AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006381.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006381.01.T01 MTR_2g007300 93.469 245 14 1 1 245 1 243 3.21e-164 454
MsG0280006381.01.T01 MTR_2g007640 64.824 199 67 2 49 244 49 247 1.77e-90 267
MsG0280006381.01.T01 MTR_2g007640 62.147 177 64 2 49 222 49 225 1.14e-73 224
MsG0280006381.01.T01 MTR_2g007640 58.333 96 38 1 49 142 49 144 1.12e-31 115
MsG0280006381.01.T01 MTR_1g116320 26.699 206 117 7 59 235 30 230 3.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006381.01.T01 AT3G26070 67.742 186 57 1 62 244 56 241 1.01e-91 270
MsG0280006381.01.T01 AT3G26080 55.702 228 90 4 23 244 11 233 1.86e-82 246
MsG0280006381.01.T01 AT3G26080 54.299 221 70 3 55 244 42 262 4.78e-76 231

Find 70 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTAACTTGAAGCATTT+TGG 0.105595 2:-1123504 MsG0280006381.01.T01:three_prime_UTR
CTAGTTTACTTGATGGAAAA+TGG 0.188190 2:-1126245 MsG0280006381.01.T01:CDS
AAATTTGATACCTTCAAAAT+TGG 0.195834 2:-1124667 MsG0280006381.01.T01:CDS
ATCAAGAAGTTCTTCTTTAA+TGG 0.206372 2:+1126468 None:intergenic
GCCACTTTCTTTGCATTTAG+AGG 0.223580 2:+1124694 None:intergenic
TCAACCCTTTGTTGGTCTTC+AGG 0.234480 2:+1126409 None:intergenic
CACTCTCAGGGCCCAAAATA+TGG 0.237918 2:-1124849 MsG0280006381.01.T01:CDS
AAACTTGTTCATCTTGAAAA+TGG 0.247984 2:-1123691 MsG0280006381.01.T01:CDS
ACGGTCCAGATTCCATATTT+TGG 0.250687 2:+1124837 None:intergenic
TGAACTTGAAATAACATATT+TGG 0.312424 2:-1123898 MsG0280006381.01.T01:CDS
TTGCCTTTCTTAAAGATTGC+AGG 0.324447 2:+1126502 None:intergenic
CTCAAGTCTAGTTTACTTGA+TGG 0.329603 2:-1126252 MsG0280006381.01.T01:CDS
CAATCAATGCTGACACTCTC+AGG 0.359671 2:-1124862 MsG0280006381.01.T01:CDS
AATGAATATAATAATGTAAT+GGG 0.376709 2:-1123429 MsG0280006381.01.T01:three_prime_UTR
GACTTGAGAGGCTGCTTTGT+TGG 0.380806 2:+1126267 None:intergenic
AGGGCCCAAAATATGGAATC+TGG 0.402604 2:-1124842 MsG0280006381.01.T01:CDS
TGCCTCCAGAGCAAAGCTTT+AGG 0.407184 2:+1123336 None:intergenic
AACGATTTAAACTCACCTAA+TGG 0.414557 2:-1126713 MsG0280006381.01.T01:exon
TTTGATACCTTCAAAATTGG+AGG 0.416449 2:-1124664 MsG0280006381.01.T01:CDS
CAACCTGATCAACCCTTTGT+TGG 0.421516 2:+1126401 None:intergenic
TAGTAGCAAGGTTGTGATTG+TGG 0.421596 2:+1126560 None:intergenic
TTCCCTGCAATCTTTAAGAA+AGG 0.424398 2:-1126505 MsG0280006381.01.T01:CDS
AAATGGTGGATCCATCTTAC+CGG 0.426574 2:-1123674 MsG0280006381.01.T01:CDS
CTTCAAGTTAGCTTGAATAG+TGG 0.427481 2:+1123512 None:intergenic
AAGTAGAAGATAAGGCCATT+AGG 0.430468 2:+1126698 None:intergenic
TTTATGATGTGAATGATTTG+TGG 0.440863 2:+1126654 None:intergenic
TAGTTTACTTGATGGAAAAT+GGG 0.451587 2:-1126244 MsG0280006381.01.T01:CDS
AGTTCACCACGAGCTGTGTC+AGG 0.463279 2:+1123915 None:intergenic
AGACCAACAAAGGGTTGATC+AGG 0.472264 2:-1126404 MsG0280006381.01.T01:intron
GAATAAGAATAAGAAGATAG+TGG 0.474828 2:+1126616 None:intergenic
CACCTAAAGCTTTGCTCTGG+AGG 0.479558 2:-1123338 MsG0280006381.01.T01:three_prime_UTR
AAAGAGTGAAGTAGAAGATA+AGG 0.481353 2:+1126690 None:intergenic
TATCACCTAAAGCTTTGCTC+TGG 0.481924 2:-1123341 MsG0280006381.01.T01:three_prime_UTR
AATAAGAAGATAGTGGTGAA+TGG 0.489559 2:+1126623 None:intergenic
TGCCTTTCTTAAAGATTGCA+GGG 0.492269 2:+1126503 None:intergenic
GAATGAATATAATAATGTAA+TGG 0.492853 2:-1123430 MsG0280006381.01.T01:three_prime_UTR
CATGCAGGAACCCGGTAAGA+TGG 0.494136 2:+1123663 None:intergenic
TCAGTCAATCTTGCAAACTA+AGG 0.501462 2:-1126202 MsG0280006381.01.T01:intron
CGACTTCAGAAAGCGCTGAC+GGG 0.508365 2:+1123569 None:intergenic
ACCTCTAAATGCAAAGAAAG+TGG 0.508669 2:-1124695 MsG0280006381.01.T01:CDS
CTTGTTCATCTTGAAAATGG+TGG 0.510401 2:-1123688 MsG0280006381.01.T01:CDS
CCTTTGTTGGTCTTCAGGAG+TGG 0.511583 2:+1126414 None:intergenic
TCGACTTCAGAAAGCGCTGA+CGG 0.520533 2:+1123568 None:intergenic
AAGAAAACACAACAGTGATA+AGG 0.521202 2:+1123613 None:intergenic
GGGTTTATTTCTCTTGAATG+TGG 0.527364 2:-1123408 MsG0280006381.01.T01:three_prime_UTR
ATCTGGACCGTTCTTCAACC+AGG 0.530767 2:-1124825 MsG0280006381.01.T01:intron
GCTGTGTCAGGAGCCTTGAC+AGG 0.549937 2:+1123927 None:intergenic
CACTCCTGAAGACCAACAAA+GGG 0.562257 2:-1126413 MsG0280006381.01.T01:CDS
TCCTCGATCAAGTGATGCAA+TGG 0.566938 2:+1126444 None:intergenic
AAGAAGATAGTGGTGAATGG+AGG 0.568929 2:+1126626 None:intergenic
CAGTATATCATGCAGGAACC+CGG 0.569836 2:+1123655 None:intergenic
TTGGATTAACTGCTTCAAGT+TGG 0.577375 2:+1126286 None:intergenic
GGTTGTGATTGTGGTAGATG+AGG 0.590635 2:+1126569 None:intergenic
AATCAATGCTGACACTCTCA+GGG 0.592341 2:-1124861 MsG0280006381.01.T01:CDS
CCACTCCTGAAGACCAACAA+AGG 0.595548 2:-1126414 MsG0280006381.01.T01:CDS
AATGGTGGATCCATCTTACC+GGG 0.603396 2:-1123673 MsG0280006381.01.T01:CDS
ATAATGACAGTATATCATGC+AGG 0.622717 2:+1123648 None:intergenic
GTTGTGATTGTGGTAGATGA+GGG 0.623766 2:+1126570 None:intergenic
TGTGTCACCTGGTTGAAGAA+CGG 0.624616 2:+1124818 None:intergenic
ACATTTGCAGATACCTGTCA+AGG 0.625872 2:-1123940 MsG0280006381.01.T01:intron
TAATTTGACAGGGTATCAAG+AGG 0.636818 2:-1123723 MsG0280006381.01.T01:intron
AGGGTATCAAGAGGTGACAA+AGG 0.637311 2:-1123714 MsG0280006381.01.T01:CDS
AGTTTGCAAGATTGACTGAG+AGG 0.637387 2:+1126206 None:intergenic
GAATGATTTGTGGTGTTGAG+AGG 0.643015 2:+1126664 None:intergenic
TCAAGTAAACTAGACTTGAG+AGG 0.643211 2:+1126255 None:intergenic
ATGAATATAATAATGTAATG+GGG 0.645736 2:-1123428 MsG0280006381.01.T01:three_prime_UTR
AAGGCTCCTGACACAGCTCG+TGG 0.649152 2:-1123921 MsG0280006381.01.T01:CDS
GCCATTGCATCACTTGATCG+AGG 0.654824 2:-1126445 MsG0280006381.01.T01:CDS
TTGTGATTGTGGTAGATGAG+GGG 0.690034 2:+1126571 None:intergenic
CATATTTGGATGAAGAACTG+AGG 0.704904 2:-1123884 MsG0280006381.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATATAATAATGTAAT+GGG - Chr2:1126611-1126630 MsG0280006381.01.T01:CDS 10.0%
!! ATGAATATAATAATGTAATG+GGG - Chr2:1126612-1126631 MsG0280006381.01.T01:CDS 15.0%
!! ATTTCTACAAATTAATGATT+TGG + Chr2:1125584-1125603 None:intergenic 15.0%
!! GAATGAATATAATAATGTAA+TGG - Chr2:1126610-1126629 MsG0280006381.01.T01:CDS 15.0%
!! TAACAAGATAAAAATAGAAA+AGG - Chr2:1124042-1124061 MsG0280006381.01.T01:intron 15.0%
!! TATTTATACTCATATAATGA+AGG - Chr2:1124615-1124634 MsG0280006381.01.T01:intron 15.0%
!! TTAAAAATGAAATTCTATTG+AGG - Chr2:1125868-1125887 MsG0280006381.01.T01:intron 15.0%
!! TTAGATTTGATATGATAAAT+TGG - Chr2:1124499-1124518 MsG0280006381.01.T01:intron 15.0%
!!! TTCTGAAAATAAGATAAAAA+TGG - Chr2:1124113-1124132 MsG0280006381.01.T01:intron 15.0%
!! AAAACAAGTATATAGAGTAT+AGG + Chr2:1124777-1124796 None:intergenic 20.0%
!! AAATCTAACAAAAAACAAAG+GGG + Chr2:1124487-1124506 None:intergenic 20.0%
!! AAATTTGATACCTTCAAAAT+TGG - Chr2:1125373-1125392 MsG0280006381.01.T01:intron 20.0%
!! AATAAGATAAAAATGGCTTA+TGG - Chr2:1124120-1124139 MsG0280006381.01.T01:intron 20.0%
!! ATTAAGTAGTTTATCCAAAT+AGG + Chr2:1123897-1123916 None:intergenic 20.0%
!! CAAATCTAACAAAAAACAAA+GGG + Chr2:1124488-1124507 None:intergenic 20.0%
!! GATTTCATTCAAACTTAAAT+AGG - Chr2:1124949-1124968 MsG0280006381.01.T01:intron 20.0%
!! TATGATGATCAAAGTAATTA+TGG + Chr2:1126076-1126095 None:intergenic 20.0%
!! TCAAATCTAACAAAAAACAA+AGG + Chr2:1124489-1124508 None:intergenic 20.0%
!! TGAACTTGAAATAACATATT+TGG - Chr2:1126142-1126161 MsG0280006381.01.T01:intron 20.0%
!! TTAAGTAGTTTATCCAAATA+GGG + Chr2:1123896-1123915 None:intergenic 20.0%
!! TTGGATAAACTACTTAATTA+AGG - Chr2:1123899-1123918 MsG0280006381.01.T01:CDS 20.0%
!! TTTCTCATTATAATTTGACA+GGG - Chr2:1126307-1126326 MsG0280006381.01.T01:intron 20.0%
! AACTGTGGAATTAAATACAT+AGG + Chr2:1125982-1126001 None:intergenic 25.0%
! ACATATGCAAATGTTAGAAT+TGG + Chr2:1125287-1125306 None:intergenic 25.0%
! ACTGTGGAATTAAATACATA+GGG + Chr2:1125981-1126000 None:intergenic 25.0%
! ATATAGAAGCTGAAAATTAG+AGG + Chr2:1124695-1124714 None:intergenic 25.0%
! ATATGGTAAGGAAAAAGAAA+TGG + Chr2:1123868-1123887 None:intergenic 25.0%
! ATCAAGAAGTTCTTCTTTAA+TGG + Chr2:1123575-1123594 None:intergenic 25.0%
! CTTTCTCATTATAATTTGAC+AGG - Chr2:1126306-1126325 MsG0280006381.01.T01:intron 25.0%
! GAATAAGAATAAGAAGATAG+TGG + Chr2:1123427-1123446 None:intergenic 25.0%
! GTTTGTTTATATTACTGCAT+TGG - Chr2:1126198-1126217 MsG0280006381.01.T01:intron 25.0%
! TAAACGAATCAATATTCTGT+AGG - Chr2:1125306-1125325 MsG0280006381.01.T01:intron 25.0%
! TAATGTCTATATATACCACA+TGG + Chr2:1126267-1126286 None:intergenic 25.0%
! TAGTTTACTTGATGGAAAAT+GGG - Chr2:1123796-1123815 MsG0280006381.01.T01:intron 25.0%
! TTGTAATATTCTAGATGTGA+TGG - Chr2:1125449-1125468 MsG0280006381.01.T01:intron 25.0%
! TTTATGATGTGAATGATTTG+TGG + Chr2:1123389-1123408 None:intergenic 25.0%
!! AAACTTGTTCATCTTGAAAA+TGG - Chr2:1126349-1126368 MsG0280006381.01.T01:intron 25.0%
!! GATTTACAGTATGTATTTTG+TGG + Chr2:1124800-1124819 None:intergenic 25.0%
!! GTTTCTCTTAAAGTTTTTCT+AGG - Chr2:1125613-1125632 MsG0280006381.01.T01:intron 25.0%
!!! GTAACATGTATAAGTTTTGT+TGG + Chr2:1125925-1125944 None:intergenic 25.0%
AAAGAGTGAAGTAGAAGATA+AGG + Chr2:1123353-1123372 None:intergenic 30.0%
AACGATTTAAACTCACCTAA+TGG - Chr2:1123327-1123346 MsG0280006381.01.T01:three_prime_UTR 30.0%
AAGAAAACACAACAGTGATA+AGG + Chr2:1126430-1126449 None:intergenic 30.0%
AAGAAGAGTAGATATGATGA+AGG + Chr2:1125668-1125687 None:intergenic 30.0%
AATGACCTTAAAGGTTTACT+TGG - Chr2:1125051-1125070 MsG0280006381.01.T01:intron 30.0%
AGAAGAGTAGATATGATGAA+GGG + Chr2:1125667-1125686 None:intergenic 30.0%
ATAATGACAGTATATCATGC+AGG + Chr2:1126395-1126414 None:intergenic 30.0%
ATATATCTGACCTCACTTTA+CGG + Chr2:1125516-1125535 None:intergenic 30.0%
ATGAAATGTTGCAGAAAACA+AGG + Chr2:1123675-1123694 None:intergenic 30.0%
ATGACCTTAAAGGTTTACTT+GGG - Chr2:1125052-1125071 MsG0280006381.01.T01:intron 30.0%
ATTTGCAACTTATAGCACAA+GGG + Chr2:1123957-1123976 None:intergenic 30.0%
CTAGTTTACTTGATGGAAAA+TGG - Chr2:1123795-1123814 MsG0280006381.01.T01:intron 30.0%
GACTTATTTCATCTCATCTA+CGG + Chr2:1124202-1124221 None:intergenic 30.0%
GTTACTGATCTCAAAAACTT+TGG + Chr2:1125147-1125166 None:intergenic 30.0%
GTTTGAATGAAATCCAAAAC+AGG + Chr2:1124943-1124962 None:intergenic 30.0%
TAGAAAAGAAGGTGAAAACT+TGG + Chr2:1125736-1125755 None:intergenic 30.0%
TATTTGCAACTTATAGCACA+AGG + Chr2:1123958-1123977 None:intergenic 30.0%
TTGCTACTATCTCACAAAAA+TGG - Chr2:1123494-1123513 MsG0280006381.01.T01:three_prime_UTR 30.0%
TTTGATACCTTCAAAATTGG+AGG - Chr2:1125376-1125395 MsG0280006381.01.T01:intron 30.0%
! AATAAGAAGATAGTGGTGAA+TGG + Chr2:1123420-1123439 None:intergenic 30.0%
! AGCAATTTGAAGTTGAGATT+AGG + Chr2:1126234-1126253 None:intergenic 30.0%
! ATTTTTGTGAGATAGTAGCA+AGG + Chr2:1123495-1123514 None:intergenic 30.0%
! CTGATAATGAATGACCTTAA+AGG - Chr2:1125042-1125061 MsG0280006381.01.T01:intron 30.0%
! TTGTGTTTTCTTCCTTTCAA+GGG - Chr2:1126438-1126457 MsG0280006381.01.T01:CDS 30.0%
! TTGTTGCTACTAGCTTAAAT+AGG - Chr2:1124586-1124605 MsG0280006381.01.T01:intron 30.0%
!! AAGCTAACTTGAAGCATTTT+GGG - Chr2:1126537-1126556 MsG0280006381.01.T01:CDS 30.0%
!! TTAGTCTTGCGAAAATGAAA+GGG + Chr2:1124733-1124752 None:intergenic 30.0%
!! TTTAGTCTTGCGAAAATGAA+AGG + Chr2:1124734-1124753 None:intergenic 30.0%
!!! CAACTTTTTTCACTCTGTTT+CGG - Chr2:1124878-1124897 MsG0280006381.01.T01:CDS 30.0%
!!! TAAGTTTTGTTGGAACTTGT+TGG + Chr2:1125915-1125934 None:intergenic 30.0%
AAATCTTATCCCGTAAAGTG+AGG - Chr2:1125503-1125522 MsG0280006381.01.T01:intron 35.0%
AAGAGATGAGAATGTTGTGT+TGG + Chr2:1125840-1125859 None:intergenic 35.0%
AAGTAGAAGATAAGGCCATT+AGG + Chr2:1123345-1123364 None:intergenic 35.0%
AAGTTGAGATTAGGTACACT+GGG + Chr2:1126225-1126244 None:intergenic 35.0%
AATAAGCTGTTTGTCCAAAC+AGG - Chr2:1123974-1123993 MsG0280006381.01.T01:intron 35.0%
ACACGTTTGATGCATCATAA+TGG + Chr2:1124427-1124446 None:intergenic 35.0%
ACATAGGGAATTGCAGATAA+AGG + Chr2:1125966-1125985 None:intergenic 35.0%
ACCTCTAAATGCAAAGAAAG+TGG - Chr2:1125345-1125364 MsG0280006381.01.T01:intron 35.0%
AGGATCTATCGTAGAAAAGA+AGG + Chr2:1125747-1125766 None:intergenic 35.0%
CAACATTCTCATCTCTTCTT+AGG - Chr2:1125843-1125862 MsG0280006381.01.T01:intron 35.0%
CATATTTGGATGAAGAACTG+AGG - Chr2:1126156-1126175 MsG0280006381.01.T01:intron 35.0%
CTACTTAATTAAGGCCTGTT+TGG - Chr2:1123908-1123927 MsG0280006381.01.T01:CDS 35.0%
CTTGTTCATCTTGAAAATGG+TGG - Chr2:1126352-1126371 MsG0280006381.01.T01:intron 35.0%
GAGTATTATGGTACTAACTG+TGG + Chr2:1125997-1126016 None:intergenic 35.0%
GCAACAATGATCAATCTAGA+TGG + Chr2:1124573-1124592 None:intergenic 35.0%
GCAGAAAACAAGGCATATAA+AGG + Chr2:1123665-1123684 None:intergenic 35.0%
GTAAAGTGAGGTCAGATATA+TGG - Chr2:1125515-1125534 MsG0280006381.01.T01:intron 35.0%
GTCTATGTCAATGCTTCATA+GGG + Chr2:1124256-1124275 None:intergenic 35.0%
GTGGTAAGACTAGACAATAT+AGG + Chr2:1125813-1125832 None:intergenic 35.0%
TAACACTGTCAAAATGTACC+AGG + Chr2:1124995-1125014 None:intergenic 35.0%
TAGATGGTTAGTGAAATGAG+TGG + Chr2:1124557-1124576 None:intergenic 35.0%
TATATCTGACCTCACTTTAC+GGG + Chr2:1125515-1125534 None:intergenic 35.0%
TATGAACTATGAGTCTGTCT+GGG + Chr2:1124227-1124246 None:intergenic 35.0%
TCAAGTAAACTAGACTTGAG+AGG + Chr2:1123788-1123807 None:intergenic 35.0%
TCACTTTACGGGATAAGATT+TGG + Chr2:1125504-1125523 None:intergenic 35.0%
TCAGTCAATCTTGCAAACTA+AGG - Chr2:1123838-1123857 MsG0280006381.01.T01:intron 35.0%
TGCCTTTCTTAAAGATTGCA+GGG + Chr2:1123540-1123559 None:intergenic 35.0%
TGTCTATGTCAATGCTTCAT+AGG + Chr2:1124257-1124276 None:intergenic 35.0%
TTGCCTTTCTTAAAGATTGC+AGG + Chr2:1123541-1123560 None:intergenic 35.0%
TTGCTTAACTATCAACCATG+TGG - Chr2:1126249-1126268 MsG0280006381.01.T01:CDS 35.0%
TTGGATTAACTGCTTCAAGT+TGG + Chr2:1123757-1123776 None:intergenic 35.0%
! CTCAAGTCTAGTTTACTTGA+TGG - Chr2:1123788-1123807 MsG0280006381.01.T01:intron 35.0%
! CTTCAAGTTAGCTTGAATAG+TGG + Chr2:1126531-1126550 None:intergenic 35.0%
! GGGTTTATTTCTCTTGAATG+TGG - Chr2:1126632-1126651 MsG0280006381.01.T01:CDS 35.0%
! GTTGTGTTTTCTTCCTTTCA+AGG - Chr2:1126437-1126456 MsG0280006381.01.T01:CDS 35.0%
! TAATTTGACAGGGTATCAAG+AGG - Chr2:1126317-1126336 MsG0280006381.01.T01:intron 35.0%
! TACTAAGCCTCCAATTTTGA+AGG + Chr2:1125386-1125405 None:intergenic 35.0%
! TCTTTTTCCTTACCATATGC+AGG - Chr2:1123870-1123889 MsG0280006381.01.T01:intron 35.0%
! TGTGTTTTCTTCCTTTCAAG+GGG - Chr2:1126439-1126458 MsG0280006381.01.T01:CDS 35.0%
! TTCCCTGCAATCTTTAAGAA+AGG - Chr2:1123535-1123554 MsG0280006381.01.T01:three_prime_UTR 35.0%
!! CAAGCTAACTTGAAGCATTT+TGG - Chr2:1126536-1126555 MsG0280006381.01.T01:CDS 35.0%
!! GCACTGACACTTTTAATTGA+AGG + Chr2:1124350-1124369 None:intergenic 35.0%
!! TACACACATCAGGAGTATTA+TGG + Chr2:1126009-1126028 None:intergenic 35.0%
!! TTTTCAGAAGCTCTCTAAGA+TGG + Chr2:1124102-1124121 None:intergenic 35.0%
AAAACTTGGCTTAGGTGGTT+TGG + Chr2:1125722-1125741 None:intergenic 40.0%
AATCAATGCTGACACTCTCA+GGG - Chr2:1125179-1125198 MsG0280006381.01.T01:intron 40.0%
ACATTTGCAGATACCTGTCA+AGG - Chr2:1126100-1126119 MsG0280006381.01.T01:intron 40.0%
ACTTATGCTATGAGCACTCA+GGG + Chr2:1124000-1124019 None:intergenic 40.0%
AGAAGGTGAAAACTTGGCTT+AGG + Chr2:1125730-1125749 None:intergenic 40.0%
AGAGAGAGATAGAGAGAGTT+GGG + Chr2:1125772-1125791 None:intergenic 40.0%
AGATGAGAATGTTGTGTTGG+CGG + Chr2:1125837-1125856 None:intergenic 40.0%
AGCACCCAAGTAAACCTTTA+AGG + Chr2:1125059-1125078 None:intergenic 40.0%
AGTTTGCAAGATTGACTGAG+AGG + Chr2:1123837-1123856 None:intergenic 40.0%
ATTAAGGCCTGTTTGGACTT+TGG - Chr2:1123915-1123934 MsG0280006381.01.T01:CDS 40.0%
CATTGACACATGTCAAACAC+CGG - Chr2:1124319-1124338 MsG0280006381.01.T01:intron 40.0%
CTATGAACTATGAGTCTGTC+TGG + Chr2:1124228-1124247 None:intergenic 40.0%
CTTCCATAAGCTCTCTCAAA+CGG - Chr2:1124158-1124177 MsG0280006381.01.T01:intron 40.0%
CTTTACGGGATAAGATTTGG+TGG + Chr2:1125501-1125520 None:intergenic 40.0%
GAAGTTGAGATTAGGTACAC+TGG + Chr2:1126226-1126245 None:intergenic 40.0%
GTTGTGATTGTGGTAGATGA+GGG + Chr2:1123473-1123492 None:intergenic 40.0%
TAGAGAGAGATAGAGAGAGT+TGG + Chr2:1125773-1125792 None:intergenic 40.0%
TAGCACAAGGGCTTATGATA+TGG + Chr2:1123945-1123964 None:intergenic 40.0%
TAGTAGCAAGGTTGTGATTG+TGG + Chr2:1123483-1123502 None:intergenic 40.0%
TATCACCTAAAGCTTTGCTC+TGG - Chr2:1126699-1126718 MsG0280006381.01.T01:exon 40.0%
TCAATTTCACTTGTGTCACC+TGG + Chr2:1125236-1125255 None:intergenic 40.0%
TTGTGATTGTGGTAGATGAG+GGG + Chr2:1123472-1123491 None:intergenic 40.0%
! AACAAAAAACAAAGGGGCAC+TGG + Chr2:1124481-1124500 None:intergenic 40.0%
! AAGAAGATAGTGGTGAATGG+AGG + Chr2:1123417-1123436 None:intergenic 40.0%
! ACGGTCCAGATTCCATATTT+TGG + Chr2:1125206-1125225 None:intergenic 40.0%
! CAGAAGCATATACACACATC+AGG + Chr2:1126019-1126038 None:intergenic 40.0%
! CGGTCCAGATTCCATATTTT+GGG + Chr2:1125205-1125224 None:intergenic 40.0%
! GAATGATTTGTGGTGTTGAG+AGG + Chr2:1123379-1123398 None:intergenic 40.0%
! GCCACTTTCTTTGCATTTAG+AGG + Chr2:1125349-1125368 None:intergenic 40.0%
!! AAATGGTGGATCCATCTTAC+CGG - Chr2:1126366-1126385 MsG0280006381.01.T01:intron 40.0%
!! CTTTTAATTGAAGGCGTGTC+CGG + Chr2:1124341-1124360 None:intergenic 40.0%
!!! GGTAGTTTTAACCCCTTGAA+AGG + Chr2:1126453-1126472 None:intergenic 40.0%
AATAGGGCCTGCATATGGTA+AGG + Chr2:1123880-1123899 None:intergenic 45.0%
AGACCGTTTGAGAGAGCTTA+TGG + Chr2:1124164-1124183 None:intergenic 45.0%
AGGGCCCAAAATATGGAATC+TGG - Chr2:1125198-1125217 MsG0280006381.01.T01:intron 45.0%
AGGTCTCCTAAACTACCATC+TGG - Chr2:1124969-1124988 MsG0280006381.01.T01:intron 45.0%
AGGTGAAAACTTGGCTTAGG+TGG + Chr2:1125727-1125746 None:intergenic 45.0%
ATCCAAATAGGGCCTGCATA+TGG + Chr2:1123885-1123904 None:intergenic 45.0%
CAACCTGATCAACCCTTTGT+TGG + Chr2:1123642-1123661 None:intergenic 45.0%
CAATCAATGCTGACACTCTC+AGG - Chr2:1125178-1125197 MsG0280006381.01.T01:intron 45.0%
CACTCCTGAAGACCAACAAA+GGG - Chr2:1123627-1123646 MsG0280006381.01.T01:three_prime_UTR 45.0%
CACTTATGCTATGAGCACTC+AGG + Chr2:1124001-1124020 None:intergenic 45.0%
CAGTATATCATGCAGGAACC+CGG + Chr2:1126388-1126407 None:intergenic 45.0%
CATCTACGGACATAATCACG+TGG + Chr2:1124188-1124207 None:intergenic 45.0%
CGTGATTAGATGTGTCAGTG+CGG - Chr2:1124283-1124302 MsG0280006381.01.T01:intron 45.0%
GAGAGAGATAGAGAGAGTTG+GGG + Chr2:1125771-1125790 None:intergenic 45.0%
GGTTGTGATTGTGGTAGATG+AGG + Chr2:1123474-1123493 None:intergenic 45.0%
TACCATATGCAGGCCCTATT+TGG - Chr2:1123880-1123899 MsG0280006381.01.T01:intron 45.0%
TCAAAATGTACCAGGCCAGA+TGG + Chr2:1124987-1125006 None:intergenic 45.0%
TCCTCGATCAAGTGATGCAA+TGG + Chr2:1123599-1123618 None:intergenic 45.0%
TGGCAATCCAAAGTCCAAAC+AGG + Chr2:1123925-1123944 None:intergenic 45.0%
TGTGTCACCTGGTTGAAGAA+CGG + Chr2:1125225-1125244 None:intergenic 45.0%
! AGACCAACAAAGGGTTGATC+AGG - Chr2:1123636-1123655 MsG0280006381.01.T01:three_prime_UTR 45.0%
! AGGGTATCAAGAGGTGACAA+AGG - Chr2:1126326-1126345 MsG0280006381.01.T01:intron 45.0%
! GGTGGTTGGTGTATTCGTAT+AGG + Chr2:1125483-1125502 None:intergenic 45.0%
!! AATGGTGGATCCATCTTACC+GGG - Chr2:1126367-1126386 MsG0280006381.01.T01:intron 45.0%
!! ACGGGATAAGATTTGGTGGT+TGG + Chr2:1125497-1125516 None:intergenic 45.0%
!! TCAACCCTTTGTTGGTCTTC+AGG + Chr2:1123634-1123653 None:intergenic 45.0%
AAATCCAAAACAGGCCAGCC+CGG + Chr2:1124934-1124953 None:intergenic 50.0%
ACCAGGCCAGATGGTAGTTT+AGG + Chr2:1124978-1124997 None:intergenic 50.0%
ATCTGGACCGTTCTTCAACC+AGG - Chr2:1125215-1125234 MsG0280006381.01.T01:intron 50.0%
CACCTAAAGCTTTGCTCTGG+AGG - Chr2:1126702-1126721 MsG0280006381.01.T01:exon 50.0%
CACTCTCAGGGCCCAAAATA+TGG - Chr2:1125191-1125210 MsG0280006381.01.T01:intron 50.0%
CCACTCCTGAAGACCAACAA+AGG - Chr2:1123626-1123645 MsG0280006381.01.T01:three_prime_UTR 50.0%
GAGATAGAGAGAGTTGGGGT+AGG + Chr2:1125767-1125786 None:intergenic 50.0%
GCCATTGCATCACTTGATCG+AGG - Chr2:1123595-1123614 MsG0280006381.01.T01:three_prime_UTR 50.0%
TCCTAAACTACCATCTGGCC+TGG - Chr2:1124974-1124993 MsG0280006381.01.T01:intron 50.0%
TGCCTCCAGAGCAAAGCTTT+AGG + Chr2:1126707-1126726 None:intergenic 50.0%
! AGAATGTTGTGTTGGCGGTG+TGG + Chr2:1125832-1125851 None:intergenic 50.0%
! GACTTGAGAGGCTGCTTTGT+TGG + Chr2:1123776-1123795 None:intergenic 50.0%
!! CCTTTGTTGGTCTTCAGGAG+TGG + Chr2:1123629-1123648 None:intergenic 50.0%
!! TCGACTTCAGAAAGCGCTGA+CGG + Chr2:1126475-1126494 None:intergenic 50.0%
AGTTCACCACGAGCTGTGTC+AGG + Chr2:1126128-1126147 None:intergenic 55.0%
ATGAGCACTCAGGGCCTGTT+TGG + Chr2:1123991-1124010 None:intergenic 55.0%
CATGCAGGAACCCGGTAAGA+TGG + Chr2:1126380-1126399 None:intergenic 55.0%
!! CGACTTCAGAAAGCGCTGAC+GGG + Chr2:1126474-1126493 None:intergenic 55.0%
!! TGAGTTAACTTGCTGCCCGC+CGG - Chr2:1124906-1124925 MsG0280006381.01.T01:intron 55.0%
AAGGCTCCTGACACAGCTCG+TGG - Chr2:1126119-1126138 MsG0280006381.01.T01:intron 60.0%
GCTGTGTCAGGAGCCTTGAC+AGG + Chr2:1126116-1126135 None:intergenic 60.0%
AAAACAGGCCAGCCCGGCGC+CGG + Chr2:1124928-1124947 None:intergenic 70.0%
!! AACTTGCTGCCCGCCGGCGC+CGG - Chr2:1124912-1124931 MsG0280006381.01.T01:intron 75.0%
!!! GGCGCCGGGCTGGCCTGTTT+TGG - Chr2:1124927-1124946 MsG0280006381.01.T01:intron 75.0%
!! ACTTGCTGCCCGCCGGCGCC+GGG - Chr2:1124913-1124932 MsG0280006381.01.T01:intron 80.0%
!! ACAGGCCAGCCCGGCGCCGG+CGG + Chr2:1124925-1124944 None:intergenic 85.0%
!!! CAGGCCAGCCCGGCGCCGGC+GGG + Chr2:1124924-1124943 None:intergenic 90.0%
!! GCTGCCCGCCGGCGCCGGGC+TGG - Chr2:1124917-1124936 MsG0280006381.01.T01:intron 95.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1123326 1126736 1123326 ID=MsG0280006381.01;Name=MsG0280006381.01
Chr2 mRNA 1123326 1126736 1123326 ID=MsG0280006381.01.T01;Parent=MsG0280006381.01;Name=MsG0280006381.01.T01;_AED=0.37;_eAED=0.37;_QI=20|1|1|1|1|1|6|336|245
Chr2 exon 1123326 1123734 1123326 ID=MsG0280006381.01.T01:exon:1113;Parent=MsG0280006381.01.T01
Chr2 exon 1123885 1123952 1123885 ID=MsG0280006381.01.T01:exon:1112;Parent=MsG0280006381.01.T01
Chr2 exon 1124660 1124734 1124660 ID=MsG0280006381.01.T01:exon:1111;Parent=MsG0280006381.01.T01
Chr2 exon 1124826 1124921 1124826 ID=MsG0280006381.01.T01:exon:1110;Parent=MsG0280006381.01.T01
Chr2 exon 1126203 1126316 1126203 ID=MsG0280006381.01.T01:exon:1109;Parent=MsG0280006381.01.T01
Chr2 exon 1126405 1126736 1126405 ID=MsG0280006381.01.T01:exon:1108;Parent=MsG0280006381.01.T01
Chr2 five_prime_UTR 1126717 1126736 1126717 ID=MsG0280006381.01.T01:five_prime_utr;Parent=MsG0280006381.01.T01
Chr2 CDS 1126405 1126716 1126405 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 CDS 1126203 1126316 1126203 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 CDS 1124826 1124921 1124826 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 CDS 1124660 1124734 1124660 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 CDS 1123885 1123952 1123885 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 CDS 1123662 1123734 1123662 ID=MsG0280006381.01.T01:cds;Parent=MsG0280006381.01.T01
Chr2 three_prime_UTR 1123326 1123661 1123326 ID=MsG0280006381.01.T01:three_prime_utr;Parent=MsG0280006381.01.T01
Gene Sequence

>MsG0280006381.01.T01

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGATTGCACGCCAACTTGAAGCAGTTAATCCAACAAAGCAGCCTCTCAAGTCTAGTTTACTTGATGGAAAATGGGAGCTTATATACACTACCTCTCAGTCAATCTTGCAAACTAAGAGACCAAAGTTTTTGAGATCAGTAACAAATTATCAAGCAATCAATGCTGACACTCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACAGCAGATTTAACACCTCTAAATGCAAAGAAAGTGGCTGTGAAATTTGATACCTTCAAAATTGGAGGCTTAATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGGTATCAAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGCATGA

Protein sequence

>MsG0280006381.01.T01

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQIARQLEAVNPTKQPLKSSLLDGKWELIYTTSQSILQTKRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPA*