AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010776.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010776.01.T01 MTR_2g090635 98.571 140 2 0 1 140 1 140 1.73e-100 284
MsG0280010776.01.T01 MTR_2g014360 67.361 144 39 2 2 140 12 152 1.76e-65 196
MsG0280010776.01.T01 MTR_8g064590 69.697 132 36 1 8 139 9 136 3.55e-62 187
MsG0280010776.01.T01 MTR_5g034290 66.176 136 42 2 3 138 4 135 1.09e-58 178
MsG0280010776.01.T01 MTR_5g034290 66.176 136 42 2 3 138 37 168 2.80e-58 178
MsG0280010776.01.T01 MTR_6g060020 68.675 83 26 0 57 139 17 99 8.05e-38 124
MsG0280010776.01.T01 MTR_2g090640 61.728 81 27 1 57 133 456 536 5.07e-23 94.0
MsG0280010776.01.T01 MTR_5g083900 41.085 129 63 3 10 137 111 227 4.81e-22 87.8
MsG0280010776.01.T01 MTR_5g083870 43.609 133 58 6 10 137 5 125 1.28e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010776.01.T01 AT2G33845 72.464 138 35 1 3 140 48 182 1.18e-69 207
MsG0280010776.01.T01 AT4G28440 69.630 135 39 1 5 137 15 149 1.96e-63 191
MsG0280010776.01.T01 AT1G23750 60.870 138 50 1 2 139 4 137 6.13e-60 181
MsG0280010776.01.T01 AT1G03810 68.217 129 40 1 7 135 14 141 1.65e-59 181
MsG0280010776.01.T01 AT1G10590 65.926 135 41 3 5 137 6 137 9.02e-58 176
MsG0280010776.01.T01 AT1G10590 65.926 135 41 3 5 137 6 137 9.02e-58 176
MsG0280010776.01.T01 AT1G10590 65.926 135 41 3 5 137 20 151 1.87e-57 176
MsG0280010776.01.T01 AT1G23750 69.474 95 29 0 45 139 6 100 5.67e-47 147

Find 43 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGACTTCAAAATTTGC+AGG 0.302899 2:-74936692 None:intergenic
AACACGAAGCTTTGAATCTA+TGG 0.308708 2:+74934493 MsG0280010776.01.T01:exon
AGAGTGTGTCCATTGGTTCC+AGG 0.350948 2:-74934569 None:intergenic
CTCATTAGTTGAATATGAAT+TGG 0.360041 2:+74936727 MsG0280010776.01.T01:CDS
CTGCTGTGCAGGTTCATATA+TGG 0.396491 2:+74936839 MsG0280010776.01.T01:three_prime_UTR
CGCAGAATTAAAGTTGCACC+AGG 0.436054 2:-74936593 None:intergenic
CTATGAGGTTGGCAGTTGAT+AGG 0.440060 2:+74936645 MsG0280010776.01.T01:CDS
TCCTAACCGCGGTGGTCGAT+CGG 0.440345 2:+74934631 MsG0280010776.01.T01:CDS
CACTGTCAGAGTGTGTCCAT+TGG 0.463476 2:-74934576 None:intergenic
CGCATTGCTGAATGTCTCAT+TGG 0.467345 2:+74934677 MsG0280010776.01.T01:CDS
TGAGGTTGGCAGTTGATAGG+TGG 0.471269 2:+74936648 MsG0280010776.01.T01:CDS
TAATTCTTCGCCGGTGAAGA+CGG 0.477098 2:+74934607 MsG0280010776.01.T01:CDS
TGAACAATTGACTGCTGTGC+AGG 0.501881 2:+74936828 MsG0280010776.01.T01:three_prime_UTR
TGCTAAGATTGACATGTTCA+AGG 0.505137 2:+74936619 MsG0280010776.01.T01:CDS
GAGGTTGGCAGTTGATAGGT+GGG 0.510112 2:+74936649 MsG0280010776.01.T01:CDS
AAGGTCGATCAGCTGAAACC+TGG 0.513519 2:+74934551 MsG0280010776.01.T01:CDS
GCCGATCGACCACCGCGGTT+AGG 0.518836 2:-74934632 None:intergenic
CACAGCAGTCAATTGTTCAA+TGG 0.525303 2:-74936824 None:intergenic
CAGCTGAAACCTGGAACCAA+TGG 0.532250 2:+74934560 MsG0280010776.01.T01:CDS
AATGAGACATTCAGCAATGC+GGG 0.536511 2:-74934675 None:intergenic
TGATCGACCTTCACGAACAC+TGG 0.539292 2:-74934539 None:intergenic
CGGTTAGGAACCGTCTTCAC+CGG 0.552526 2:-74934617 None:intergenic
GAAGGTGGTTAATTCTTCGC+CGG 0.566549 2:+74934598 MsG0280010776.01.T01:CDS
ACATGTTCAAGGGATCTATG+AGG 0.578715 2:+74936630 MsG0280010776.01.T01:CDS
GCTAAGATTGACATGTTCAA+GGG 0.579635 2:+74936620 MsG0280010776.01.T01:CDS
GTTCAAGGGATCTATGAGGT+TGG 0.593452 2:+74936634 MsG0280010776.01.T01:CDS
ATTTAGTCTTCAGATTGCTG+TGG 0.594758 2:+74936875 MsG0280010776.01.T01:three_prime_UTR
GGTTGGCAGTTGATAGGTGG+GGG 0.611083 2:+74936651 MsG0280010776.01.T01:CDS
AAGTTGCACCAGGGTTCATG+AGG 0.612434 2:-74936583 None:intergenic
TTCACTGCTCGCAATGAACA+AGG 0.613603 2:+74934722 MsG0280010776.01.T01:CDS
TAACCGCGGTGGTCGATCGG+CGG 0.613647 2:+74934634 MsG0280010776.01.T01:CDS
AGGTTGGCAGTTGATAGGTG+GGG 0.635745 2:+74936650 MsG0280010776.01.T01:CDS
GCGAAAACCAGTGTTCGTGA+AGG 0.642463 2:+74934532 MsG0280010776.01.T01:CDS
AGACATTCAGCAATGCGGGA+AGG 0.647720 2:-74934671 None:intergenic
ACACACTCTGACAGTGAAGG+TGG 0.655149 2:+74934583 MsG0280010776.01.T01:CDS
TGGACACACTCTGACAGTGA+AGG 0.666395 2:+74934580 MsG0280010776.01.T01:CDS
CAATGAGACATTCAGCAATG+CGG 0.676023 2:-74934676 None:intergenic
GATCAATTGAAAATTGAACA+AGG 0.679889 2:-74934460 None:intergenic
GCAGTGGACCTCATGAACCC+TGG 0.684427 2:+74936575 MsG0280010776.01.T01:intron
AAGACGGTTCCTAACCGCGG+TGG 0.697992 2:+74934623 MsG0280010776.01.T01:CDS
GTGAAGACGGTTCCTAACCG+CGG 0.698190 2:+74934620 MsG0280010776.01.T01:CDS
GCAGAATTAAAGTTGCACCA+GGG 0.713466 2:-74936592 None:intergenic
TCACCGCCGATCGACCACCG+CGG 0.798992 2:-74934637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTGGTTTTTTATTTAAT+AGG - Chr2:74935336-74935355 None:intergenic 15.0%
!!! AGTTTAATTCTATTGTTTTA+TGG + Chr2:74935646-74935665 MsG0280010776.01.T01:intron 15.0%
!!! ATGTGGTTTTTTATTTAATA+GGG - Chr2:74935335-74935354 None:intergenic 15.0%
!!! ATGTGGTTTTTTTTTTTAAT+AGG + Chr2:74935583-74935602 MsG0280010776.01.T01:intron 15.0%
!!! TAAAAATCGTTGATTTTATA+TGG + Chr2:74934900-74934919 MsG0280010776.01.T01:intron 15.0%
!!! TGTGGTTTTTTTTTTTAATA+GGG + Chr2:74935584-74935603 MsG0280010776.01.T01:intron 15.0%
!! ATTACATAAAAAGCTTATTC+GGG - Chr2:74935712-74935731 None:intergenic 20.0%
!! CATTACATAAAAAGCTTATT+CGG - Chr2:74935713-74935732 None:intergenic 20.0%
!!! GAATAAGCTTTTTATGTAAT+GGG + Chr2:74935712-74935731 MsG0280010776.01.T01:intron 20.0%
!!! GTGGTTTTTTTTTTTAATAG+GGG + Chr2:74935585-74935604 MsG0280010776.01.T01:intron 20.0%
!!! TGGTTTTTTTTTTTAATAGG+GGG + Chr2:74935586-74935605 MsG0280010776.01.T01:intron 20.0%
!!! TGTGGTTTTTTATTTAATAG+GGG - Chr2:74935334-74935353 None:intergenic 20.0%
!!! TTTATGCGTATTTTTTATTG+TGG + Chr2:74934924-74934943 MsG0280010776.01.T01:intron 20.0%
! AAAAACATAACACATGAGAA+TGG - Chr2:74936242-74936261 None:intergenic 25.0%
! AAAATTGAAAGTTGCAAAAG+GGG - Chr2:74935378-74935397 None:intergenic 25.0%
! AACAAATACTGTAACACAAT+AGG - Chr2:74935874-74935893 None:intergenic 25.0%
! AAGTAATTGTGAGACTATTT+GGG + Chr2:74935121-74935140 MsG0280010776.01.T01:intron 25.0%
! AATAAGTTGTTTATCCATAC+AGG + Chr2:74935223-74935242 MsG0280010776.01.T01:intron 25.0%
! ATAAGTTGTTTATCCATACA+GGG + Chr2:74935224-74935243 MsG0280010776.01.T01:intron 25.0%
! ATTGATTATACGAAAACAGT+TGG + Chr2:74935055-74935074 MsG0280010776.01.T01:intron 25.0%
! CAAAATTGAAAGTTGCAAAA+GGG - Chr2:74935379-74935398 None:intergenic 25.0%
! CTCATTAGTTGAATATGAAT+TGG + Chr2:74936727-74936746 MsG0280010776.01.T01:CDS 25.0%
! GATCAATTGAAAATTGAACA+AGG - Chr2:74934463-74934482 None:intergenic 25.0%
! GATTTATAGGGAAAAGAATA+TGG + Chr2:74935463-74935482 MsG0280010776.01.T01:intron 25.0%
! TAAGTAATTGTGAGACTATT+TGG + Chr2:74935120-74935139 MsG0280010776.01.T01:intron 25.0%
! TCAAAACAGTAAAAACAACT+GGG + Chr2:74935418-74935437 MsG0280010776.01.T01:intron 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG - Chr2:74935380-74935399 None:intergenic 25.0%
! TTCAAAACAGTAAAAACAAC+TGG + Chr2:74935417-74935436 MsG0280010776.01.T01:intron 25.0%
! TTCAATGGTCAAACTAAAAA+TGG - Chr2:74936812-74936831 None:intergenic 25.0%
!! ATTTTGCCTTTTCAAACTTT+GGG + Chr2:74936308-74936327 MsG0280010776.01.T01:intron 25.0%
!! CGAATAAGCTTTTTATGTAA+TGG + Chr2:74935711-74935730 MsG0280010776.01.T01:intron 25.0%
!! TATTTTGCCTTTTCAAACTT+TGG + Chr2:74936307-74936326 MsG0280010776.01.T01:intron 25.0%
!!! ATTCATTTACTTTTATGCAG+TGG + Chr2:74936559-74936578 MsG0280010776.01.T01:intron 25.0%
!!! GTGGTTTTTTATTTAATAGG+GGG - Chr2:74935333-74935352 None:intergenic 25.0%
!!! GTTGTTTTTACTGTTTTGAA+TGG - Chr2:74935417-74935436 None:intergenic 25.0%
AAAATTCAAAGTTGCGAAAG+GGG + Chr2:74935541-74935560 MsG0280010776.01.T01:intron 30.0%
AAATTGAAAGTTGCAAAAGG+GGG - Chr2:74935377-74935396 None:intergenic 30.0%
AAGACTCGAATGCATTAATA+TGG - Chr2:74935250-74935269 None:intergenic 30.0%
AATAGAATTAAACTCACTCG+TGG - Chr2:74935640-74935659 None:intergenic 30.0%
AATAGGTTTAACTGTTCAAC+AGG - Chr2:74935857-74935876 None:intergenic 30.0%
ACAGTATTTGTTTGACATGT+GGG + Chr2:74935882-74935901 MsG0280010776.01.T01:intron 30.0%
ATTATACGAAAACAGTTGGA+GGG + Chr2:74935059-74935078 MsG0280010776.01.T01:intron 30.0%
CAAAACAGTAAAAACAACTG+GGG + Chr2:74935419-74935438 MsG0280010776.01.T01:intron 30.0%
CAAAATTCAAAGTTGCGAAA+GGG + Chr2:74935540-74935559 MsG0280010776.01.T01:intron 30.0%
GAAAGAGTTCTTAACTCTTA+AGG + Chr2:74934790-74934809 MsG0280010776.01.T01:intron 30.0%
GAATACACTTTCAATCGAAA+CGG - Chr2:74936372-74936391 None:intergenic 30.0%
GAATTGGGTTAAAGTGATAT+TGG + Chr2:74935285-74935304 MsG0280010776.01.T01:intron 30.0%
GAGCAAGTTTCAGATTTATA+GGG + Chr2:74935451-74935470 MsG0280010776.01.T01:intron 30.0%
GTGATGTTACTGTGATTTAT+AGG + Chr2:74936037-74936056 MsG0280010776.01.T01:intron 30.0%
TAAGAGTTAAGAACTCTTTC+AGG - Chr2:74934790-74934809 None:intergenic 30.0%
TACAGTATTTGTTTGACATG+TGG + Chr2:74935881-74935900 MsG0280010776.01.T01:intron 30.0%
TAGTGATGTTGCATAAATCA+GGG + Chr2:74936124-74936143 MsG0280010776.01.T01:intron 30.0%
TCAAAATTCAAAGTTGCGAA+AGG + Chr2:74935539-74935558 MsG0280010776.01.T01:intron 30.0%
TGAGCAAGTTTCAGATTTAT+AGG + Chr2:74935450-74935469 MsG0280010776.01.T01:intron 30.0%
TGATTTATAGGAATCAGTGT+GGG + Chr2:74936049-74936068 MsG0280010776.01.T01:intron 30.0%
TGTGATAAGTTCATCATGAT+AGG + Chr2:74935017-74935036 MsG0280010776.01.T01:intron 30.0%
TTTGGAAGATGATATCAGTT+TGG + Chr2:74936510-74936529 MsG0280010776.01.T01:intron 30.0%
! AAGCGAATCTTTTGAATTTG+GGG + Chr2:74936782-74936801 MsG0280010776.01.T01:three_prime_UTR 30.0%
! GAAGCGAATCTTTTGAATTT+GGG + Chr2:74936781-74936800 MsG0280010776.01.T01:three_prime_UTR 30.0%
! TGAAGCGAATCTTTTGAATT+TGG + Chr2:74936780-74936799 MsG0280010776.01.T01:three_prime_UTR 30.0%
! TGTTCCATTTCTAAGCATTT+TGG + Chr2:74934763-74934782 MsG0280010776.01.T01:intron 30.0%
!! AAACTTTGGGTTGGATTTAT+TGG + Chr2:74936321-74936340 MsG0280010776.01.T01:intron 30.0%
!! CTTTTGTTTCTTGCTTGTTT+TGG + Chr2:74936492-74936511 MsG0280010776.01.T01:intron 30.0%
AAAAGAATATGGCTTAGGAC+TGG + Chr2:74935474-74935493 MsG0280010776.01.T01:intron 35.0%
AAAGAAGTGGTGAAAGGTTA+TGG + Chr2:74935915-74935934 MsG0280010776.01.T01:intron 35.0%
AAATTCAAAGTTGCGAAAGG+GGG + Chr2:74935542-74935561 MsG0280010776.01.T01:intron 35.0%
AATGAATTTGGGCAACACTA+TGG - Chr2:74935816-74935835 None:intergenic 35.0%
AATTGAAAGTTGCAAAAGGG+GGG - Chr2:74935376-74935395 None:intergenic 35.0%
AGGTCCAAAATGCTTAGAAA+TGG - Chr2:74934770-74934789 None:intergenic 35.0%
AGTGATGTTGCATAAATCAG+GGG + Chr2:74936125-74936144 MsG0280010776.01.T01:intron 35.0%
ATAGTGTTGCCCAAATTCAT+TGG + Chr2:74935815-74935834 MsG0280010776.01.T01:intron 35.0%
ATCATTACAACACTCTAGCT+CGG - Chr2:74935789-74935808 None:intergenic 35.0%
ATCCAACCCAAAGTTTGAAA+AGG - Chr2:74936317-74936336 None:intergenic 35.0%
ATGTGCTTGGTTATGATTAG+AGG + Chr2:74935966-74935985 MsG0280010776.01.T01:intron 35.0%
CAGTATTTGTTTGACATGTG+GGG + Chr2:74935883-74935902 MsG0280010776.01.T01:intron 35.0%
CCATACCATCCAATGAATTT+GGG - Chr2:74935827-74935846 None:intergenic 35.0%
GAAAAGGCAAAATATACACG+CGG - Chr2:74936301-74936320 None:intergenic 35.0%
GAACCTGTGAAAATTGCTTA+TGG + Chr2:74934967-74934986 MsG0280010776.01.T01:intron 35.0%
GATTATACGAAAACAGTTGG+AGG + Chr2:74935058-74935077 MsG0280010776.01.T01:intron 35.0%
GATTTATAGGAATCAGTGTG+GGG + Chr2:74936050-74936069 MsG0280010776.01.T01:intron 35.0%
GCATTTAGACAAAGCACAAA+AGG - Chr2:74936473-74936492 None:intergenic 35.0%
GCTAAGATTGACATGTTCAA+GGG + Chr2:74936620-74936639 MsG0280010776.01.T01:CDS 35.0%
GGTATCAGTGAATTCCTATA+TGG + Chr2:74936346-74936365 MsG0280010776.01.T01:intron 35.0%
GTAGTGATGTTGCATAAATC+AGG + Chr2:74936123-74936142 MsG0280010776.01.T01:intron 35.0%
GTGATTTATAGGAATCAGTG+TGG + Chr2:74936048-74936067 MsG0280010776.01.T01:intron 35.0%
GTGTAAAAAGAAGTGGTGAA+AGG + Chr2:74935909-74935928 MsG0280010776.01.T01:intron 35.0%
TAGGGAAAAGAATATGGCTT+AGG + Chr2:74935469-74935488 MsG0280010776.01.T01:intron 35.0%
TATTGTAGAGTAAGTTGCAC+TGG + Chr2:74936409-74936428 MsG0280010776.01.T01:intron 35.0%
TCCATACCATCCAATGAATT+TGG - Chr2:74935828-74935847 None:intergenic 35.0%
TGATCTTCTACTGTCTTGAA+TGG + Chr2:74935502-74935521 MsG0280010776.01.T01:intron 35.0%
TGCTAAGATTGACATGTTCA+AGG + Chr2:74936619-74936638 MsG0280010776.01.T01:CDS 35.0%
TTATGGTTTCTGCCAATGTT+GGG + Chr2:74935663-74935682 MsG0280010776.01.T01:intron 35.0%
TTTACAAGATGTGGGGAATT+GGG + Chr2:74935270-74935289 MsG0280010776.01.T01:intron 35.0%
TTTATGGTTTCTGCCAATGT+TGG + Chr2:74935662-74935681 MsG0280010776.01.T01:intron 35.0%
! AGCGAATCTTTTGAATTTGG+GGG + Chr2:74936783-74936802 MsG0280010776.01.T01:three_prime_UTR 35.0%
! ATGCCATAAGCAATTTTCAC+AGG - Chr2:74934973-74934992 None:intergenic 35.0%
! ATTTAGTCTTCAGATTGCTG+TGG + Chr2:74936875-74936894 MsG0280010776.01.T01:three_prime_UTR 35.0%
! CGAGTCTTTTTACAAGATGT+GGG + Chr2:74935262-74935281 MsG0280010776.01.T01:intron 35.0%
! CTCATTGATTGTGTTAGTGT+GGG + Chr2:74934859-74934878 MsG0280010776.01.T01:intron 35.0%
! GAGTCTTTTTACAAGATGTG+GGG + Chr2:74935263-74935282 MsG0280010776.01.T01:intron 35.0%
! GGGTTAAAGTGATATTGGTT+CGG + Chr2:74935290-74935309 MsG0280010776.01.T01:intron 35.0%
! GGTTGCTATTGCAAAAGAAT+GGG + Chr2:74936071-74936090 MsG0280010776.01.T01:intron 35.0%
! TATGGATGATCTTTGTTGTC+TGG + Chr2:74935933-74935952 MsG0280010776.01.T01:intron 35.0%
! TCATTGATTGTGTTAGTGTG+GGG + Chr2:74934860-74934879 MsG0280010776.01.T01:intron 35.0%
! TCGAGTCTTTTTACAAGATG+TGG + Chr2:74935261-74935280 MsG0280010776.01.T01:intron 35.0%
! TTTTACAAGATGTGGGGAAT+TGG + Chr2:74935269-74935288 MsG0280010776.01.T01:intron 35.0%
!! AACACGAAGCTTTGAATCTA+TGG + Chr2:74934493-74934512 MsG0280010776.01.T01:exon 35.0%
!! TCTCGTGATGTGTTTTTGTT+TGG + Chr2:74936200-74936219 MsG0280010776.01.T01:intron 35.0%
!! TTTGGGTTGGATTTATTGGA+TGG + Chr2:74936325-74936344 MsG0280010776.01.T01:intron 35.0%
!!! AACCTGCAAATTTTGAAGTC+AGG + Chr2:74936690-74936709 MsG0280010776.01.T01:CDS 35.0%
!!! ACCTGCAAATTTTGAAGTCA+GGG + Chr2:74936691-74936710 MsG0280010776.01.T01:CDS 35.0%
AAACACATCACGAGATTGAC+AGG - Chr2:74936195-74936214 None:intergenic 40.0%
AATGAGACATTCAGCAATGC+GGG - Chr2:74934678-74934697 None:intergenic 40.0%
AATTCAAAGTTGCGAAAGGG+GGG + Chr2:74935543-74935562 MsG0280010776.01.T01:intron 40.0%
ACATGTTCAAGGGATCTATG+AGG + Chr2:74936630-74936649 MsG0280010776.01.T01:CDS 40.0%
ACTCTACAATAGCTTCAGAG+TGG - Chr2:74936400-74936419 None:intergenic 40.0%
ATATCCGTCGTTCTATTCCT+TGG + Chr2:74936442-74936461 MsG0280010776.01.T01:intron 40.0%
ATCACATGCAAGGAACTCAA+AGG - Chr2:74936022-74936041 None:intergenic 40.0%
CAATGAGACATTCAGCAATG+CGG - Chr2:74934679-74934698 None:intergenic 40.0%
CACAGCAGTCAATTGTTCAA+TGG - Chr2:74936827-74936846 None:intergenic 40.0%
CCCAAATTCATTGGATGGTA+TGG + Chr2:74935824-74935843 MsG0280010776.01.T01:intron 40.0%
CGCAACAGGACAGAAAAAAA+CGG - Chr2:74936166-74936185 None:intergenic 40.0%
GCAGAATTAAAGTTGCACCA+GGG - Chr2:74936595-74936614 None:intergenic 40.0%
TATGGTTTCTGCCAATGTTG+GGG + Chr2:74935664-74935683 MsG0280010776.01.T01:intron 40.0%
TCACAGTAACATCACATGCA+AGG - Chr2:74936032-74936051 None:intergenic 40.0%
TCCCTGACTTCAAAATTTGC+AGG - Chr2:74936695-74936714 None:intergenic 40.0%
TGCATTAATATGGCCCTGTA+TGG - Chr2:74935240-74935259 None:intergenic 40.0%
TGCTATTGCAAAAGAATGGG+TGG + Chr2:74936074-74936093 MsG0280010776.01.T01:intron 40.0%
TGCTTGGTTATGATTAGAGG+AGG + Chr2:74935969-74935988 MsG0280010776.01.T01:intron 40.0%
TGTGGCATTGTGAGATTGTT+TGG + Chr2:74934942-74934961 MsG0280010776.01.T01:intron 40.0%
TGTTGCCCAAATTCATTGGA+TGG + Chr2:74935819-74935838 MsG0280010776.01.T01:intron 40.0%
TTCAATCGAAACGGCCATAT+AGG - Chr2:74936363-74936382 None:intergenic 40.0%
! AAACAGTTGGAGGGTTTGTT+TGG + Chr2:74935068-74935087 MsG0280010776.01.T01:intron 40.0%
! AACAGTTGGAGGGTTTGTTT+GGG + Chr2:74935069-74935088 MsG0280010776.01.T01:intron 40.0%
! GCGAATCTTTTGAATTTGGG+GGG + Chr2:74936784-74936803 MsG0280010776.01.T01:three_prime_UTR 40.0%
! GCTCATTGATTGTGTTAGTG+TGG + Chr2:74934858-74934877 MsG0280010776.01.T01:intron 40.0%
! GGGGAAAGTGTAAAAAGAAG+TGG + Chr2:74935902-74935921 MsG0280010776.01.T01:intron 40.0%
! GGGTTGCTATTGCAAAAGAA+TGG + Chr2:74936070-74936089 MsG0280010776.01.T01:intron 40.0%
! GTTCGGCTTAAACACACTTT+TGG + Chr2:74935307-74935326 MsG0280010776.01.T01:intron 40.0%
! TGCCTTTTCAAACTTTGGGT+TGG + Chr2:74936312-74936331 MsG0280010776.01.T01:intron 40.0%
!!! CGTTTTTTTCTGTCCTGTTG+CGG + Chr2:74936164-74936183 MsG0280010776.01.T01:intron 40.0%
AAACTTAGAGGGCTGGAATG+TGG + Chr2:74935566-74935585 MsG0280010776.01.T01:intron 45.0%
AAGCACAAAAGGATGTGCCA+AGG - Chr2:74936462-74936481 None:intergenic 45.0%
ATCGCAACTTGTGCGAAGTT+AGG + Chr2:74935613-74935632 MsG0280010776.01.T01:intron 45.0%
CGCAGAATTAAAGTTGCACC+AGG - Chr2:74936596-74936615 None:intergenic 45.0%
CGCATTGCTGAATGTCTCAT+TGG + Chr2:74934677-74934696 MsG0280010776.01.T01:CDS 45.0%
CTATGAGGTTGGCAGTTGAT+AGG + Chr2:74936645-74936664 MsG0280010776.01.T01:CDS 45.0%
CTGCTGTGCAGGTTCATATA+TGG + Chr2:74936839-74936858 MsG0280010776.01.T01:three_prime_UTR 45.0%
GAAGGTGGTTAATTCTTCGC+CGG + Chr2:74934598-74934617 MsG0280010776.01.T01:CDS 45.0%
GTTCAAGGGATCTATGAGGT+TGG + Chr2:74936634-74936653 MsG0280010776.01.T01:CDS 45.0%
TAATTCTTCGCCGGTGAAGA+CGG + Chr2:74934607-74934626 MsG0280010776.01.T01:CDS 45.0%
TGAACAATTGACTGCTGTGC+AGG + Chr2:74936828-74936847 MsG0280010776.01.T01:three_prime_UTR 45.0%
TGCAAAAGGGGGGAAACTTA+GGG - Chr2:74935366-74935385 None:intergenic 45.0%
TGTGCCAAGGAATAGAACGA+CGG - Chr2:74936449-74936468 None:intergenic 45.0%
TTCACTGCTCGCAATGAACA+AGG + Chr2:74934722-74934741 MsG0280010776.01.T01:CDS 45.0%
TTGCAAAAGAATGGGTGGTG+TGG + Chr2:74936079-74936098 MsG0280010776.01.T01:intron 45.0%
TTGCAAAAGGGGGGAAACTT+AGG - Chr2:74935367-74935386 None:intergenic 45.0%
! ACTCTAGCTCGGATGCATAT+GGG - Chr2:74935778-74935797 None:intergenic 45.0%
! TGGGTGGTGTGGCTATATTT+TGG + Chr2:74936090-74936109 MsG0280010776.01.T01:intron 45.0%
! TGGTTTGTGCATGATGTGCT+TGG + Chr2:74935953-74935972 MsG0280010776.01.T01:intron 45.0%
!! TATTCGGGAAAGCGTCAGTT+AGG - Chr2:74935697-74935716 None:intergenic 45.0%
!!! TTTTTTCTGTCCTGTTGCGG+TGG + Chr2:74936167-74936186 MsG0280010776.01.T01:intron 45.0%
AAAAGGGGGGAAACTTAGGG+GGG - Chr2:74935363-74935382 None:intergenic 50.0%
AAGGTCGATCAGCTGAAACC+TGG + Chr2:74934551-74934570 MsG0280010776.01.T01:CDS 50.0%
AAGTTGCACCAGGGTTCATG+AGG - Chr2:74936586-74936605 None:intergenic 50.0%
ACACACTCTGACAGTGAAGG+TGG + Chr2:74934583-74934602 MsG0280010776.01.T01:CDS 50.0%
AGACATTCAGCAATGCGGGA+AGG - Chr2:74934674-74934693 None:intergenic 50.0%
CAAAAGGGGGGAAACTTAGG+GGG - Chr2:74935364-74935383 None:intergenic 50.0%
CACTGTCAGAGTGTGTCCAT+TGG - Chr2:74934579-74934598 None:intergenic 50.0%
CAGCTGAAACCTGGAACCAA+TGG + Chr2:74934560-74934579 MsG0280010776.01.T01:CDS 50.0%
CGAAAGGGGGGAAACTTAGA+GGG + Chr2:74935555-74935574 MsG0280010776.01.T01:intron 50.0%
GCAAAAGGGGGGAAACTTAG+GGG - Chr2:74935365-74935384 None:intergenic 50.0%
GCGAAAACCAGTGTTCGTGA+AGG + Chr2:74934532-74934551 MsG0280010776.01.T01:CDS 50.0%
GTTGCATAAATCAGGGGCAG+CGG + Chr2:74936131-74936150 MsG0280010776.01.T01:intron 50.0%
TAGGACACTAGCCCCAACAT+TGG - Chr2:74935678-74935697 None:intergenic 50.0%
TGATCGACCTTCACGAACAC+TGG - Chr2:74934542-74934561 None:intergenic 50.0%
TGGACACACTCTGACAGTGA+AGG + Chr2:74934580-74934599 MsG0280010776.01.T01:CDS 50.0%
TTGCATAAATCAGGGGCAGC+GGG + Chr2:74936132-74936151 MsG0280010776.01.T01:intron 50.0%
! CACTCTAGCTCGGATGCATA+TGG - Chr2:74935779-74935798 None:intergenic 50.0%
! GTTGGAGGGTTTGTTTGGGT+TGG + Chr2:74935073-74935092 MsG0280010776.01.T01:intron 50.0%
!! AGAGTGTGTCCATTGGTTCC+AGG - Chr2:74934572-74934591 None:intergenic 50.0%
!! AGGTTGGCAGTTGATAGGTG+GGG + Chr2:74936650-74936669 MsG0280010776.01.T01:CDS 50.0%
!! GAGGTTGGCAGTTGATAGGT+GGG + Chr2:74936649-74936668 MsG0280010776.01.T01:CDS 50.0%
!! TGAGGTTGGCAGTTGATAGG+TGG + Chr2:74936648-74936667 MsG0280010776.01.T01:CDS 50.0%
AACTTAGGGGGGCTGGAATG+TGG - Chr2:74935352-74935371 None:intergenic 55.0%
CGGTTAGGAACCGTCTTCAC+CGG - Chr2:74934620-74934639 None:intergenic 55.0%
GCGAAAGGGGGGAAACTTAG+AGG + Chr2:74935554-74935573 MsG0280010776.01.T01:intron 55.0%
GTGAAGACGGTTCCTAACCG+CGG + Chr2:74934620-74934639 MsG0280010776.01.T01:CDS 55.0%
TTGACAGGTACCACCGCAAC+AGG - Chr2:74936180-74936199 None:intergenic 55.0%
! TGATAGGTGGGGGCGTATAG+AGG + Chr2:74936661-74936680 MsG0280010776.01.T01:CDS 55.0%
!! GGTTGGCAGTTGATAGGTGG+GGG + Chr2:74936651-74936670 MsG0280010776.01.T01:CDS 55.0%
AAGACGGTTCCTAACCGCGG+TGG + Chr2:74934623-74934642 MsG0280010776.01.T01:CDS 60.0%
AGGGGGGAAACTTAGAGGGC+TGG + Chr2:74935559-74935578 MsG0280010776.01.T01:intron 60.0%
GCAGTGGACCTCATGAACCC+TGG + Chr2:74936575-74936594 MsG0280010776.01.T01:intron 60.0%
TCCTAACCGCGGTGGTCGAT+CGG + Chr2:74934631-74934650 MsG0280010776.01.T01:CDS 60.0%
TAACCGCGGTGGTCGATCGG+CGG + Chr2:74934634-74934653 MsG0280010776.01.T01:CDS 65.0%
GCCGATCGACCACCGCGGTT+AGG - Chr2:74934635-74934654 None:intergenic 70.0%
GGGGGGAAACTTAGGGGGGC+TGG - Chr2:74935359-74935378 None:intergenic 70.0%
TCACCGCCGATCGACCACCG+CGG - Chr2:74934640-74934659 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 74934446 74936929 74934446 ID=MsG0280010776.01;Name=MsG0280010776.01
Chr2 mRNA 74934446 74936929 74934446 ID=MsG0280010776.01.T01;Parent=MsG0280010776.01;Name=MsG0280010776.01.T01;_AED=0.50;_eAED=0.50;_QI=66|1|1|1|1|1|2|160|140
Chr2 exon 74934446 74934743 74934446 ID=MsG0280010776.01.T01:exon:27666;Parent=MsG0280010776.01.T01
Chr2 exon 74936579 74936929 74936579 ID=MsG0280010776.01.T01:exon:27667;Parent=MsG0280010776.01.T01
Chr2 five_prime_UTR 74934446 74934511 74934446 ID=MsG0280010776.01.T01:five_prime_utr;Parent=MsG0280010776.01.T01
Chr2 CDS 74934512 74934743 74934512 ID=MsG0280010776.01.T01:cds;Parent=MsG0280010776.01.T01
Chr2 CDS 74936579 74936769 74936579 ID=MsG0280010776.01.T01:cds;Parent=MsG0280010776.01.T01
Chr2 three_prime_UTR 74936770 74936929 74936770 ID=MsG0280010776.01.T01:three_prime_utr;Parent=MsG0280010776.01.T01
Gene Sequence

>MsG0280010776.01.T01

ATGGCGACACAAACTGCAAAGCGAAAACCAGTGTTCGTGAAGGTCGATCAGCTGAAACCTGGAACCAATGGACACACTCTGACAGTGAAGGTGGTTAATTCTTCGCCGGTGAAGACGGTTCCTAACCGCGGTGGTCGATCGGCGGTGATTGCTTCTCGTCCTTCCCGCATTGCTGAATGTCTCATTGGTGATGAAACTGCTAGCATAATCTTCACTGCTCGCAATGAACAAGTGGACCTCATGAACCCTGGTGCAACTTTAATTCTGCGTAATGCTAAGATTGACATGTTCAAGGGATCTATGAGGTTGGCAGTTGATAGGTGGGGGCGTATAGAGGTCACAGAACCTGCAAATTTTGAAGTCAGGGAAGATAACAATCTCTCATTAGTTGAATATGAATTGGTCAATGTCGTTGAAGAGTAA

Protein sequence

>MsG0280010776.01.T01

MATQTAKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPVKTVPNRGGRSAVIASRPSRIAECLIGDETASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVREDNNLSLVEYELVNVVEE*