AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022687.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022687.01.T01 MTR_4g094295 94.255 470 27 0 1 470 1 470 0.0 875
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022687.01.T01 AT3G09580 65.895 475 152 4 4 469 3 476 0.0 607

Find 111 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGGTGCTTTGGTTTC+TGG 0.089919 4:+75468759 MsG0480022687.01.T01:CDS
GATTATAATGACGCCGGTTT+TGG 0.217992 4:-75467542 None:intergenic
GGATTGAATTTGAATGGTTT+TGG 0.265688 4:-75467478 None:intergenic
AACCTCGCCGCTAACTGTTC+TGG 0.286582 4:-75468153 None:intergenic
GGCAAGTTGGGAGGAGCATT+TGG 0.286950 4:-75467500 None:intergenic
TTGACTTCAGCTACATTTGA+TGG 0.298680 4:+75468744 MsG0480022687.01.T01:CDS
GGAAGCATTTGAGAACTTAT+AGG 0.302531 4:+75468631 MsG0480022687.01.T01:CDS
GGAGGAGGAAAGGGATGTTT+TGG 0.303182 4:-75467609 None:intergenic
TGGAACCGATAGGGTTAGTT+AGG 0.316739 4:-75467861 None:intergenic
AGCTACATTTGATGGTGCTT+TGG 0.317480 4:+75468752 MsG0480022687.01.T01:CDS
CTTGAAGTTGTTTCGAGCTC+TGG 0.323515 4:-75468057 None:intergenic
AAGGTGGTTCAAGAACTTTC+AGG 0.328498 4:+75468579 MsG0480022687.01.T01:CDS
GAAGAAGATGGAGGGGTTTG+TGG 0.330111 4:-75467446 None:intergenic
ACAAACCCGGTTCAATTGTT+TGG 0.340745 4:-75468704 None:intergenic
TTGGTTTCAGTATCATTGAT+TGG 0.342124 4:+75468519 MsG0480022687.01.T01:CDS
GGCTCTGGTTAAATTATTAC+CGG 0.353638 4:+75468311 MsG0480022687.01.T01:CDS
CAAGAACTTTCAGGTTGGTT+TGG 0.360910 4:+75468588 MsG0480022687.01.T01:CDS
CATTTGGGATTGAATTTGAA+TGG 0.363376 4:-75467484 None:intergenic
TCACGGACCGGGATTTGATC+AGG 0.365738 4:-75468399 None:intergenic
GATCAGCGACGGTGTGGAAT+TGG 0.372588 4:-75467807 None:intergenic
TGGAGGGGTTTGTGGAAGGG+AGG 0.391557 4:-75467438 None:intergenic
GATAAGCGGTGATGAAGATT+TGG 0.402664 4:-75467705 None:intergenic
GCAAGTTGGGAGGAGCATTT+GGG 0.408251 4:-75467499 None:intergenic
TGGAGAAGAAGGGAAGAAGA+TGG 0.415007 4:-75467458 None:intergenic
TTCGTAGGTGGACACTGATT+AGG 0.415330 4:-75468669 None:intergenic
TTCTTTAGTAAGTCAATTGT+GGG 0.416904 4:-75467967 None:intergenic
GATCGTTGCCGTTGAAGAAC+CGG 0.417014 4:+75468290 MsG0480022687.01.T01:CDS
ATCATTGATTGGGTTATTTG+AGG 0.423123 4:+75468530 MsG0480022687.01.T01:CDS
TGCCGTTGAAGAACCGGCTC+TGG 0.424491 4:+75468296 MsG0480022687.01.T01:CDS
GATGAGTAATTTATCGAAGA+TGG 0.424531 4:-75467881 None:intergenic
TGGTTTCAGTATCATTGATT+GGG 0.425020 4:+75468520 MsG0480022687.01.T01:CDS
ATCTTCAAGTGTCTTGCTCT+CGG 0.425179 4:+75468093 MsG0480022687.01.T01:CDS
CAACCTCACGCTTGGCGAAT+CGG 0.425285 4:-75468232 None:intergenic
AGATGGAGGGGTTTGTGGAA+GGG 0.427702 4:-75467441 None:intergenic
TTGTTTGGTGGTGCATATGA+TGG 0.430727 4:-75468492 None:intergenic
ACTGAAACCAATGCCTTGTT+TGG 0.439459 4:-75468507 None:intergenic
CTTCTTTAGTAAGTCAATTG+TGG 0.443753 4:-75467968 None:intergenic
AAAACCGGCGTCATTATAAT+CGG 0.443912 4:+75467544 MsG0480022687.01.T01:CDS
AAGATGGAGGGGTTTGTGGA+AGG 0.448287 4:-75467442 None:intergenic
TTAAATGATAGAGCCTTCAT+TGG 0.454783 4:+75468804 MsG0480022687.01.T01:CDS
ATGGGTTGCAGCAGCTAAGC+CGG 0.461071 4:-75467578 None:intergenic
TGATGAAGAGTTAGTTGTTA+AGG 0.461993 4:+75468560 MsG0480022687.01.T01:CDS
TTGATTCGAGGAGGAGGAAA+GGG 0.462211 4:-75467618 None:intergenic
CCCTCCTCACTCCCCAAAAC+CGG 0.465238 4:+75467529 MsG0480022687.01.T01:CDS
AGGTTGGTTTGGAGATAAGA+TGG 0.465657 4:+75468599 MsG0480022687.01.T01:CDS
GGTTTAAGGATTGGTAATTG+AGG 0.468393 4:-75467744 None:intergenic
CTCATCGGAACCACCAGAAT+CGG 0.475119 4:+75467898 MsG0480022687.01.T01:CDS
AAGCAAACCGTACTCCGAAC+CGG 0.475686 4:-75468360 None:intergenic
GAGATAAGATGGTAAAAGAA+TGG 0.476325 4:+75468610 MsG0480022687.01.T01:CDS
ATAATCGGCGCTGGCCTCGC+CGG 0.487500 4:+75467559 MsG0480022687.01.T01:CDS
GTTGATTCGAGGAGGAGGAA+AGG 0.496265 4:-75467619 None:intergenic
GGTAATAATTTAACCAGAGC+CGG 0.498362 4:-75468309 None:intergenic
AGAAGAAGGGAAGAAGATGG+AGG 0.502056 4:-75467455 None:intergenic
GAAGAAGGGAAGAAGATGGA+GGG 0.507037 4:-75467454 None:intergenic
GGAGGGGTTTGTGGAAGGGA+GGG 0.528867 4:-75467437 None:intergenic
AACAGAACTGGATCACGGAC+CGG 0.529245 4:-75468411 None:intergenic
CGACGGCGTTGGTTGATTCG+AGG 0.529349 4:-75467630 None:intergenic
ACAGAACTGGATCACGGACC+GGG 0.531237 4:-75468410 None:intergenic
ATTGACTTACTAAAGAAGCT+AGG 0.533008 4:+75467973 MsG0480022687.01.T01:CDS
GACGCGACCACCGACGGCGT+TGG 0.533208 4:-75467641 None:intergenic
CGGGATTTGATCAGGGTTCG+CGG 0.537343 4:-75468391 None:intergenic
GGAACCGATAGGGTTAGTTA+GGG 0.540536 4:-75467860 None:intergenic
GAAACCAATGCCTTGTTTGG+TGG 0.542262 4:-75468504 None:intergenic
GGCGTCATTATAATCGGCGC+TGG 0.544068 4:+75467550 MsG0480022687.01.T01:CDS
AACCAGAGCCGGTTCTTCAA+CGG 0.547514 4:-75468298 None:intergenic
ATGAAGCAATTAGCCAATGA+AGG 0.551327 4:-75468817 None:intergenic
TCTCGGCGAAAATACTCTTC+CGG 0.553572 4:+75468110 MsG0480022687.01.T01:CDS
TGCGGTAAGAATTTGTTCGT+CGG 0.557189 4:-75467935 None:intergenic
ATCTTCGATAAATTACTCAT+CGG 0.559784 4:+75467883 MsG0480022687.01.T01:CDS
GGTGCGGACGCGACCACCGA+CGG 0.559991 4:-75467647 None:intergenic
GTCCGCACCGACATTGTCGA+CGG 0.561381 4:+75467661 MsG0480022687.01.T01:CDS
AGCGATTCCAGAACAGTTAG+CGG 0.561707 4:+75468146 MsG0480022687.01.T01:CDS
AAGAAGGGAAGAAGATGGAG+GGG 0.562199 4:-75467453 None:intergenic
ATCATATGCACCACCAAACA+AGG 0.563468 4:+75468494 MsG0480022687.01.T01:CDS
TGCACCACCAAACAAGGCAT+TGG 0.563916 4:+75468500 MsG0480022687.01.T01:CDS
CGTTGGTTGATTCGAGGAGG+AGG 0.566780 4:-75467624 None:intergenic
ATGGTGCTTTGGTTTCTGGT+AGG 0.567681 4:+75468763 MsG0480022687.01.T01:CDS
TATCGAAGATGGAACCGATA+GGG 0.569411 4:-75467870 None:intergenic
CGCGAACCCTGATCAAATCC+CGG 0.582191 4:+75468392 MsG0480022687.01.T01:CDS
ATCGCTGATATACCTTTCGC+CGG 0.583538 4:-75468129 None:intergenic
TGAAGAGTTAGTTGTTAAGG+TGG 0.584463 4:+75468563 MsG0480022687.01.T01:CDS
GAAAATACTCTTCCGGCGAA+AGG 0.584916 4:+75468117 MsG0480022687.01.T01:CDS
CACGGACCGGGATTTGATCA+GGG 0.585561 4:-75468398 None:intergenic
AGATTTGGAAGCCACGGTCA+AGG 0.586167 4:-75467690 None:intergenic
ATCGGAGCCGTTAAAATCAA+CGG 0.589529 4:-75468214 None:intergenic
CCAAGCGTGAGGTTGCAAAA+CGG 0.598423 4:+75468240 MsG0480022687.01.T01:CDS
CTCGAATCAACCAACGCCGT+CGG 0.602679 4:+75467631 MsG0480022687.01.T01:CDS
TGATGAAGATTTGGAAGCCA+CGG 0.605471 4:-75467696 None:intergenic
GAGGAAGCCGTCGACAATGT+CGG 0.609084 4:-75467668 None:intergenic
GGTGCTAAAATCTTCTACAA+CGG 0.611207 4:+75467784 MsG0480022687.01.T01:CDS
TTATCGAAGATGGAACCGAT+AGG 0.611986 4:-75467871 None:intergenic
AAATCCCTAACTAACCCTAT+CGG 0.614614 4:+75467856 MsG0480022687.01.T01:CDS
GCTCCGATTCGCCAAGCGTG+AGG 0.615755 4:+75468229 MsG0480022687.01.T01:CDS
TGTGAGGACACCGATTCTGG+TGG 0.616357 4:-75467908 None:intergenic
GACGGCTTCCTCCTTGACCG+TGG 0.618515 4:+75467679 MsG0480022687.01.T01:CDS
GCTCTGGTTAAATTATTACC+GGG 0.621879 4:+75468312 MsG0480022687.01.T01:CDS
GAATCAACCAACGCCGTCGG+TGG 0.624591 4:+75467634 MsG0480022687.01.T01:CDS
TGGTTCAAGAACTTTCAGGT+TGG 0.626210 4:+75468583 MsG0480022687.01.T01:CDS
GAACCGGGTTTGTATTTGTG+TGG 0.629262 4:+75468714 MsG0480022687.01.T01:CDS
TTCAGCAAGATTGAATCTGA+CGG 0.647901 4:-75468177 None:intergenic
GAGTCGAAGAAATGGCGAAG+TGG 0.653341 4:-75467829 None:intergenic
CGGCGTTGGTTGATTCGAGG+AGG 0.654941 4:-75467627 None:intergenic
AATTGTGGGAACTTCTTCTG+CGG 0.656744 4:-75467953 None:intergenic
TCACCACACAAATACAAACC+CGG 0.658204 4:-75468717 None:intergenic
TTCCAGAACAGTTAGCGGCG+AGG 0.659731 4:+75468151 MsG0480022687.01.T01:CDS
ATGGCGAAGTGGATCAGCGA+CGG 0.660659 4:-75467818 None:intergenic
AGCGCCGATTATAATGACGC+CGG 0.671553 4:-75467548 None:intergenic
GAAGTGGATCAGCGACGGTG+TGG 0.679688 4:-75467813 None:intergenic
TTGCAGCAGCTAAGCCGGCG+AGG 0.684777 4:-75467573 None:intergenic
TTTGGAAGCCACGGTCAAGG+AGG 0.708323 4:-75467687 None:intergenic
AGCCGTCGACAATGTCGGTG+CGG 0.709135 4:-75467663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCTTCGATAAATTACTCAT+CGG + Chr4:75467883-75467902 MsG0480022687.01.T01:CDS 25.0%
! TTCTTTAGTAAGTCAATTGT+GGG - Chr4:75467970-75467989 None:intergenic 25.0%
AAAAACCAAACAATTGAACC+GGG + Chr4:75468699-75468718 MsG0480022687.01.T01:CDS 30.0%
CTTCTTTAGTAAGTCAATTG+TGG - Chr4:75467971-75467990 None:intergenic 30.0%
GAAAAACCAAACAATTGAAC+CGG + Chr4:75468698-75468717 MsG0480022687.01.T01:CDS 30.0%
GAGATAAGATGGTAAAAGAA+TGG + Chr4:75468610-75468629 MsG0480022687.01.T01:CDS 30.0%
GATGAGTAATTTATCGAAGA+TGG - Chr4:75467884-75467903 None:intergenic 30.0%
TGATGAAGAGTTAGTTGTTA+AGG + Chr4:75468560-75468579 MsG0480022687.01.T01:CDS 30.0%
TTAAAAACAGAACTGGATCA+CGG - Chr4:75468419-75468438 None:intergenic 30.0%
TTAAATGATAGAGCCTTCAT+TGG + Chr4:75468804-75468823 MsG0480022687.01.T01:CDS 30.0%
TTGGTTTCAGTATCATTGAT+TGG + Chr4:75468519-75468538 MsG0480022687.01.T01:CDS 30.0%
! ATCATTGATTGGGTTATTTG+AGG + Chr4:75468530-75468549 MsG0480022687.01.T01:CDS 30.0%
! ATTGACTTACTAAAGAAGCT+AGG + Chr4:75467973-75467992 MsG0480022687.01.T01:CDS 30.0%
! CATTTGGGATTGAATTTGAA+TGG - Chr4:75467487-75467506 None:intergenic 30.0%
! GGATTGAATTTGAATGGTTT+TGG - Chr4:75467481-75467500 None:intergenic 30.0%
! TGGTTTCAGTATCATTGATT+GGG + Chr4:75468520-75468539 MsG0480022687.01.T01:CDS 30.0%
! TGGTTTTTCTTCAAATTCGT+AGG - Chr4:75468687-75468706 None:intergenic 30.0%
! TTTTTCTTCAAATTCGTAGG+TGG - Chr4:75468684-75468703 None:intergenic 30.0%
!! ATTTTTGGAGGTTTAAGGAT+TGG - Chr4:75467756-75467775 None:intergenic 30.0%
!! GTAGAATTTTTGGAGGTTTA+AGG - Chr4:75467761-75467780 None:intergenic 30.0%
!!! AGTTCTGTTTTTAAACGGTT+CGG + Chr4:75468425-75468444 MsG0480022687.01.T01:CDS 30.0%
!!! GATCCAGTTCTGTTTTTAAA+CGG + Chr4:75468420-75468439 MsG0480022687.01.T01:CDS 30.0%
AAAACCGGCGTCATTATAAT+CGG + Chr4:75467544-75467563 MsG0480022687.01.T01:CDS 35.0%
AAACCCGGTTTACAAAAAAC+CGG + Chr4:75468341-75468360 MsG0480022687.01.T01:CDS 35.0%
AAATCCCTAACTAACCCTAT+CGG + Chr4:75467856-75467875 MsG0480022687.01.T01:CDS 35.0%
AACCTCCAAAAATTCTACTC+AGG + Chr4:75467763-75467782 MsG0480022687.01.T01:CDS 35.0%
GAACCGTTTAAAAACAGAAC+TGG - Chr4:75468426-75468445 None:intergenic 35.0%
GCTCTGGTTAAATTATTACC+GGG + Chr4:75468312-75468331 MsG0480022687.01.T01:CDS 35.0%
GGTAATAATTTAACCAGAGC+CGG - Chr4:75468312-75468331 None:intergenic 35.0%
GGTGCTAAAATCTTCTACAA+CGG + Chr4:75467784-75467803 MsG0480022687.01.T01:CDS 35.0%
TGAAGAGTTAGTTGTTAAGG+TGG + Chr4:75468563-75468582 MsG0480022687.01.T01:CDS 35.0%
TTCAGCAAGATTGAATCTGA+CGG - Chr4:75468180-75468199 None:intergenic 35.0%
TTGACTTCAGCTACATTTGA+TGG + Chr4:75468744-75468763 MsG0480022687.01.T01:CDS 35.0%
! GGCTCTGGTTAAATTATTAC+CGG + Chr4:75468311-75468330 MsG0480022687.01.T01:CDS 35.0%
! GGTTTAAGGATTGGTAATTG+AGG - Chr4:75467747-75467766 None:intergenic 35.0%
! TAGCACCTGAGTAGAATTTT+TGG - Chr4:75467771-75467790 None:intergenic 35.0%
!! AGATTCTTCCGACCATTTTT+CGG + Chr4:75468018-75468037 MsG0480022687.01.T01:CDS 35.0%
!! GGAAGCATTTGAGAACTTAT+AGG + Chr4:75468631-75468650 MsG0480022687.01.T01:CDS 35.0%
!! TTTTTAAACGGTTCGGGTAA+AGG + Chr4:75468432-75468451 MsG0480022687.01.T01:CDS 35.0%
!! TTTTTGAGCTTCTGGATAAG+CGG - Chr4:75467722-75467741 None:intergenic 35.0%
!!! ATTATAATGACGCCGGTTTT+GGG - Chr4:75467544-75467563 None:intergenic 35.0%
!!! GCAGTTTCCGTTGATTTTAA+CGG + Chr4:75468207-75468226 MsG0480022687.01.T01:CDS 35.0%
!!! GTTCTGTTTTTAAACGGTTC+GGG + Chr4:75468426-75468445 MsG0480022687.01.T01:CDS 35.0%
!!! TGAATGGTTTTGGAGAAGAA+GGG - Chr4:75467471-75467490 None:intergenic 35.0%
!!! TTGAATGGTTTTGGAGAAGA+AGG - Chr4:75467472-75467491 None:intergenic 35.0%
AAGAAGATACCGCCGAAAAA+TGG - Chr4:75468033-75468052 None:intergenic 40.0%
AAGGTGGTTCAAGAACTTTC+AGG + Chr4:75468579-75468598 MsG0480022687.01.T01:CDS 40.0%
AATTGTGGGAACTTCTTCTG+CGG - Chr4:75467956-75467975 None:intergenic 40.0%
ACAAACCCGGTTCAATTGTT+TGG - Chr4:75468707-75468726 None:intergenic 40.0%
ATCATATGCACCACCAAACA+AGG + Chr4:75468494-75468513 MsG0480022687.01.T01:CDS 40.0%
ATCGGAGCCGTTAAAATCAA+CGG - Chr4:75468217-75468236 None:intergenic 40.0%
ATCTTCAAGTGTCTTGCTCT+CGG + Chr4:75468093-75468112 MsG0480022687.01.T01:CDS 40.0%
ATTACCGGGAAAGAAAAACC+CGG + Chr4:75468326-75468345 MsG0480022687.01.T01:CDS 40.0%
CGGTTTACAAAAAACCGGTT+CGG + Chr4:75468346-75468365 MsG0480022687.01.T01:CDS 40.0%
GATAAGCGGTGATGAAGATT+TGG - Chr4:75467708-75467727 None:intergenic 40.0%
TATCGAAGATGGAACCGATA+GGG - Chr4:75467873-75467892 None:intergenic 40.0%
TCACCACACAAATACAAACC+CGG - Chr4:75468720-75468739 None:intergenic 40.0%
TGATGAAGATTTGGAAGCCA+CGG - Chr4:75467699-75467718 None:intergenic 40.0%
TTATCGAAGATGGAACCGAT+AGG - Chr4:75467874-75467893 None:intergenic 40.0%
! ACTGAAACCAATGCCTTGTT+TGG - Chr4:75468510-75468529 None:intergenic 40.0%
! ATTTTGCGGAGTCGAAGAAA+TGG - Chr4:75467840-75467859 None:intergenic 40.0%
! TAAACCGGGTTTTTCTTTCC+CGG - Chr4:75468333-75468352 None:intergenic 40.0%
! TGCGGTAAGAATTTGTTCGT+CGG - Chr4:75467938-75467957 None:intergenic 40.0%
! TGGTTCAAGAACTTTCAGGT+TGG + Chr4:75468583-75468602 MsG0480022687.01.T01:CDS 40.0%
! TTTGTTCGTCGGATTTTGTG+AGG - Chr4:75467927-75467946 None:intergenic 40.0%
!! AGCTACATTTGATGGTGCTT+TGG + Chr4:75468752-75468771 MsG0480022687.01.T01:CDS 40.0%
!! AGGTTGGTTTGGAGATAAGA+TGG + Chr4:75468599-75468618 MsG0480022687.01.T01:CDS 40.0%
!! CAAGAACTTTCAGGTTGGTT+TGG + Chr4:75468588-75468607 MsG0480022687.01.T01:CDS 40.0%
!! CACCTGAGTAGAATTTTTGG+AGG - Chr4:75467768-75467787 None:intergenic 40.0%
!! TTGAGGAGTTTTTGAGCTTC+TGG - Chr4:75467730-75467749 None:intergenic 40.0%
!! TTGTTTGGTGGTGCATATGA+TGG - Chr4:75468495-75468514 None:intergenic 40.0%
!! TTTGATGGTGCTTTGGTTTC+TGG + Chr4:75468759-75468778 MsG0480022687.01.T01:CDS 40.0%
!!! AGGGTTAGTTAGGGATTTTG+CGG - Chr4:75467854-75467873 None:intergenic 40.0%
!!! CGAACCGGTTTTTTGTAAAC+CGG - Chr4:75468348-75468367 None:intergenic 40.0%
!!! GAACCGGTTTTTTGTAAACC+GGG - Chr4:75468347-75468366 None:intergenic 40.0%
!!! GATGTTTTGGGAGTTGAGAT+GGG - Chr4:75467599-75467618 None:intergenic 40.0%
!!! GATTATAATGACGCCGGTTT+TGG - Chr4:75467545-75467564 None:intergenic 40.0%
!!! TTATAATGACGCCGGTTTTG+GGG - Chr4:75467543-75467562 None:intergenic 40.0%
AAGAAGGGAAGAAGATGGAG+GGG - Chr4:75467456-75467475 None:intergenic 45.0%
AGAAGAAGGGAAGAAGATGG+AGG - Chr4:75467458-75467477 None:intergenic 45.0%
AGATACCGCCGAAAAATGGT+CGG - Chr4:75468029-75468048 None:intergenic 45.0%
AGCGATTCCAGAACAGTTAG+CGG + Chr4:75468146-75468165 MsG0480022687.01.T01:CDS 45.0%
ATCGCTGATATACCTTTCGC+CGG - Chr4:75468132-75468151 None:intergenic 45.0%
GAAAATACTCTTCCGGCGAA+AGG + Chr4:75468117-75468136 MsG0480022687.01.T01:CDS 45.0%
GAACCGGGTTTGTATTTGTG+TGG + Chr4:75468714-75468733 MsG0480022687.01.T01:CDS 45.0%
GAAGAAGGGAAGAAGATGGA+GGG - Chr4:75467457-75467476 None:intergenic 45.0%
TCTCGGCGAAAATACTCTTC+CGG + Chr4:75468110-75468129 MsG0480022687.01.T01:CDS 45.0%
TGGAGAAGAAGGGAAGAAGA+TGG - Chr4:75467461-75467480 None:intergenic 45.0%
! CTTGAAGTTGTTTCGAGCTC+TGG - Chr4:75468060-75468079 None:intergenic 45.0%
! GAGGAGGAAAGGGATGTTTT+GGG - Chr4:75467611-75467630 None:intergenic 45.0%
! TTCGTAGGTGGACACTGATT+AGG - Chr4:75468672-75468691 None:intergenic 45.0%
! TTGATTCGAGGAGGAGGAAA+GGG - Chr4:75467621-75467640 None:intergenic 45.0%
!! ATGGTGCTTTGGTTTCTGGT+AGG + Chr4:75468763-75468782 MsG0480022687.01.T01:CDS 45.0%
!! CAAAAAACCGGTTCGGAGTA+CGG + Chr4:75468353-75468372 MsG0480022687.01.T01:CDS 45.0%
!! GAAACCAATGCCTTGTTTGG+TGG - Chr4:75468507-75468526 None:intergenic 45.0%
!! GGAACCGATAGGGTTAGTTA+GGG - Chr4:75467863-75467882 None:intergenic 45.0%
!! TGGAACCGATAGGGTTAGTT+AGG - Chr4:75467864-75467883 None:intergenic 45.0%
!! TTCTTCCGACCATTTTTCGG+CGG + Chr4:75468021-75468040 MsG0480022687.01.T01:CDS 45.0%
!!! GGATGTTTTGGGAGTTGAGA+TGG - Chr4:75467600-75467619 None:intergenic 45.0%
!!! TTTTGTGAGGACACCGATTC+TGG - Chr4:75467914-75467933 None:intergenic 45.0%
AACAGAACTGGATCACGGAC+CGG - Chr4:75468414-75468433 None:intergenic 50.0%
AAGATGGAGGGGTTTGTGGA+AGG - Chr4:75467445-75467464 None:intergenic 50.0%
AAGCAAACCGTACTCCGAAC+CGG - Chr4:75468363-75468382 None:intergenic 50.0%
AGATGGAGGGGTTTGTGGAA+GGG - Chr4:75467444-75467463 None:intergenic 50.0%
AGATTTGGAAGCCACGGTCA+AGG - Chr4:75467693-75467712 None:intergenic 50.0%
CCAAGCGTGAGGTTGCAAAA+CGG + Chr4:75468240-75468259 MsG0480022687.01.T01:CDS 50.0%
CTCATCGGAACCACCAGAAT+CGG + Chr4:75467898-75467917 MsG0480022687.01.T01:CDS 50.0%
GAAGAAGATGGAGGGGTTTG+TGG - Chr4:75467449-75467468 None:intergenic 50.0%
GAGTCGAAGAAATGGCGAAG+TGG - Chr4:75467832-75467851 None:intergenic 50.0%
GATCGTTGCCGTTGAAGAAC+CGG + Chr4:75468290-75468309 MsG0480022687.01.T01:CDS 50.0%
TGCACCACCAAACAAGGCAT+TGG + Chr4:75468500-75468519 MsG0480022687.01.T01:CDS 50.0%
! AACCAGAGCCGGTTCTTCAA+CGG - Chr4:75468301-75468320 None:intergenic 50.0%
! GGAGGAGGAAAGGGATGTTT+TGG - Chr4:75467612-75467631 None:intergenic 50.0%
!! AGCGCCGATTATAATGACGC+CGG - Chr4:75467551-75467570 None:intergenic 50.0%
!! GACGTTTTGAGTAGCGAGCT+AGG + Chr4:75468264-75468283 MsG0480022687.01.T01:CDS 50.0%
!! GCAAGTTGGGAGGAGCATTT+GGG - Chr4:75467502-75467521 None:intergenic 50.0%
!! GTTGATTCGAGGAGGAGGAA+AGG - Chr4:75467622-75467641 None:intergenic 50.0%
AACCTCGCCGCTAACTGTTC+TGG - Chr4:75468156-75468175 None:intergenic 55.0%
ACAGAACTGGATCACGGACC+GGG - Chr4:75468413-75468432 None:intergenic 55.0%
ATGGCGAAGTGGATCAGCGA+CGG - Chr4:75467821-75467840 None:intergenic 55.0%
CAACCTCACGCTTGGCGAAT+CGG - Chr4:75468235-75468254 None:intergenic 55.0%
CACGGACCGGGATTTGATCA+GGG - Chr4:75468401-75468420 None:intergenic 55.0%
CGCGAACCCTGATCAAATCC+CGG + Chr4:75468392-75468411 MsG0480022687.01.T01:CDS 55.0%
CGGGATTTGATCAGGGTTCG+CGG - Chr4:75468394-75468413 None:intergenic 55.0%
CTCGAATCAACCAACGCCGT+CGG + Chr4:75467631-75467650 MsG0480022687.01.T01:CDS 55.0%
GAGGAAGCCGTCGACAATGT+CGG - Chr4:75467671-75467690 None:intergenic 55.0%
GATCAGCGACGGTGTGGAAT+TGG - Chr4:75467810-75467829 None:intergenic 55.0%
GGCGTCATTATAATCGGCGC+TGG + Chr4:75467550-75467569 MsG0480022687.01.T01:CDS 55.0%
TCACGGACCGGGATTTGATC+AGG - Chr4:75468402-75468421 None:intergenic 55.0%
TTCCAGAACAGTTAGCGGCG+AGG + Chr4:75468151-75468170 MsG0480022687.01.T01:CDS 55.0%
TTTGGAAGCCACGGTCAAGG+AGG - Chr4:75467690-75467709 None:intergenic 55.0%
! ATGGGTTGCAGCAGCTAAGC+CGG - Chr4:75467581-75467600 None:intergenic 55.0%
! CCGTTTTGCAACCTCACGCT+TGG - Chr4:75468243-75468262 None:intergenic 55.0%
!! CGTTGGTTGATTCGAGGAGG+AGG - Chr4:75467627-75467646 None:intergenic 55.0%
!! GGCAAGTTGGGAGGAGCATT+TGG - Chr4:75467503-75467522 None:intergenic 55.0%
!! TGTGAGGACACCGATTCTGG+TGG - Chr4:75467911-75467930 None:intergenic 55.0%
AGCCGTCGACAATGTCGGTG+CGG - Chr4:75467666-75467685 None:intergenic 60.0%
CCCTCCTCACTCCCCAAAAC+CGG + Chr4:75467529-75467548 MsG0480022687.01.T01:CDS 60.0%
GAAGTGGATCAGCGACGGTG+TGG - Chr4:75467816-75467835 None:intergenic 60.0%
GAATCAACCAACGCCGTCGG+TGG + Chr4:75467634-75467653 MsG0480022687.01.T01:CDS 60.0%
GGAGGGGTTTGTGGAAGGGA+GGG - Chr4:75467440-75467459 None:intergenic 60.0%
TGGAGGGGTTTGTGGAAGGG+AGG - Chr4:75467441-75467460 None:intergenic 60.0%
! GTCCGCACCGACATTGTCGA+CGG + Chr4:75467661-75467680 MsG0480022687.01.T01:CDS 60.0%
! TGCCGTTGAAGAACCGGCTC+TGG + Chr4:75468296-75468315 MsG0480022687.01.T01:CDS 60.0%
!! CGACGGCGTTGGTTGATTCG+AGG - Chr4:75467633-75467652 None:intergenic 60.0%
!! CGGCGTTGGTTGATTCGAGG+AGG - Chr4:75467630-75467649 None:intergenic 60.0%
!!! CCGGTTTTGGGGAGTGAGGA+GGG - Chr4:75467532-75467551 None:intergenic 60.0%
!!! CGGTTTTGGGGAGTGAGGAG+GGG - Chr4:75467531-75467550 None:intergenic 60.0%
!!! GGTTTTGGGGAGTGAGGAGG+GGG - Chr4:75467530-75467549 None:intergenic 60.0%
GACGGCTTCCTCCTTGACCG+TGG + Chr4:75467679-75467698 MsG0480022687.01.T01:CDS 65.0%
TTGCAGCAGCTAAGCCGGCG+AGG - Chr4:75467576-75467595 None:intergenic 65.0%
TTGGGGAGTGAGGAGGGGGT+GGG - Chr4:75467526-75467545 None:intergenic 65.0%
TTTGGGGAGTGAGGAGGGGG+TGG - Chr4:75467527-75467546 None:intergenic 65.0%
! GCTCCGATTCGCCAAGCGTG+AGG + Chr4:75468229-75468248 MsG0480022687.01.T01:CDS 65.0%
!! ATAATCGGCGCTGGCCTCGC+CGG + Chr4:75467559-75467578 MsG0480022687.01.T01:CDS 65.0%
!!! GACGCCGGTTTTGGGGAGTG+AGG - Chr4:75467536-75467555 None:intergenic 65.0%
!!! GCCGGTTTTGGGGAGTGAGG+AGG - Chr4:75467533-75467552 None:intergenic 65.0%
AGGAGGGGGTGGGGGCAAGT+TGG - Chr4:75467516-75467535 None:intergenic 70.0%
GGAGGGGGTGGGGGCAAGTT+GGG - Chr4:75467515-75467534 None:intergenic 70.0%
TGGGGAGTGAGGAGGGGGTG+GGG - Chr4:75467525-75467544 None:intergenic 70.0%
GACGCGACCACCGACGGCGT+TGG - Chr4:75467644-75467663 None:intergenic 75.0%
GGGGAGTGAGGAGGGGGTGG+GGG - Chr4:75467524-75467543 None:intergenic 75.0%
GGTGCGGACGCGACCACCGA+CGG - Chr4:75467650-75467669 None:intergenic 75.0%
! GGGGGTGGGGGCAAGTTGGG+AGG - Chr4:75467512-75467531 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75467418 75468830 75467418 ID=MsG0480022687.01;Name=MsG0480022687.01
Chr4 mRNA 75467418 75468830 75467418 ID=MsG0480022687.01.T01;Parent=MsG0480022687.01;Name=MsG0480022687.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|470
Chr4 exon 75467418 75468830 75467418 ID=MsG0480022687.01.T01:exon:5612;Parent=MsG0480022687.01.T01
Chr4 CDS 75467418 75468830 75467418 ID=MsG0480022687.01.T01:cds;Parent=MsG0480022687.01.T01
Gene Sequence

>MsG0480022687.01.T01

ATGACTATCATCACACTTTCCCTCCCTTCCACAAACCCCTCCATCTTCTTCCCTTCTTCTCCAAAACCATTCAAATTCAATCCCAAATGCTCCTCCCAACTTGCCCCCACCCCCTCCTCACTCCCCAAAACCGGCGTCATTATAATCGGCGCTGGCCTCGCCGGCTTAGCTGCTGCAACCCATCTCAACTCCCAAAACATCCCTTTCCTCCTCCTCGAATCAACCAACGCCGTCGGTGGTCGCGTCCGCACCGACATTGTCGACGGCTTCCTCCTTGACCGTGGCTTCCAAATCTTCATCACCGCTTATCCAGAAGCTCAAAAACTCCTCAATTACCAATCCTTAAACCTCCAAAAATTCTACTCAGGTGCTAAAATCTTCTACAACGGCCAATTCCACACCGTCGCTGATCCACTTCGCCATTTCTTCGACTCCGCAAAATCCCTAACTAACCCTATCGGTTCCATCTTCGATAAATTACTCATCGGAACCACCAGAATCGGTGTCCTCACAAAATCCGACGAACAAATTCTTACCGCAGAAGAAGTTCCCACAATTGACTTACTAAAGAAGCTAGGATTTTCAGATTCGATCGTTAGAAGATTCTTCCGACCATTTTTCGGCGGTATCTTCTTCGATCCAGAGCTCGAAACAACTTCAAGACTATTCGATTTCATCTTCAAGTGTCTTGCTCTCGGCGAAAATACTCTTCCGGCGAAAGGTATATCAGCGATTCCAGAACAGTTAGCGGCGAGGTTACCGTCAGATTCAATCTTGCTGAACACGAAAGCAGTTTCCGTTGATTTTAACGGCTCCGATTCGCCAAGCGTGAGGTTGCAAAACGGTGACGTTTTGAGTAGCGAGCTAGGAGTGATCGTTGCCGTTGAAGAACCGGCTCTGGTTAAATTATTACCGGGAAAGAAAAACCCGGTTTACAAAAAACCGGTTCGGAGTACGGTTTGCTTATATTTTACCGCGAACCCTGATCAAATCCCGGTCCGTGATCCAGTTCTGTTTTTAAACGGTTCGGGTAAAGGAATAGTGAATAACATGTTTTTTGTGACAAATGTAGCACCATCATATGCACCACCAAACAAGGCATTGGTTTCAGTATCATTGATTGGGTTATTTGAGGATGTGTCTGATGAAGAGTTAGTTGTTAAGGTGGTTCAAGAACTTTCAGGTTGGTTTGGAGATAAGATGGTAAAAGAATGGAAGCATTTGAGAACTTATAGGATTGTGTATGCACAACCTAATCAGTGTCCACCTACGAATTTGAAGAAAAACCAAACAATTGAACCGGGTTTGTATTTGTGTGGTGATTATTTGACTTCAGCTACATTTGATGGTGCTTTGGTTTCTGGTAGGAGAGCAGCTGAATCACTGTTAAATGATAGAGCCTTCATTGGCTAA

Protein sequence

>MsG0480022687.01.T01

MTIITLSLPSTNPSIFFPSSPKPFKFNPKCSSQLAPTPSSLPKTGVIIIGAGLAGLAAATHLNSQNIPFLLLESTNAVGGRVRTDIVDGFLLDRGFQIFITAYPEAQKLLNYQSLNLQKFYSGAKIFYNGQFHTVADPLRHFFDSAKSLTNPIGSIFDKLLIGTTRIGVLTKSDEQILTAEEVPTIDLLKKLGFSDSIVRRFFRPFFGGIFFDPELETTSRLFDFIFKCLALGENTLPAKGISAIPEQLAARLPSDSILLNTKAVSVDFNGSDSPSVRLQNGDVLSSELGVIVAVEEPALVKLLPGKKNPVYKKPVRSTVCLYFTANPDQIPVRDPVLFLNGSGKGIVNNMFFVTNVAPSYAPPNKALVSVSLIGLFEDVSDEELVVKVVQELSGWFGDKMVKEWKHLRTYRIVYAQPNQCPPTNLKKNQTIEPGLYLCGDYLTSATFDGALVSGRRAAESLLNDRAFIG*