AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039998.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039998.01.T01 MTR_3g095240 78.007 291 18 3 25 315 1 245 8.85e-151 423
MsG0780039998.01.T01 MTR_3g095260 72.624 263 26 3 25 287 1 217 4.71e-90 269
MsG0780039998.01.T01 MTR_3g095250 71.321 265 28 4 25 287 1 219 3.62e-79 241
MsG0780039998.01.T01 MTR_7g059030 44.149 188 59 3 25 212 1 142 1.92e-40 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039998.01.T01 AT1G76010 52.577 194 45 4 25 217 1 148 5.95e-50 169
MsG0780039998.01.T01 AT1G76010 52.577 194 45 4 25 217 1 148 5.95e-50 169
MsG0780039998.01.T01 AT1G20220 51.546 194 47 4 25 217 1 148 4.52e-48 164
MsG0780039998.01.T01 AT3G07030 43.094 181 57 3 25 205 1 135 2.50e-36 135
MsG0780039998.01.T01 AT3G07030 43.094 181 57 3 25 205 1 135 5.36e-36 134
MsG0780039998.01.T01 AT3G07030 35.714 238 81 5 25 238 1 190 1.58e-32 125
MsG0780039998.01.T01 AT3G07030 35.714 238 81 5 25 238 1 190 1.58e-32 125
MsG0780039998.01.T01 AT3G07030 35.714 238 81 5 25 238 1 190 1.78e-32 125

Find 103 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGCTGCTCTCAATTT+TGG 0.070263 7:-71774467 MsG0780039998.01.T01:CDS
TCCTCTTCATATTCATTTAA+AGG 0.086684 7:+71771668 None:intergenic
GTGCATGGGGTCGTGCTTTC+CGG 0.114627 7:-71769117 MsG0780039998.01.T01:CDS
AGTGATTTGATTTAGGTTAT+AGG 0.227035 7:-71772893 MsG0780039998.01.T01:intron
CTGCATCAGAACACTATTAT+TGG 0.280228 7:-71772554 MsG0780039998.01.T01:CDS
GACAATTACTGAGCTAATTA+AGG 0.303705 7:-71772687 MsG0780039998.01.T01:intron
GCAGAGGGCGTGGCCGTGCA+TGG 0.313343 7:-71769132 MsG0780039998.01.T01:CDS
TGCATGGGGTCGTGCTTTCC+GGG 0.322620 7:-71769116 MsG0780039998.01.T01:CDS
CAGAGGGCGTGGCCGTGCAT+GGG 0.335065 7:-71769131 MsG0780039998.01.T01:CDS
CGTGGTCGTGGAAGGGGCAG+AGG 0.366501 7:-71771518 MsG0780039998.01.T01:CDS
GTTGATAGGGCTATCTGCCT+TGG 0.366788 7:+71773179 None:intergenic
GCTATGGTGCCCAGCCGGTT+GGG 0.367246 7:-71769081 MsG0780039998.01.T01:CDS
CTCTTCCCCTTCCACGACCT+TGG 0.370286 7:+71768666 None:intergenic
TCGCTTGTCCCATTGCTTTG+AGG 0.394186 7:+71772721 None:intergenic
TACGAAAGTTAAGATTGCTT+TGG 0.398115 7:-71774507 MsG0780039998.01.T01:CDS
GCTTTCCGGGGACGAGGACT+TGG 0.400953 7:-71769103 MsG0780039998.01.T01:CDS
GGCTATGGTGCCCAGCCGGT+TGG 0.403459 7:-71769082 MsG0780039998.01.T01:CDS
CGTGGAAGGGGCAGAGGTAG+AGG 0.403605 7:-71771512 MsG0780039998.01.T01:CDS
CAGATATCAACCTCCTCTTC+CGG 0.410668 7:-71771705 MsG0780039998.01.T01:CDS
TTGATAGGGCTATCTGCCTT+GGG 0.411012 7:+71773180 None:intergenic
CGTGGAAGGGGAAGAGGCCG+TGG 0.425270 7:-71768659 MsG0780039998.01.T01:CDS
GCTCGCCAAGGATGCGAGGA+AGG 0.425647 7:-71771544 MsG0780039998.01.T01:CDS
CAAGGTCGTGGAAGGGGAAG+AGG 0.427428 7:-71768665 MsG0780039998.01.T01:CDS
GTTTGTGTTATTCAGATGGA+TGG 0.429565 7:-71773222 MsG0780039998.01.T01:intron
TCTTTGTAGGAATGTACAAT+GGG 0.440217 7:-71769201 MsG0780039998.01.T01:intron
GGCTATGGTGGCAGAGGGCG+TGG 0.451114 7:-71769142 MsG0780039998.01.T01:CDS
AGGGGAAGAGGCCGTGGACG+TGG 0.457525 7:-71768653 MsG0780039998.01.T01:CDS
TCGCCAAGGATGCGAGGAAG+GGG 0.461675 7:-71771542 MsG0780039998.01.T01:CDS
CGTGGACGTGGTCGTGATGC+TGG 0.462697 7:-71768641 MsG0780039998.01.T01:CDS
AGGGGCAGAGGTAGAGGTAG+AGG 0.463345 7:-71771506 MsG0780039998.01.T01:intron
TATGATGGTGGACGTGGCTA+TGG 0.467843 7:-71769157 MsG0780039998.01.T01:CDS
GGACGTGGCTATGGTGGCAG+AGG 0.470972 7:-71769148 MsG0780039998.01.T01:CDS
CTCGCCAAGGATGCGAGGAA+GGG 0.475876 7:-71771543 MsG0780039998.01.T01:CDS
GAGCTGGATACATCCTCCAC+TGG 0.497182 7:-71772338 MsG0780039998.01.T01:CDS
TTGTTTCAGAGAAGGATTGT+TGG 0.498148 7:-71772578 MsG0780039998.01.T01:intron
TACTTTGTCAAAGAAAGAGC+TGG 0.498781 7:-71772354 MsG0780039998.01.T01:CDS
TGTCATAATACCCAACCGGC+TGG 0.498971 7:+71769071 None:intergenic
CGGGGACGAGGACTTGGCTA+TGG 0.507363 7:-71769097 MsG0780039998.01.T01:CDS
CAATGAAAACATACGGAAGA+AGG 0.509927 7:+71772489 None:intergenic
GGTCGTGCTTTCCGGGGACG+AGG 0.513423 7:-71769109 MsG0780039998.01.T01:CDS
AGCAGCTGCTTAGTTAGAAG+AGG 0.514892 7:-71768612 MsG0780039998.01.T01:exon
GAAATCGTCCTCAAAGCAAT+GGG 0.517050 7:-71772729 MsG0780039998.01.T01:CDS
TTCTTTGTAGGAATGTACAA+TGG 0.517620 7:-71769202 MsG0780039998.01.T01:intron
GCATTCTTACCACGTGGGGC+AGG 0.518516 7:+71769028 None:intergenic
TTTACTTGATCAGCCGGAAG+AGG 0.519336 7:+71771692 None:intergenic
TTAAAATTATAGATGTTACA+AGG 0.522074 7:+71768488 None:intergenic
GTTTCTCATCCTTCCTTGAG+TGG 0.523264 7:+71773137 None:intergenic
CCATTGTCATAATACCCAAC+CGG 0.524799 7:+71769067 None:intergenic
AACTACAAAATCAAAACTAC+AGG 0.529268 7:+71768516 None:intergenic
ATTTGAGTCGTTCAGTGTTG+CGG 0.530588 7:-71768546 MsG0780039998.01.T01:three_prime_UTR
GAATATGGTGATGGTTATGA+TGG 0.530946 7:-71769172 MsG0780039998.01.T01:CDS
ACTTGGCTATGGTGCCCAGC+CGG 0.535949 7:-71769086 MsG0780039998.01.T01:CDS
CTCTCGCATTCTTACCACGT+GGG 0.538696 7:+71769023 None:intergenic
AGAGGGCGTGGCCGTGCATG+GGG 0.540930 7:-71769130 MsG0780039998.01.T01:CDS
GTAGGCCAAGGTCGTGGAAG+GGG 0.542475 7:-71768671 MsG0780039998.01.T01:intron
TTCTTACCACGTGGGGCAGG+TGG 0.545741 7:+71769031 None:intergenic
TTGTAGGCCAAGGTCGTGGA+AGG 0.551070 7:-71768673 MsG0780039998.01.T01:intron
TTTGTGTTATTCAGATGGAT+GGG 0.551419 7:-71773221 MsG0780039998.01.T01:intron
AGAAATCGTCCTCAAAGCAA+TGG 0.552556 7:-71772730 MsG0780039998.01.T01:CDS
TTACTTGTAGGCCAAGGTCG+TGG 0.554307 7:-71768677 MsG0780039998.01.T01:intron
GGGAAAACAATGAAAACATA+CGG 0.554838 7:+71772482 None:intergenic
GTCATAATACCCAACCGGCT+GGG 0.558897 7:+71769072 None:intergenic
GGAAAGCACGACCCCATGCA+CGG 0.559235 7:+71769119 None:intergenic
CAACTGATATAACTGACACA+TGG 0.565866 7:-71772529 MsG0780039998.01.T01:CDS
GACGTGGCTATGGTGGCAGA+GGG 0.566506 7:-71769147 MsG0780039998.01.T01:CDS
TAGTTTATATATGCACAGCA+TGG 0.569935 7:-71772442 MsG0780039998.01.T01:CDS
TTCAGATGGATGGGTATCAG+AGG 0.572449 7:-71773212 MsG0780039998.01.T01:intron
ACATGGGAACCACTTGAAGA+AGG 0.580775 7:-71772512 MsG0780039998.01.T01:CDS
CATAGCCAAGTCCTCGTCCC+CGG 0.582957 7:+71769098 None:intergenic
GGAAGAAGGCCTTCTTCAAG+TGG 0.583553 7:+71772503 None:intergenic
ACCTTTAAATGAATATGAAG+AGG 0.587328 7:-71771669 MsG0780039998.01.T01:CDS
GATGGTTATGATGGTGGACG+TGG 0.587716 7:-71769163 MsG0780039998.01.T01:CDS
ACTATTTGACAAAGTAACAC+AGG 0.587944 7:+71772461 None:intergenic
CGCCAAGGATGCGAGGAAGG+GGG 0.588165 7:-71771541 MsG0780039998.01.T01:CDS
TTAAATGAATATGAAGAGGA+AGG 0.589261 7:-71771665 MsG0780039998.01.T01:CDS
TCCTTCCTTGAGTGGTAATG+CGG 0.591117 7:+71773145 None:intergenic
ACTTGATCAGCCGGAAGAGG+AGG 0.591207 7:+71771695 None:intergenic
TATGGTGATGGTTATGATGG+TGG 0.591644 7:-71769169 MsG0780039998.01.T01:CDS
AGTTTATATATGCACAGCAT+GGG 0.593075 7:-71772441 MsG0780039998.01.T01:CDS
GATGGTGGACGTGGCTATGG+TGG 0.594069 7:-71769154 MsG0780039998.01.T01:CDS
AACTGATATAACTGACACAT+GGG 0.600887 7:-71772528 MsG0780039998.01.T01:CDS
GAGATCCGCATTACCACTCA+AGG 0.607382 7:-71773150 MsG0780039998.01.T01:CDS
TAAAATTATAGATGTTACAA+GGG 0.608070 7:+71768489 None:intergenic
AATGAATATGAAGAGGAAGG+AGG 0.609498 7:-71771662 MsG0780039998.01.T01:intron
AGCTGGATACATCCTCCACT+GGG 0.613534 7:-71772337 MsG0780039998.01.T01:intron
CCGGTTGGGTATTATGACAA+TGG 0.619666 7:-71769067 MsG0780039998.01.T01:CDS
GCATGGGGTCGTGCTTTCCG+GGG 0.624471 7:-71769115 MsG0780039998.01.T01:CDS
CTAACTAAGCAGCTGCTACA+CGG 0.626764 7:+71768618 None:intergenic
TGTAGGCCAAGGTCGTGGAA+GGG 0.628430 7:-71768672 MsG0780039998.01.T01:intron
GATACACAGAAGGCTCGCCA+AGG 0.633168 7:-71771556 MsG0780039998.01.T01:intron
TCCGCATTACCACTCAAGGA+AGG 0.635560 7:-71773146 MsG0780039998.01.T01:CDS
AAATCAAAACTACAGGAACA+TGG 0.637668 7:+71768523 None:intergenic
CAGCATCACGACCACGTCCA+CGG 0.637764 7:+71768642 None:intergenic
GAAGGCTCGCCAAGGATGCG+AGG 0.639147 7:-71771548 MsG0780039998.01.T01:CDS
TCAGATGGATGGGTATCAGA+GGG 0.640975 7:-71773211 MsG0780039998.01.T01:intron
CTATTTGACAAAGTAACACA+GGG 0.647690 7:+71772462 None:intergenic
TTTGTAGGAATGTACAATGG+GGG 0.656698 7:-71769199 MsG0780039998.01.T01:intron
TGAAAGTTCATACCCAGTGG+AGG 0.661269 7:+71772325 None:intergenic
TCTCGCATTCTTACCACGTG+GGG 0.665860 7:+71769024 None:intergenic
GATGGATGGGTATCAGAGGG+TGG 0.667174 7:-71773208 MsG0780039998.01.T01:CDS
TCAGAGGGTGGAGAAACCCA+AGG 0.675762 7:-71773196 MsG0780039998.01.T01:CDS
CTTTGTAGGAATGTACAATG+GGG 0.692917 7:-71769200 MsG0780039998.01.T01:intron
GATGCACCACCTGCCCCACG+TGG 0.716669 7:-71769037 MsG0780039998.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATATA+CGG - Chr7:71768572-71768591 MsG0780039998.01.T01:three_prime_UTR 0.0%
!! TAATAATAATAATAAGCTTT+CGG + Chr7:71772610-71772629 None:intergenic 10.0%
!! TATTATTAATAGTAATTTAC+TGG - Chr7:71772694-71772713 MsG0780039998.01.T01:CDS 10.0%
!!! AAGAAAATTTTGTATTTTAA+AGG + Chr7:71773644-71773663 None:intergenic 10.0%
!!! ATAACTAAATCTTTTTTTTT+TGG - Chr7:71768608-71768627 MsG0780039998.01.T01:exon 10.0%
!!! CTTATTTGTTTATTTTATTT+GGG - Chr7:71774310-71774329 MsG0780039998.01.T01:intron 10.0%
!!! GTTTTATGAAAATTAAAAAA+GGG - Chr7:71768924-71768943 MsG0780039998.01.T01:intron 10.0%
!!! TTTTTTATTAACAACTAATT+GGG + Chr7:71771958-71771977 None:intergenic 10.0%
!!! TTTTTTTATTAACAACTAAT+TGG + Chr7:71771959-71771978 None:intergenic 10.0%
!! AAAAAAACCTTGTAAAAAAT+TGG - Chr7:71768787-71768806 MsG0780039998.01.T01:intron 15.0%
!! AAAAAACCTTGTAAAAAATT+GGG - Chr7:71768788-71768807 MsG0780039998.01.T01:intron 15.0%
!! AGACGAATTTAAATAATTAA+AGG - Chr7:71771518-71771537 MsG0780039998.01.T01:CDS 15.0%
!! ATAATTAAAGGGATTAAATA+TGG - Chr7:71771530-71771549 MsG0780039998.01.T01:CDS 15.0%
!! GACGAATTTAAATAATTAAA+GGG - Chr7:71771519-71771538 MsG0780039998.01.T01:CDS 15.0%
!! TAAAATTATAGATGTTACAA+GGG + Chr7:71774396-71774415 None:intergenic 15.0%
!! TTAAAATTATAGATGTTACA+AGG + Chr7:71774397-71774416 None:intergenic 15.0%
!!! ATTTTATAGTGATTTGATTT+AGG - Chr7:71769982-71770001 MsG0780039998.01.T01:intron 15.0%
!!! GCTTATTTGTTTATTTTATT+TGG - Chr7:71774309-71774328 MsG0780039998.01.T01:intron 15.0%
!!! GGTTTTATGAAAATTAAAAA+AGG - Chr7:71768923-71768942 MsG0780039998.01.T01:intron 15.0%
!!! GTGTTATTTTTATTAATTAC+CGG - Chr7:71772886-71772905 MsG0780039998.01.T01:intron 15.0%
!!! GTTTATTTCTTTTAAACAAT+TGG + Chr7:71769556-71769575 None:intergenic 15.0%
!!! TTAACTTTTGTTTTCTAATA+AGG - Chr7:71771002-71771021 MsG0780039998.01.T01:intron 15.0%
!!! TTTTTATTAACAACTAATTG+GGG + Chr7:71771957-71771976 None:intergenic 15.0%
!! AAAACTTGTGAGTTAATAAT+GGG - Chr7:71772316-71772335 MsG0780039998.01.T01:intron 20.0%
!! ATACAAAATGTATTCTTTGT+AGG - Chr7:71773668-71773687 MsG0780039998.01.T01:intron 20.0%
!! ATTAAATTGTGGAATAATGT+TGG - Chr7:71772494-71772513 MsG0780039998.01.T01:CDS 20.0%
!! GCAATAAAAGAAAAGAAATT+AGG - Chr7:71771992-71772011 MsG0780039998.01.T01:intron 20.0%
!! TAAAAAAAACAAGTTTCACT+CGG + Chr7:71769957-71769976 None:intergenic 20.0%
!! TAGAGATTTAATGAAATTAG+AGG - Chr7:71772126-71772145 MsG0780039998.01.T01:intron 20.0%
!! TATATATATATAAACTCTGC+CGG + Chr7:71772908-71772927 None:intergenic 20.0%
!! TATTAATAGTAATTTACTGG+CGG - Chr7:71772697-71772716 MsG0780039998.01.T01:CDS 20.0%
!! TGTTTCGATTTAATTGTTTA+TGG - Chr7:71769606-71769625 MsG0780039998.01.T01:intron 20.0%
!! TTAAATTGTGGAATAATGTT+GGG - Chr7:71772495-71772514 MsG0780039998.01.T01:CDS 20.0%
!! TTATTATTACCAAATAAAGG+CGG - Chr7:71772805-71772824 MsG0780039998.01.T01:intron 20.0%
!! TTTGATGTTATATTATCGTA+TGG - Chr7:71773888-71773907 MsG0780039998.01.T01:intron 20.0%
!! TTTGCTTATTTAATTGTGAT+CGG - Chr7:71771417-71771436 MsG0780039998.01.T01:intron 20.0%
!!! AAATTTAGTAACACTTTTGA+GGG + Chr7:71771656-71771675 None:intergenic 20.0%
!!! ATGTCAATTCATGTATTTTA+AGG - Chr7:71773514-71773533 MsG0780039998.01.T01:intron 20.0%
!!! CTAATTTCTGAAATTGAAAA+TGG - Chr7:71769342-71769361 MsG0780039998.01.T01:intron 20.0%
!!! CTGTTTTTGATATTGTTTTT+AGG - Chr7:71769471-71769490 MsG0780039998.01.T01:intron 20.0%
!!! GTGTTTAATTATAGCATTTT+TGG - Chr7:71774514-71774533 MsG0780039998.01.T01:CDS 20.0%
!!! TAAATTTAGTAACACTTTTG+AGG + Chr7:71771657-71771676 None:intergenic 20.0%
!!! TATTTCTTTTGTTTAGACTT+TGG - Chr7:71774439-71774458 MsG0780039998.01.T01:intron 20.0%
!!! TTTTATTAACAACTAATTGG+GGG + Chr7:71771956-71771975 None:intergenic 20.0%
! AAACTTGTGAGTTAATAATG+GGG - Chr7:71772317-71772336 MsG0780039998.01.T01:intron 25.0%
! AACAAAACTATCAAACATAG+TGG + Chr7:71771098-71771117 None:intergenic 25.0%
! AACAAGGATTTGTGTTTATA+CGG - Chr7:71772243-71772262 MsG0780039998.01.T01:intron 25.0%
! AACAATTGAGAAAAAACACA+AGG + Chr7:71769418-71769437 None:intergenic 25.0%
! AACTAAATCTCTTTCTCTAT+AGG - Chr7:71768637-71768656 MsG0780039998.01.T01:CDS 25.0%
! AACTACAAAATCAAAACTAC+AGG + Chr7:71774369-71774388 None:intergenic 25.0%
! ACAAAACTATCAAACATAGT+GGG + Chr7:71771097-71771116 None:intergenic 25.0%
! ACCTTTAAATGAATATGAAG+AGG - Chr7:71771213-71771232 MsG0780039998.01.T01:intron 25.0%
! ACTAAATCTCTTTCTCTATA+GGG - Chr7:71768638-71768657 MsG0780039998.01.T01:CDS 25.0%
! ACTAACAAATAAATACGACA+AGG + Chr7:71774040-71774059 None:intergenic 25.0%
! AGAATTCTGATTCATAAAAG+GGG - Chr7:71769506-71769525 MsG0780039998.01.T01:intron 25.0%
! AGTGATATATGCAAGAAAAT+AGG - Chr7:71771575-71771594 MsG0780039998.01.T01:intron 25.0%
! ATAAATAACACATATAGAGG+CGG - Chr7:71772771-71772790 MsG0780039998.01.T01:intron 25.0%
! ATGCATGAATTACATAACTT+AGG - Chr7:71769301-71769320 MsG0780039998.01.T01:intron 25.0%
! ATGGTAATATGACTTTGAAT+TGG - Chr7:71772424-71772443 MsG0780039998.01.T01:CDS 25.0%
! ATTAATAGTAATTTACTGGC+GGG - Chr7:71772698-71772717 MsG0780039998.01.T01:CDS 25.0%
! ATTCTACAATCTATATGTCA+CGG + Chr7:71773586-71773605 None:intergenic 25.0%
! ATTTAAATACCACTCATATG+TGG - Chr7:71769840-71769859 MsG0780039998.01.T01:intron 25.0%
! CAAATCAATGTCTTAATTGA+AGG - Chr7:71772096-71772115 MsG0780039998.01.T01:intron 25.0%
! CAGAATTCTGATTCATAAAA+GGG - Chr7:71769505-71769524 MsG0780039998.01.T01:intron 25.0%
! CCTATAAATAACACATATAG+AGG - Chr7:71772768-71772787 MsG0780039998.01.T01:intron 25.0%
! CGGTTATTATTACCAAATAA+AGG - Chr7:71772802-71772821 MsG0780039998.01.T01:intron 25.0%
! GAAAACTTGTGAGTTAATAA+TGG - Chr7:71772315-71772334 MsG0780039998.01.T01:intron 25.0%
! GAAAATAGGAAATATCTATG+TGG - Chr7:71771589-71771608 MsG0780039998.01.T01:intron 25.0%
! GCTATTAAAAGTCAAAATTG+TGG + Chr7:71768687-71768706 None:intergenic 25.0%
! GTATAACTTATCTCTAACAT+TGG + Chr7:71771782-71771801 None:intergenic 25.0%
! GTATTTGTAGATAATGTCAT+TGG - Chr7:71772562-71772581 MsG0780039998.01.T01:CDS 25.0%
! GTTAAATGCATGAATTTAGT+TGG - Chr7:71772458-71772477 MsG0780039998.01.T01:CDS 25.0%
! TATTATTACCAAATAAAGGC+GGG - Chr7:71772806-71772825 MsG0780039998.01.T01:intron 25.0%
! TCAGAATTCTGATTCATAAA+AGG - Chr7:71769504-71769523 MsG0780039998.01.T01:intron 25.0%
! TCCTCTTCATATTCATTTAA+AGG + Chr7:71771217-71771236 None:intergenic 25.0%
! TGCATGAATTACATAACTTA+GGG - Chr7:71769302-71769321 MsG0780039998.01.T01:intron 25.0%
! TGGTAATATGACTTTGAATT+GGG - Chr7:71772425-71772444 MsG0780039998.01.T01:CDS 25.0%
! TTAAATGAATATGAAGAGGA+AGG - Chr7:71771217-71771236 MsG0780039998.01.T01:intron 25.0%
! TTCAATGTAGATTGATAGAA+GGG - Chr7:71770923-71770942 MsG0780039998.01.T01:intron 25.0%
! TTCTTTAAATGTATCATCTG+TGG - Chr7:71771128-71771147 MsG0780039998.01.T01:intron 25.0%
! TTTAAATACCACTCATATGT+GGG - Chr7:71769841-71769860 MsG0780039998.01.T01:intron 25.0%
! TTTCAACTCTGTAAGTATTA+AGG - Chr7:71771037-71771056 MsG0780039998.01.T01:intron 25.0%
! TTTCAATTTCAGAAATTAGC+TGG + Chr7:71769341-71769360 None:intergenic 25.0%
!! AGTGATTTGATTTAGGTTAT+AGG - Chr7:71769989-71770008 MsG0780039998.01.T01:intron 25.0%
!! AGTTTGCTTCAAAAATAACT+AGG + Chr7:71770644-71770663 None:intergenic 25.0%
!! CTTCAATTAAGACATTGATT+TGG + Chr7:71772098-71772117 None:intergenic 25.0%
!! CTTTTTCCATTTTCAATTTC+AGG + Chr7:71769351-71769370 None:intergenic 25.0%
!! GAATTTAGTTGGATACTTTT+GGG - Chr7:71772469-71772488 MsG0780039998.01.T01:CDS 25.0%
!! GATATCACTATGGATTAAAT+TGG - Chr7:71770232-71770251 MsG0780039998.01.T01:intron 25.0%
!! TACTAGTATTTTGTGTGTTT+TGG - Chr7:71773202-71773221 MsG0780039998.01.T01:CDS 25.0%
!! TATTTGGTAATAATAACCGT+AGG + Chr7:71772801-71772820 None:intergenic 25.0%
!! TGAATTTAGTTGGATACTTT+TGG - Chr7:71772468-71772487 MsG0780039998.01.T01:CDS 25.0%
!! TTTGAAACCTCTATATACTA+GGG - Chr7:71773409-71773428 MsG0780039998.01.T01:intron 25.0%
!! TTTTCTAAGTTGTTGAGAAA+TGG + Chr7:71772300-71772319 None:intergenic 25.0%
!!! AATTGGGGGTTTTTTTTTTT+TGG + Chr7:71771942-71771961 None:intergenic 25.0%
!!! ATCTAACCCAATTTTTTACA+AGG + Chr7:71768797-71768816 None:intergenic 25.0%
!!! ATTGGGGGTTTTTTTTTTTT+GGG + Chr7:71771941-71771960 None:intergenic 25.0%
!!! CCTCTATATGTGTTATTTAT+AGG + Chr7:71772771-71772790 None:intergenic 25.0%
!!! TATTTGTTAGTTTTCTTTGC+TGG - Chr7:71774049-71774068 MsG0780039998.01.T01:intron 25.0%
!!! TTTTGAAACCTCTATATACT+AGG - Chr7:71773408-71773427 MsG0780039998.01.T01:intron 25.0%
!!! TTTTTAAAGAGTGCTATAAC+AGG + Chr7:71768762-71768781 None:intergenic 25.0%
!!! TTTTTGAAGCAAACTACATA+AGG - Chr7:71770649-71770668 MsG0780039998.01.T01:intron 25.0%
!!! TTTTTTTTTTTGGGCTTCTT+TGG + Chr7:71771932-71771951 None:intergenic 25.0%
AAATCAAAACTACAGGAACA+TGG + Chr7:71774362-71774381 None:intergenic 30.0%
AACTGATATAACTGACACAT+GGG - Chr7:71770354-71770373 MsG0780039998.01.T01:intron 30.0%
AAGAAAACGCTATTGTTGAA+GGG - Chr7:71768867-71768886 MsG0780039998.01.T01:intron 30.0%
AAGCAAACTACATAAGGATT+AGG - Chr7:71770655-71770674 MsG0780039998.01.T01:intron 30.0%
ACTATTTGACAAAGTAACAC+AGG + Chr7:71770424-71770443 None:intergenic 30.0%
AGAGAATAGTTGTTCATCTT+TGG - Chr7:71773099-71773118 MsG0780039998.01.T01:intron 30.0%
AGTTTATATATGCACAGCAT+GGG - Chr7:71770441-71770460 MsG0780039998.01.T01:intron 30.0%
ATCATGAACCTGTACATAAT+TGG + Chr7:71773387-71773406 None:intergenic 30.0%
ATCTATGTGGAAGAAAATAC+AGG - Chr7:71771602-71771621 MsG0780039998.01.T01:intron 30.0%
ATGGTGTGTTAATTACTTGT+AGG - Chr7:71774193-71774212 MsG0780039998.01.T01:intron 30.0%
ATGTCTATTTGTTTCAGAGA+AGG - Chr7:71770296-71770315 MsG0780039998.01.T01:intron 30.0%
ATTATTACCAAATAAAGGCG+GGG - Chr7:71772807-71772826 MsG0780039998.01.T01:intron 30.0%
CTAATGCCTGAAATTGAAAA+TGG - Chr7:71769383-71769402 MsG0780039998.01.T01:intron 30.0%
CTATTTGACAAAGTAACACA+GGG + Chr7:71770423-71770442 None:intergenic 30.0%
CTTCAATGTAGATTGATAGA+AGG - Chr7:71770922-71770941 MsG0780039998.01.T01:intron 30.0%
GACAATTACTGAGCTAATTA+AGG - Chr7:71770195-71770214 MsG0780039998.01.T01:intron 30.0%
GGGAAAACAATGAAAACATA+CGG + Chr7:71770403-71770422 None:intergenic 30.0%
GGTAATATGACTTTGAATTG+GGG - Chr7:71772426-71772445 MsG0780039998.01.T01:CDS 30.0%
TAAATAACACATATAGAGGC+GGG - Chr7:71772772-71772791 MsG0780039998.01.T01:intron 30.0%
TAACGAGTAATATAACAAGC+AGG + Chr7:71772999-71773018 None:intergenic 30.0%
TAAGAAAACGCTATTGTTGA+AGG - Chr7:71768866-71768885 MsG0780039998.01.T01:intron 30.0%
TACGAAAGTTAAGATTGCTT+TGG - Chr7:71768375-71768394 MsG0780039998.01.T01:three_prime_UTR 30.0%
TAGATGAAGTGAAATGATCT+TGG - Chr7:71771892-71771911 MsG0780039998.01.T01:intron 30.0%
TAGTTTATATATGCACAGCA+TGG - Chr7:71770440-71770459 MsG0780039998.01.T01:intron 30.0%
TATCAATCAATTATGTCCCT+CGG + Chr7:71769898-71769917 None:intergenic 30.0%
TCTTCTGTCGCATATTTAAT+AGG + Chr7:71773984-71774003 None:intergenic 30.0%
TCTTTGTAGGAATGTACAAT+GGG - Chr7:71773681-71773700 MsG0780039998.01.T01:intron 30.0%
TGTAGATCAAGTTTATTGCT+GGG - Chr7:71772149-71772168 MsG0780039998.01.T01:intron 30.0%
TGTTAGAGTCATGTTAATCT+TGG + Chr7:71770733-71770752 None:intergenic 30.0%
TTAATAGTAATTTACTGGCG+GGG - Chr7:71772699-71772718 MsG0780039998.01.T01:CDS 30.0%
TTCTTTGTAGGAATGTACAA+TGG - Chr7:71773680-71773699 MsG0780039998.01.T01:intron 30.0%
TTGAAACCTCTATATACTAG+GGG - Chr7:71773410-71773429 MsG0780039998.01.T01:intron 30.0%
! ATGACTTGAGAATAAGGTTT+TGG - Chr7:71771440-71771459 MsG0780039998.01.T01:intron 30.0%
! ATTAGGTTTTTAATGTTCCG+AGG - Chr7:71769878-71769897 MsG0780039998.01.T01:intron 30.0%
! GTGAGAAGTTGTGATTTTTA+TGG - Chr7:71771277-71771296 MsG0780039998.01.T01:intron 30.0%
! TCACTATGGATTAAATTGGT+TGG - Chr7:71770236-71770255 MsG0780039998.01.T01:intron 30.0%
! TTAGGTTTTTAATGTTCCGA+GGG - Chr7:71769879-71769898 MsG0780039998.01.T01:intron 30.0%
! TTCATGCCTTATCTTTTGAT+TGG - Chr7:71770618-71770637 MsG0780039998.01.T01:intron 30.0%
! TTCATTTTACTTGCGTAGTT+TGG - Chr7:71770474-71770493 MsG0780039998.01.T01:intron 30.0%
! TTTGTGTTATTCAGATGGAT+GGG - Chr7:71769661-71769680 MsG0780039998.01.T01:intron 30.0%
!! ACTTTTGGGAGATTAAATTG+TGG - Chr7:71772483-71772502 MsG0780039998.01.T01:CDS 30.0%
!! CACAATTTTAATAGCGTTTC+TGG - Chr7:71768706-71768725 MsG0780039998.01.T01:intron 30.0%
!! CTGATTCATTGATTCTTAGA+AGG - Chr7:71772399-71772418 MsG0780039998.01.T01:CDS 30.0%
!! CTGTAATTTTGATACACAGA+AGG - Chr7:71771316-71771335 MsG0780039998.01.T01:intron 30.0%
!! GTTTTGTTATGTGTTTTGGA+AGG + Chr7:71769008-71769027 None:intergenic 30.0%
!!! GTGAGTTTTGTTATGTGTTT+TGG + Chr7:71769012-71769031 None:intergenic 30.0%
!!! TTTTGAGGGTATTACACTAT+AGG + Chr7:71771642-71771661 None:intergenic 30.0%
AAAAACCTAATCATACCCAG+TGG + Chr7:71769869-71769888 None:intergenic 35.0%
AAATAACACATATAGAGGCG+GGG - Chr7:71772773-71772792 MsG0780039998.01.T01:intron 35.0%
AATGAATATGAAGAGGAAGG+AGG - Chr7:71771220-71771239 MsG0780039998.01.T01:intron 35.0%
ACTAGGCCAATCAAAAGATA+AGG + Chr7:71770627-71770646 None:intergenic 35.0%
ACTCCAAAAGACATAATCAC+AGG + Chr7:71773171-71773190 None:intergenic 35.0%
AGAAAACGCTATTGTTGAAG+GGG - Chr7:71768868-71768887 MsG0780039998.01.T01:intron 35.0%
AGCAAAAAACTAGACAAGAG+TGG + Chr7:71773934-71773953 None:intergenic 35.0%
AGCCTATCATTACTAGTTAC+CGG - Chr7:71772738-71772757 MsG0780039998.01.T01:CDS 35.0%
AGGGTAGATAGATATCACTA+TGG - Chr7:71770222-71770241 MsG0780039998.01.T01:intron 35.0%
ATAGTTGTTCATCTTTGGTG+AGG - Chr7:71773104-71773123 MsG0780039998.01.T01:intron 35.0%
ATATAACAAGCAGGACATAG+TGG + Chr7:71772990-71773009 None:intergenic 35.0%
ATTACTCGTTATCTACTCAC+CGG - Chr7:71773008-71773027 MsG0780039998.01.T01:intron 35.0%
CAACTGATATAACTGACACA+TGG - Chr7:71770353-71770372 MsG0780039998.01.T01:intron 35.0%
CAATGAAAACATACGGAAGA+AGG + Chr7:71770396-71770415 None:intergenic 35.0%
CGCTCAAACTATAATTCAGT+TGG + Chr7:71773544-71773563 None:intergenic 35.0%
CTACAACGTCTACTTTAGTA+AGG + Chr7:71774091-71774110 None:intergenic 35.0%
CTGCATCAGAACACTATTAT+TGG - Chr7:71770328-71770347 MsG0780039998.01.T01:intron 35.0%
CTTTGTAGGAATGTACAATG+GGG - Chr7:71773682-71773701 MsG0780039998.01.T01:intron 35.0%
GCGACAGAAGAAAAATTACT+TGG - Chr7:71773993-71774012 MsG0780039998.01.T01:intron 35.0%
GGAAAACTCTGTCGAATTAT+CGG - Chr7:71773431-71773450 MsG0780039998.01.T01:intron 35.0%
GGTATGAACTTTCATGATGT+TGG - Chr7:71770566-71770585 MsG0780039998.01.T01:intron 35.0%
GTGTAGATCAAGTTTATTGC+TGG - Chr7:71772148-71772167 MsG0780039998.01.T01:intron 35.0%
GTTACTAACCTGAAAAAGAG+TGG + Chr7:71769787-71769806 None:intergenic 35.0%
TACTTTGTCAAAGAAAGAGC+TGG - Chr7:71770528-71770547 MsG0780039998.01.T01:intron 35.0%
TCAAGTTCACGTTGTAGTAA+TGG - Chr7:71774174-71774193 MsG0780039998.01.T01:intron 35.0%
TGTCTCTAAGTTTCGATAGA+CGG + Chr7:71772853-71772872 None:intergenic 35.0%
TGTTAATTACTTGTAGGCCA+AGG - Chr7:71774199-71774218 MsG0780039998.01.T01:intron 35.0%
TGTTTGAGCCAATTATGTAC+AGG - Chr7:71773376-71773395 MsG0780039998.01.T01:intron 35.0%
TTGTGGAATAATGTTGGGTT+TGG - Chr7:71772500-71772519 MsG0780039998.01.T01:CDS 35.0%
TTGTTTCAGAGAAGGATTGT+TGG - Chr7:71770304-71770323 MsG0780039998.01.T01:intron 35.0%
TTTGCTCTTGATGCTTAATC+TGG - Chr7:71773336-71773355 MsG0780039998.01.T01:intron 35.0%
TTTGTAGGAATGTACAATGG+GGG - Chr7:71773683-71773702 MsG0780039998.01.T01:intron 35.0%
! AAAAAGAAGAGAGTACGAAG+GGG - Chr7:71772020-71772039 MsG0780039998.01.T01:intron 35.0%
! AAAGGTTTTACTTGATCAGC+CGG + Chr7:71771199-71771218 None:intergenic 35.0%
! AGAAAAAGAAGAGAGTACGA+AGG - Chr7:71772018-71772037 MsG0780039998.01.T01:intron 35.0%
! AGTTTTCCCCTAGTATATAG+AGG + Chr7:71773419-71773438 None:intergenic 35.0%
! ATCAAACATAGTGGGAAAGA+CGG + Chr7:71771089-71771108 None:intergenic 35.0%
! ATGTGTTTTCTGTAGGAGAA+AGG - Chr7:71770123-71770142 MsG0780039998.01.T01:intron 35.0%
! GAAAAAGAAGAGAGTACGAA+GGG - Chr7:71772019-71772038 MsG0780039998.01.T01:intron 35.0%
! GGATCTCATTTTCGTTGATA+GGG + Chr7:71769719-71769738 None:intergenic 35.0%
! GTACCTGTGATTATGTCTTT+TGG - Chr7:71773165-71773184 MsG0780039998.01.T01:CDS 35.0%
! GTGTGTTTGTGTTATTCAGA+TGG - Chr7:71769656-71769675 MsG0780039998.01.T01:intron 35.0%
! GTTTGTGTTATTCAGATGGA+TGG - Chr7:71769660-71769679 MsG0780039998.01.T01:intron 35.0%
! TTATGCTACCACTCTTTTTC+AGG - Chr7:71769776-71769795 MsG0780039998.01.T01:intron 35.0%
! TTGCACTATGTGTTTTCTGT+AGG - Chr7:71770116-71770135 MsG0780039998.01.T01:intron 35.0%
! TTTTCACAAACGCTGTGTTT+GGG - Chr7:71768902-71768921 MsG0780039998.01.T01:intron 35.0%
!! CATTGATTCTTAGAAGGACA+TGG - Chr7:71772405-71772424 MsG0780039998.01.T01:CDS 35.0%
!! GAATATGGTGATGGTTATGA+TGG - Chr7:71773710-71773729 MsG0780039998.01.T01:intron 35.0%
ACTGAGCTAATTAAGGTGAG+AGG - Chr7:71770202-71770221 MsG0780039998.01.T01:intron 40.0%
AGAAATCGTCCTCAAAGCAA+TGG - Chr7:71770152-71770171 MsG0780039998.01.T01:intron 40.0%
AGTGTAACGTGCAATAAGGA+AGG - Chr7:71772173-71772192 MsG0780039998.01.T01:intron 40.0%
ATTTGAGTCGTTCAGTGTTG+CGG - Chr7:71774336-71774355 MsG0780039998.01.T01:intron 40.0%
CCATTGTCATAATACCCAAC+CGG + Chr7:71773818-71773837 None:intergenic 40.0%
CGGAAACTAAGGATAGAAGA+GGG - Chr7:71772218-71772237 MsG0780039998.01.T01:intron 40.0%
CTATCATTACTAGTTACCGG+CGG - Chr7:71772741-71772760 MsG0780039998.01.T01:CDS 40.0%
CTGAATTATAGTTTGAGCGC+CGG - Chr7:71773545-71773564 MsG0780039998.01.T01:intron 40.0%
CTGAGCTAATTAAGGTGAGA+GGG - Chr7:71770203-71770222 MsG0780039998.01.T01:intron 40.0%
GAAATCGTCCTCAAAGCAAT+GGG - Chr7:71770153-71770172 MsG0780039998.01.T01:intron 40.0%
GATCGGATGACTTGAGAATA+AGG - Chr7:71771434-71771453 MsG0780039998.01.T01:intron 40.0%
GCATTTACACAAACACAGAC+CGG + Chr7:71770822-71770841 None:intergenic 40.0%
GTGTAACGTGCAATAAGGAA+GGG - Chr7:71772174-71772193 MsG0780039998.01.T01:intron 40.0%
TAGGAAACATGTTAGCTACG+TGG - Chr7:71770674-71770693 MsG0780039998.01.T01:intron 40.0%
TATCATTACTAGTTACCGGC+GGG - Chr7:71772742-71772761 MsG0780039998.01.T01:CDS 40.0%
TATTCTCTAGTAGATGCGCT+CGG + Chr7:71773087-71773106 None:intergenic 40.0%
TCACTCGGCAATTAATACAC+TGG + Chr7:71769942-71769961 None:intergenic 40.0%
TCATGAAAGTTCATACCCAG+TGG + Chr7:71770563-71770582 None:intergenic 40.0%
TCGGAAACTAAGGATAGAAG+AGG - Chr7:71772217-71772236 MsG0780039998.01.T01:intron 40.0%
TTCTGACTTTGACAGAAGCA+AGG + Chr7:71769082-71769101 None:intergenic 40.0%
! ATGCTTAATCTGGAACTGGT+TGG - Chr7:71773346-71773365 MsG0780039998.01.T01:intron 40.0%
! CAAAGCTGCTCTCAATTTTG+GGG - Chr7:71768417-71768436 MsG0780039998.01.T01:three_prime_UTR 40.0%
! CGGATCTCATTTTCGTTGAT+AGG + Chr7:71769720-71769739 None:intergenic 40.0%
! CTTGATGCTTAATCTGGAAC+TGG - Chr7:71773342-71773361 MsG0780039998.01.T01:intron 40.0%
! GCAAAGCTGCTCTCAATTTT+GGG - Chr7:71768416-71768435 MsG0780039998.01.T01:three_prime_UTR 40.0%
! GGAAATCGAGAAGCATAGAT+AGG - Chr7:71769527-71769546 MsG0780039998.01.T01:intron 40.0%
! GTTTTCACAAACGCTGTGTT+TGG - Chr7:71768901-71768920 MsG0780039998.01.T01:intron 40.0%
! TACAATGGGGGTATGGAATA+TGG - Chr7:71773695-71773714 MsG0780039998.01.T01:intron 40.0%
! TCGGTTACTTTCGGAAACTA+AGG - Chr7:71772207-71772226 MsG0780039998.01.T01:intron 40.0%
! TGCAAAGCTGCTCTCAATTT+TGG - Chr7:71768415-71768434 MsG0780039998.01.T01:three_prime_UTR 40.0%
! TGGCTGAATTCGGTTACTTT+CGG - Chr7:71772198-71772217 MsG0780039998.01.T01:intron 40.0%
!! GGTGGAAGATTTTTGAAGGA+CGG + Chr7:71769057-71769076 None:intergenic 40.0%
!! TATGGTGATGGTTATGATGG+TGG - Chr7:71773713-71773732 MsG0780039998.01.T01:intron 40.0%
AACGTGCAATAAGGAAGGGA+TGG - Chr7:71772178-71772197 MsG0780039998.01.T01:intron 45.0%
AAGGAAGGGATGGCTGAATT+CGG - Chr7:71772188-71772207 MsG0780039998.01.T01:intron 45.0%
ACATGGGAACCACTTGAAGA+AGG - Chr7:71770370-71770389 MsG0780039998.01.T01:intron 45.0%
ACGCTTCAGATTGAAGCAGT+TGG - Chr7:71770704-71770723 MsG0780039998.01.T01:intron 45.0%
ACTCATATGTGGGAACCACT+GGG - Chr7:71769851-71769870 MsG0780039998.01.T01:intron 45.0%
AGCAGCTGCTTAGTTAGAAG+AGG - Chr7:71774270-71774289 MsG0780039998.01.T01:intron 45.0%
AGGAATGTACAATGGGGGTA+TGG - Chr7:71773688-71773707 MsG0780039998.01.T01:intron 45.0%
AGGATAGAAGAGGGAGAACA+AGG - Chr7:71772227-71772246 MsG0780039998.01.T01:intron 45.0%
AGTACGAAGGGGAGTCAAAA+AGG - Chr7:71772031-71772050 MsG0780039998.01.T01:intron 45.0%
ATCATTACTAGTTACCGGCG+GGG - Chr7:71772743-71772762 MsG0780039998.01.T01:CDS 45.0%
ATCTATATGTCACGGCCCAA+CGG + Chr7:71773578-71773597 None:intergenic 45.0%
CAGATATCAACCTCCTCTTC+CGG - Chr7:71771177-71771196 MsG0780039998.01.T01:intron 45.0%
CATGTTAGACCCTTGCTTCA+AGG - Chr7:71770849-71770868 MsG0780039998.01.T01:intron 45.0%
CCGGTTGGGTATTATGACAA+TGG - Chr7:71773815-71773834 MsG0780039998.01.T01:intron 45.0%
CGCCGGTAACTAGTAATGAT+AGG + Chr7:71772743-71772762 None:intergenic 45.0%
CGCTTTCTCTCTTTCTTCTC+TGG - Chr7:71769241-71769260 MsG0780039998.01.T01:intron 45.0%
CTAACTAAGCAGCTGCTACA+CGG + Chr7:71774267-71774286 None:intergenic 45.0%
GACTTTGACAGAAGCAAGGA+CGG + Chr7:71769078-71769097 None:intergenic 45.0%
GCATGCTTTCCAAAACACAC+AGG + Chr7:71773132-71773151 None:intergenic 45.0%
GGGTAGTGTAACGTGCAATA+AGG - Chr7:71772169-71772188 MsG0780039998.01.T01:intron 45.0%
GTCGAAGTCGAAATCGAAGT+TGG - Chr7:71769214-71769233 MsG0780039998.01.T01:intron 45.0%
GTTTCTCATCCTTCCTTGAG+TGG + Chr7:71769748-71769767 None:intergenic 45.0%
TACCACACTCCTTGAAGCAA+GGG + Chr7:71770861-71770880 None:intergenic 45.0%
TCAGATGGATGGGTATCAGA+GGG - Chr7:71769671-71769690 MsG0780039998.01.T01:intron 45.0%
TGAAAGTTCATACCCAGTGG+AGG + Chr7:71770560-71770579 None:intergenic 45.0%
TGGGGACTATAACAAGTCCT+AGG - Chr7:71772335-71772354 MsG0780039998.01.T01:intron 45.0%
TTACCACACTCCTTGAAGCA+AGG + Chr7:71770862-71770881 None:intergenic 45.0%
TTCAGATGGATGGGTATCAG+AGG - Chr7:71769670-71769689 MsG0780039998.01.T01:intron 45.0%
TTGATAGGGCTATCTGCCTT+GGG + Chr7:71769705-71769724 None:intergenic 45.0%
TTTACTTGATCAGCCGGAAG+AGG + Chr7:71771193-71771212 None:intergenic 45.0%
! AAGGAAGGACGGTGAGTTTT+GGG + Chr7:71769120-71769139 None:intergenic 45.0%
! GGACGGTGGAAGATTTTTGA+AGG + Chr7:71769061-71769080 None:intergenic 45.0%
! TCCTTCCTTGAGTGGTAATG+CGG + Chr7:71769740-71769759 None:intergenic 45.0%
!! AATGGATTGAGAGCTGAAGC+TGG + Chr7:71772282-71772301 None:intergenic 45.0%
!! GATTTTTGAAGGACGGTGGA+AGG + Chr7:71769050-71769069 None:intergenic 45.0%
!! GGAAGATTTTTGAAGGACGG+TGG + Chr7:71769054-71769073 None:intergenic 45.0%
!!! GTGAGTTTTGGGAGAAGGAA+AGG + Chr7:71769109-71769128 None:intergenic 45.0%
!!! TTAATTTAACTATAATATTT+TGG - Chr7:71770067-71770086 MsG0780039998.01.T01:intron 5.0%
AAAGGTGACCGAAGCAAGGA+AGG + Chr7:71769135-71769154 None:intergenic 50.0%
AAGGAAAGGTGACCGAAGCA+AGG + Chr7:71769139-71769158 None:intergenic 50.0%
AGAGAGACGATGTGAGTCAC+CGG + Chr7:71773030-71773049 None:intergenic 50.0%
AGCTGGATACATCCTCCACT+GGG - Chr7:71770545-71770564 MsG0780039998.01.T01:intron 50.0%
CACTCATATGTGGGAACCAC+TGG - Chr7:71769850-71769869 MsG0780039998.01.T01:intron 50.0%
CAGTGGTTCCCACATATGAG+TGG + Chr7:71769852-71769871 None:intergenic 50.0%
CCATGTGTTAGTGCTGTGTC+CGG - Chr7:71770800-71770819 MsG0780039998.01.T01:intron 50.0%
CTCTCGCATTCTTACCACGT+GGG + Chr7:71773862-71773881 None:intergenic 50.0%
GAGATCCGCATTACCACTCA+AGG - Chr7:71769732-71769751 MsG0780039998.01.T01:intron 50.0%
GAGTGAACTGTAGCAGCAGA+AGG - Chr7:71772069-71772088 MsG0780039998.01.T01:intron 50.0%
GGAAGAAGGCCTTCTTCAAG+TGG + Chr7:71770382-71770401 None:intergenic 50.0%
GGGAACCACTGGGTATGATT+AGG - Chr7:71769861-71769880 MsG0780039998.01.T01:intron 50.0%
GTCATAATACCCAACCGGCT+GGG + Chr7:71773813-71773832 None:intergenic 50.0%
GTTATTTATAGGCTCCCCGC+CGG + Chr7:71772760-71772779 None:intergenic 50.0%
TCCGCATTACCACTCAAGGA+AGG - Chr7:71769736-71769755 MsG0780039998.01.T01:intron 50.0%
TCGCTTGTCCCATTGCTTTG+AGG + Chr7:71770164-71770183 None:intergenic 50.0%
TCTCGCATTCTTACCACGTG+GGG + Chr7:71773861-71773880 None:intergenic 50.0%
TGTCATAATACCCAACCGGC+TGG + Chr7:71773814-71773833 None:intergenic 50.0%
TTACTTGTAGGCCAAGGTCG+TGG - Chr7:71774205-71774224 MsG0780039998.01.T01:intron 50.0%
TTAGGCTCCCCGCCTTTATT+TGG + Chr7:71772817-71772836 None:intergenic 50.0%
TTTGAAGGACGGTGGAAGGA+GGG + Chr7:71769046-71769065 None:intergenic 50.0%
TTTGACAGAAGCAAGGACGG+TGG + Chr7:71769075-71769094 None:intergenic 50.0%
! CAAGGAAGGACGGTGAGTTT+TGG + Chr7:71769121-71769140 None:intergenic 50.0%
! GGGGGTATGGAATATGGTGA+TGG - Chr7:71773701-71773720 MsG0780039998.01.T01:intron 50.0%
! GGTGAGGTTCCTGTGTGTTT+TGG - Chr7:71773120-71773139 MsG0780039998.01.T01:CDS 50.0%
! GTTGATAGGGCTATCTGCCT+TGG + Chr7:71769706-71769725 None:intergenic 50.0%
!! GATGGTTATGATGGTGGACG+TGG - Chr7:71773719-71773738 MsG0780039998.01.T01:intron 50.0%
!! TATGATGGTGGACGTGGCTA+TGG - Chr7:71773725-71773744 MsG0780039998.01.T01:intron 50.0%
!! TTTTGAAGGACGGTGGAAGG+AGG + Chr7:71769047-71769066 None:intergenic 50.0%
AAAGGCGGGGAGCCTAACTA+TGG - Chr7:71772820-71772839 MsG0780039998.01.T01:intron 55.0%
ACTTGATCAGCCGGAAGAGG+AGG + Chr7:71771190-71771209 None:intergenic 55.0%
ATATAGAGGCGGGGAGCCTA+CGG - Chr7:71772782-71772801 MsG0780039998.01.T01:intron 55.0%
CCGGACACAGCACTAACACA+TGG + Chr7:71770803-71770822 None:intergenic 55.0%
CTCACCGTCCTTCCTTGCTT+CGG - Chr7:71769124-71769143 MsG0780039998.01.T01:CDS 55.0%
GACCCTTGCTTCAAGGAGTG+TGG - Chr7:71770856-71770875 MsG0780039998.01.T01:intron 55.0%
GAGCTGGATACATCCTCCAC+TGG - Chr7:71770544-71770563 MsG0780039998.01.T01:intron 55.0%
GATACACAGAAGGCTCGCCA+AGG - Chr7:71771326-71771345 MsG0780039998.01.T01:intron 55.0%
GATGGATGGGTATCAGAGGG+TGG - Chr7:71769674-71769693 MsG0780039998.01.T01:intron 55.0%
GCTCTCGCATTCTTACCACG+TGG + Chr7:71773863-71773882 None:intergenic 55.0%
GTGACCGAAGCAAGGAAGGA+CGG + Chr7:71769131-71769150 None:intergenic 55.0%
GTGAGTGACCGAAGCAAGGA+AGG + Chr7:71769179-71769198 None:intergenic 55.0%
GTGAGTGAGTGACCGAAGCA+AGG + Chr7:71769183-71769202 None:intergenic 55.0%
TCAGAGGGTGGAGAAACCCA+AGG - Chr7:71769686-71769705 MsG0780039998.01.T01:intron 55.0%
TGTAGGCCAAGGTCGTGGAA+GGG - Chr7:71774210-71774229 MsG0780039998.01.T01:intron 55.0%
TTGTAGGCCAAGGTCGTGGA+AGG - Chr7:71774209-71774228 MsG0780039998.01.T01:intron 55.0%
!!! GGACGGTGAGTTTTGGGAGA+AGG + Chr7:71769114-71769133 None:intergenic 55.0%
ACTTGGCTATGGTGCCCAGC+CGG - Chr7:71773796-71773815 MsG0780039998.01.T01:intron 60.0%
AGGGGCAGAGGTAGAGGTAG+AGG - Chr7:71771376-71771395 MsG0780039998.01.T01:intron 60.0%
CAAGGTCGTGGAAGGGGAAG+AGG - Chr7:71774217-71774236 MsG0780039998.01.T01:intron 60.0%
CAGCATCACGACCACGTCCA+CGG + Chr7:71774243-71774262 None:intergenic 60.0%
CATAGCCAAGTCCTCGTCCC+CGG + Chr7:71773787-71773806 None:intergenic 60.0%
CGGGGAGCCTAACTATGGAG+GGG - Chr7:71772825-71772844 MsG0780039998.01.T01:intron 60.0%
CTCGCCAAGGATGCGAGGAA+GGG - Chr7:71771339-71771358 MsG0780039998.01.T01:intron 60.0%
CTCGGTTCTGCACGAGCTAG+TGG + Chr7:71773069-71773088 None:intergenic 60.0%
CTCTTCCCCTTCCACGACCT+TGG + Chr7:71774219-71774238 None:intergenic 60.0%
GACGGCTCCCCTCCATAGTT+AGG + Chr7:71772835-71772854 None:intergenic 60.0%
GACGTGGCTATGGTGGCAGA+GGG - Chr7:71773735-71773754 MsG0780039998.01.T01:intron 60.0%
GCATTCTTACCACGTGGGGC+AGG + Chr7:71773857-71773876 None:intergenic 60.0%
GCGGGGAGCCTAACTATGGA+GGG - Chr7:71772824-71772843 MsG0780039998.01.T01:intron 60.0%
GTAGGCCAAGGTCGTGGAAG+GGG - Chr7:71774211-71774230 MsG0780039998.01.T01:intron 60.0%
GTGCATGGGGTCGTGCTTTC+CGG - Chr7:71773765-71773784 MsG0780039998.01.T01:intron 60.0%
TCGCCAAGGATGCGAGGAAG+GGG - Chr7:71771340-71771359 MsG0780039998.01.T01:intron 60.0%
TGATAGGCTCCCCGCCAAAG+TGG + Chr7:71772727-71772746 None:intergenic 60.0%
TGCATGGGGTCGTGCTTTCC+GGG - Chr7:71773766-71773785 MsG0780039998.01.T01:intron 60.0%
TTACTGGCGGGGAGCCACTT+TGG - Chr7:71772710-71772729 MsG0780039998.01.T01:CDS 60.0%
TTCTTACCACGTGGGGCAGG+TGG + Chr7:71773854-71773873 None:intergenic 60.0%
! GGAAAGCACGACCCCATGCA+CGG + Chr7:71773766-71773785 None:intergenic 60.0%
!! GATGGTGGACGTGGCTATGG+TGG - Chr7:71773728-71773747 MsG0780039998.01.T01:intron 60.0%
ACGGCCCAACGGCACATGAC+CGG + Chr7:71773567-71773586 None:intergenic 65.0%
CGCCAAGGATGCGAGGAAGG+GGG - Chr7:71771341-71771360 MsG0780039998.01.T01:intron 65.0%
CGGGGACGAGGACTTGGCTA+TGG - Chr7:71773785-71773804 MsG0780039998.01.T01:intron 65.0%
CGTGGAAGGGGCAGAGGTAG+AGG - Chr7:71771370-71771389 MsG0780039998.01.T01:intron 65.0%
CGTGGACGTGGTCGTGATGC+TGG - Chr7:71774241-71774260 MsG0780039998.01.T01:intron 65.0%
GAAGGCTCGCCAAGGATGCG+AGG - Chr7:71771334-71771353 MsG0780039998.01.T01:intron 65.0%
GCATGGGGTCGTGCTTTCCG+GGG - Chr7:71773767-71773786 MsG0780039998.01.T01:intron 65.0%
GCTATGGTGCCCAGCCGGTT+GGG - Chr7:71773801-71773820 MsG0780039998.01.T01:intron 65.0%
GCTCGCCAAGGATGCGAGGA+AGG - Chr7:71771338-71771357 MsG0780039998.01.T01:intron 65.0%
GCTTTCCGGGGACGAGGACT+TGG - Chr7:71773779-71773798 MsG0780039998.01.T01:intron 65.0%
GGACGTGGCTATGGTGGCAG+AGG - Chr7:71773734-71773753 MsG0780039998.01.T01:intron 65.0%
GGCGGGGAGCCTAACTATGG+AGG - Chr7:71772823-71772842 MsG0780039998.01.T01:intron 65.0%
! AAGGGGGCGTGGTCGTGGAA+GGG - Chr7:71771357-71771376 MsG0780039998.01.T01:intron 65.0%
!! AGCGCCGGTCATGTGCCGTT+GGG - Chr7:71773560-71773579 MsG0780039998.01.T01:intron 65.0%
AGGATGCGAGGAAGGGGGCG+TGG - Chr7:71771346-71771365 MsG0780039998.01.T01:intron 70.0%
AGGGGAAGAGGCCGTGGACG+TGG - Chr7:71774229-71774248 MsG0780039998.01.T01:intron 70.0%
CGCCCCCTTCCTCGCATCCT+TGG + Chr7:71771346-71771365 None:intergenic 70.0%
CGTGGAAGGGGAAGAGGCCG+TGG - Chr7:71774223-71774242 MsG0780039998.01.T01:intron 70.0%
CGTGGTCGTGGAAGGGGCAG+AGG - Chr7:71771364-71771383 MsG0780039998.01.T01:intron 70.0%
GATGCACCACCTGCCCCACG+TGG - Chr7:71773845-71773864 MsG0780039998.01.T01:intron 70.0%
GGCTATGGTGCCCAGCCGGT+TGG - Chr7:71773800-71773819 MsG0780039998.01.T01:intron 70.0%
GGCTATGGTGGCAGAGGGCG+TGG - Chr7:71773740-71773759 MsG0780039998.01.T01:intron 70.0%
GGTCGTGCTTTCCGGGGACG+AGG - Chr7:71773773-71773792 MsG0780039998.01.T01:intron 70.0%
! AGAGGGCGTGGCCGTGCATG+GGG - Chr7:71773752-71773771 MsG0780039998.01.T01:intron 70.0%
! AGGGGGCGTGGTCGTGGAAG+GGG - Chr7:71771358-71771377 MsG0780039998.01.T01:intron 70.0%
! CAGAGGGCGTGGCCGTGCAT+GGG - Chr7:71773751-71773770 MsG0780039998.01.T01:intron 70.0%
! CTGGCGGGGAGCCACTTTGG+CGG - Chr7:71772713-71772732 MsG0780039998.01.T01:CDS 70.0%
! GAAGGGGGCGTGGTCGTGGA+AGG - Chr7:71771356-71771375 MsG0780039998.01.T01:intron 70.0%
! TGGCGGGGAGCCACTTTGGC+GGG - Chr7:71772714-71772733 MsG0780039998.01.T01:CDS 70.0%
!! GAGCGCCGGTCATGTGCCGT+TGG - Chr7:71773559-71773578 MsG0780039998.01.T01:intron 70.0%
! CGAGGAAGGGGGCGTGGTCG+TGG - Chr7:71771352-71771371 MsG0780039998.01.T01:intron 75.0%
! GCAGAGGGCGTGGCCGTGCA+TGG - Chr7:71773750-71773769 MsG0780039998.01.T01:intron 75.0%
! GGCGGGGAGCCACTTTGGCG+GGG - Chr7:71772715-71772734 MsG0780039998.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 71768367 71774537 71768367 ID=MsG0780039998.01;Name=MsG0780039998.01
Chr7 mRNA 71768367 71774537 71768367 ID=MsG0780039998.01.T01;Parent=MsG0780039998.01;Name=MsG0780039998.01.T01;_AED=0.40;_eAED=0.43;_QI=0|0.62|0.55|0.88|1|1|9|255|315
Chr7 exon 71768367 71768689 71768367 ID=MsG0780039998.01.T01:exon:14032;Parent=MsG0780039998.01.T01
Chr7 exon 71769038 71769214 71769038 ID=MsG0780039998.01.T01:exon:14031;Parent=MsG0780039998.01.T01
Chr7 exon 71771507 71771569 71771507 ID=MsG0780039998.01.T01:exon:14030;Parent=MsG0780039998.01.T01
Chr7 exon 71771663 71771724 71771663 ID=MsG0780039998.01.T01:exon:14029;Parent=MsG0780039998.01.T01
Chr7 exon 71772338 71772591 71772338 ID=MsG0780039998.01.T01:exon:14028;Parent=MsG0780039998.01.T01
Chr7 exon 71772688 71772766 71772688 ID=MsG0780039998.01.T01:exon:14027;Parent=MsG0780039998.01.T01
Chr7 exon 71772851 71772900 71772851 ID=MsG0780039998.01.T01:exon:14026;Parent=MsG0780039998.01.T01
Chr7 exon 71773107 71773229 71773107 ID=MsG0780039998.01.T01:exon:14025;Parent=MsG0780039998.01.T01
Chr7 exon 71774466 71774537 71774466 ID=MsG0780039998.01.T01:exon:14024;Parent=MsG0780039998.01.T01
Chr7 CDS 71774466 71774537 71774466 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71773107 71773229 71773107 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71772851 71772900 71772851 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71772688 71772766 71772688 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71772338 71772591 71772338 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71771663 71771724 71771663 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71771507 71771569 71771507 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71769038 71769214 71769038 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 CDS 71768622 71768689 71768622 ID=MsG0780039998.01.T01:cds;Parent=MsG0780039998.01.T01
Chr7 three_prime_UTR 71768367 71768621 71768367 ID=MsG0780039998.01.T01:three_prime_utr;Parent=MsG0780039998.01.T01
Gene Sequence

>MsG0780039998.01.T01

ATGGGCTTTACGAAAGTTAAGATTGCTTTGGAAACAACAAAATTGATGTGCAAAGCTGCTCTCAATTTTGGGATGGATGGGTATCAGAGGGTGGAGAAACCCAAGGCAGATAGCCCTATCAACGAAAATGAGATCCGCATTACCACTCAAGGAAGGATGAGAAACTATATCACTTATGCTACCACTCTTTTTCAGGTTATAGGATATTTCTCTTTTATTTTGTTTAGTGTGATTCATACATGCAAGAGAAAGGAACTGAAGAAATCGTCCTCAAAGCAATGGGACAAGCGATTAATAAGACTGACAATTACTGAGCTAATTAAGAGAAGGATTGTTGGTCTGCATCAGAACACTATTATTGGATCAACTGATATAACTGACACATGGGAACCACTTGAAGAAGGCCTTCTTCCGTATGTTTTCATTGTTTTCCCTGTGTTACTTTGTCAAATAGTTTATATATGCACAGCATGGGCGTTATTGTTTTCATTTTACTTGCGTAGTTTGGAAACTACTCGTCATGTTTCAATGATCACAATTACTTTGTCAAAGAAAGAGCTGGATACATCCTCCACTGGATATCAACCTCCTCTTCCGGCTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCGCCAAGGATGCGAGGAAGGGGGCGTGGTCGTGGAAGGGGCAGAGGTAGAGGTAGAGGAATGTACAATGGGGGTATGGAATATGGTGATGGTTATGATGGTGGACGTGGCTATGGTGGCAGAGGGCGTGGCCGTGCATGGGGTCGTGCTTTCCGGGGACGAGGACTTGGCTATGGTGCCCAGCCGGTTGGGTATTATGACAATGGTGAATATGATGCACCACCTGCCCCACGTGGCCAAGGTCGTGGAAGGGGAAGAGGCCGTGGACGTGGTCGTGATGCTGGCCGTGTAGCAGCTGCTTAG
Protein sequence

>MsG0780039998.01.T01

MGFTKVKIALETTKLMCKAALNFGMDGYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQVIGYFSFILFSVIHTCKRKELKKSSSKQWDKRLIRLTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPYVFIVFPVLLCQIVYICTAWALLFSFYLRSLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGRGMYNGGMEYGDGYDGGRGYGGRGRGRAWGRAFRGRGLGYGAQPVGYYDNGEYDAPPAPRGQGRGRGRGRGRGRDAGRVAAA*