AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035584.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035584.01.T01 MTR_6g084620 93.678 174 8 2 1 174 1 171 2.58e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035584.01.T01 AT1G73885 58.824 85 33 2 91 173 95 179 1.94e-26 99.8

Find 49 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTAGATTGTAATTTA+TGG 0.123274 6:-108835483 None:intergenic
GGTATTTCAACCTCATTTCT+TGG 0.287691 6:-108833429 None:intergenic
GGAGAATGGTTGTGGATTCT+TGG 0.288850 6:+108833555 MsG0680035584.01.T01:CDS
AAAGAGCCTGATTTCTTTGA+AGG 0.327839 6:+108833504 MsG0680035584.01.T01:CDS
CAACAGTGGTTGTTGGTTGT+TGG 0.374252 6:-108833392 None:intergenic
TGGAATACTGTTGGGTTTGT+TGG 0.381813 6:+108833534 MsG0680035584.01.T01:CDS
ATGTCCGATTCAGATGTTTC+AGG 0.388886 6:-108835566 None:intergenic
TCCTCATCAACAGTGGTTGT+TGG 0.422081 6:-108833399 None:intergenic
GAAGATGGTAGGAGGGTGTA+GGG 0.430849 6:-108833303 None:intergenic
GCAGCCATAAATTACAATCT+AGG 0.431465 6:+108835479 MsG0680035584.01.T01:CDS
TGAGGACCTTCAAAGAAATC+AGG 0.443462 6:-108833510 None:intergenic
TGATTGCAGGTACTCGGTGG+TGG 0.443641 6:+108835452 MsG0680035584.01.T01:intron
AGAAGATGGTAGGAGGGTGT+AGG 0.446000 6:-108833304 None:intergenic
GGTTTGTTGGAGAATGGTTG+TGG 0.447045 6:+108833547 MsG0680035584.01.T01:CDS
TAAGGAAACTCCTGCATACA+AGG 0.456201 6:+108835514 MsG0680035584.01.T01:CDS
CTGTTGGGTTTGTTGGAGAA+TGG 0.461075 6:+108833541 MsG0680035584.01.T01:CDS
GGTGTAGGGTGTTGTTGTGG+TGG 0.465718 6:-108833289 None:intergenic
CTTCTTCTTGAAGAAGAAGA+TGG 0.477873 6:-108833318 None:intergenic
GAGGGTGTAGGGTGTTGTTG+TGG 0.482266 6:-108833292 None:intergenic
GTCCTCAGTGGAATACTGTT+GGG 0.482795 6:+108833526 MsG0680035584.01.T01:CDS
ACAACCTGAAACATCTGAAT+CGG 0.485907 6:+108835562 MsG0680035584.01.T01:CDS
TTGTGGTGGTCTTGTTGTAG+AGG 0.490468 6:-108833275 None:intergenic
GTAGCTACATGCGGTGGTGC+AGG 0.492658 6:+108833249 MsG0680035584.01.T01:CDS
AGGAGCTACCTCTGTAGGAT+TGG 0.496936 6:-108835597 None:intergenic
GACTGAGATTCCTTGTATGC+AGG 0.497420 6:-108835524 None:intergenic
CCAGGAGGTCTCCATTCAAA+AGG 0.515241 6:-108833474 None:intergenic
AAACTAGGAGCTACCTCTGT+AGG 0.526704 6:-108835602 None:intergenic
TTGAAGAAGAAGATGGTAGG+AGG 0.537808 6:-108833311 None:intergenic
AGATTTCTTCACGTTCAAGA+AGG 0.538426 6:+108833367 MsG0680035584.01.T01:CDS
GGTCCTCAGTGGAATACTGT+TGG 0.542352 6:+108833525 MsG0680035584.01.T01:CDS
TGAAGAAGAAGATGGTAGGA+GGG 0.542486 6:-108833310 None:intergenic
CAATCTTCATCAGAGTAAAA+CGG 0.547523 6:-108833450 None:intergenic
TCATCGTGATTGCAGGTACT+CGG 0.560112 6:+108835446 MsG0680035584.01.T01:intron
TGCACCACCGCATGTAGCTA+CGG 0.561836 6:-108833247 None:intergenic
GAATGGTTGTGGATTCTTGG+TGG 0.562063 6:+108833558 MsG0680035584.01.T01:CDS
ACCAACAACCACTGTTGATG+AGG 0.563474 6:+108833398 MsG0680035584.01.T01:CDS
TTCTATTTCCTCATCAACAG+TGG 0.566937 6:-108833406 None:intergenic
GATTGCAGGTACTCGGTGGT+GGG 0.579381 6:+108835453 MsG0680035584.01.T01:intron
TGGATGGACTAGTTCAAACT+AGG 0.580396 6:-108835617 None:intergenic
TCAGGCTCTTTGTAAGTACC+AGG 0.580767 6:-108833492 None:intergenic
GGAAATAGAACCAAGAAATG+AGG 0.583569 6:+108833419 MsG0680035584.01.T01:CDS
ATTTCTTTGAAGGTCCTCAG+TGG 0.623902 6:+108833514 MsG0680035584.01.T01:CDS
TTCTTGAAGAAGAAGATGGT+AGG 0.628028 6:-108833314 None:intergenic
GCATTCACCGTAGCTACATG+CGG 0.676586 6:+108833240 MsG0680035584.01.T01:CDS
TCGTGATTGCAGGTACTCGG+TGG 0.679621 6:+108835449 MsG0680035584.01.T01:intron
TTCACCGTAGCTACATGCGG+TGG 0.691064 6:+108833243 MsG0680035584.01.T01:CDS
GGCTCTTTGTAAGTACCAGG+AGG 0.691981 6:-108833489 None:intergenic
ATTCGAGTCCAATCCTACAG+AGG 0.715767 6:+108835589 MsG0680035584.01.T01:CDS
AACCCAACAGTATTCCACTG+AGG 0.795226 6:-108833528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATGAACTTGTTTT+AGG - Chr6:108834871-108834890 None:intergenic 15.0%
!!! TTTTAGTATAAGAAGAAATT+TGG + Chr6:108834253-108834272 MsG0680035584.01.T01:intron 15.0%
!! AAAAACTTCCTAAATAGATT+AGG + Chr6:108835264-108835283 MsG0680035584.01.T01:intron 20.0%
!! ACATTTAAATAACCTAGTTA+TGG - Chr6:108834938-108834957 None:intergenic 20.0%
!! ACTAGGTTATTTAAATGTTA+AGG + Chr6:108834940-108834959 MsG0680035584.01.T01:intron 20.0%
!! ATAATATTGCAAAACAATTG+TGG - Chr6:108835014-108835033 None:intergenic 20.0%
!!! ACTTAGTTCATATTTTGAAT+TGG - Chr6:108834462-108834481 None:intergenic 20.0%
!!! TAATCTATTTAGGAAGTTTT+TGG - Chr6:108835265-108835284 None:intergenic 20.0%
!!! TAATTTTATCTTCGAAAACT+TGG - Chr6:108835106-108835125 None:intergenic 20.0%
! AATAAGTTGTTTATCCAAAC+AGG - Chr6:108833725-108833744 None:intergenic 25.0%
! AGTTAAAATGTTTCGATACA+AGG + Chr6:108833828-108833847 MsG0680035584.01.T01:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - Chr6:108833724-108833743 None:intergenic 25.0%
! CATAAGTAACTAGAACAATT+GGG + Chr6:108834523-108834542 MsG0680035584.01.T01:intron 25.0%
! CGAAGATAAAATTACTTATG+TGG + Chr6:108835112-108835131 MsG0680035584.01.T01:intron 25.0%
! GATAGCTTCTTACAAAAAAA+AGG + Chr6:108833977-108833996 MsG0680035584.01.T01:intron 25.0%
! GTTAAAATGTTTCGATACAA+GGG + Chr6:108833829-108833848 MsG0680035584.01.T01:intron 25.0%
! TACTACTAGGTTTCTATATT+AGG - Chr6:108834208-108834227 None:intergenic 25.0%
! TAGTATAAGAAGAAATTTGG+AGG + Chr6:108834256-108834275 MsG0680035584.01.T01:intron 25.0%
! TCATAAGTAACTAGAACAAT+TGG + Chr6:108834522-108834541 MsG0680035584.01.T01:intron 25.0%
!! CTTGAGTATTAGAAGAATTT+TGG + Chr6:108833686-108833705 MsG0680035584.01.T01:intron 25.0%
!! GTATTTTGCGTGAATATTAA+TGG - Chr6:108834125-108834144 None:intergenic 25.0%
!! GTTTTCATAAGTATCTTGAA+GGG + Chr6:108834008-108834027 MsG0680035584.01.T01:intron 25.0%
!! TGTTTTCATAAGTATCTTGA+AGG + Chr6:108833959-108833978 MsG0680035584.01.T01:intron 25.0%
!!! AGTTAACTTTTGAGTTTATC+TGG + Chr6:108834286-108834305 MsG0680035584.01.T01:intron 25.0%
!!! TAGTTCATATTTTGAATTGG+CGG - Chr6:108834459-108834478 None:intergenic 25.0%
AGTTTCTGCTAATGAATTGT+AGG + Chr6:108834702-108834721 MsG0680035584.01.T01:intron 30.0%
CAAACATGCCTAATCTATTT+AGG - Chr6:108835275-108835294 None:intergenic 30.0%
CAATCTTCATCAGAGTAAAA+CGG - Chr6:108833453-108833472 None:intergenic 30.0%
CTTGTCATATATCAACATGT+AGG + Chr6:108835397-108835416 MsG0680035584.01.T01:intron 30.0%
GATCGAAATATTAGATCATG+TGG - Chr6:108834611-108834630 None:intergenic 30.0%
GCAGAGCAATAAAATTTGAA+AGG - Chr6:108835170-108835189 None:intergenic 30.0%
TACTTGTGAGACTATTTGTA+CGG - Chr6:108834068-108834087 None:intergenic 30.0%
TATAAGAAGAAATTTGGAGG+AGG + Chr6:108834775-108834794 MsG0680035584.01.T01:intron 30.0%
TCGCAAAATAGCAAAAGAAA+AGG - Chr6:108834669-108834688 None:intergenic 30.0%
TCTAATATTTCGATCCATCT+TGG + Chr6:108834616-108834635 MsG0680035584.01.T01:intron 30.0%
TGCTCCTAGATTGTAATTTA+TGG - Chr6:108835486-108835505 None:intergenic 30.0%
TGGTCAAATATAGTATCATG+CGG - Chr6:108834994-108835013 None:intergenic 30.0%
! GTTTGTTGAATTTAAGCACA+AGG + Chr6:108835203-108835222 MsG0680035584.01.T01:intron 30.0%
! TTTGTTTGTTGCTGAATTGT+TGG + Chr6:108833624-108833643 MsG0680035584.01.T01:intron 30.0%
AAAGAGCCTGATTTCTTTGA+AGG + Chr6:108833504-108833523 MsG0680035584.01.T01:CDS 35.0%
ACAACCTGAAACATCTGAAT+CGG + Chr6:108835562-108835581 MsG0680035584.01.T01:CDS 35.0%
ACTGCAGCACATAGATAAAT+GGG - Chr6:108834899-108834918 None:intergenic 35.0%
AGATTTCTTCACGTTCAAGA+AGG + Chr6:108833367-108833386 MsG0680035584.01.T01:CDS 35.0%
AGTAACTAGAACAATTGGGT+TGG + Chr6:108834527-108834546 MsG0680035584.01.T01:intron 35.0%
ATCTATGTGCTGCAGTATTA+AGG + Chr6:108834903-108834922 MsG0680035584.01.T01:intron 35.0%
CAAAATGCACACATACTACT+AGG - Chr6:108834221-108834240 None:intergenic 35.0%
CAACTTATTGTGCAGCTTAT+AGG + Chr6:108833736-108833755 MsG0680035584.01.T01:intron 35.0%
CACTTATCTAGGAACATGTT+TGG + Chr6:108834318-108834337 MsG0680035584.01.T01:intron 35.0%
CTTCTTCTTGAAGAAGAAGA+TGG - Chr6:108833321-108833340 None:intergenic 35.0%
CTTGAAGGGTTTGTGATATA+CGG + Chr6:108834022-108834041 MsG0680035584.01.T01:intron 35.0%
GCAGCCATAAATTACAATCT+AGG + Chr6:108835479-108835498 MsG0680035584.01.T01:CDS 35.0%
GCGTGAATATTAATGGTTGT+TGG - Chr6:108834118-108834137 None:intergenic 35.0%
GGAAATAGAACCAAGAAATG+AGG + Chr6:108833419-108833438 MsG0680035584.01.T01:CDS 35.0%
GGTATTTCAACCTCATTTCT+TGG - Chr6:108833432-108833451 None:intergenic 35.0%
TACTGCAGCACATAGATAAA+TGG - Chr6:108834900-108834919 None:intergenic 35.0%
TAGATCATGTGGCAACAATT+AGG - Chr6:108834600-108834619 None:intergenic 35.0%
TAGGAACATGTTTGGATTGA+CGG + Chr6:108834326-108834345 MsG0680035584.01.T01:intron 35.0%
TATAAGTTCATCGTGATTGC+AGG + Chr6:108835439-108835458 MsG0680035584.01.T01:intron 35.0%
TCCATTAAGCGTATCCATTA+CGG + Chr6:108834091-108834110 MsG0680035584.01.T01:intron 35.0%
TTCTATTTCCTCATCAACAG+TGG - Chr6:108833409-108833428 None:intergenic 35.0%
TTCTTGAAGAAGAAGATGGT+AGG - Chr6:108833317-108833336 None:intergenic 35.0%
TTGTACGGAGTTGCAAAAAA+TGG - Chr6:108834053-108834072 None:intergenic 35.0%
TTTGAACTTTGACGAAAGCA+CGG + Chr6:108834353-108834372 MsG0680035584.01.T01:intron 35.0%
! AGGTTTTTCATGCCATAACT+AGG + Chr6:108834923-108834942 MsG0680035584.01.T01:intron 35.0%
! CGTTTTACTCTGATGAAGAT+TGG + Chr6:108833451-108833470 MsG0680035584.01.T01:CDS 35.0%
!!! ATGAAGATTGGCCTTTTGAA+TGG + Chr6:108833463-108833482 MsG0680035584.01.T01:CDS 35.0%
!!! TCTAGGAGCATCAGATTTTA+AGG + Chr6:108835496-108835515 MsG0680035584.01.T01:CDS 35.0%
AGGAACATGTTTGGATTGAC+GGG + Chr6:108834327-108834346 MsG0680035584.01.T01:intron 40.0%
ATGTCCGATTCAGATGTTTC+AGG - Chr6:108835569-108835588 None:intergenic 40.0%
CCATTAAGCGTATCCATTAC+GGG + Chr6:108834092-108834111 MsG0680035584.01.T01:intron 40.0%
GATGAAGATATGACCCTGTT+TGG + Chr6:108833708-108833727 MsG0680035584.01.T01:intron 40.0%
GATGTCTCACAACGTTATTG+TGG + Chr6:108834968-108834987 MsG0680035584.01.T01:intron 40.0%
GGCGACATAATCACTTATCT+AGG + Chr6:108834307-108834326 MsG0680035584.01.T01:intron 40.0%
TAAGGAAACTCCTGCATACA+AGG + Chr6:108835514-108835533 MsG0680035584.01.T01:CDS 40.0%
TCTCTAGACAAGACATTCCT+TGG - Chr6:108835362-108835381 None:intergenic 40.0%
TGAAGAAGAAGATGGTAGGA+GGG - Chr6:108833313-108833332 None:intergenic 40.0%
TGAGGACCTTCAAAGAAATC+AGG - Chr6:108833513-108833532 None:intergenic 40.0%
TGGAATACTGTTGGGTTTGT+TGG + Chr6:108833534-108833553 MsG0680035584.01.T01:CDS 40.0%
TTGAAGAAGAAGATGGTAGG+AGG - Chr6:108833314-108833333 None:intergenic 40.0%
TTTCTTGCCAAAATTGCGCT+GGG + Chr6:108834411-108834430 MsG0680035584.01.T01:intron 40.0%
! ATTTCTTTGAAGGTCCTCAG+TGG + Chr6:108833514-108833533 MsG0680035584.01.T01:CDS 40.0%
! GTTTAAAGCAGCGTTTCATC+AGG - Chr6:108835041-108835060 None:intergenic 40.0%
!! CGTTTGTTTCTTTGAAGCCA+AGG + Chr6:108835342-108835361 MsG0680035584.01.T01:intron 40.0%
!! GATTCTTGGTGGTCTTTTTG+CGG + Chr6:108833569-108833588 MsG0680035584.01.T01:CDS 40.0%
AAACTAGGAGCTACCTCTGT+AGG - Chr6:108835605-108835624 None:intergenic 45.0%
AACCCAACAGTATTCCACTG+AGG - Chr6:108833531-108833550 None:intergenic 45.0%
ACCAACAACCACTGTTGATG+AGG + Chr6:108833398-108833417 MsG0680035584.01.T01:CDS 45.0%
ATGTTTCGATACAAGGGACC+TGG + Chr6:108833835-108833854 MsG0680035584.01.T01:intron 45.0%
ATTCGAGTCCAATCCTACAG+AGG + Chr6:108835589-108835608 MsG0680035584.01.T01:CDS 45.0%
CTCTCACGCTCAACACTATT+GGG - Chr6:108834147-108834166 None:intergenic 45.0%
GAATCGAACATGAGACCTTG+AGG - Chr6:108833894-108833913 None:intergenic 45.0%
GAATGGTTGTGGATTCTTGG+TGG + Chr6:108833558-108833577 MsG0680035584.01.T01:CDS 45.0%
GACTGAGATTCCTTGTATGC+AGG - Chr6:108835527-108835546 None:intergenic 45.0%
GGAACATGTTTGGATTGACG+GGG + Chr6:108834328-108834347 MsG0680035584.01.T01:intron 45.0%
GGAGAATGGTTGTGGATTCT+TGG + Chr6:108833555-108833574 MsG0680035584.01.T01:CDS 45.0%
GTCCTCAGTGGAATACTGTT+GGG + Chr6:108833526-108833545 MsG0680035584.01.T01:CDS 45.0%
GTCTCATGTTCGATTCTCTC+CGG + Chr6:108833898-108833917 MsG0680035584.01.T01:intron 45.0%
GTTTCTTGCCAAAATTGCGC+TGG + Chr6:108834410-108834429 MsG0680035584.01.T01:intron 45.0%
TAATGGTTGTTGGCCCGTAA+TGG - Chr6:108834108-108834127 None:intergenic 45.0%
TAGCCCACTCAAATTGACAC+CGG - Chr6:108833920-108833939 None:intergenic 45.0%
TCAGGCTCTTTGTAAGTACC+AGG - Chr6:108833495-108833514 None:intergenic 45.0%
TCATCGTGATTGCAGGTACT+CGG + Chr6:108835446-108835465 MsG0680035584.01.T01:intron 45.0%
TCCTCATCAACAGTGGTTGT+TGG - Chr6:108833402-108833421 None:intergenic 45.0%
TCGCGAAAACACAACCAAGA+TGG - Chr6:108834633-108834652 None:intergenic 45.0%
! CAACAGTGGTTGTTGGTTGT+TGG - Chr6:108833395-108833414 None:intergenic 45.0%
! CAATAGTGTTGAGCGTGAGA+GGG + Chr6:108834146-108834165 MsG0680035584.01.T01:intron 45.0%
! TCTCCGGTGTCAATTTGAGT+GGG + Chr6:108833914-108833933 MsG0680035584.01.T01:intron 45.0%
!! CCCGTAATGGATACGCTTAA+TGG - Chr6:108834095-108834114 None:intergenic 45.0%
!! CTGTTGGGTTTGTTGGAGAA+TGG + Chr6:108833541-108833560 MsG0680035584.01.T01:CDS 45.0%
!! GGTTTGTTGGAGAATGGTTG+TGG + Chr6:108833547-108833566 MsG0680035584.01.T01:CDS 45.0%
!! GTGGTATTGACTTGGGACTT+GGG + Chr6:108833857-108833876 MsG0680035584.01.T01:intron 45.0%
!! TTGTGGTGGTCTTGTTGTAG+AGG - Chr6:108833278-108833297 None:intergenic 45.0%
AATTGGCGGTGAGTCTGACA+TGG - Chr6:108834445-108834464 None:intergenic 50.0%
AGGAGCTACCTCTGTAGGAT+TGG - Chr6:108835600-108835619 None:intergenic 50.0%
AGTCCCAAGTCAATACCACC+AGG - Chr6:108833856-108833875 None:intergenic 50.0%
CCAGGAGGTCTCCATTCAAA+AGG - Chr6:108833477-108833496 None:intergenic 50.0%
CCTCTCACGCTCAACACTAT+TGG - Chr6:108834148-108834167 None:intergenic 50.0%
GCATTCACCGTAGCTACATG+CGG + Chr6:108833240-108833259 MsG0680035584.01.T01:CDS 50.0%
GGCTCTTTGTAAGTACCAGG+AGG - Chr6:108833492-108833511 None:intergenic 50.0%
GGTCCTCAGTGGAATACTGT+TGG + Chr6:108833525-108833544 MsG0680035584.01.T01:CDS 50.0%
TATGCGTGAAGGGGCTTACT+GGG + Chr6:108834171-108834190 MsG0680035584.01.T01:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG - Chr6:108833891-108833910 None:intergenic 50.0%
TTTCGATACAAGGGACCTGG+TGG + Chr6:108833838-108833857 MsG0680035584.01.T01:intron 50.0%
! AGAAGATGGTAGGAGGGTGT+AGG - Chr6:108833307-108833326 None:intergenic 50.0%
! CAGATGACCCAGCGCAATTT+TGG - Chr6:108834421-108834440 None:intergenic 50.0%
! CCAATAGTGTTGAGCGTGAG+AGG + Chr6:108834145-108834164 MsG0680035584.01.T01:intron 50.0%
! CCTTTTGAATGGAGACCTCC+TGG + Chr6:108833474-108833493 MsG0680035584.01.T01:CDS 50.0%
! CTCTCCGGTGTCAATTTGAG+TGG + Chr6:108833913-108833932 MsG0680035584.01.T01:intron 50.0%
! GAAGATGGTAGGAGGGTGTA+GGG - Chr6:108833306-108833325 None:intergenic 50.0%
! TGAGAGGGTGTATGCGTGAA+GGG + Chr6:108834161-108834180 MsG0680035584.01.T01:intron 50.0%
!! GGACCTGGTGGTATTGACTT+GGG + Chr6:108833850-108833869 MsG0680035584.01.T01:intron 50.0%
!! GGTGGTATTGACTTGGGACT+TGG + Chr6:108833856-108833875 MsG0680035584.01.T01:intron 50.0%
ATGCGTGAAGGGGCTTACTG+GGG + Chr6:108834172-108834191 MsG0680035584.01.T01:intron 55.0%
GTATGCGTGAAGGGGCTTAC+TGG + Chr6:108834170-108834189 MsG0680035584.01.T01:intron 55.0%
TCGTGATTGCAGGTACTCGG+TGG + Chr6:108835449-108835468 MsG0680035584.01.T01:intron 55.0%
TGCACCACCGCATGTAGCTA+CGG - Chr6:108833250-108833269 None:intergenic 55.0%
TTCACCGTAGCTACATGCGG+TGG + Chr6:108833243-108833262 MsG0680035584.01.T01:CDS 55.0%
! GAGAGGGTGTATGCGTGAAG+GGG + Chr6:108834162-108834181 MsG0680035584.01.T01:intron 55.0%
! GATTGCAGGTACTCGGTGGT+GGG + Chr6:108835453-108835472 MsG0680035584.01.T01:intron 55.0%
! GTGAGAGGGTGTATGCGTGA+AGG + Chr6:108834160-108834179 MsG0680035584.01.T01:intron 55.0%
! TGATTGCAGGTACTCGGTGG+TGG + Chr6:108835452-108835471 MsG0680035584.01.T01:intron 55.0%
!! GAGGGTGTAGGGTGTTGTTG+TGG - Chr6:108833295-108833314 None:intergenic 55.0%
!! GGGACCTGGTGGTATTGACT+TGG + Chr6:108833849-108833868 MsG0680035584.01.T01:intron 55.0%
!! GGTGTAGGGTGTTGTTGTGG+TGG - Chr6:108833292-108833311 None:intergenic 55.0%
GTAGCTACATGCGGTGGTGC+AGG + Chr6:108833249-108833268 MsG0680035584.01.T01:CDS 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + Chr6:108833876-108833895 MsG0680035584.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 108833237 108835631 108833237 ID=MsG0680035584.01;Name=MsG0680035584.01
Chr6 mRNA 108833237 108835631 108833237 ID=MsG0680035584.01.T01;Parent=MsG0680035584.01;Name=MsG0680035584.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|174
Chr6 exon 108833237 108833590 108833237 ID=MsG0680035584.01.T01:exon:8365;Parent=MsG0680035584.01.T01
Chr6 exon 108835461 108835631 108835461 ID=MsG0680035584.01.T01:exon:8366;Parent=MsG0680035584.01.T01
Chr6 CDS 108833237 108833590 108833237 ID=MsG0680035584.01.T01:cds;Parent=MsG0680035584.01.T01
Chr6 CDS 108835461 108835631 108835461 ID=MsG0680035584.01.T01:cds;Parent=MsG0680035584.01.T01
Gene Sequence

>MsG0680035584.01.T01

ATGGCATTCACCGTAGCTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCACAACAACACCCTACACCCTCCTACCATCTTCTTCTTCAAGAAGAAGAACACTTCACATAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAATAGAACCAAGAAATGAGGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTACTCGGTGGTGGGTATGCAGCCATAAATTACAATCTAGGAGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAGTCTCAAGAACTTTTAGAACAACCTGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>MsG0680035584.01.T01

MAFTVATCGGAGILYNKTTTTTPYTLLPSSSSRRRTLHIVSAKKISSRSRRNQQPTTTVDEEIEPRNEVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN*