AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007288.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007288.01.T01 MTR_7g116320 69.755 367 47 8 1 303 1 367 1.68e-130 375
MsG0280007288.01.T01 MTR_7g116320 61.607 336 83 8 1 303 1 323 7.73e-93 278
MsG0280007288.01.T01 MTR_7g116320 86.473 207 21 2 1 200 1 207 1.77e-88 265
MsG0280007288.01.T01 MTR_1g079780 40.805 348 120 12 13 298 5 328 1.53e-63 204
MsG0280007288.01.T01 MTR_8g031100 41.379 145 79 2 61 200 76 219 2.37e-24 101
MsG0280007288.01.T01 MTR_7g074935 46.617 133 64 5 74 200 60 191 3.45e-24 100
MsG0280007288.01.T01 MTR_4g101990 39.735 151 81 4 60 200 58 208 3.71e-24 100
MsG0280007288.01.T01 MTR_8g098390 36.970 165 79 6 53 200 74 230 2.60e-21 92.8
MsG0280007288.01.T01 MTR_1g061530 39.726 146 67 4 73 200 64 206 2.81e-20 90.1
MsG0280007288.01.T01 MTR_8g036160 36.842 152 84 3 60 200 56 206 7.64e-20 89.0
MsG0280007288.01.T01 MTR_5g010330 36.296 135 74 4 73 200 69 198 8.20e-20 88.2
MsG0280007288.01.T01 MTR_1g076710 40.000 165 73 5 60 200 35 197 1.56e-19 87.8
MsG0280007288.01.T01 MTR_4g098460 47.253 91 47 1 121 211 66 155 4.98e-18 82.8
MsG0280007288.01.T01 MTR_4g098460 44.792 96 47 2 121 211 66 160 9.05e-16 76.3
MsG0280007288.01.T01 MTR_4g055833 35.838 173 93 5 36 199 23 186 1.03e-15 77.0
MsG0280007288.01.T01 MTR_5g011620 35.461 141 78 3 70 200 42 179 1.16e-15 77.8
MsG0280007288.01.T01 MTR_1g038960 36.364 165 85 7 42 200 62 212 7.98e-15 74.3
MsG0280007288.01.T01 MTR_4g055803 32.584 178 87 5 63 212 49 221 1.48e-14 73.9
MsG0280007288.01.T01 MTR_7g077120 39.706 136 76 2 71 200 86 221 2.80e-14 72.8
MsG0280007288.01.T01 MTR_5g014360 38.519 135 71 3 75 200 121 252 4.51e-14 72.4
MsG0280007288.01.T01 MTR_1g079810 47.692 65 34 0 136 200 101 165 1.18e-13 70.5
MsG0280007288.01.T01 MTR_6g061670 35.000 140 79 2 73 200 50 189 1.45e-13 70.5
MsG0280007288.01.T01 MTR_1g044155 43.077 65 37 0 136 200 153 217 1.89e-13 70.5
MsG0280007288.01.T01 MTR_6g061670 50.000 68 34 0 133 200 127 194 1.95e-13 70.1
MsG0280007288.01.T01 MTR_5g091630 26.776 183 86 5 17 199 3 137 5.27e-13 68.2
MsG0280007288.01.T01 MTR_4g055813 38.235 102 46 3 128 212 10 111 6.14e-13 68.2
MsG0280007288.01.T01 MTR_1g073860 40.000 65 39 0 136 200 121 185 1.05e-12 67.8
MsG0280007288.01.T01 MTR_5g011610 37.895 95 59 0 106 200 182 276 4.09e-12 66.2
MsG0280007288.01.T01 MTR_4g098450 41.270 63 37 0 138 200 105 167 4.95e-12 65.9
MsG0280007288.01.T01 MTR_5g011520 39.130 69 42 0 131 199 122 190 8.58e-12 65.1
MsG0280007288.01.T01 MTR_8g036060 37.143 70 44 0 131 200 108 177 2.90e-11 63.5
MsG0280007288.01.T01 MTR_5g041430 30.556 144 80 4 71 204 47 180 9.49e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007288.01.T01 AT3G04590 51.064 188 75 4 30 200 48 235 9.92e-42 146
MsG0280007288.01.T01 AT3G04590 51.064 188 75 4 30 200 48 235 1.10e-40 146
MsG0280007288.01.T01 AT2G33620 42.222 135 72 3 71 200 94 227 9.07e-26 105
MsG0280007288.01.T01 AT2G33620 42.222 135 72 3 71 200 94 227 9.07e-26 105
MsG0280007288.01.T01 AT2G33620 42.222 135 72 3 71 200 94 227 9.07e-26 105
MsG0280007288.01.T01 AT2G33620 42.222 135 72 3 71 200 94 227 9.07e-26 105
MsG0280007288.01.T01 AT4G22770 39.310 145 72 3 72 200 70 214 1.47e-24 101
MsG0280007288.01.T01 AT4G22770 39.310 145 72 3 72 200 70 214 1.47e-24 101
MsG0280007288.01.T01 AT2G45850 34.826 201 116 4 12 200 29 226 1.09e-23 98.2
MsG0280007288.01.T01 AT2G45850 34.826 201 116 4 12 200 29 226 3.10e-23 98.2
MsG0280007288.01.T01 AT2G45850 34.826 201 116 4 12 200 29 226 3.10e-23 98.2
MsG0280007288.01.T01 AT3G61310 42.537 134 66 4 73 200 100 228 4.04e-22 95.1
MsG0280007288.01.T01 AT5G46640 40.541 148 64 4 73 200 101 244 6.10e-22 95.1
MsG0280007288.01.T01 AT4G12080 39.456 147 68 4 74 200 89 234 6.39e-22 94.7
MsG0280007288.01.T01 AT4G25320 40.994 161 77 5 58 200 70 230 1.50e-21 94.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 92 217 3.72e-21 92.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 92 217 3.72e-21 92.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 92 217 3.72e-21 92.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 92 217 3.72e-21 92.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 92 217 3.72e-21 92.4
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 98 223 3.73e-21 92.8
MsG0280007288.01.T01 AT1G63480 40.909 132 67 4 73 199 98 223 3.73e-21 92.8
MsG0280007288.01.T01 AT5G62260 35.928 167 73 4 62 200 64 224 1.03e-20 90.1
MsG0280007288.01.T01 AT5G62260 35.928 167 73 4 62 200 64 224 2.50e-20 90.9
MsG0280007288.01.T01 AT5G62260 35.928 167 73 4 62 200 64 224 2.50e-20 90.9
MsG0280007288.01.T01 AT4G00200 37.762 143 64 4 73 200 55 187 1.08e-18 85.1
MsG0280007288.01.T01 AT4G00200 37.762 143 64 4 73 200 55 187 1.08e-18 85.1
MsG0280007288.01.T01 AT5G51590 58.462 65 27 0 136 200 178 242 3.17e-17 82.0
MsG0280007288.01.T01 AT1G63470 35.036 137 79 2 73 199 104 240 4.10e-17 81.3
MsG0280007288.01.T01 AT4G17950 35.849 159 70 5 73 200 130 287 7.02e-17 80.9
MsG0280007288.01.T01 AT5G28590 32.178 202 89 8 126 285 20 215 1.90e-16 77.0
MsG0280007288.01.T01 AT4G14465 38.462 65 40 0 136 200 94 158 3.22e-11 63.2

Find 120 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTATGCAACAAAAT+AGG 0.176992 2:-13131752 MsG0280007288.01.T01:CDS
GCAATTTATGCAACAAAATA+GGG 0.199709 2:-13131751 MsG0280007288.01.T01:CDS
CAAATTCTCAATCAGGAATT+TGG 0.241504 2:+13129797 None:intergenic
CGGATGGCGCATACTATAAA+TGG 0.259174 2:+13129688 None:intergenic
CTCCGTCAACCAGCATCTTC+AGG 0.315212 2:-13131681 MsG0280007288.01.T01:CDS
GGTGGAAGAAAGAGCTTAAT+TGG 0.350801 2:+13133562 None:intergenic
TTAGCAGCTAGGGCTTGTTC+AGG 0.361515 2:+13133324 None:intergenic
GAGAGAATGAGATTTCTTAG+AGG 0.362002 2:+13133221 None:intergenic
AGAGCTTAATTGGTTGTCAT+TGG 0.370721 2:+13133572 None:intergenic
TACCTATACCATGATAAATA+AGG 0.371169 2:-13129519 MsG0280007288.01.T01:three_prime_UTR
TATATTTCCCTTCCGTTTCA+AGG 0.373603 2:-13129452 MsG0280007288.01.T01:three_prime_UTR
GTTGCTGGTGTTGTTGTTGT+TGG 0.374911 2:+13133529 None:intergenic
TGCTTCCTAGCTTAGTTTGT+GGG 0.376035 2:-13129476 MsG0280007288.01.T01:three_prime_UTR
AGAGGTAGACCTAGAAAATA+TGG 0.378143 2:-13133351 MsG0280007288.01.T01:CDS
CTCAATATTGCAGGAAGAAC+AGG 0.378174 2:-13129859 MsG0280007288.01.T01:intron
TACCTTATTTATCATGGTAT+AGG 0.382820 2:+13129517 None:intergenic
TAACCAGCATGTCTTGAATC+TGG 0.387032 2:+13129967 None:intergenic
CGCTGGAAGAGTCGACTGTT+TGG 0.391063 2:+13130102 None:intergenic
CTACCTCTCTTCCTCTTAGC+TGG 0.391774 2:+13133366 None:intergenic
GGCGAGCCAGCATCAAGTTT+AGG 0.392871 2:-13130131 MsG0280007288.01.T01:CDS
GGTGGTGGTGGTTGTGGATA+CGG 0.400323 2:+13133488 None:intergenic
GCCATCTCAAATTCTCAATC+AGG 0.415987 2:+13129790 None:intergenic
CATGTCATTGCTGTTGCTGC+TGG 0.421863 2:-13132965 MsG0280007288.01.T01:CDS
TTCGCCCTCCGGTTTCATTA+CGG 0.428138 2:+13130760 None:intergenic
GTTGTTGGTGGTTGTGGTGG+TGG 0.428283 2:+13133544 None:intergenic
GTTGTTGTTGTTGGTGGTTG+TGG 0.436641 2:+13133538 None:intergenic
CAAGTTGTTGAATCATGTAA+TGG 0.441011 2:+13130034 None:intergenic
GGTGGTTGTGGATACGGTGG+TGG 0.443069 2:+13133494 None:intergenic
ATGTTCATCATTCCTCGGAT+TGG 0.444925 2:+13130074 None:intergenic
TATACCTACCTTATTTATCA+TGG 0.447415 2:+13129511 None:intergenic
GTCAGAAGCCACGACCTTAA+CGG 0.450596 2:+13129668 None:intergenic
TCCTATGTCCGTAATGAAAC+CGG 0.452888 2:-13130768 MsG0280007288.01.T01:CDS
TGGGGTGATGCAGGCAATGC+AGG 0.457106 2:-13133004 MsG0280007288.01.T01:intron
ATGTGGGACCCATCCGTGTT+TGG 0.457507 2:+13133438 None:intergenic
ATGCTTCCTAGCTTAGTTTG+TGG 0.457545 2:-13129477 MsG0280007288.01.T01:three_prime_UTR
GCTGGTGTTGTTGTTGTTGG+TGG 0.458412 2:+13133532 None:intergenic
ATAGTATGCGCCATCCGTTA+AGG 0.460483 2:-13129682 MsG0280007288.01.T01:three_prime_UTR
TGGTCATAGCCTCCATTCTC+GGG 0.466277 2:+13129817 None:intergenic
GGTTCGATGGCACCAATGTC+TGG 0.467018 2:-13129762 MsG0280007288.01.T01:three_prime_UTR
GAGAATTTGAGATGGCTTGT+GGG 0.469001 2:-13129783 MsG0280007288.01.T01:three_prime_UTR
TCTCACCAGTCTCCCGAGAA+TGG 0.469905 2:-13129829 MsG0280007288.01.T01:CDS
AGCCTCCATTCTCGGGAGAC+TGG 0.470077 2:+13129824 None:intergenic
CGGAGATGCGGTGGTGGTGG+TGG 0.470099 2:+13133476 None:intergenic
TATGCATTCAATAGGATGTT+GGG 0.475179 2:-13131785 MsG0280007288.01.T01:intron
TTGGTCATAGCCTCCATTCT+CGG 0.475797 2:+13129816 None:intergenic
GCAGAAGAAGCCACTGAATG+AGG 0.479604 2:+13133408 None:intergenic
CATTACATGATTCAACAACT+TGG 0.485575 2:-13130033 MsG0280007288.01.T01:CDS
ATTCTTGTTGTTATCAAGAG+TGG 0.485874 2:+13133275 None:intergenic
GATTTCTTAGAGGTGAAAGA+AGG 0.487496 2:+13133231 None:intergenic
CGTCGGAGATGCGGTGGTGG+TGG 0.495646 2:+13133473 None:intergenic
AAATCTCATTCTCTCTCTCT+AGG 0.496213 2:-13133213 MsG0280007288.01.T01:intron
CTCCTGAAGATGCTGGTTGA+CGG 0.496465 2:+13131679 None:intergenic
ATATGCATTATGTCTGCATC+TGG 0.497917 2:-13131723 MsG0280007288.01.T01:CDS
AAGACCACCACTTCGCCCTC+CGG 0.498681 2:+13130749 None:intergenic
ACCTCCCAGGTCTACAGAGT+GGG 0.499164 2:-13129998 MsG0280007288.01.T01:CDS
CTCAGCTTGAACCAGCTAAG+AGG 0.502476 2:-13133377 MsG0280007288.01.T01:CDS
CTGAATGAGGGTAAAGTATG+TGG 0.508435 2:+13133421 None:intergenic
TTCTTGTTGTTATCAAGAGT+GGG 0.509082 2:+13133276 None:intergenic
TCCTCGGATTGGATTCCCGC+TGG 0.509691 2:+13130085 None:intergenic
TGCGCCATCCGTTAAGGTCG+TGG 0.515945 2:-13129676 MsG0280007288.01.T01:three_prime_UTR
AGGAGGCAACATTATGTATG+AGG 0.516281 2:-13131661 MsG0280007288.01.T01:intron
AAATACATCACAAGTAAATG+AGG 0.517819 2:+13129599 None:intergenic
GAATGATGAACATCAAGCTA+TGG 0.518220 2:-13130064 MsG0280007288.01.T01:CDS
TATAGCCCACAAACTAAGCT+AGG 0.521819 2:+13129471 None:intergenic
GTTGTTGTTGGTGGTTGTGG+TGG 0.524710 2:+13133541 None:intergenic
GCTTGATGTTCATCATTCCT+CGG 0.527228 2:+13130069 None:intergenic
GTTTGCACGTGACACCTCCC+AGG 0.535717 2:-13130011 MsG0280007288.01.T01:CDS
TCCGGTTTCATTACGGACAT+AGG 0.536430 2:+13130767 None:intergenic
GTATGCATTCAATAGGATGT+TGG 0.536594 2:-13131786 MsG0280007288.01.T01:intron
CACTGGACTTCATACCTGAC+AGG 0.545872 2:+13129941 None:intergenic
CATCCAGATTCAAGACATGC+TGG 0.548607 2:-13129970 MsG0280007288.01.T01:CDS
ATGGAGCAAGCACCTTGAAA+CGG 0.550654 2:+13129440 None:intergenic
GTTCGTCGGAGATGCGGTGG+TGG 0.551568 2:+13133470 None:intergenic
TTAGAGGTGAAAGAAGGAGA+AGG 0.553443 2:+13133237 None:intergenic
CATACTTTACCCTCATTCAG+TGG 0.553520 2:-13133418 MsG0280007288.01.T01:CDS
ACCGTTCGTCGGAGATGCGG+TGG 0.555343 2:+13133467 None:intergenic
CATGCTGGTTATGACCTGTC+AGG 0.555450 2:-13129955 MsG0280007288.01.T01:intron
CATTGCTGTTGCTGCTGGTG+AGG 0.555993 2:-13132960 MsG0280007288.01.T01:intron
AGCAAGCACCTTGAAACGGA+AGG 0.556073 2:+13129444 None:intergenic
TGAGAATTTGAGATGGCTTG+TGG 0.563343 2:-13129784 MsG0280007288.01.T01:three_prime_UTR
ATTGCAGGAAGAACAGGTCA+TGG 0.575958 2:-13129853 MsG0280007288.01.T01:intron
ACGGAGAGAGGCATTAGAGA+TGG 0.577094 2:+13131698 None:intergenic
CACCTCGTGACAAAGACTGC+TGG 0.581481 2:+13129711 None:intergenic
AATGATGAACATCAAGCTAT+GGG 0.582749 2:-13130063 MsG0280007288.01.T01:CDS
TCCTGATTGAGAATTTGAGA+TGG 0.587653 2:-13129791 MsG0280007288.01.T01:exon
TGGAAGAGTCGACTGTTTGG+TGG 0.588873 2:+13130105 None:intergenic
GAGATGGCTTGTGGGTTCGA+TGG 0.589349 2:-13129775 MsG0280007288.01.T01:three_prime_UTR
GGTGGTGGTTGTGGATACGG+TGG 0.589521 2:+13133491 None:intergenic
GAACCAGCTAAGAGGAAGAG+AGG 0.597787 2:-13133369 MsG0280007288.01.T01:CDS
TGGAAACCTAAACTTGATGC+TGG 0.602657 2:+13130125 None:intergenic
GAAACCGGAGGGCGAAGTGG+TGG 0.603275 2:-13130753 MsG0280007288.01.T01:CDS
CAATTTATGCAACAAAATAG+GGG 0.604932 2:-13131750 MsG0280007288.01.T01:CDS
CAGAAGAAGCCACTGAATGA+GGG 0.609592 2:+13133409 None:intergenic
AGATGCTGGTTGACGGAGAG+AGG 0.610130 2:+13131686 None:intergenic
TTTGGTAAAAGACCGTTCGT+CGG 0.610276 2:+13133456 None:intergenic
GATGCAGGCAATGCAGGACA+AGG 0.611195 2:-13132998 MsG0280007288.01.T01:intron
AAGACCGTTCGTCGGAGATG+CGG 0.611771 2:+13133464 None:intergenic
TACAACTGTTAACCAGACAT+TGG 0.620305 2:+13129750 None:intergenic
TTGCAGGAAGAACAGGTCAT+GGG 0.620825 2:-13129852 MsG0280007288.01.T01:intron
CAAAGACTGCTGGTATGTAG+TGG 0.621373 2:+13129721 None:intergenic
AATGAAACCGGAGGGCGAAG+TGG 0.622641 2:-13130756 MsG0280007288.01.T01:CDS
AAACAGTCGACTCTTCCAGC+GGG 0.624900 2:-13130100 MsG0280007288.01.T01:CDS
CACCTCCCAGGTCTACAGAG+TGG 0.633953 2:-13129999 MsG0280007288.01.T01:CDS
GATGAACATCAAGCTATGGG+TGG 0.634114 2:-13130060 MsG0280007288.01.T01:CDS
GCAAGCACCTTGAAACGGAA+GGG 0.638256 2:+13129445 None:intergenic
ATGTTGCCTCCTGAAGATGC+TGG 0.639283 2:+13131672 None:intergenic
TGAATGAGGGTAAAGTATGT+GGG 0.641240 2:+13133422 None:intergenic
TATACCATGATAAATAAGGT+AGG 0.647891 2:-13129515 MsG0280007288.01.T01:three_prime_UTR
CACCAGTCTCCCGAGAATGG+AGG 0.648200 2:-13129826 MsG0280007288.01.T01:CDS
ACCACCGCATCTCCGACGAA+CGG 0.651866 2:-13133468 MsG0280007288.01.T01:CDS
CCTCCCAGGTCTACAGAGTG+GGG 0.652955 2:-13129997 MsG0280007288.01.T01:CDS
GAAGCCACGACCTTAACGGA+TGG 0.655831 2:+13129672 None:intergenic
TCCAGCGGGAATCCAATCCG+AGG 0.670950 2:-13130086 MsG0280007288.01.T01:CDS
ATGTCCGTAATGAAACCGGA+GGG 0.676572 2:-13130764 MsG0280007288.01.T01:CDS
CGTCAACCAGCATCTTCAGG+AGG 0.676685 2:-13131678 MsG0280007288.01.T01:CDS
TATGTCCGTAATGAAACCGG+AGG 0.677990 2:-13130765 MsG0280007288.01.T01:CDS
CTCCCAGGTCTACAGAGTGG+GGG 0.684142 2:-13129996 MsG0280007288.01.T01:CDS
CAAACAGTCGACTCTTCCAG+CGG 0.690163 2:-13130101 MsG0280007288.01.T01:CDS
TACCAGCAGTCTTTGTCACG+AGG 0.704449 2:-13129713 MsG0280007288.01.T01:three_prime_UTR
CCCCACTCTGTAGACCTGGG+AGG 0.709027 2:+13129997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTATTTATTT+TGG - Chr2:13133578-13133597 MsG0280007288.01.T01:CDS 0.0%
!! AAATTCAAAGTAATATAAAT+AGG + Chr2:13131518-13131537 None:intergenic 10.0%
!! AAGAGAAAAATAAAAAAATA+TGG + Chr2:13131757-13131776 None:intergenic 10.0%
!! ATAAAAAATATGAAAAAGAA+TGG + Chr2:13133568-13133587 None:intergenic 10.0%
!! TGTTATAAATATAGATATTT+CGG - Chr2:13132629-13132648 MsG0280007288.01.T01:intron 10.0%
!! TTTAATAATCTTAAACAAAA+TGG + Chr2:13130197-13130216 None:intergenic 10.0%
!! TTTATTATTTATTATAAAGG+AGG - Chr2:13130375-13130394 MsG0280007288.01.T01:intron 10.0%
!!! TTATTTATTTTGGAAATTTA+GGG - Chr2:13133588-13133607 MsG0280007288.01.T01:exon 10.0%
!!! TTTATTTATTTTGGAAATTT+AGG - Chr2:13133587-13133606 MsG0280007288.01.T01:exon 10.0%
!! AAAAATAAAAAAATATGGAC+GGG + Chr2:13131752-13131771 None:intergenic 15.0%
!! ATTTATCAAAAATAACTTCT+TGG + Chr2:13132731-13132750 None:intergenic 15.0%
!! GAAAAATAAAAAAATATGGA+CGG + Chr2:13131753-13131772 None:intergenic 15.0%
!! GATGTATTTAAAAATTAGAA+TGG - Chr2:13133401-13133420 MsG0280007288.01.T01:CDS 15.0%
!!! AGTTGATCTTTTTATTTTTT+AGG - Chr2:13132099-13132118 MsG0280007288.01.T01:intron 15.0%
!!! CTTAATTTTATTTAGTTTGA+TGG - Chr2:13129950-13129969 MsG0280007288.01.T01:intron 15.0%
!!! TTATTGATTATCATAATTCA+AGG - Chr2:13129911-13129930 MsG0280007288.01.T01:intron 15.0%
!!! TTTTAACAAACTTAAACAAA+CGG - Chr2:13130531-13130550 MsG0280007288.01.T01:intron 15.0%
!! AAAATAAAAAAATATGGACG+GGG + Chr2:13131751-13131770 None:intergenic 20.0%
!! AAATTGTGTCTATATTAGAT+TGG - Chr2:13131991-13132010 MsG0280007288.01.T01:intron 20.0%
!! AGAAATATTCTTATAAGAAG+TGG + Chr2:13131936-13131955 None:intergenic 20.0%
!! GAAATATTCTTATAAGAAGT+GGG + Chr2:13131935-13131954 None:intergenic 20.0%
!! TAAAATGTAAAGATAAACCT+TGG + Chr2:13131613-13131632 None:intergenic 20.0%
!! TATTTAAAAATTAGAATGGC+TGG - Chr2:13133405-13133424 MsG0280007288.01.T01:CDS 20.0%
!! TTGGAGAAATAATCAATTAT+TGG - Chr2:13130622-13130641 MsG0280007288.01.T01:intron 20.0%
!! TTTAACAAACTTAAACAAAC+GGG - Chr2:13130532-13130551 MsG0280007288.01.T01:intron 20.0%
!!! TATTTTTTAGGTGTATGATT+TGG - Chr2:13132111-13132130 MsG0280007288.01.T01:intron 20.0%
!!! TTTATTTAGTTTGATGGTTA+TGG - Chr2:13129956-13129975 MsG0280007288.01.T01:CDS 20.0%
!!! TTTTTAAGATGCTAATTTCT+TGG - Chr2:13130795-13130814 MsG0280007288.01.T01:CDS 20.0%
! AAACAATCTTCAAAAGGAAA+CGG - Chr2:13131426-13131445 MsG0280007288.01.T01:intron 25.0%
! AAATACATCACAAGTAAATG+AGG + Chr2:13133390-13133409 None:intergenic 25.0%
! AATAAGATCCTAAAACATCT+TGG + Chr2:13131062-13131081 None:intergenic 25.0%
! ATTGCTCAAGTTAATGTATT+TGG - Chr2:13130164-13130183 MsG0280007288.01.T01:intron 25.0%
! ATTTCTCCAAATCTAATCAA+GGG + Chr2:13130612-13130631 None:intergenic 25.0%
! CAATTTATGCAACAAAATAG+GGG - Chr2:13131236-13131255 MsG0280007288.01.T01:intron 25.0%
! CTCTTAATCATGAATTGATT+TGG - Chr2:13129839-13129858 MsG0280007288.01.T01:CDS 25.0%
! GAAAAAGATGAAAACCAAAT+TGG + Chr2:13131152-13131171 None:intergenic 25.0%
! GATTCTTTCTCTAATTTCTA+GGG - Chr2:13129799-13129818 MsG0280007288.01.T01:exon 25.0%
! GCAATTTATGCAACAAAATA+GGG - Chr2:13131235-13131254 MsG0280007288.01.T01:intron 25.0%
! TACCTATACCATGATAAATA+AGG - Chr2:13133467-13133486 MsG0280007288.01.T01:CDS 25.0%
! TATACCATGATAAATAAGGT+AGG - Chr2:13133471-13133490 MsG0280007288.01.T01:CDS 25.0%
! TATTTCTCCAAATCTAATCA+AGG + Chr2:13130613-13130632 None:intergenic 25.0%
! TATTTGAGTATGCATTCAAT+AGG - Chr2:13131193-13131212 MsG0280007288.01.T01:intron 25.0%
! TCTTTAATGCTTTGATATCA+GGG - Chr2:13132168-13132187 MsG0280007288.01.T01:intron 25.0%
! TGAAAACCAAATTGGATAAA+TGG + Chr2:13131144-13131163 None:intergenic 25.0%
! TGAAGATTGTTTGAAGAATA+GGG + Chr2:13131418-13131437 None:intergenic 25.0%
! TGATTCTTTCTCTAATTTCT+AGG - Chr2:13129798-13129817 MsG0280007288.01.T01:exon 25.0%
! TGCAATTTATGCAACAAAAT+AGG - Chr2:13131234-13131253 MsG0280007288.01.T01:intron 25.0%
! TGTGAATGTAATTCATTATC+AGG + Chr2:13132708-13132727 None:intergenic 25.0%
! TTATACCATAAGAAAATCAG+TGG + Chr2:13133089-13133108 None:intergenic 25.0%
! TTCTTCAAACAATCTTCAAA+AGG - Chr2:13131420-13131439 MsG0280007288.01.T01:intron 25.0%
! TTCTTTAATGCTTTGATATC+AGG - Chr2:13132167-13132186 MsG0280007288.01.T01:intron 25.0%
! TTGAAGATTGTTTGAAGAAT+AGG + Chr2:13131419-13131438 None:intergenic 25.0%
! TTGCTCAAGTTAATGTATTT+GGG - Chr2:13130165-13130184 MsG0280007288.01.T01:intron 25.0%
! TTTAAGCAAAATATGCTTGT+AGG - Chr2:13130991-13131010 MsG0280007288.01.T01:intron 25.0%
! TTTAATAAAACACTGTACTG+CGG - Chr2:13132069-13132088 MsG0280007288.01.T01:intron 25.0%
!! AAGTTAATGTATTTGGGTTT+GGG - Chr2:13130171-13130190 MsG0280007288.01.T01:intron 25.0%
!! AGACAATAGCATTTTTCATA+TGG - Chr2:13130763-13130782 MsG0280007288.01.T01:CDS 25.0%
!! AGGCAAAACAATATTTTTCA+AGG + Chr2:13133370-13133389 None:intergenic 25.0%
!! ATCCAAGAATAATGCTTTTA+GGG - Chr2:13130874-13130893 MsG0280007288.01.T01:intron 25.0%
!! CTAACCAAAAAAACTTTTTG+TGG - Chr2:13131863-13131882 MsG0280007288.01.T01:intron 25.0%
!! TACCTTATTTATCATGGTAT+AGG + Chr2:13133472-13133491 None:intergenic 25.0%
!! TATACCTACCTTATTTATCA+TGG + Chr2:13133478-13133497 None:intergenic 25.0%
!! TTATCTTTACATTTTACCCA+TGG - Chr2:13131617-13131636 MsG0280007288.01.T01:intron 25.0%
!!! AAAGCTATTTTGATTAGCTT+TGG + Chr2:13130429-13130448 None:intergenic 25.0%
!!! ATTTTTTATGGACAACAAGA+AGG - Chr2:13132780-13132799 MsG0280007288.01.T01:intron 25.0%
!!! TTGACCACAAAAAGTTTTTT+TGG + Chr2:13131870-13131889 None:intergenic 25.0%
AAATCAACTTCTGCCAAAAA+AGG - Chr2:13132519-13132538 MsG0280007288.01.T01:intron 30.0%
AATCAACTTCTGCCAAAAAA+GGG - Chr2:13132520-13132539 MsG0280007288.01.T01:intron 30.0%
AATGATGAACATCAAGCTAT+GGG - Chr2:13132923-13132942 MsG0280007288.01.T01:intron 30.0%
ACAGAAACTACAAAAGAAAC+AGG + Chr2:13132450-13132469 None:intergenic 30.0%
ATAAATAGGAATATGAGCCT+TGG + Chr2:13131504-13131523 None:intergenic 30.0%
CAAATTCTCAATCAGGAATT+TGG + Chr2:13133192-13133211 None:intergenic 30.0%
CAAGTTGTTGAATCATGTAA+TGG + Chr2:13132955-13132974 None:intergenic 30.0%
CATTACATGATTCAACAACT+TGG - Chr2:13132953-13132972 MsG0280007288.01.T01:intron 30.0%
GAATGTAATTCATTATCAGG+TGG + Chr2:13132705-13132724 None:intergenic 30.0%
GATAAATAGTTAATCCCTAC+AGG - Chr2:13132744-13132763 MsG0280007288.01.T01:intron 30.0%
GGATATACGTAGTAAATAAG+AGG + Chr2:13130650-13130669 None:intergenic 30.0%
TAACTATGTAGTGAAATCAG+TGG - Chr2:13132573-13132592 MsG0280007288.01.T01:intron 30.0%
TACTTGTGTTAAAGAAACCA+AGG - Chr2:13131593-13131612 MsG0280007288.01.T01:intron 30.0%
TAGCATATTCAATCAACATG+TGG + Chr2:13131668-13131687 None:intergenic 30.0%
TATGCATTCAATAGGATGTT+GGG - Chr2:13131201-13131220 MsG0280007288.01.T01:intron 30.0%
TTTACCTTGTGAATATTGAG+CGG - Chr2:13132407-13132426 MsG0280007288.01.T01:intron 30.0%
TTTCTTCCCTTGATTAGATT+TGG - Chr2:13130603-13130622 MsG0280007288.01.T01:intron 30.0%
! AAACTTTTTGTGGTCAAATC+TGG - Chr2:13131873-13131892 MsG0280007288.01.T01:intron 30.0%
! AATTCTGATGGACAAATCAT+AGG - Chr2:13132275-13132294 MsG0280007288.01.T01:intron 30.0%
! AGAATATTTCTACCTTCAAG+AGG - Chr2:13131945-13131964 MsG0280007288.01.T01:intron 30.0%
! AGTTTGATGGTTATGGTAAT+GGG - Chr2:13129963-13129982 MsG0280007288.01.T01:CDS 30.0%
! CAAGTTAATGTATTTGGGTT+TGG - Chr2:13130170-13130189 MsG0280007288.01.T01:intron 30.0%
! CCTTAGTGAAAATAAGTTGA+TGG - Chr2:13130828-13130847 MsG0280007288.01.T01:intron 30.0%
! GATCCAAGAATAATGCTTTT+AGG - Chr2:13130873-13130892 MsG0280007288.01.T01:intron 30.0%
! TAGTTTGATGGTTATGGTAA+TGG - Chr2:13129962-13129981 MsG0280007288.01.T01:CDS 30.0%
! TCCAAGAATAATGCTTTTAG+GGG - Chr2:13130875-13130894 MsG0280007288.01.T01:intron 30.0%
! TGTTTGCCATTTATCCAATT+TGG - Chr2:13131135-13131154 MsG0280007288.01.T01:intron 30.0%
! TTTCTGTTATAGCCTTTTTC+TGG - Chr2:13132463-13132482 MsG0280007288.01.T01:intron 30.0%
!! ATTCTTGTTGTTATCAAGAG+TGG + Chr2:13129714-13129733 None:intergenic 30.0%
!! CCATCAACTTATTTTCACTA+AGG + Chr2:13130831-13130850 None:intergenic 30.0%
!! TAATGCCTCTTCATTTTTGT+GGG - Chr2:13133435-13133454 MsG0280007288.01.T01:CDS 30.0%
!! TTCTTGTTGTTATCAAGAGT+GGG + Chr2:13129713-13129732 None:intergenic 30.0%
!!! CATTGTCGGTACATTTTTTA+TGG - Chr2:13132768-13132787 MsG0280007288.01.T01:intron 30.0%
!!! TTTTTGAGTGATGCTGTTAT+AGG + Chr2:13130937-13130956 None:intergenic 30.0%
!!! TTTTTTGTTCTGCCAGAAAA+AGG + Chr2:13132478-13132497 None:intergenic 30.0%
AAATCAGTGGAATGAAAAGC+AGG - Chr2:13132586-13132605 MsG0280007288.01.T01:intron 35.0%
AAATCTCATTCTCTCTCTCT+AGG - Chr2:13129773-13129792 MsG0280007288.01.T01:three_prime_UTR 35.0%
AATCAGTGGAATGAAAAGCA+GGG - Chr2:13132587-13132606 MsG0280007288.01.T01:intron 35.0%
AGAGCTTAATTGGTTGTCAT+TGG + Chr2:13129417-13129436 None:intergenic 35.0%
AGAGGTAGACCTAGAAAATA+TGG - Chr2:13129635-13129654 MsG0280007288.01.T01:three_prime_UTR 35.0%
ATAAGAAAATCAGTGGAGGA+TGG + Chr2:13133082-13133101 None:intergenic 35.0%
ATATGCATTATGTCTGCATC+TGG - Chr2:13131263-13131282 MsG0280007288.01.T01:intron 35.0%
ATCAACTTCTGCCAAAAAAG+GGG - Chr2:13132521-13132540 MsG0280007288.01.T01:intron 35.0%
CAGTGGTAATAATGGCTTAT+GGG - Chr2:13132035-13132054 MsG0280007288.01.T01:intron 35.0%
CTGCAAATGAATTTGTAGGT+TGG - Chr2:13132357-13132376 MsG0280007288.01.T01:intron 35.0%
GAATGATGAACATCAAGCTA+TGG - Chr2:13132922-13132941 MsG0280007288.01.T01:intron 35.0%
GAGAGAATGAGATTTCTTAG+AGG + Chr2:13129768-13129787 None:intergenic 35.0%
GATTTCTTAGAGGTGAAAGA+AGG + Chr2:13129758-13129777 None:intergenic 35.0%
GCTATTGTCTCAATGAGAAA+TGG + Chr2:13130753-13130772 None:intergenic 35.0%
GGAACTGCAAATGAATTTGT+AGG - Chr2:13132353-13132372 MsG0280007288.01.T01:intron 35.0%
GTAAAACAAATGCAAGACAG+CGG + Chr2:13132392-13132411 None:intergenic 35.0%
GTATGCATTCAATAGGATGT+TGG - Chr2:13131200-13131219 MsG0280007288.01.T01:intron 35.0%
GTATGCTTGTCTAATTCTGA+TGG - Chr2:13132263-13132282 MsG0280007288.01.T01:intron 35.0%
GTTGAGTGTTATCATAACCA+AGG - Chr2:13131484-13131503 MsG0280007288.01.T01:intron 35.0%
TAATGCTTTGATATCAGGGT+CGG - Chr2:13132172-13132191 MsG0280007288.01.T01:intron 35.0%
TACAACTGTTAACCAGACAT+TGG + Chr2:13133239-13133258 None:intergenic 35.0%
TACCATAAGAAAATCAGTGG+AGG + Chr2:13133086-13133105 None:intergenic 35.0%
TATATTTCCCTTCCGTTTCA+AGG - Chr2:13133534-13133553 MsG0280007288.01.T01:CDS 35.0%
TCAATGATTGTCAGTGTGTT+TGG + Chr2:13130569-13130588 None:intergenic 35.0%
TCCTGATTGAGAATTTGAGA+TGG - Chr2:13133195-13133214 MsG0280007288.01.T01:intron 35.0%
TGAATGAGGGTAAAGTATGT+GGG + Chr2:13129567-13129586 None:intergenic 35.0%
TTTGGAAGAAAACCCATAGA+GGG + Chr2:13130411-13130430 None:intergenic 35.0%
! GTTTGATGGTTATGGTAATG+GGG - Chr2:13129964-13129983 MsG0280007288.01.T01:CDS 35.0%
! TGTGAATTTTCCTGCATCAA+CGG - Chr2:13131097-13131116 MsG0280007288.01.T01:intron 35.0%
! TTTTCTCTTGTCGTAGAATC+AGG - Chr2:13131556-13131575 MsG0280007288.01.T01:intron 35.0%
!! CTAATGCCTCTTCATTTTTG+TGG - Chr2:13133434-13133453 MsG0280007288.01.T01:CDS 35.0%
!! TCCCCTAAAAGCATTATTCT+TGG + Chr2:13130879-13130898 None:intergenic 35.0%
!!! AGAAGCTTTTTTAGCAGCTA+GGG + Chr2:13129675-13129694 None:intergenic 35.0%
!!! AGGTTTTGAATTTCCCTCTA+TGG - Chr2:13130395-13130414 MsG0280007288.01.T01:intron 35.0%
!!! ATCCTCCACTGATTTTCTTA+TGG - Chr2:13133081-13133100 MsG0280007288.01.T01:intron 35.0%
!!! GGTTTTGAATTTCCCTCTAT+GGG - Chr2:13130396-13130415 MsG0280007288.01.T01:intron 35.0%
!!! TAGAAGCTTTTTTAGCAGCT+AGG + Chr2:13129676-13129695 None:intergenic 35.0%
!!! TCAGGAGTACCATATTTTCT+AGG + Chr2:13129647-13129666 None:intergenic 35.0%
AAAAAAGGGGGAAATGAGGT+GGG - Chr2:13132534-13132553 MsG0280007288.01.T01:intron 40.0%
AATAAGTGCCAAAACAACCG+TGG + Chr2:13130680-13130699 None:intergenic 40.0%
ACAGACCCACAAAAATGAAG+AGG + Chr2:13133443-13133462 None:intergenic 40.0%
AGAACCGCTCAATATTCACA+AGG + Chr2:13132414-13132433 None:intergenic 40.0%
AGATCCTAAAACATCTTGGC+TGG + Chr2:13131058-13131077 None:intergenic 40.0%
AGCGAAGTTCTCAATATTGC+AGG - Chr2:13133118-13133137 MsG0280007288.01.T01:intron 40.0%
AGGAGGCAACATTATGTATG+AGG - Chr2:13131325-13131344 MsG0280007288.01.T01:intron 40.0%
ATGTTCATCATTCCTCGGAT+TGG + Chr2:13132915-13132934 None:intergenic 40.0%
ATTCATTATCAGGTGGTGCT+TGG + Chr2:13132698-13132717 None:intergenic 40.0%
CATACTTTACCCTCATTCAG+TGG - Chr2:13129568-13129587 MsG0280007288.01.T01:three_prime_UTR 40.0%
CCAGTTCAGGTAATCTTAGA+AGG - Chr2:13132332-13132351 MsG0280007288.01.T01:intron 40.0%
CTCAATATTGCAGGAAGAAC+AGG - Chr2:13133127-13133146 MsG0280007288.01.T01:intron 40.0%
CTGAATGAGGGTAAAGTATG+TGG + Chr2:13129568-13129587 None:intergenic 40.0%
CTGTTGAAACTTGCAGCATA+TGG - Chr2:13131451-13131470 MsG0280007288.01.T01:intron 40.0%
GCAGTGGTAATAATGGCTTA+TGG - Chr2:13132034-13132053 MsG0280007288.01.T01:intron 40.0%
GCCATCTCAAATTCTCAATC+AGG + Chr2:13133199-13133218 None:intergenic 40.0%
GCTTGATGTTCATCATTCCT+CGG + Chr2:13132920-13132939 None:intergenic 40.0%
GGATGGTATACCAAAATCAC+TGG + Chr2:13133065-13133084 None:intergenic 40.0%
GGTGGAAGAAAGAGCTTAAT+TGG + Chr2:13129427-13129446 None:intergenic 40.0%
TAACCAGCATGTCTTGAATC+TGG + Chr2:13133022-13133041 None:intergenic 40.0%
TAATCCCTACAGGTCATTGT+CGG - Chr2:13132754-13132773 MsG0280007288.01.T01:intron 40.0%
TACCCATGGTGTTCCAAAAA+AGG - Chr2:13131631-13131650 MsG0280007288.01.T01:intron 40.0%
TATAGCCCACAAACTAAGCT+AGG + Chr2:13133518-13133537 None:intergenic 40.0%
TCAAATCTGGATGTGGATGT+TGG - Chr2:13131886-13131905 MsG0280007288.01.T01:intron 40.0%
TCAACTTCTGCCAAAAAAGG+GGG - Chr2:13132522-13132541 MsG0280007288.01.T01:intron 40.0%
TCCTATGTCCGTAATGAAAC+CGG - Chr2:13132218-13132237 MsG0280007288.01.T01:intron 40.0%
TGAGAAATGGCTGAGCATAT+CGG + Chr2:13130740-13130759 None:intergenic 40.0%
TGGAAACCTAAACTTGATGC+TGG + Chr2:13132864-13132883 None:intergenic 40.0%
TGGCGAACTTAAAGGAGAAA+GGG + Chr2:13131035-13131054 None:intergenic 40.0%
TTAATGTTAGTGCGTAGCAG+TGG - Chr2:13132018-13132037 MsG0280007288.01.T01:intron 40.0%
TTAGAGGTGAAAGAAGGAGA+AGG + Chr2:13129752-13129771 None:intergenic 40.0%
TTAGTCCTAGACGAGATATC+AGG - Chr2:13130698-13130717 MsG0280007288.01.T01:intron 40.0%
TTTGGTAAAAGACCGTTCGT+CGG + Chr2:13129533-13129552 None:intergenic 40.0%
TTTGTGGTCAAATCTGGATG+TGG - Chr2:13131879-13131898 MsG0280007288.01.T01:intron 40.0%
! ATGCTTCCTAGCTTAGTTTG+TGG - Chr2:13133509-13133528 MsG0280007288.01.T01:CDS 40.0%
! CTTTGGAAGAAAACCCATAG+AGG + Chr2:13130412-13130431 None:intergenic 40.0%
! GAACGGTCTTTTACCAAACA+CGG - Chr2:13129535-13129554 MsG0280007288.01.T01:three_prime_UTR 40.0%
! GAGAATTTGAGATGGCTTGT+GGG - Chr2:13133203-13133222 MsG0280007288.01.T01:intron 40.0%
! GGTATGAAGTCCAGTGATTT+TGG - Chr2:13133052-13133071 MsG0280007288.01.T01:intron 40.0%
! GTCTTTTACCAAACACGGAT+GGG - Chr2:13129540-13129559 MsG0280007288.01.T01:three_prime_UTR 40.0%
! TCTGATGGACAAATCATAGG+TGG - Chr2:13132278-13132297 MsG0280007288.01.T01:intron 40.0%
! TGAGAATTTGAGATGGCTTG+TGG - Chr2:13133202-13133221 MsG0280007288.01.T01:intron 40.0%
! TTTTGAATTTCTGCACCACC+TGG - Chr2:13130095-13130114 MsG0280007288.01.T01:CDS 40.0%
!! CCTTCTAAGATTACCTGAAC+TGG + Chr2:13132335-13132354 None:intergenic 40.0%
!! TGCTTCCTAGCTTAGTTTGT+GGG - Chr2:13133510-13133529 MsG0280007288.01.T01:CDS 40.0%
!!! TGCCTTTTTTGGAACACCAT+GGG + Chr2:13131636-13131655 None:intergenic 40.0%
AACAAGAAGGACACTAGTGC+TGG - Chr2:13132793-13132812 MsG0280007288.01.T01:intron 45.0%
AATCTGGATGTGGATGTTGG+AGG - Chr2:13131889-13131908 MsG0280007288.01.T01:intron 45.0%
ACGTATATCCTTAGCCACCA+CGG - Chr2:13130660-13130679 MsG0280007288.01.T01:intron 45.0%
AGACGAGATATCAGGTTTGG+AGG - Chr2:13130706-13130725 MsG0280007288.01.T01:intron 45.0%
ATAGTATGCGCCATCCGTTA+AGG - Chr2:13133304-13133323 MsG0280007288.01.T01:CDS 45.0%
ATGGAGCAAGCACCTTGAAA+CGG + Chr2:13133549-13133568 None:intergenic 45.0%
ATGTCCGTAATGAAACCGGA+GGG - Chr2:13132222-13132241 MsG0280007288.01.T01:intron 45.0%
ATTATCAGGTGGTGCTTGGT+AGG + Chr2:13132694-13132713 None:intergenic 45.0%
ATTGCAGGAAGAACAGGTCA+TGG - Chr2:13133133-13133152 MsG0280007288.01.T01:intron 45.0%
CAAAAAAGGGGGAAATGAGG+TGG - Chr2:13132533-13132552 MsG0280007288.01.T01:intron 45.0%
CAAAGACTGCTGGTATGTAG+TGG + Chr2:13133268-13133287 None:intergenic 45.0%
CAGAAGAAGCCACTGAATGA+GGG + Chr2:13129580-13129599 None:intergenic 45.0%
CATCCAGATTCAAGACATGC+TGG - Chr2:13133016-13133035 MsG0280007288.01.T01:intron 45.0%
CCAAACCTGATATCTCGTCT+AGG + Chr2:13130706-13130725 None:intergenic 45.0%
CCTAGACGAGATATCAGGTT+TGG - Chr2:13130703-13130722 MsG0280007288.01.T01:intron 45.0%
CGGATGGCGCATACTATAAA+TGG + Chr2:13133301-13133320 None:intergenic 45.0%
CTACCTTCAAGAGGACAGAT+AGG - Chr2:13131954-13131973 MsG0280007288.01.T01:intron 45.0%
GATGAACATCAAGCTATGGG+TGG - Chr2:13132926-13132945 MsG0280007288.01.T01:intron 45.0%
GATGGACAAATCATAGGTGG+TGG - Chr2:13132281-13132300 MsG0280007288.01.T01:intron 45.0%
GTGCGTAGCAGTGGTAATAA+TGG - Chr2:13132027-13132046 MsG0280007288.01.T01:intron 45.0%
GTGGCGAACTTAAAGGAGAA+AGG + Chr2:13131036-13131055 None:intergenic 45.0%
TAGTCAAACACCGTTGATGC+AGG + Chr2:13131110-13131129 None:intergenic 45.0%
TATGTCCGTAATGAAACCGG+AGG - Chr2:13132221-13132240 MsG0280007288.01.T01:intron 45.0%
TCCGGTTTCATTACGGACAT+AGG + Chr2:13132222-13132241 None:intergenic 45.0%
TCCTAAAACATCTTGGCTGG+TGG + Chr2:13131055-13131074 None:intergenic 45.0%
TGCCAAAAAAGGGGGAAATG+AGG - Chr2:13132530-13132549 MsG0280007288.01.T01:intron 45.0%
TGTAAGTTGCCATCACCAGT+TGG - Chr2:13132834-13132853 MsG0280007288.01.T01:intron 45.0%
TTGCAGGAAGAACAGGTCAT+GGG - Chr2:13133134-13133153 MsG0280007288.01.T01:intron 45.0%
TTGGTCATAGCCTCCATTCT+CGG + Chr2:13133173-13133192 None:intergenic 45.0%
! AACTGGACCAGCAGCTTTAA+GGG + Chr2:13132318-13132337 None:intergenic 45.0%
! ATGTACCGACAATGACCTGT+AGG + Chr2:13132762-13132781 None:intergenic 45.0%
! CAAATCATAGGTGGTGGTGT+TGG - Chr2:13132287-13132306 MsG0280007288.01.T01:intron 45.0%
! GGTCTTTTACCAAACACGGA+TGG - Chr2:13129539-13129558 MsG0280007288.01.T01:three_prime_UTR 45.0%
! TGTACCGACAATGACCTGTA+GGG + Chr2:13132761-13132780 None:intergenic 45.0%
!! GTTGCTGGTGTTGTTGTTGT+TGG + Chr2:13129460-13129479 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTGGTTG+TGG + Chr2:13129451-13129470 None:intergenic 45.0%
!! TGGTGATGGCAACTTACAGA+GGG + Chr2:13132832-13132851 None:intergenic 45.0%
!! TTATGGTAATGGGGTGATGC+AGG - Chr2:13129973-13129992 MsG0280007288.01.T01:CDS 45.0%
!!! CACCTCATTTCCCCCTTTTT+TGG + Chr2:13132535-13132554 None:intergenic 45.0%
!!! GGATGCACAAGTGCCTTTTT+TGG + Chr2:13131647-13131666 None:intergenic 45.0%
!!! GTGCCTTTTTTGGAACACCA+TGG + Chr2:13131637-13131656 None:intergenic 45.0%
!!! TGGAGTTTTGTTGCTGTTGC+TGG + Chr2:13129475-13129494 None:intergenic 45.0%
!! TTGTTTATTATTTATTATAA+AGG - Chr2:13130372-13130391 MsG0280007288.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - Chr2:13130238-13130257 MsG0280007288.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - Chr2:13130237-13130256 MsG0280007288.01.T01:intron 5.0%
AAGTGCCAAAACAACCGTGG+TGG + Chr2:13130677-13130696 None:intergenic 50.0%
ACCTGGTAAGTACAGTGACG+CGG - Chr2:13130112-13130131 MsG0280007288.01.T01:CDS 50.0%
AGCAAGCACCTTGAAACGGA+AGG + Chr2:13133545-13133564 None:intergenic 50.0%
ATGTTGCCTCCTGAAGATGC+TGG + Chr2:13131317-13131336 None:intergenic 50.0%
CAAAACAACCGTGGTGGCTA+AGG + Chr2:13130671-13130690 None:intergenic 50.0%
CACTGGACTTCATACCTGAC+AGG + Chr2:13133048-13133067 None:intergenic 50.0%
CGTCCTATCTGTCCTCTTGA+AGG + Chr2:13131960-13131979 None:intergenic 50.0%
CTACCTCTCTTCCTCTTAGC+TGG + Chr2:13129623-13129642 None:intergenic 50.0%
CTCAGCTTGAACCAGCTAAG+AGG - Chr2:13129609-13129628 MsG0280007288.01.T01:three_prime_UTR 50.0%
GAACCAGCTAAGAGGAAGAG+AGG - Chr2:13129617-13129636 MsG0280007288.01.T01:three_prime_UTR 50.0%
GAACTGGACCAGCAGCTTTA+AGG + Chr2:13132319-13132338 None:intergenic 50.0%
GCAAGCACCTTGAAACGGAA+GGG + Chr2:13133544-13133563 None:intergenic 50.0%
GCAGAAGAAGCCACTGAATG+AGG + Chr2:13129581-13129600 None:intergenic 50.0%
GGGGACACTCTAGTAACATC+TGG - Chr2:13130894-13130913 MsG0280007288.01.T01:intron 50.0%
GTCAGAAGCCACGACCTTAA+CGG + Chr2:13133321-13133340 None:intergenic 50.0%
TAAAGCTGCTGGTCCAGTTC+AGG - Chr2:13132319-13132338 MsG0280007288.01.T01:intron 50.0%
TACCAGCAGTCTTTGTCACG+AGG - Chr2:13133273-13133292 MsG0280007288.01.T01:CDS 50.0%
TAGGTGTGAAAGCAGGAAGG+TGG + Chr2:13132675-13132694 None:intergenic 50.0%
TGCACGCATCTGTGTGCTTA+TGG - Chr2:13131810-13131829 MsG0280007288.01.T01:intron 50.0%
TGCTTGGTAGGTGTGAAAGC+AGG + Chr2:13132682-13132701 None:intergenic 50.0%
TGGAAGAGTCGACTGTTTGG+TGG + Chr2:13132884-13132903 None:intergenic 50.0%
TGGTAGGTGTGAAAGCAGGA+AGG + Chr2:13132678-13132697 None:intergenic 50.0%
TGGTCATAGCCTCCATTCTC+GGG + Chr2:13133172-13133191 None:intergenic 50.0%
TTCGCCCTCCGGTTTCATTA+CGG + Chr2:13132229-13132248 None:intergenic 50.0%
! AAACAGTCGACTCTTCCAGC+GGG - Chr2:13132886-13132905 MsG0280007288.01.T01:intron 50.0%
! AAGAAGGACACTAGTGCTGG+TGG - Chr2:13132796-13132815 MsG0280007288.01.T01:intron 50.0%
! ATCATAGGTGGTGGTGTTGG+TGG - Chr2:13132290-13132309 MsG0280007288.01.T01:intron 50.0%
! CAAACAGTCGACTCTTCCAG+CGG - Chr2:13132885-13132904 MsG0280007288.01.T01:intron 50.0%
! CATGCTGGTTATGACCTGTC+AGG - Chr2:13133031-13133050 MsG0280007288.01.T01:intron 50.0%
! CATGTCATTGCTGTTGCTGC+TGG - Chr2:13130021-13130040 MsG0280007288.01.T01:CDS 50.0%
! CTCCTGAAGATGCTGGTTGA+CGG + Chr2:13131310-13131329 None:intergenic 50.0%
! CTTAGCCACCACGGTTGTTT+TGG - Chr2:13130669-13130688 MsG0280007288.01.T01:intron 50.0%
! GCCACCAGCCAAGATGTTTT+AGG - Chr2:13131051-13131070 MsG0280007288.01.T01:intron 50.0%
! TTAGCAGCTAGGGCTTGTTC+AGG + Chr2:13129665-13129684 None:intergenic 50.0%
! TTGGCTGGTGGCGAACTTAA+AGG + Chr2:13131043-13131062 None:intergenic 50.0%
!! ACGGAGAGAGGCATTAGAGA+TGG + Chr2:13131291-13131310 None:intergenic 50.0%
!! ACTGGACCAGCAGCTTTAAG+GGG + Chr2:13132317-13132336 None:intergenic 50.0%
!! CTGGTGATGGCAACTTACAG+AGG + Chr2:13132833-13132852 None:intergenic 50.0%
!! GACACTAGTGCTGGTGGAAA+AGG - Chr2:13132802-13132821 MsG0280007288.01.T01:intron 50.0%
!! GCTGGTGTTGTTGTTGTTGG+TGG + Chr2:13129457-13129476 None:intergenic 50.0%
!! GTTGTTGTTGGTGGTTGTGG+TGG + Chr2:13129448-13129467 None:intergenic 50.0%
!! TCATAGGTGGTGGTGTTGGT+GGG - Chr2:13132291-13132310 MsG0280007288.01.T01:intron 50.0%
AAGACCGTTCGTCGGAGATG+CGG + Chr2:13129525-13129544 None:intergenic 55.0%
AATGAAACCGGAGGGCGAAG+TGG - Chr2:13132230-13132249 MsG0280007288.01.T01:intron 55.0%
ACCTCCCAGGTCTACAGAGT+GGG - Chr2:13132988-13133007 MsG0280007288.01.T01:CDS 55.0%
ATGTGGGACCCATCCGTGTT+TGG + Chr2:13129551-13129570 None:intergenic 55.0%
CACCTCGTGACAAAGACTGC+TGG + Chr2:13133278-13133297 None:intergenic 55.0%
CCTGGTAAGTACAGTGACGC+GGG - Chr2:13130113-13130132 MsG0280007288.01.T01:CDS 55.0%
CGCTGGAAGAGTCGACTGTT+TGG + Chr2:13132887-13132906 None:intergenic 55.0%
CGTCAACCAGCATCTTCAGG+AGG - Chr2:13131308-13131327 MsG0280007288.01.T01:intron 55.0%
CTCCGTCAACCAGCATCTTC+AGG - Chr2:13131305-13131324 MsG0280007288.01.T01:intron 55.0%
GAAGCCACGACCTTAACGGA+TGG + Chr2:13133317-13133336 None:intergenic 55.0%
GATGCAGGCAATGCAGGACA+AGG - Chr2:13129988-13130007 MsG0280007288.01.T01:CDS 55.0%
GCGTCACTGTACTTACCAGG+TGG + Chr2:13130113-13130132 None:intergenic 55.0%
GGCGAGCCAGCATCAAGTTT+AGG - Chr2:13132855-13132874 MsG0280007288.01.T01:intron 55.0%
GGTTCGATGGCACCAATGTC+TGG - Chr2:13133224-13133243 MsG0280007288.01.T01:CDS 55.0%
TCTCACCAGTCTCCCGAGAA+TGG - Chr2:13133157-13133176 MsG0280007288.01.T01:intron 55.0%
! AGATGCTGGTTGACGGAGAG+AGG + Chr2:13131303-13131322 None:intergenic 55.0%
! CATTGCTGTTGCTGCTGGTG+AGG - Chr2:13130026-13130045 MsG0280007288.01.T01:CDS 55.0%
! GAGATGGCTTGTGGGTTCGA+TGG - Chr2:13133211-13133230 MsG0280007288.01.T01:intron 55.0%
!! GGTGGTGGTGGTTGTGGATA+CGG + Chr2:13129501-13129520 None:intergenic 55.0%
!! GTTGTTGGTGGTTGTGGTGG+TGG + Chr2:13129445-13129464 None:intergenic 55.0%
AAGACCACCACTTCGCCCTC+CGG + Chr2:13132240-13132259 None:intergenic 60.0%
ACCACCGCATCTCCGACGAA+CGG - Chr2:13129518-13129537 MsG0280007288.01.T01:three_prime_UTR 60.0%
ACTCCCCCACTCTGTAGACC+TGG + Chr2:13132996-13133015 None:intergenic 60.0%
AGCCTCCATTCTCGGGAGAC+TGG + Chr2:13133165-13133184 None:intergenic 60.0%
CACCAGTCTCCCGAGAATGG+AGG - Chr2:13133160-13133179 MsG0280007288.01.T01:intron 60.0%
CACCTCCCAGGTCTACAGAG+TGG - Chr2:13132987-13133006 MsG0280007288.01.T01:CDS 60.0%
CCCGCGTCACTGTACTTACC+AGG + Chr2:13130116-13130135 None:intergenic 60.0%
CCTCCCAGGTCTACAGAGTG+GGG - Chr2:13132989-13133008 MsG0280007288.01.T01:CDS 60.0%
CTCCCAGGTCTACAGAGTGG+GGG - Chr2:13132990-13133009 MsG0280007288.01.T01:CDS 60.0%
CTCCCCCACTCTGTAGACCT+GGG + Chr2:13132995-13133014 None:intergenic 60.0%
GGTGGTTGTGGATACGGTGG+TGG + Chr2:13129495-13129514 None:intergenic 60.0%
GTTTGCACGTGACACCTCCC+AGG - Chr2:13132975-13132994 MsG0280007288.01.T01:CDS 60.0%
TCCAGCGGGAATCCAATCCG+AGG - Chr2:13132900-13132919 MsG0280007288.01.T01:intron 60.0%
TGCGCCATCCGTTAAGGTCG+TGG - Chr2:13133310-13133329 MsG0280007288.01.T01:CDS 60.0%
TGGGGTGATGCAGGCAATGC+AGG - Chr2:13129982-13130001 MsG0280007288.01.T01:CDS 60.0%
! GGTGGTGGTTGTGGATACGG+TGG + Chr2:13129498-13129517 None:intergenic 60.0%
! TCCTCGGATTGGATTCCCGC+TGG + Chr2:13132904-13132923 None:intergenic 60.0%
!! CTTGATGCTGGCTCGCCAAC+TGG + Chr2:13132852-13132871 None:intergenic 60.0%
ACCGTTCGTCGGAGATGCGG+TGG + Chr2:13129522-13129541 None:intergenic 65.0%
CCCCACTCTGTAGACCTGGG+AGG + Chr2:13132992-13133011 None:intergenic 65.0%
GAAACCGGAGGGCGAAGTGG+TGG - Chr2:13132233-13132252 MsG0280007288.01.T01:intron 65.0%
GGTGGGCCCCTTAAAGCTGC+TGG - Chr2:13132308-13132327 MsG0280007288.01.T01:intron 65.0%
GTTCGTCGGAGATGCGGTGG+TGG + Chr2:13129519-13129538 None:intergenic 65.0%
!! GCTGGCTCGCCAACTGGTGA+TGG + Chr2:13132846-13132865 None:intergenic 65.0%
!! TGCGGTGGTGGTGGTGGTTG+TGG + Chr2:13129507-13129526 None:intergenic 65.0%
! CGTCGGAGATGCGGTGGTGG+TGG + Chr2:13129516-13129535 None:intergenic 70.0%
!! CGGAGATGCGGTGGTGGTGG+TGG + Chr2:13129513-13129532 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 13129391 13133617 13129391 ID=MsG0280007288.01;Name=MsG0280007288.01
Chr2 mRNA 13129391 13133617 13129391 ID=MsG0280007288.01.T01;Parent=MsG0280007288.01;Name=MsG0280007288.01.T01;_AED=0.49;_eAED=0.49;_QI=16|0.8|0.66|1|1|1|6|413|303
Chr2 exon 13129391 13129868 13129391 ID=MsG0280007288.01.T01:exon:5552;Parent=MsG0280007288.01.T01
Chr2 exon 13129956 13130155 13129956 ID=MsG0280007288.01.T01:exon:5551;Parent=MsG0280007288.01.T01
Chr2 exon 13130746 13130819 13130746 ID=MsG0280007288.01.T01:exon:5550;Parent=MsG0280007288.01.T01
Chr2 exon 13131662 13131793 13131662 ID=MsG0280007288.01.T01:exon:5549;Parent=MsG0280007288.01.T01
Chr2 exon 13132961 13133013 13132961 ID=MsG0280007288.01.T01:exon:5548;Parent=MsG0280007288.01.T01
Chr2 exon 13133214 13133617 13133214 ID=MsG0280007288.01.T01:exon:5547;Parent=MsG0280007288.01.T01
Chr2 five_prime_UTR 13133602 13133617 13133602 ID=MsG0280007288.01.T01:five_prime_utr;Parent=MsG0280007288.01.T01
Chr2 CDS 13133214 13133601 13133214 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 CDS 13132961 13133013 13132961 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 CDS 13131662 13131793 13131662 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 CDS 13130746 13130819 13130746 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 CDS 13129956 13130155 13129956 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 CDS 13129804 13129868 13129804 ID=MsG0280007288.01.T01:cds;Parent=MsG0280007288.01.T01
Chr2 three_prime_UTR 13129391 13129803 13129391 ID=MsG0280007288.01.T01:three_prime_utr;Parent=MsG0280007288.01.T01
Gene Sequence

>MsG0280007288.01.T01

ATGGACTCCAATGACAACCAATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAACACCAGCAACAGCAACAAAACTCCACCACCGTATCCACAACCACCACCACCACCGCATCTCCGACGAACGGTCTTTTACCAAACACGGATGGGTCCCACATACTTTACCCTCATTCAGTGGCTTCTTCTGCTGTTTCTTCTCAGCTTGAACCAGCTAAGAGGAAGAGAGGTAGACCTAGAAAATATGGTACTCCTGAACAAGCCCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCTCCCACTCTTGATAACAACAAGAATACTCACTCTTTCTCTCCTTCTCCTTCTTTCACCTCTAAGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGGCAGAAAATTATGCAATTTATGCAACAAAATAGGGGTGAGATATGCATTATGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTCCGTCAACCAGCATCTTCAGGAGGCAACATTATGTATGAGGGTCGGTTTGATATCATTTCGCTTACTGTTCCTATGTCCGTAATGAAACCGGAGGGCGAAGTGGTGGTCTTAGCTTGGCGAGCCAGCATCAAGTTTAGGTTTCCACCAAACAGTCGACTCTTCCAGCGGGAATCCAATCCGAGGAATGATGAACATCAAGCTATGGGTGGAAGCCATTACATGATTCAACAACTTGGTTTGCACGTGACACCTCCCAGGTCTACAGAGTGGGGGAGTCATCCAGATTCAAGACATGCTGGTTATGACCTGTCAGGAAGAACAGGTCATGGGTCTCACCAGTCTCCCGAGAATGGAGGCTATGACCAAATTCCTGATTGA

Protein sequence

>MsG0280007288.01.T01

MDSNDNQLSSFFHHHNHQQQQHQQQQQNSTTVSTTTTTTASPTNGLLPNTDGSHILYPHSVASSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTLDNNKNTHSFSPSPSFTSKKSHSLSLGNAGQGFSAHVIAVAAGEDVGQKIMQFMQQNRGEICIMSASGSISNASLRQPASSGGNIMYEGRFDIISLTVPMSVMKPEGEVVVLAWRASIKFRFPPNSRLFQRESNPRNDEHQAMGGSHYMIQQLGLHVTPPRSTEWGSHPDSRHAGYDLSGRTGHGSHQSPENGGYDQIPD*