
GTTGATGATTCTGGTTCAAT+AGG 0.295762 5:-21526580 MsG0580025633.01.T01:CDS
CGCTGCTGCGGCAGCGGTGG+GGG 0.299820 5:-21526473 MsG0580025633.01.T01:CDS
CAACACCACCAGGATCTTAC+TGG 0.305721 5:-21526640 MsG0580025633.01.T01:CDS
TTTGGCTGCTCTAAAGTATT+GGG 0.306366 5:-21524245 MsG0580025633.01.T01:CDS
GAAGATATGAAGCCCATCTA+TGG 0.317062 5:-21525782 MsG0580025633.01.T01:CDS
GCGAGAATTGGCCGTGTTGC+CGG 0.321909 5:-21523366 MsG0580025633.01.T01:CDS
TACAGCTGTTATCCCATAGA+TGG 0.324143 5:+21525769 None:intergenic
TGACAAACTGTTACTCATAA+TGG 0.326908 5:-21527084 MsG0580025633.01.T01:intron
AGTCAGCAAAGCAAGAAATT+AGG 0.331429 5:+21522696 None:intergenic
TTCCAATTATGCAAAAGAAT+TGG 0.341907 5:-21523681 MsG0580025633.01.T01:CDS
CGTTTAGCTGCCCCGCCAAC+TGG 0.345030 5:+21523075 None:intergenic
CACCGCTGCTGCGGCAGCGG+TGG 0.352088 5:-21526476 MsG0580025633.01.T01:CDS
ATTGACTTGAAGTAGTGTTT+AGG 0.352200 5:-21522729 MsG0580025633.01.T01:exon
GACTTGTATCTCGGAACATT+TGG 0.362363 5:-21523336 MsG0580025633.01.T01:intron
CACCTAAAATCTTCTAGCTT+TGG 0.363531 5:+21526761 None:intergenic
TTGTTCTTGTTCTTCTGCTT+TGG 0.368361 5:+21526832 None:intergenic
TCAAGTCAATAGGACTGATT+TGG 0.370990 5:+21522742 None:intergenic
CTGATTCTAGAGAACGCTTC+AGG 0.377598 5:+21523052 None:intergenic
TTGGTGTTGGTGCTGGTGCT+GGG 0.377768 5:+21526660 None:intergenic
CCTTGTGACACCCCGGTAGA+TGG 0.387528 5:+21523499 None:intergenic
CTCCACCGCTGCTGCGGCAG+CGG 0.387857 5:-21526479 MsG0580025633.01.T01:CDS
GAGATACAAGTCTTTGTTCC+CGG 0.390452 5:+21523347 None:intergenic
TTCCTGCAGGCATCACCAAC+AGG 0.398212 5:-21523400 MsG0580025633.01.T01:intron
GTTGGTGCTGGTGCTGGGAG+TGG 0.414979 5:+21526665 None:intergenic
GCTGCATGTGGGAATGAGTT+TGG 0.416652 5:-21526544 MsG0580025633.01.T01:CDS
GGTAGGTGGCAAGCGAGAAT+TGG 0.417872 5:-21523378 MsG0580025633.01.T01:CDS
TCTGGTTCAATAGGGAAATC+AGG 0.420422 5:-21526571 MsG0580025633.01.T01:CDS
GGCCGCAAGATCCTATGATT+TGG 0.422462 5:-21524263 MsG0580025633.01.T01:CDS
GGTGGTGTTGGTGTTGGTGC+TGG 0.423875 5:+21526653 None:intergenic
CAGCAACAACATCAACTTCT+CGG 0.424028 5:-21522950 MsG0580025633.01.T01:CDS
ATTTGGCTGCTCTAAAGTAT+TGG 0.427354 5:-21524246 MsG0580025633.01.T01:CDS
TATGGGATAACAGCTGTAGA+AGG 0.428845 5:-21525764 MsG0580025633.01.T01:CDS
CACCGCTGCCGCAGCAGCGG+TGG 0.431278 5:+21526477 None:intergenic
CTAAAATCTTCTAGCTTTGG+TGG 0.436181 5:+21526764 None:intergenic
AAACACTACTTCAAGTCAAT+AGG 0.436256 5:+21522732 None:intergenic
GTTGTTGCTGCTGCTGCTGT+TGG 0.444214 5:+21522963 None:intergenic
CCCCACCGCTGCCGCAGCAG+CGG 0.444418 5:+21526474 None:intergenic
CGAGAATTGGCCGTGTTGCC+GGG 0.446110 5:-21523365 MsG0580025633.01.T01:CDS
CTTTAGAGCAGCCAAATCAT+AGG 0.447422 5:+21524252 None:intergenic
AGAACAATCAATCTGGTTTG+TGG 0.454287 5:-21526816 MsG0580025633.01.T01:five_prime_UTR
CCGCTGCTGCGGCAGCGGTG+GGG 0.462790 5:-21526474 MsG0580025633.01.T01:CDS
CATTGGTTGCTGATGTTGAA+TGG 0.463694 5:+21522927 None:intergenic
ATCATCATCACTACTTTGGT+GGG 0.463957 5:-21526690 MsG0580025633.01.T01:CDS
TTGATGATTCTGGTTCAATA+GGG 0.466762 5:-21526579 MsG0580025633.01.T01:CDS
CAAGAGGAGCTTCCATCTAC+CGG 0.470693 5:-21523511 MsG0580025633.01.T01:CDS
CACCCATGGAAATGCTCAGT+TGG 0.474046 5:-21527170 MsG0580025633.01.T01:five_prime_UTR
AGAGCTCTCTTCCAGTTGGC+GGG 0.475251 5:-21523086 MsG0580025633.01.T01:CDS
ATGTTTGCAGCACTTTGTTG+AGG 0.477979 5:+21522988 None:intergenic
TTTCATGCTAGTACCAATGA+TGG 0.480177 5:-21522835 MsG0580025633.01.T01:CDS
GCACCAACACCAACACCACC+AGG 0.481866 5:-21526650 MsG0580025633.01.T01:CDS
AAGAACAAGAACAATCAATC+TGG 0.483167 5:-21526823 MsG0580025633.01.T01:five_prime_UTR
TGTTTGCAGCACTTTGTTGA+GGG 0.486036 5:+21522989 None:intergenic
TATGATCATCATCACTACTT+TGG 0.486383 5:-21526694 MsG0580025633.01.T01:CDS
TGATTCTGCAGCTCCATCAT+TGG 0.490937 5:+21522822 None:intergenic
TGGATATGACAAAGAAGAAA+AGG 0.490955 5:-21524284 MsG0580025633.01.T01:CDS
TTGTCACTGCATTTGCGCCT+CGG 0.493838 5:+21523148 None:intergenic
CAATTTACCGTGGTGTCACT+AGG 0.494957 5:-21526333 MsG0580025633.01.T01:intron
GCTGCAGAATCAGCAGCAAA+TGG 0.504223 5:-21522811 MsG0580025633.01.T01:CDS
GATCCTGGTGGTGTTGGTGT+TGG 0.509940 5:+21526647 None:intergenic
TTGGCTGCTCTAAAGTATTG+GGG 0.511428 5:-21524244 MsG0580025633.01.T01:CDS
GAACCAACTGAGCATTTCCA+TGG 0.511829 5:+21527167 None:intergenic
TGGTACTAGCATGAAAATGC+TGG 0.516205 5:+21522842 None:intergenic
TGATGAGAGGAGTGTAGTAA+CGG 0.518752 5:+21527127 None:intergenic
GATCATCATCACTACTTTGG+TGG 0.521100 5:-21526691 MsG0580025633.01.T01:CDS
AGTGACTCTTACAGGGAAGT+TGG 0.524758 5:+21524207 None:intergenic
TGCTTACTCCACCGCTGCTG+CGG 0.529248 5:-21526485 MsG0580025633.01.T01:CDS
ATTATACTAGGGTGGGGAAA+CGG 0.529987 5:-21526857 MsG0580025633.01.T01:intron
CTCAGCCGATGTTGGTGGCA+TGG 0.530259 5:+21522777 None:intergenic
AACTGAAGAGGAAGCTGCAG+AGG 0.531137 5:-21523196 MsG0580025633.01.T01:CDS
CTTGAAAACCAGTAAGATCC+TGG 0.531357 5:+21526632 None:intergenic
TCGCTTGCCACCTACCCTGT+TGG 0.531381 5:+21523385 None:intergenic
AAGAGCTCTCTTCCAGTTGG+CGG 0.536065 5:-21523087 MsG0580025633.01.T01:CDS
CTAGCTTTGGTGGTGGAGTG+TGG 0.537501 5:+21526774 None:intergenic
AATTCATTGCTTCATTGAGA+AGG 0.538177 5:-21523631 MsG0580025633.01.T01:intron
CCATCTACCGGGGTGTCACA+AGG 0.539236 5:-21523499 MsG0580025633.01.T01:intron
GAGTCATACGGAATACCATA+GGG 0.544015 5:+21522895 None:intergenic
TAGCATGAAAATGCTGGAAG+AGG 0.547125 5:+21522848 None:intergenic
CGAGTCATACGGAATACCAT+AGG 0.549420 5:+21522894 None:intergenic
CCAATGGCTTCAATCCCCTA+TGG 0.549466 5:-21522910 MsG0580025633.01.T01:CDS
TAGAACTCAGCCGATGTTGG+TGG 0.553420 5:+21522772 None:intergenic
AAGAGGAGCTTCCATCTACC+GGG 0.554347 5:-21523510 MsG0580025633.01.T01:CDS
AAGATATGAAGCCCATCTAT+GGG 0.555486 5:-21525781 MsG0580025633.01.T01:CDS
AAATCTTCTAGCTTTGGTGG+TGG 0.558851 5:+21526767 None:intergenic
CCATAGGGGATTGAAGCCAT+TGG 0.565801 5:+21522910 None:intergenic
TGGCTGCTCTAAAGTATTGG+GGG 0.567440 5:-21524243 MsG0580025633.01.T01:CDS
AAATAGAACTCAGCCGATGT+TGG 0.570966 5:+21522769 None:intergenic
GCTAATGGAACTCTGTCGCT+CGG 0.572989 5:-21526451 MsG0580025633.01.T01:CDS
CATGATTACAGCAACTGAAG+AGG 0.581404 5:-21523208 MsG0580025633.01.T01:intron
AAGAGTAGTGGCTTCTCAAG+AGG 0.582094 5:-21523527 MsG0580025633.01.T01:CDS
CAATGCCATGCCACCAACAT+CGG 0.582869 5:-21522782 MsG0580025633.01.T01:CDS
ACAGCTGTTATCCCATAGAT+GGG 0.584544 5:+21525770 None:intergenic
AGGGAAGTTGGTAGTAGCAG+TGG 0.587800 5:+21524219 None:intergenic
GGGAACAAAGACTTGTATCT+CGG 0.588471 5:-21523345 MsG0580025633.01.T01:CDS
CTTTATGGCCGCAATGTCGT+AGG 0.589259 5:+21523173 None:intergenic
AAATCAGGACAAGCTGCATG+TGG 0.591247 5:-21526556 MsG0580025633.01.T01:CDS
GGCATCACCAACAGGGTAGG+TGG 0.595697 5:-21523392 MsG0580025633.01.T01:CDS
TATTCCGTATGACTCGAATA+CGG 0.597263 5:-21522887 MsG0580025633.01.T01:CDS
CAGTAAGATCCTGGTGGTGT+TGG 0.600392 5:+21526641 None:intergenic
ATGGGATAACAGCTGTAGAA+GGG 0.605627 5:-21525763 MsG0580025633.01.T01:CDS
ATGAAGAGCTCTCTTCCAGT+TGG 0.609750 5:-21523090 MsG0580025633.01.T01:CDS
TGCAGAGGCCTACGACATTG+CGG 0.609893 5:-21523181 MsG0580025633.01.T01:CDS
AGCCAAATCATAGGATCTTG+CGG 0.610099 5:+21524261 None:intergenic
TCTTCTTGCAGGAAGAGTAG+TGG 0.611461 5:-21523539 MsG0580025633.01.T01:intron
GATAACAGCTGTAGAAGGGA+AGG 0.621863 5:-21525759 MsG0580025633.01.T01:intron
CGGTGTTGCGCAGAGTTCCG+AGG 0.623641 5:-21526431 MsG0580025633.01.T01:CDS
GAGCTCTCTTCCAGTTGGCG+GGG 0.623879 5:-21523085 MsG0580025633.01.T01:CDS
CATTCAACATCAGCAACCAA+TGG 0.631785 5:-21522926 MsG0580025633.01.T01:CDS
AACCAACTGAGCATTTCCAT+GGG 0.632772 5:+21527168 None:intergenic
GCAGGCATCACCAACAGGGT+AGG 0.639876 5:-21523395 MsG0580025633.01.T01:intron
TTATGAGTAACAGTTTGTCA+AGG 0.642408 5:+21527087 None:intergenic
GGGAAGTTGGTAGTAGCAGT+GGG 0.646966 5:+21524220 None:intergenic
TCCTGCAGGCATCACCAACA+GGG 0.649115 5:-21523399 MsG0580025633.01.T01:intron
AATCAGGACAAGCTGCATGT+GGG 0.650674 5:-21526555 MsG0580025633.01.T01:CDS
GCAGAATCAGCAGCAAATGG+AGG 0.655444 5:-21522808 MsG0580025633.01.T01:CDS
TAAGCCGTATTCGAGTCATA+CGG 0.655944 5:+21522883 None:intergenic
AGTCTTTGTTCCCGGCAACA+CGG 0.656378 5:+21523355 None:intergenic
TTACAAACCTTGTGACACCC+CGG 0.662260 5:+21523492 None:intergenic
TCATCATCACTACTTTGGTG+GGG 0.667284 5:-21526689 MsG0580025633.01.T01:CDS
CAAAGAACTTCAATTTACCG+TGG 0.676500 5:-21526343 MsG0580025633.01.T01:CDS
ATTGCGGCCATAAAGTTCCG+AGG 0.680301 5:-21523165 MsG0580025633.01.T01:CDS
TATTATACCTAGTGACACCA+CGG 0.692652 5:+21526326 None:intergenic
TGAGATGAACAGATATGACG+TGG 0.711855 5:-21523121 MsG0580025633.01.T01:CDS
AGAGGAGCTTCCATCTACCG+GGG 0.715037 5:-21523509 MsG0580025633.01.T01:CDS
AGTCATACGGAATACCATAG+GGG 0.731791 5:+21522896 None:intergenic
GAAAACCAGTAAGATCCTGG+TGG 0.756363 5:+21526635 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATATAATTTTTTA+TGG - Chr5:21524087-21524106 MsG0580025633.01.T01:intron 0.0%
!! AAAAACAATAACAATATATA+AGG + Chr5:21526067-21526086 None:intergenic 10.0%
!!! AACATACTTTTATTTTATTT+TGG - Chr5:21525192-21525211 MsG0580025633.01.T01:intron 10.0%
!!! AATTTTATTTCTTAATCTAA+CGG + Chr5:21525888-21525907 None:intergenic 10.0%
!!! GTATTTTTTACAATTTTAAT+AGG + Chr5:21526194-21526213 None:intergenic 10.0%
!!! TTAGATTATAAAGTAATTTT+TGG - Chr5:21525228-21525247 MsG0580025633.01.T01:intron 10.0%
!!! TTATTTATGATTTTAATTTG+GGG - Chr5:21523957-21523976 MsG0580025633.01.T01:intron 10.0%
!! GTAAATTAATCTTAATTCAA+TGG + Chr5:21525660-21525679 None:intergenic 15.0%
!! TAATTTACAATTCATATTCA+TGG - Chr5:21525672-21525691 MsG0580025633.01.T01:intron 15.0%
!! TAGAAAAAAAATATTCATGT+AGG + Chr5:21522852-21522871 None:intergenic 15.0%
!!! AAATCCATTTTGAAATTATA+AGG - Chr5:21525962-21525981 MsG0580025633.01.T01:intron 15.0%
!!! ATAATATATGCTTTTTCATT+TGG - Chr5:21524297-21524316 MsG0580025633.01.T01:intron 15.0%
!!! TAATTATTTTTTGTATCCAA+AGG - Chr5:21523621-21523640 MsG0580025633.01.T01:intron 15.0%
!!! TTCTTTGTTTAACATTATTT+TGG - Chr5:21526362-21526381 MsG0580025633.01.T01:CDS 15.0%
!! AAAAAAATATTCATGTAGGT+CGG + Chr5:21522848-21522867 None:intergenic 20.0%
!! AAAAAATACTTATCATGATC+AGG - Chr5:21526205-21526224 MsG0580025633.01.T01:intron 20.0%
!! AATGTACAAAGAAAAATCAT+AGG - Chr5:21525617-21525636 MsG0580025633.01.T01:intron 20.0%
!! ACAAAGACATTTGATATATT+AGG + Chr5:21522759-21522778 None:intergenic 20.0%
!! ACAAATAAAAAAAGATCCTT+TGG + Chr5:21523640-21523659 None:intergenic 20.0%
!! ACAATACTTCTAATACTTTA+AGG + Chr5:21526487-21526506 None:intergenic 20.0%
!! AGATAGAGAGATAAAATTAA+AGG - Chr5:21525134-21525153 MsG0580025633.01.T01:intron 20.0%
!! CAAAGACATTTGATATATTA+GGG + Chr5:21522758-21522777 None:intergenic 20.0%
!! CAATCCTTATAATTTCAAAA+TGG + Chr5:21525969-21525988 None:intergenic 20.0%
!! GATAGAGAGATAAAATTAAA+GGG - Chr5:21525135-21525154 MsG0580025633.01.T01:intron 20.0%
!! GTAAGAATTGAGATTATATA+TGG - Chr5:21526015-21526034 MsG0580025633.01.T01:intron 20.0%
!! TAATCTCAATTCTTACTTAA+TGG + Chr5:21526011-21526030 None:intergenic 20.0%
!! TCATGTTAACAAAATACTAT+TGG + Chr5:21524943-21524962 None:intergenic 20.0%
!!! AAAATTTGTCTATTTCTCAT+TGG + Chr5:21524882-21524901 None:intergenic 20.0%
!!! AGTATTGTCTTAAATTTTGT+TGG - Chr5:21526499-21526518 MsG0580025633.01.T01:CDS 20.0%
!!! ATTTATTGACTATGTTATGT+TGG - Chr5:21523814-21523833 MsG0580025633.01.T01:intron 20.0%
!!! ATTTTCTACAATCAACTTTA+CGG + Chr5:21525946-21525965 None:intergenic 20.0%
!!! GTGTTACTAGTAAAATTAAA+GGG - Chr5:21524546-21524565 MsG0580025633.01.T01:intron 20.0%
!!! TATGATGATGATATGATTAA+CGG - Chr5:21527177-21527196 MsG0580025633.01.T01:five_prime_UTR 20.0%
!!! TATGATTTTTCTTTGTACAT+TGG + Chr5:21525618-21525637 None:intergenic 20.0%
!!! TCTCATTGTTTTTTTTTGAA+AGG - Chr5:21523535-21523554 MsG0580025633.01.T01:intron 20.0%
!!! TGTGTTACTAGTAAAATTAA+AGG - Chr5:21524545-21524564 MsG0580025633.01.T01:intron 20.0%
!!! TGTTTATATGTTTTAGAGAT+AGG - Chr5:21525438-21525457 MsG0580025633.01.T01:intron 20.0%
!!! TGTTTTTTTTCCTATATCTT+AGG - Chr5:21526080-21526099 MsG0580025633.01.T01:intron 20.0%
!!! TTGTTTTGACTATTATACTA+GGG - Chr5:21522917-21522936 MsG0580025633.01.T01:CDS 20.0%
!!! TTTGTTTTGACTATTATACT+AGG - Chr5:21522916-21522935 MsG0580025633.01.T01:CDS 20.0%
! AAATTTGACTATATGCCATA+AGG - Chr5:21525256-21525275 MsG0580025633.01.T01:intron 25.0%
! AATATCAAATATCACCCTTA+TGG + Chr5:21525274-21525293 None:intergenic 25.0%
! AATTAAACAGTGTTTGATTC+TGG - Chr5:21524135-21524154 MsG0580025633.01.T01:intron 25.0%
! AATTTGACTATATGCCATAA+GGG - Chr5:21525257-21525276 MsG0580025633.01.T01:intron 25.0%
! ATAGTACTATGATTGATTGA+TGG - Chr5:21524227-21524246 MsG0580025633.01.T01:CDS 25.0%
! ATTAAACAGTGTTTGATTCT+GGG - Chr5:21524136-21524155 MsG0580025633.01.T01:intron 25.0%
! CACAGTTATGAATATTAGTA+CGG + Chr5:21524515-21524534 None:intergenic 25.0%
! CAGATATGTTTATTTGACTA+TGG - Chr5:21524912-21524931 MsG0580025633.01.T01:intron 25.0%
! TAATTGGAAACCTAAGATAT+AGG + Chr5:21526093-21526112 None:intergenic 25.0%
! TATATAAGGTAAGTCTTGAA+AGG + Chr5:21526053-21526072 None:intergenic 25.0%
! TCAAGTTCATAGATTTGATT+TGG - Chr5:21523854-21523873 MsG0580025633.01.T01:intron 25.0%
! TGAAAGAAATATGCTTTACT+TGG - Chr5:21525757-21525776 MsG0580025633.01.T01:intron 25.0%
! TGTAACATTGTAAATTGTCA+TGG - Chr5:21525465-21525484 MsG0580025633.01.T01:intron 25.0%
! TTCCAATTATGCAAAAGAAT+TGG - Chr5:21526104-21526123 MsG0580025633.01.T01:intron 25.0%
! TTGTTTGATTGAAAATCCAA+AGG - Chr5:21523656-21523675 MsG0580025633.01.T01:CDS 25.0%
!! AAGAAGATTGTTGATACTTT+TGG - Chr5:21523418-21523437 MsG0580025633.01.T01:intron 25.0%
!! GTCTTAAATTTTGTTGGAAA+AGG - Chr5:21526505-21526524 MsG0580025633.01.T01:CDS 25.0%
!! TACTTTAACTTACACTTATG+AGG - Chr5:21524673-21524692 MsG0580025633.01.T01:intron 25.0%
!! TCAATTCTTACTTAATGGAT+AGG + Chr5:21526006-21526025 None:intergenic 25.0%
!! TTCCAATTCTTTTGCATAAT+TGG + Chr5:21526109-21526128 None:intergenic 25.0%
AAACACATTATGTTCACACA+TGG + Chr5:21525733-21525752 None:intergenic 30.0%
AAACACTACTTCAAGTCAAT+AGG + Chr5:21527056-21527075 None:intergenic 30.0%
AAGAACAAGAACAATCAATC+TGG - Chr5:21522962-21522981 MsG0580025633.01.T01:CDS 30.0%
AATTCATTGCTTCATTGAGA+AGG - Chr5:21526154-21526173 MsG0580025633.01.T01:intron 30.0%
ACAAATTTCAATACAGTGAG+TGG + Chr5:21524654-21524673 None:intergenic 30.0%
ACTTGGTACACAAAATATTG+AGG - Chr5:21525774-21525793 MsG0580025633.01.T01:CDS 30.0%
AGGGTGATATTTGATATTCT+TGG - Chr5:21525276-21525295 MsG0580025633.01.T01:intron 30.0%
AGTGTACAGATTGTATTACA+CGG - Chr5:21526339-21526358 MsG0580025633.01.T01:CDS 30.0%
ATGAGTCCTTGTAGTAAAAA+AGG - Chr5:21525039-21525058 MsG0580025633.01.T01:intron 30.0%
ATGTGTGAACATAATGTGTT+TGG - Chr5:21525732-21525751 MsG0580025633.01.T01:intron 30.0%
CATGATCAGGTACTAAAATT+TGG - Chr5:21526218-21526237 MsG0580025633.01.T01:intron 30.0%
GATAGAAAACTACTGTACAT+TGG + Chr5:21525096-21525115 None:intergenic 30.0%
TAACTGTAGATGAGTCAAAA+AGG + Chr5:21525345-21525364 None:intergenic 30.0%
TACACAAAATATTGAGGCTA+AGG - Chr5:21525780-21525799 MsG0580025633.01.T01:CDS 30.0%
TATGATCATCATCACTACTT+TGG - Chr5:21523091-21523110 MsG0580025633.01.T01:CDS 30.0%
TCTGTTCAGATAGTTATGAA+GGG - Chr5:21524426-21524445 MsG0580025633.01.T01:intron 30.0%
TGACAAACTGTTACTCATAA+TGG - Chr5:21522701-21522720 MsG0580025633.01.T01:three_prime_UTR 30.0%
TGACTCATCTACAGTTATTT+GGG - Chr5:21525348-21525367 MsG0580025633.01.T01:intron 30.0%
TGAGTCCTTGTAGTAAAAAA+GGG - Chr5:21525040-21525059 MsG0580025633.01.T01:intron 30.0%
TGGATATGACAAAGAAGAAA+AGG - Chr5:21525501-21525520 MsG0580025633.01.T01:intron 30.0%
TGGTATCTTAATAAGAGAAC+TGG - Chr5:21525817-21525836 MsG0580025633.01.T01:intron 30.0%
TGTCAAAGAAAGACCAAAAA+AGG - Chr5:21524834-21524853 MsG0580025633.01.T01:intron 30.0%
TTAGTACGGAATTAATCACT+TGG + Chr5:21524501-21524520 None:intergenic 30.0%
TTATGAGTAACAGTTTGTCA+AGG + Chr5:21522701-21522720 None:intergenic 30.0%
TTGACTCATCTACAGTTATT+TGG - Chr5:21525347-21525366 MsG0580025633.01.T01:intron 30.0%
TTTGACTATTATACTAGGGT+GGG - Chr5:21522921-21522940 MsG0580025633.01.T01:CDS 30.0%
! ACTATGATTGATTGATGGTA+TGG - Chr5:21524232-21524251 MsG0580025633.01.T01:CDS 30.0%
!! ATTGACTTGAAGTAGTGTTT+AGG - Chr5:21527056-21527075 MsG0580025633.01.T01:intron 30.0%
!! TAGCTATTGATTTACTCAGT+TGG - Chr5:21523728-21523747 MsG0580025633.01.T01:intron 30.0%
!! TTGATGATTCTGGTTCAATA+GGG - Chr5:21523206-21523225 MsG0580025633.01.T01:intron 30.0%
!! TTTTGACTATTATACTAGGG+TGG - Chr5:21522920-21522939 MsG0580025633.01.T01:CDS 30.0%
!!! GAACATAGAGAAACCTTTTT+TGG + Chr5:21524850-21524869 None:intergenic 30.0%
!!! TTTTAATTTGGGGATTTTGC+AGG - Chr5:21523967-21523986 MsG0580025633.01.T01:intron 30.0%
AACAAAGAAGTGACTCTTAC+AGG + Chr5:21525589-21525608 None:intergenic 35.0%
AACGTTCACTGTTACATGAA+AGG - Chr5:21524702-21524721 MsG0580025633.01.T01:intron 35.0%
AAGATATGAAGCCCATCTAT+GGG - Chr5:21524004-21524023 MsG0580025633.01.T01:intron 35.0%
ACAAAATATTGAGGCTAAGG+TGG - Chr5:21525783-21525802 MsG0580025633.01.T01:CDS 35.0%
ACAAAGAAGTGACTCTTACA+GGG + Chr5:21525588-21525607 None:intergenic 35.0%
AGTCAGCAAAGCAAGAAATT+AGG + Chr5:21527092-21527111 None:intergenic 35.0%
AGTCCTTGTAGTAAAAAAGG+GGG - Chr5:21525042-21525061 MsG0580025633.01.T01:intron 35.0%
ATAGTGACACAAAGATCCTT+TGG + Chr5:21523675-21523694 None:intergenic 35.0%
ATCATCATCACTACTTTGGT+GGG - Chr5:21523095-21523114 MsG0580025633.01.T01:CDS 35.0%
ATTTGGTTATCTCTTCTTGC+AGG - Chr5:21526235-21526254 MsG0580025633.01.T01:intron 35.0%
CAAAGAACTTCAATTTACCG+TGG - Chr5:21523442-21523461 MsG0580025633.01.T01:intron 35.0%
CACGGTAAATTGAAGTTCTT+TGG + Chr5:21523444-21523463 None:intergenic 35.0%
CATAGTACTATAAGTAACCC+AGG + Chr5:21524218-21524237 None:intergenic 35.0%
CATTGTAAATTGTCATGGCA+TGG - Chr5:21525470-21525489 MsG0580025633.01.T01:intron 35.0%
GAGTCCTTGTAGTAAAAAAG+GGG - Chr5:21525041-21525060 MsG0580025633.01.T01:intron 35.0%
GTCTGTTCAGATAGTTATGA+AGG - Chr5:21524425-21524444 MsG0580025633.01.T01:intron 35.0%
TACTTAACGCCGTTTAACAA+CGG - Chr5:21522802-21522821 MsG0580025633.01.T01:CDS 35.0%
TATTATACCTAGTGACACCA+CGG + Chr5:21523462-21523481 None:intergenic 35.0%
TATTCCGTATGACTCGAATA+CGG - Chr5:21526898-21526917 MsG0580025633.01.T01:intron 35.0%
TCAAGTCAATAGGACTGATT+TGG + Chr5:21527046-21527065 None:intergenic 35.0%
TTGACTATTATACTAGGGTG+GGG - Chr5:21522922-21522941 MsG0580025633.01.T01:CDS 35.0%
TTGTTCTTGTTCTTCTGCTT+TGG + Chr5:21522956-21522975 None:intergenic 35.0%
TTTCATGCTAGTACCAATGA+TGG - Chr5:21526950-21526969 MsG0580025633.01.T01:intron 35.0%
! AGAACAATCAATCTGGTTTG+TGG - Chr5:21522969-21522988 MsG0580025633.01.T01:CDS 35.0%
! AGCAACAATAGCATTTTCCT+CGG + Chr5:21523374-21523393 None:intergenic 35.0%
! AGGATCTTTGTGTCACTATT+TGG - Chr5:21523676-21523695 MsG0580025633.01.T01:CDS 35.0%
! CACCAAAGCTAGAAGATTTT+AGG - Chr5:21523022-21523041 MsG0580025633.01.T01:CDS 35.0%
! TCTTACTTAATGGATAGGCA+TGG + Chr5:21526001-21526020 None:intergenic 35.0%
!! ATCTTTATAGCTTGCTACGT+AGG + Chr5:21525118-21525137 None:intergenic 35.0%
!! ATTTGGCTGCTCTAAAGTAT+TGG - Chr5:21525539-21525558 MsG0580025633.01.T01:intron 35.0%
!! CACCTAAAATCTTCTAGCTT+TGG + Chr5:21523027-21523046 None:intergenic 35.0%
!! CTAAAATCTTCTAGCTTTGG+TGG + Chr5:21523024-21523043 None:intergenic 35.0%
!! CTTTTCTAGCCGTTGTTAAA+CGG + Chr5:21522814-21522833 None:intergenic 35.0%
!! GTGATGATGATTTTGATGAG+AGG + Chr5:21522674-21522693 None:intergenic 35.0%
!! GTTGATGATTCTGGTTCAAT+AGG - Chr5:21523205-21523224 MsG0580025633.01.T01:intron 35.0%
!! TTTGGCTGCTCTAAAGTATT+GGG - Chr5:21525540-21525559 MsG0580025633.01.T01:intron 35.0%
!!! AACATTATTTTGGTTCCTGC+AGG - Chr5:21526372-21526391 MsG0580025633.01.T01:CDS 35.0%
!!! GCATAATGGTTTTAGAGTGT+AGG - Chr5:21524189-21524208 MsG0580025633.01.T01:intron 35.0%
!!! GCTTTTTCAAACAACAACTC+TGG - Chr5:21523175-21523194 MsG0580025633.01.T01:CDS 35.0%
AAATAGAACTCAGCCGATGT+TGG + Chr5:21527019-21527038 None:intergenic 40.0%
AACCAACTGAGCATTTCCAT+GGG + Chr5:21522620-21522639 None:intergenic 40.0%
AATACAGTGAGTGGTGTGAT+AGG + Chr5:21524645-21524664 None:intergenic 40.0%
AATTCACATGGTGCAGCAAA+TGG + Chr5:21524387-21524406 None:intergenic 40.0%
ACAGCTGTTATCCCATAGAT+GGG + Chr5:21524018-21524037 None:intergenic 40.0%
AGCCAAATCATAGGATCTTG+CGG + Chr5:21525527-21525546 None:intergenic 40.0%
AGCTATCAACTGAACTGAGT+TGG - Chr5:21522779-21522798 MsG0580025633.01.T01:CDS 40.0%
AGTCATACGGAATACCATAG+GGG + Chr5:21526892-21526911 None:intergenic 40.0%
ATCAACTTTACGGAGCAGTT+TGG + Chr5:21525936-21525955 None:intergenic 40.0%
ATGGGATAACAGCTGTAGAA+GGG - Chr5:21524022-21524041 MsG0580025633.01.T01:intron 40.0%
ATGTTTGCAGCACTTTGTTG+AGG + Chr5:21526800-21526819 None:intergenic 40.0%
ATTATACTAGGGTGGGGAAA+CGG - Chr5:21522928-21522947 MsG0580025633.01.T01:CDS 40.0%
CAGCAACAACATCAACTTCT+CGG - Chr5:21526835-21526854 MsG0580025633.01.T01:five_prime_UTR 40.0%
CATGATTACAGCAACTGAAG+AGG - Chr5:21526577-21526596 MsG0580025633.01.T01:CDS 40.0%
CATTCAACATCAGCAACCAA+TGG - Chr5:21526859-21526878 MsG0580025633.01.T01:intron 40.0%
CCATTATGCAACTTCAATGC+TGG + Chr5:21524178-21524197 None:intergenic 40.0%
CTAAGGTGGCAATGTGAATT+TGG - Chr5:21525797-21525816 MsG0580025633.01.T01:CDS 40.0%
CTGAACAGACAAGAAAGCAA+AGG + Chr5:21524415-21524434 None:intergenic 40.0%
CTTGAAAACCAGTAAGATCC+TGG + Chr5:21523156-21523175 None:intergenic 40.0%
GAAGATATGAAGCCCATCTA+TGG - Chr5:21524003-21524022 MsG0580025633.01.T01:intron 40.0%
GACTTGTATCTCGGAACATT+TGG - Chr5:21526449-21526468 MsG0580025633.01.T01:CDS 40.0%
GAGATACAAGTCTTTGTTCC+CGG + Chr5:21526441-21526460 None:intergenic 40.0%
GAGTCATACGGAATACCATA+GGG + Chr5:21526893-21526912 None:intergenic 40.0%
GATCATCATCACTACTTTGG+TGG - Chr5:21523094-21523113 MsG0580025633.01.T01:CDS 40.0%
GGGAACAAAGACTTGTATCT+CGG - Chr5:21526440-21526459 MsG0580025633.01.T01:CDS 40.0%
TAAGCCGTATTCGAGTCATA+CGG + Chr5:21526905-21526924 None:intergenic 40.0%
TACAGCTGTTATCCCATAGA+TGG + Chr5:21524019-21524038 None:intergenic 40.0%
TAGCATGAAAATGCTGGAAG+AGG + Chr5:21526940-21526959 None:intergenic 40.0%
TATGGGATAACAGCTGTAGA+AGG - Chr5:21524021-21524040 MsG0580025633.01.T01:intron 40.0%
TCATCATCACTACTTTGGTG+GGG - Chr5:21523096-21523115 MsG0580025633.01.T01:CDS 40.0%
TGAGATGAACAGATATGACG+TGG - Chr5:21526664-21526683 MsG0580025633.01.T01:CDS 40.0%
TGGTACTAGCATGAAAATGC+TGG + Chr5:21526946-21526965 None:intergenic 40.0%
TGTTTGCAGCACTTTGTTGA+GGG + Chr5:21526799-21526818 None:intergenic 40.0%
TTTGCTGCACCATGTGAATT+GGG - Chr5:21524387-21524406 MsG0580025633.01.T01:intron 40.0%
! ATTGTCATGGCATGGTTTGT+AGG - Chr5:21525478-21525497 MsG0580025633.01.T01:intron 40.0%
! ATTTGCTGCACCATGTGAAT+TGG - Chr5:21524386-21524405 MsG0580025633.01.T01:intron 40.0%
! CATCGGCTGAGTTCTATTTA+TGG - Chr5:21527020-21527039 MsG0580025633.01.T01:intron 40.0%
! CATTGGTTGCTGATGTTGAA+TGG + Chr5:21526861-21526880 None:intergenic 40.0%
! CCAGCATTGAAGTTGCATAA+TGG - Chr5:21524175-21524194 MsG0580025633.01.T01:intron 40.0%
! TCTGGTTCAATAGGGAAATC+AGG - Chr5:21523214-21523233 MsG0580025633.01.T01:intron 40.0%
! TGATGAGAGGAGTGTAGTAA+CGG + Chr5:21522661-21522680 None:intergenic 40.0%
!! AAATCTTCTAGCTTTGGTGG+TGG + Chr5:21523021-21523040 None:intergenic 40.0%
!! CTTTAGAGCAGCCAAATCAT+AGG + Chr5:21525536-21525555 None:intergenic 40.0%
!! TTCTTGGCTTTTCCTTTGCA+TGG - Chr5:21525292-21525311 MsG0580025633.01.T01:intron 40.0%
!! TTGGCTGCTCTAAAGTATTG+GGG - Chr5:21525541-21525560 MsG0580025633.01.T01:intron 40.0%
!!! CAACCCCCTTTTTTACTACA+AGG + Chr5:21525048-21525067 None:intergenic 40.0%
!!! TTTTAGAGTGTAGGACACCT+GGG - Chr5:21524198-21524217 MsG0580025633.01.T01:intron 40.0%
AAATCAGGACAAGCTGCATG+TGG - Chr5:21523229-21523248 MsG0580025633.01.T01:intron 45.0%
AAGAGTAGTGGCTTCTCAAG+AGG - Chr5:21526258-21526277 MsG0580025633.01.T01:intron 45.0%
AAGGGAAGGTCAAGCTAGAA+GGG - Chr5:21524040-21524059 MsG0580025633.01.T01:intron 45.0%
AATCAGGACAAGCTGCATGT+GGG - Chr5:21523230-21523249 MsG0580025633.01.T01:intron 45.0%
AGTGACTCTTACAGGGAAGT+TGG + Chr5:21525581-21525600 None:intergenic 45.0%
ATGAAGAGCTCTCTTCCAGT+TGG - Chr5:21526695-21526714 MsG0580025633.01.T01:CDS 45.0%
ATTTGCGCCTCGGAACTTTA+TGG + Chr5:21526630-21526649 None:intergenic 45.0%
CCTCTCTCAGAACAAACTCA+CGG - Chr5:21524738-21524757 MsG0580025633.01.T01:intron 45.0%
CGAGTCATACGGAATACCAT+AGG + Chr5:21526894-21526913 None:intergenic 45.0%
CTCTCTCAGAACAAACTCAC+GGG - Chr5:21524739-21524758 MsG0580025633.01.T01:intron 45.0%
GAAAACCAGTAAGATCCTGG+TGG + Chr5:21523153-21523172 None:intergenic 45.0%
GAACCAACTGAGCATTTCCA+TGG + Chr5:21522621-21522640 None:intergenic 45.0%
GATAACAGCTGTAGAAGGGA+AGG - Chr5:21524026-21524045 MsG0580025633.01.T01:intron 45.0%
GTAGCGCATGCAAATGTGAT+TGG - Chr5:21525167-21525186 MsG0580025633.01.T01:intron 45.0%
TCTTCTTGCAGGAAGAGTAG+TGG - Chr5:21526246-21526265 MsG0580025633.01.T01:intron 45.0%
TGATTCTGCAGCTCCATCAT+TGG + Chr5:21526966-21526985 None:intergenic 45.0%
TTACAAACCTTGTGACACCC+CGG + Chr5:21526296-21526315 None:intergenic 45.0%
! CTGATTCTAGAGAACGCTTC+AGG + Chr5:21526736-21526755 None:intergenic 45.0%
! TTTTGCAGGCATAGATGGAC+AGG - Chr5:21523981-21524000 MsG0580025633.01.T01:intron 45.0%
!! CAATTTACCGTGGTGTCACT+AGG - Chr5:21523452-21523471 MsG0580025633.01.T01:intron 45.0%
!! GGCTCTGAAGTTGATGATTC+TGG - Chr5:21523196-21523215 MsG0580025633.01.T01:CDS 45.0%
!! TGGCTGCTCTAAAGTATTGG+GGG - Chr5:21525542-21525561 MsG0580025633.01.T01:intron 45.0%
!!! GTTTTAGAGTGTAGGACACC+TGG - Chr5:21524197-21524216 MsG0580025633.01.T01:intron 45.0%
!!! TTTATTTATGATTTTAATTT+GGG - Chr5:21523956-21523975 MsG0580025633.01.T01:intron 5.0%
!!! TTTTATTTATGATTTTAATT+TGG - Chr5:21523955-21523974 MsG0580025633.01.T01:intron 5.0%
AAGAGCTCTCTTCCAGTTGG+CGG - Chr5:21526698-21526717 MsG0580025633.01.T01:CDS 50.0%
AAGAGGAGCTTCCATCTACC+GGG - Chr5:21526275-21526294 MsG0580025633.01.T01:intron 50.0%
AGTCTTTGTTCCCGGCAACA+CGG + Chr5:21526433-21526452 None:intergenic 50.0%
ATTGCGGCCATAAAGTTCCG+AGG - Chr5:21526620-21526639 MsG0580025633.01.T01:CDS 50.0%
CAACACCACCAGGATCTTAC+TGG - Chr5:21523145-21523164 MsG0580025633.01.T01:CDS 50.0%
CAAGAGGAGCTTCCATCTAC+CGG - Chr5:21526274-21526293 MsG0580025633.01.T01:intron 50.0%
CAATGCCATGCCACCAACAT+CGG - Chr5:21527003-21527022 MsG0580025633.01.T01:intron 50.0%
CACCCATGGAAATGCTCAGT+TGG - Chr5:21522615-21522634 MsG0580025633.01.T01:three_prime_UTR 50.0%
CCAATGGCTTCAATCCCCTA+TGG - Chr5:21526875-21526894 MsG0580025633.01.T01:intron 50.0%
CCATAGGGGATTGAAGCCAT+TGG + Chr5:21526878-21526897 None:intergenic 50.0%
CTTTATGGCCGCAATGTCGT+AGG + Chr5:21526615-21526634 None:intergenic 50.0%
GAAAAGCCAGCATGCACCAA+GGG + Chr5:21525323-21525342 None:intergenic 50.0%
GAAGGGAAGGTCAAGCTAGA+AGG - Chr5:21524039-21524058 MsG0580025633.01.T01:intron 50.0%
GAGTGGTGTGATAGGTGATG+TGG + Chr5:21524637-21524656 None:intergenic 50.0%
GCAGAATCAGCAGCAAATGG+AGG - Chr5:21526977-21526996 MsG0580025633.01.T01:intron 50.0%
GCTAATGGAACTCTGTCGCT+CGG - Chr5:21523334-21523353 MsG0580025633.01.T01:intron 50.0%
GCTGCAGAATCAGCAGCAAA+TGG - Chr5:21526974-21526993 MsG0580025633.01.T01:intron 50.0%
GCTGCATGTGGGAATGAGTT+TGG - Chr5:21523241-21523260 MsG0580025633.01.T01:intron 50.0%
GGCCGCAAGATCCTATGATT+TGG - Chr5:21525522-21525541 MsG0580025633.01.T01:intron 50.0%
TAGAACTCAGCCGATGTTGG+TGG + Chr5:21527016-21527035 None:intergenic 50.0%
TCAAGCTAGAAGGGTCGTCA+AGG - Chr5:21524049-21524068 MsG0580025633.01.T01:intron 50.0%
TCACATGGTGCAGCAAATGG+CGG + Chr5:21524384-21524403 None:intergenic 50.0%
TTGTCACTGCATTTGCGCCT+CGG + Chr5:21526640-21526659 None:intergenic 50.0%
! CAGTAAGATCCTGGTGGTGT+TGG + Chr5:21523147-21523166 None:intergenic 50.0%
! GGGGATTTTGCAGGCATAGA+TGG - Chr5:21523976-21523995 MsG0580025633.01.T01:intron 50.0%
! GTCATGGCATGGTTTGTAGG+TGG - Chr5:21525481-21525500 MsG0580025633.01.T01:intron 50.0%
!! AGGGAAGTTGGTAGTAGCAG+TGG + Chr5:21525569-21525588 None:intergenic 50.0%
!! CCGTGAGTTTGTTCTGAGAG+AGG + Chr5:21524741-21524760 None:intergenic 50.0%
!! GCAAAGGCACCCAATTCACA+TGG + Chr5:21524399-21524418 None:intergenic 50.0%
!! GGGAAGTTGGTAGTAGCAGT+GGG + Chr5:21525568-21525587 None:intergenic 50.0%
AGAGCTCTCTTCCAGTTGGC+GGG - Chr5:21526699-21526718 MsG0580025633.01.T01:CDS 55.0%
AGAGGAGCTTCCATCTACCG+GGG - Chr5:21526276-21526295 MsG0580025633.01.T01:intron 55.0%
GGAAAAGCCAGCATGCACCA+AGG + Chr5:21525324-21525343 None:intergenic 55.0%
GGTAGGTGGCAAGCGAGAAT+TGG - Chr5:21526407-21526426 MsG0580025633.01.T01:CDS 55.0%
GTTGTTGCTGCTGCTGCTGT+TGG + Chr5:21526825-21526844 None:intergenic 55.0%
TCCTGCAGGCATCACCAACA+GGG - Chr5:21526386-21526405 MsG0580025633.01.T01:CDS 55.0%
TTCCTGCAGGCATCACCAAC+AGG - Chr5:21526385-21526404 MsG0580025633.01.T01:CDS 55.0%
!! CTAGCTTTGGTGGTGGAGTG+TGG + Chr5:21523014-21523033 None:intergenic 55.0%
!! GATCCTGGTGGTGTTGGTGT+TGG + Chr5:21523141-21523160 None:intergenic 55.0%
!! TTGGTGTTGGTGCTGGTGCT+GGG + Chr5:21523128-21523147 None:intergenic 55.0%
AGCCAGCATGCACCAAGGGA+CGG + Chr5:21525319-21525338 None:intergenic 60.0%
CCAAGGGACGGTCCATGCAA+AGG + Chr5:21525307-21525326 None:intergenic 60.0%
CCTTGTGACACCCCGGTAGA+TGG + Chr5:21526289-21526308 None:intergenic 60.0%
CCTTTGCATGGACCGTCCCT+TGG - Chr5:21525304-21525323 MsG0580025633.01.T01:intron 60.0%
CGAGAATTGGCCGTGTTGCC+GGG - Chr5:21526420-21526439 MsG0580025633.01.T01:CDS 60.0%
GAGCTCTCTTCCAGTTGGCG+GGG - Chr5:21526700-21526719 MsG0580025633.01.T01:CDS 60.0%
GCACCAACACCAACACCACC+AGG - Chr5:21523135-21523154 MsG0580025633.01.T01:CDS 60.0%
GCAGGCATCACCAACAGGGT+AGG - Chr5:21526390-21526409 MsG0580025633.01.T01:CDS 60.0%
GCGAGAATTGGCCGTGTTGC+CGG - Chr5:21526419-21526438 MsG0580025633.01.T01:CDS 60.0%
GGCATCACCAACAGGGTAGG+TGG - Chr5:21526393-21526412 MsG0580025633.01.T01:CDS 60.0%
TCGCTTGCCACCTACCCTGT+TGG + Chr5:21526403-21526422 None:intergenic 60.0%
TGCTTACTCCACCGCTGCTG+CGG - Chr5:21523300-21523319 MsG0580025633.01.T01:intron 60.0%
! CCATCTACCGGGGTGTCACA+AGG - Chr5:21526286-21526305 MsG0580025633.01.T01:intron 60.0%
!! ACCCTGTTGGTGATGCCTGC+AGG + Chr5:21526390-21526409 None:intergenic 60.0%
!! CTCAGCCGATGTTGGTGGCA+TGG + Chr5:21527011-21527030 None:intergenic 60.0%
!! GGTGGTGTTGGTGTTGGTGC+TGG + Chr5:21523135-21523154 None:intergenic 60.0%
!! GTTGGTGTTGGTGCTGGTGC+TGG + Chr5:21523129-21523148 None:intergenic 60.0%
CGTTTAGCTGCCCCGCCAAC+TGG + Chr5:21526713-21526732 None:intergenic 65.0%
! GACCGTCCCTTGGTGCATGC+TGG - Chr5:21525314-21525333 MsG0580025633.01.T01:intron 65.0%
!! CGGTGTTGCGCAGAGTTCCG+AGG - Chr5:21523354-21523373 MsG0580025633.01.T01:CDS 65.0%
!! GTTGGTGCTGGTGCTGGGAG+TGG + Chr5:21523123-21523142 None:intergenic 65.0%
ACCGCTGCTGCGGCAGCGGT+GGG - Chr5:21523310-21523329 MsG0580025633.01.T01:intron 75.0%
CTCCACCGCTGCTGCGGCAG+CGG - Chr5:21523306-21523325 MsG0580025633.01.T01:intron 75.0%
GCGGCAGCGGTGGGGGCTAA+TGG - Chr5:21523319-21523338 MsG0580025633.01.T01:intron 75.0%
! CACCGCTGCCGCAGCAGCGG+TGG + Chr5:21523311-21523330 None:intergenic 80.0%
! CACCGCTGCTGCGGCAGCGG+TGG - Chr5:21523309-21523328 MsG0580025633.01.T01:intron 80.0%
! CCCCACCGCTGCCGCAGCAG+CGG + Chr5:21523314-21523333 None:intergenic 80.0%
! CCGCTGCTGCGGCAGCGGTG+GGG - Chr5:21523311-21523330 MsG0580025633.01.T01:intron 80.0%
! CGCTGCTGCGGCAGCGGTGG+GGG - Chr5:21523312-21523331 MsG0580025633.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 21522610 21527197 21522610 ID=MsG0580025633.01;Name=MsG0580025633.01
Chr5 mRNA 21522610 21527197 21522610 ID=MsG0580025633.01.T01;Parent=MsG0580025633.01;Name=MsG0580025633.01.T01;_AED=0.24;_eAED=0.24;_QI=263|0.85|0.75|1|0.85|0.75|8|137|402
Chr5 exon 21522610 21523219 21522610 ID=MsG0580025633.01.T01:exon:9167;Parent=MsG0580025633.01.T01
Chr5 exon 21523337 21523413 21523337 ID=MsG0580025633.01.T01:exon:9166;Parent=MsG0580025633.01.T01
Chr5 exon 21523500 21523550 21523500 ID=MsG0580025633.01.T01:exon:9165;Parent=MsG0580025633.01.T01
Chr5 exon 21523632 21523705 21523632 ID=MsG0580025633.01.T01:exon:9164;Parent=MsG0580025633.01.T01
Chr5 exon 21524219 21524307 21524219 ID=MsG0580025633.01.T01:exon:9163;Parent=MsG0580025633.01.T01
Chr5 exon 21525760 21525818 21525760 ID=MsG0580025633.01.T01:exon:9162;Parent=MsG0580025633.01.T01
Chr5 exon 21526334 21526869 21526334 ID=MsG0580025633.01.T01:exon:9161;Parent=MsG0580025633.01.T01
Chr5 exon 21527085 21527197 21527085 ID=MsG0580025633.01.T01:exon:9160;Parent=MsG0580025633.01.T01
Chr5 five_prime_UTR 21527085 21527197 21527085 ID=MsG0580025633.01.T01:five_prime_utr;Parent=MsG0580025633.01.T01
Chr5 five_prime_UTR 21526720 21526869 21526720 ID=MsG0580025633.01.T01:five_prime_utr;Parent=MsG0580025633.01.T01
Chr5 CDS 21526334 21526719 21526334 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21525760 21525818 21525760 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21524219 21524307 21524219 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21523632 21523705 21523632 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21523500 21523550 21523500 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21523337 21523413 21523337 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 CDS 21522747 21523219 21522747 ID=MsG0580025633.01.T01:cds;Parent=MsG0580025633.01.T01
Chr5 three_prime_UTR 21522610 21522746 21522610 ID=MsG0580025633.01.T01:three_prime_utr;Parent=MsG0580025633.01.T01
Gene Sequence

>MsG0580025633.01.T01

ATGTATGATCATCATCACTACTTTGGTGGGGACCACTCCCAGCACCAGCACCAACACCAACACCACCAGGATCTTACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCAATAGGGAAATCAGGACAAGCTGCATGTGGGAATGAGTTTGGAACAACTCATTGTGTTGAGTCTGTGAATGAGTTTGCTGCTTACTCCACCGCTGCTGCGGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTCGGTGTTGCGCAGAGTTCCGAGGAAAATGCTATTGTTGCTGTTGCTGCTGATTCTGATAGCTCTAAGAAGATTGTTGATACTTTTGGCCAAAGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACAGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGGGAAGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAAGAATTGGAAGAGATGAAGAATGTAACAAAGCAAGAATTCATTGCTTCATTGAGAAGGAAGAGTAGTGGCTTCTCAAGAGGAGCTTCCATCTACCGGGGTGTCACAAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGGAACAAAGACTTGTATCTCGGAACATTTGCAACTGAAGAGGAAGCTGCAGAGGCCTACGACATTGCGGCCATAAAGTTCCGAGGCGCAAATGCAGTGACAAACTTTGAGATGAACAGATATGACGTGGAAGCGATAATGAAGAGCTCTCTTCCAGTTGGCGGGGCAGCTAAACGCCTGAAGCGTTCTCTAGAATCAGAACAGAAAGCTTCTACTGACAACAACATTCAGCAGAACAACCCTCAACAAAGTGCTGCAAACATGACCAACAGCAGCAGCAGCAACAACATCAACTTCTCGGCCATTCAACATCAGCAACCAATGGCTTCAATCCCCTATGGTATTCCGTATGACTCGAATACGGCTTACTATCATCACAACCTCTTCCAGCATTTTCATGCTAGTACCAATGATGGAGCTGCAGAATCAGCAGCAAATGGAGGACTCAATGCCATGCCACCAACATCGGCTGAGTTCTATTTATGGCCAAATCAGTCCTATTGA

Protein sequence

>MsG0580025633.01.T01

MYDHHHYFGGDHSQHQHQHQHHQDLTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEFAAYSTAAAAAVGANGTLSLGVAQSSEENAIVAVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKNVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASTDNNIQQNNPQQSAANMTNSSSSNNINFSAIQHQQPMASIPYGIPYDSNTAYYHHNLFQHFHASTNDGAAESAANGGLNAMPPTSAEFYLWPNQSY*