AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038571.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038571.01.T01 MTR_7g057180 78.328 323 25 4 7 287 56 375 6.90e-162 455
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038571.01.T01 AT4G13150 48.903 319 109 5 7 285 39 343 5.10e-91 274
MsG0780038571.01.T01 AT4G13150 47.012 251 90 3 7 225 39 278 2.19e-67 211
MsG0780038571.01.T01 AT4G13150 46.774 248 89 3 7 222 39 275 2.45e-66 209
MsG0780038571.01.T01 AT4G13150 43.668 229 86 3 7 203 39 256 1.03e-53 176
MsG0780038571.01.T01 AT4G13150 43.668 229 86 3 7 203 39 256 1.03e-53 176

Find 70 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGAGGCTTTAAATATT+TGG 0.131301 7:+48985976 MsG0780038571.01.T01:CDS
CAAAAGTATGGCAATCTTAT+TGG 0.194129 7:+48986919 MsG0780038571.01.T01:CDS
TCATTACCTATAACAGAAAT+TGG 0.225358 7:-48987774 None:intergenic
GAAAAGCTTCCCCAAGTAAA+AGG 0.226285 7:-48986324 None:intergenic
GATCTACTTCTGGTTGCTTA+TGG 0.241388 7:+48985929 MsG0780038571.01.T01:CDS
TATGGCAATCTTATTGGTTT+TGG 0.243971 7:+48986925 MsG0780038571.01.T01:CDS
CGACAACCAATTTCTGTTAT+AGG 0.251129 7:+48987768 MsG0780038571.01.T01:three_prime_UTR
CCTGCAGATGGATCTACTTC+TGG 0.300381 7:+48985919 MsG0780038571.01.T01:intron
ATTCGCCAACAGCCTATTCT+AGG 0.301647 7:+48985254 MsG0780038571.01.T01:CDS
TGAAGAGGCTTTAAATATTT+GGG 0.312257 7:+48985977 MsG0780038571.01.T01:CDS
CTTATTAACAATTCCCTTTG+TGG 0.336337 7:+48987873 MsG0780038571.01.T01:three_prime_UTR
CAAGACAGAGATCCCGTTCC+TGG 0.337367 7:+48985181 MsG0780038571.01.T01:CDS
GTGACTGATAAGATCGAAAA+AGG 0.339069 7:-48987746 None:intergenic
TGAACCCTAGCTCGTATATA+TGG 0.359915 7:-48987818 None:intergenic
TCACATTATTATTACCATTA+CGG 0.360639 7:-48987491 None:intergenic
TTCTGGTTGCTTATGGCTGC+AGG 0.373324 7:+48985936 MsG0780038571.01.T01:CDS
TTACGAGGCGTTAAAATCTA+AGG 0.373703 7:+48985100 MsG0780038571.01.T01:CDS
TCCTTACATATGTGATCAGC+TGG 0.380118 7:+48987414 MsG0780038571.01.T01:CDS
GCAGTTGCTCCTGTTGCTGC+TGG 0.381855 7:+48985323 MsG0780038571.01.T01:CDS
GTTGAAGCAGCCACAGCATA+TGG 0.393534 7:-48987599 None:intergenic
ACAGACGTTGTACAAAAGTA+TGG 0.398457 7:+48986907 MsG0780038571.01.T01:CDS
GCTATGATTGGAATTGCATT+AGG 0.402168 7:+48985203 MsG0780038571.01.T01:CDS
CTTCTGCTGATGTTACTTCA+AGG 0.413521 7:+48986360 MsG0780038571.01.T01:CDS
GCAGTTGAACGATTCTCTCT+TGG 0.419870 7:+48987073 MsG0780038571.01.T01:intron
ATATGTGATCAGCTGGGAAT+AGG 0.428888 7:+48987421 MsG0780038571.01.T01:CDS
ATCCCGTTCCTGGCTATGAT+TGG 0.436950 7:+48985191 MsG0780038571.01.T01:CDS
TTCCAATCATAGCCAGGAAC+GGG 0.459338 7:-48985193 None:intergenic
ATACTCTTACATGGCATTCA+AGG 0.460024 7:-48987663 None:intergenic
TTGCTTATGGCTGCAGGTTG+CGG 0.464815 7:+48985942 MsG0780038571.01.T01:CDS
AAAGTGAAACCAGCAGCAAC+AGG 0.472516 7:-48985332 None:intergenic
ATATCGGCCGTTCCCTCAAA+AGG 0.477162 7:-48987447 None:intergenic
CCCAGCTGATCACATATGTA+AGG 0.489000 7:-48987415 None:intergenic
AGAATTGAGGTGCAAACAAA+TGG 0.492047 7:+48985143 MsG0780038571.01.T01:CDS
ATTAGCCATATATACGAGCT+AGG 0.497151 7:+48987813 MsG0780038571.01.T01:three_prime_UTR
ATAATTCCGCAATGTGCACC+AGG 0.498074 7:+48985377 MsG0780038571.01.T01:CDS
CTTATCTGCATATACAACTT+AGG 0.502539 7:-48987700 None:intergenic
TGCTACTGTCGCAACCGTAA+TGG 0.508904 7:+48987477 MsG0780038571.01.T01:CDS
ATACATTCAAGTACCACAAA+GGG 0.512103 7:-48987886 None:intergenic
AAAAGCTTCCCCAAGTAAAA+GGG 0.514440 7:-48986323 None:intergenic
CCGGACGGTGATCCTAGAAT+AGG 0.524305 7:-48985266 None:intergenic
AACAGGAGCAACTGCTGAAG+AGG 0.528098 7:-48985315 None:intergenic
ACAGTAGCAAGAGCAAATAT+CGG 0.537808 7:-48987463 None:intergenic
ATGCTCTAAACATGAGGGTG+AGG 0.546750 7:+48985073 MsG0780038571.01.T01:CDS
ATGCAATTCCAATCATAGCC+AGG 0.548845 7:-48985199 None:intergenic
ATTCTGCTTCTGTAATGCAA+AGG 0.563407 7:-48985047 None:intergenic
TAGAATAGGCTGTTGGCGAA+TGG 0.565403 7:-48985252 None:intergenic
GCTCCTGCAAGAAAAGCTGT+AGG 0.567137 7:-48987106 None:intergenic
ATATTCTGAATACTCTTACA+TGG 0.569842 7:-48987672 None:intergenic
TTCTGCTGATGTTACTTCAA+GGG 0.570877 7:+48986361 MsG0780038571.01.T01:CDS
GTGCAAACAAATGGTAAAGA+GGG 0.571852 7:+48985152 MsG0780038571.01.T01:CDS
TGGTGTCAACAGTTAGGCAT+TGG 0.575572 7:+48986862 MsG0780038571.01.T01:intron
CCTTACATATGTGATCAGCT+GGG 0.576853 7:+48987415 MsG0780038571.01.T01:CDS
GGTGCAAACAAATGGTAAAG+AGG 0.578480 7:+48985151 MsG0780038571.01.T01:CDS
CTCCTGCAAGAAAAGCTGTA+GGG 0.587434 7:-48987105 None:intergenic
TTCTGACAGAATCTGTAGAC+CGG 0.587906 7:-48985285 None:intergenic
AATTAAATGCTCTAAACATG+AGG 0.593823 7:+48985067 MsG0780038571.01.T01:CDS
GTTAGGCATTGGTAAAGAGA+AGG 0.598947 7:+48986873 MsG0780038571.01.T01:intron
AATACATTCAAGTACCACAA+AGG 0.598968 7:-48987887 None:intergenic
ATTCCAATCATAGCCAGGAA+CGG 0.601656 7:-48985194 None:intergenic
ATTAAATGCTCTAAACATGA+GGG 0.602499 7:+48985068 MsG0780038571.01.T01:CDS
TTAGCCATATATACGAGCTA+GGG 0.605205 7:+48987814 MsG0780038571.01.T01:three_prime_UTR
GTGATCCTAGAATAGGCTGT+TGG 0.615355 7:-48985259 None:intergenic
CCTATTCTAGGATCACCGTC+CGG 0.623663 7:+48985266 MsG0780038571.01.T01:CDS
GACAGAATCTGTAGACCGGA+CGG 0.632980 7:-48985281 None:intergenic
AGATACACAAGATAGAATTG+AGG 0.647008 7:+48985130 MsG0780038571.01.T01:CDS
GGTCTACAGATTCTGTCAGA+AGG 0.648359 7:+48985287 MsG0780038571.01.T01:CDS
TAGGTAATGATCAACTACAA+TGG 0.650847 7:+48987787 MsG0780038571.01.T01:three_prime_UTR
GGGTACCCTGGTGCACATTG+CGG 0.665443 7:-48985383 None:intergenic
TAATTCCGCAATGTGCACCA+GGG 0.731402 7:+48985378 MsG0780038571.01.T01:CDS
TGAGGGTGAGGAAAATTACG+AGG 0.746935 7:+48985085 MsG0780038571.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTTAAAAACAA+AGG - Chr7:48986079-48986098 None:intergenic 10.0%
!! TAACTTTATCAAATATAAAA+GGG - Chr7:48987155-48987174 None:intergenic 10.0%
!!! ATTTTATTCACAAATATTTT+TGG + Chr7:48986839-48986858 MsG0780038571.01.T01:intron 10.0%
!!! TTGTTTTTAAGATATTTAAT+AGG + Chr7:48986079-48986098 MsG0780038571.01.T01:intron 10.0%
!! ATACTTATACATAAAGATAT+GGG - Chr7:48986988-48987007 None:intergenic 15.0%
!! CTAACTTTATCAAATATAAA+AGG - Chr7:48987156-48987175 None:intergenic 15.0%
!! TATACTTATACATAAAGATA+TGG - Chr7:48986989-48987008 None:intergenic 15.0%
!!! CTTTTATATTTGATAAAGTT+AGG + Chr7:48987154-48987173 MsG0780038571.01.T01:intron 15.0%
!!! TACCTTTTTTATTTTATACA+GGG + Chr7:48987560-48987579 MsG0780038571.01.T01:intron 15.0%
!!! TTACCTTTTTTATTTTATAC+AGG + Chr7:48987559-48987578 MsG0780038571.01.T01:intron 15.0%
!!! TTTTAAGATATTTAATAGGT+TGG + Chr7:48986083-48986102 MsG0780038571.01.T01:intron 15.0%
!! ACTTGAAGAAAAACAATTAA+AGG - Chr7:48987219-48987238 None:intergenic 20.0%
!! CTTATATAGAATAGAAAAAG+AGG + Chr7:48985684-48985703 MsG0780038571.01.T01:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG + Chr7:48987190-48987209 MsG0780038571.01.T01:intron 20.0%
!! TCACATTATTATTACCATTA+CGG - Chr7:48987494-48987513 None:intergenic 20.0%
!! TTATATTTGATAAAGTTAGG+TGG + Chr7:48987157-48987176 MsG0780038571.01.T01:intron 20.0%
!! TTATCTAATGACATAAACAA+GGG + Chr7:48986466-48986485 MsG0780038571.01.T01:intron 20.0%
!! TTCCCTGTATAAAATAAAAA+AGG - Chr7:48987565-48987584 None:intergenic 20.0%
!! TTTATCTAATGACATAAACA+AGG + Chr7:48986465-48986484 MsG0780038571.01.T01:intron 20.0%
!!! AGTTACATCAATTTTATTTG+TGG + Chr7:48985478-48985497 MsG0780038571.01.T01:intron 20.0%
!!! GTCATATTATTTTCATAACT+AGG - Chr7:48986676-48986695 None:intergenic 20.0%
!!! TTATTCACAAATATTTTTGG+TGG + Chr7:48986842-48986861 MsG0780038571.01.T01:intron 20.0%
!!! TTTAGTTCAGATTTATACAT+TGG + Chr7:48986422-48986441 MsG0780038571.01.T01:intron 20.0%
!!! TTTATTTTATACAGGGAATT+TGG + Chr7:48987567-48987586 MsG0780038571.01.T01:intron 20.0%
! ATATTCTGAATACTCTTACA+TGG - Chr7:48987675-48987694 None:intergenic 25.0%
! GCTTATTATATAAGTTCTCA+TGG - Chr7:48986733-48986752 None:intergenic 25.0%
! TATCTAATGACATAAACAAG+GGG + Chr7:48986467-48986486 MsG0780038571.01.T01:intron 25.0%
! TCATTACCTATAACAGAAAT+TGG - Chr7:48987777-48987796 None:intergenic 25.0%
!! AAAAACTACTGATTGTTTCA+GGG + Chr7:48986277-48986296 MsG0780038571.01.T01:intron 25.0%
!! AATTAAATGCTCTAAACATG+AGG + Chr7:48985067-48985086 MsG0780038571.01.T01:CDS 25.0%
!! ATTAAATGCTCTAAACATGA+GGG + Chr7:48985068-48985087 MsG0780038571.01.T01:CDS 25.0%
!! TTTTACTATTATAGCGACAA+AGG + Chr7:48985777-48985796 MsG0780038571.01.T01:intron 25.0%
!!! TGAAGAGGCTTTAAATATTT+GGG + Chr7:48985977-48985996 MsG0780038571.01.T01:CDS 25.0%
AAACAAGAAGCAAACACATA+AGG - Chr7:48986036-48986055 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG - Chr7:48987890-48987909 None:intergenic 30.0%
AATCTATCAATCACTAACCA+AGG - Chr7:48987131-48987150 None:intergenic 30.0%
AGATACACAAGATAGAATTG+AGG + Chr7:48985130-48985149 MsG0780038571.01.T01:CDS 30.0%
ATACATTCAAGTACCACAAA+GGG - Chr7:48987889-48987908 None:intergenic 30.0%
ATCTAATGACATAAACAAGG+GGG + Chr7:48986468-48986487 MsG0780038571.01.T01:intron 30.0%
CTTATCTGCATATACAACTT+AGG - Chr7:48987703-48987722 None:intergenic 30.0%
CTTATTAACAATTCCCTTTG+TGG + Chr7:48987873-48987892 MsG0780038571.01.T01:three_prime_UTR 30.0%
GAACTTATATAATAAGCGCT+TGG + Chr7:48986736-48986755 MsG0780038571.01.T01:intron 30.0%
GATCGAAAAAGGTCAATAAA+TGG - Chr7:48987738-48987757 None:intergenic 30.0%
GTTGTACATAATACTTCCTT+CGG + Chr7:48986387-48986406 MsG0780038571.01.T01:intron 30.0%
TAGGTAATGATCAACTACAA+TGG + Chr7:48987787-48987806 MsG0780038571.01.T01:three_prime_UTR 30.0%
TGTAAAAAATCAGCCTATTG+AGG + Chr7:48985805-48985824 MsG0780038571.01.T01:intron 30.0%
TTAAGCTGTTTATCCAAACA+CGG + Chr7:48986763-48986782 MsG0780038571.01.T01:intron 30.0%
TTACCAATAAACCCATAGAA+CGG - Chr7:48986198-48986217 None:intergenic 30.0%
TTATACATAAAGATATGGGC+AGG - Chr7:48986984-48987003 None:intergenic 30.0%
TTTGATAAAGTTAGGTGGAA+AGG + Chr7:48987162-48987181 MsG0780038571.01.T01:intron 30.0%
! AAAACTACTGATTGTTTCAG+GGG + Chr7:48986278-48986297 MsG0780038571.01.T01:intron 30.0%
! AATCTGAACTAAACTGATTC+AGG - Chr7:48986415-48986434 None:intergenic 30.0%
! CAAAAACTACTGATTGTTTC+AGG + Chr7:48986276-48986295 MsG0780038571.01.T01:intron 30.0%
! CAAAAGTATGGCAATCTTAT+TGG + Chr7:48986919-48986938 MsG0780038571.01.T01:CDS 30.0%
! CTTTATTCTTTTATGTCAGG+CGG + Chr7:48987624-48987643 MsG0780038571.01.T01:CDS 30.0%
! GGTTTCACTTTCAAAGTTTT+TGG + Chr7:48985344-48985363 MsG0780038571.01.T01:CDS 30.0%
! TGTCATTTGTTTCAACAGTT+TGG + Chr7:48985431-48985450 MsG0780038571.01.T01:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG + Chr7:48987221-48987240 MsG0780038571.01.T01:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG + Chr7:48987222-48987241 MsG0780038571.01.T01:intron 30.0%
!! CTGCTTTATTCTTTTATGTC+AGG + Chr7:48987621-48987640 MsG0780038571.01.T01:CDS 30.0%
!! GTGAAGAGGCTTTAAATATT+TGG + Chr7:48985976-48985995 MsG0780038571.01.T01:CDS 30.0%
!!! AAAGGTGTTTTCAATTCAAC+GGG - Chr7:48986061-48986080 None:intergenic 30.0%
!!! CAAAGGTGTTTTCAATTCAA+CGG - Chr7:48986062-48986081 None:intergenic 30.0%
!!! CTGTTTTGTTGTTAACTCAT+AGG + Chr7:48985752-48985771 MsG0780038571.01.T01:intron 30.0%
!!! TATGGCAATCTTATTGGTTT+TGG + Chr7:48986925-48986944 MsG0780038571.01.T01:CDS 30.0%
AAAAGCTTCCCCAAGTAAAA+GGG - Chr7:48986326-48986345 None:intergenic 35.0%
AAAGCAATAGAAGAGGAAGA+AGG - Chr7:48985408-48985427 None:intergenic 35.0%
AAGCAATAGAAGAGGAAGAA+GGG - Chr7:48985407-48985426 None:intergenic 35.0%
ACAGACGTTGTACAAAAGTA+TGG + Chr7:48986907-48986926 MsG0780038571.01.T01:CDS 35.0%
ACAGTAGCAAGAGCAAATAT+CGG - Chr7:48987466-48987485 None:intergenic 35.0%
ACATCATATCAACCGTTCTA+TGG + Chr7:48986183-48986202 MsG0780038571.01.T01:intron 35.0%
AGAATTGAGGTGCAAACAAA+TGG + Chr7:48985143-48985162 MsG0780038571.01.T01:CDS 35.0%
ATACTCTTACATGGCATTCA+AGG - Chr7:48987666-48987685 None:intergenic 35.0%
ATGCATGGATGAATTACAAG+TGG - Chr7:48985606-48985625 None:intergenic 35.0%
ATTAGCCATATATACGAGCT+AGG + Chr7:48987813-48987832 MsG0780038571.01.T01:three_prime_UTR 35.0%
ATTCTGCTTCTGTAATGCAA+AGG - Chr7:48985050-48985069 None:intergenic 35.0%
ATTGGAGATTGAATCCAACT+AGG + Chr7:48986440-48986459 MsG0780038571.01.T01:intron 35.0%
CATCATATCAACCGTTCTAT+GGG + Chr7:48986184-48986203 MsG0780038571.01.T01:intron 35.0%
CGACAACCAATTTCTGTTAT+AGG + Chr7:48987768-48987787 MsG0780038571.01.T01:three_prime_UTR 35.0%
GACAAAGAAAGCAATAGAAG+AGG - Chr7:48985415-48985434 None:intergenic 35.0%
GAGCTACTGCTTAATAGTTA+TGG + Chr7:48985503-48985522 MsG0780038571.01.T01:intron 35.0%
GCTATGATTGGAATTGCATT+AGG + Chr7:48985203-48985222 MsG0780038571.01.T01:CDS 35.0%
GTGACTGATAAGATCGAAAA+AGG - Chr7:48987749-48987768 None:intergenic 35.0%
GTGCAAACAAATGGTAAAGA+GGG + Chr7:48985152-48985171 MsG0780038571.01.T01:CDS 35.0%
TCATTAGATAAACCCCTAGT+TGG - Chr7:48986457-48986476 None:intergenic 35.0%
TCCATAAGCTCTCTCAAAAA+GGG - Chr7:48986648-48986667 None:intergenic 35.0%
TTAGCCATATATACGAGCTA+GGG + Chr7:48987814-48987833 MsG0780038571.01.T01:three_prime_UTR 35.0%
TTCCATAAGCTCTCTCAAAA+AGG - Chr7:48986649-48986668 None:intergenic 35.0%
TTGGAGATTGAATCCAACTA+GGG + Chr7:48986441-48986460 MsG0780038571.01.T01:intron 35.0%
TTTAAGCATTAGACCGTGTT+TGG - Chr7:48986779-48986798 None:intergenic 35.0%
! ACATGATACCCTTTTACTTG+GGG + Chr7:48986315-48986334 MsG0780038571.01.T01:CDS 35.0%
! AGAACGGTTGATATGATGTA+CGG - Chr7:48986182-48986201 None:intergenic 35.0%
! ATTCAGGTGAATTTGAAGCA+CGG + Chr7:48987303-48987322 MsG0780038571.01.T01:intron 35.0%
! CATTTGCTGAATCTTTCTCA+AGG + Chr7:48986150-48986169 MsG0780038571.01.T01:intron 35.0%
! GACAATTTTTCCATATGCTG+TGG + Chr7:48987589-48987608 MsG0780038571.01.T01:CDS 35.0%
! GACATGATACCCTTTTACTT+GGG + Chr7:48986314-48986333 MsG0780038571.01.T01:CDS 35.0%
! TGACATGATACCCTTTTACT+TGG + Chr7:48986313-48986332 MsG0780038571.01.T01:CDS 35.0%
! TTACGAGGCGTTAAAATCTA+AGG + Chr7:48985100-48985119 MsG0780038571.01.T01:CDS 35.0%
! TTCTGCTGATGTTACTTCAA+GGG + Chr7:48986361-48986380 MsG0780038571.01.T01:CDS 35.0%
! TTGTCATGCTACTTCAACTT+TGG - Chr7:48985658-48985677 None:intergenic 35.0%
AGCAATAGAAGAGGAAGAAG+GGG - Chr7:48985406-48985425 None:intergenic 40.0%
AGCCTCTTGCGTAAAAAACA+GGG + Chr7:48986539-48986558 MsG0780038571.01.T01:intron 40.0%
ATATGTGATCAGCTGGGAAT+AGG + Chr7:48987421-48987440 MsG0780038571.01.T01:CDS 40.0%
ATGCAATTCCAATCATAGCC+AGG - Chr7:48985202-48985221 None:intergenic 40.0%
ATTCCAATCATAGCCAGGAA+CGG - Chr7:48985197-48985216 None:intergenic 40.0%
CAACCGTTCTATGGGTTTAT+TGG + Chr7:48986192-48986211 MsG0780038571.01.T01:intron 40.0%
CCTTACATATGTGATCAGCT+GGG + Chr7:48987415-48987434 MsG0780038571.01.T01:CDS 40.0%
CGTACTATACACCAAATGGT+TGG + Chr7:48986570-48986589 MsG0780038571.01.T01:intron 40.0%
CTTTCAGTCACATGACAACA+AGG - Chr7:48986496-48986515 None:intergenic 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG - Chr7:48986327-48986346 None:intergenic 40.0%
GGTGCAAACAAATGGTAAAG+AGG + Chr7:48985151-48985170 MsG0780038571.01.T01:CDS 40.0%
GTCATGTGACTGAAAGGTTT+GGG + Chr7:48986500-48986519 MsG0780038571.01.T01:intron 40.0%
GTGCTTCAAATTCACCTGAA+TGG - Chr7:48987304-48987323 None:intergenic 40.0%
TCCTTACATATGTGATCAGC+TGG + Chr7:48987414-48987433 MsG0780038571.01.T01:CDS 40.0%
TCTGTTCACACTTTCCATTC+AGG + Chr7:48987287-48987306 MsG0780038571.01.T01:intron 40.0%
TGAACCCTAGCTCGTATATA+TGG - Chr7:48987821-48987840 None:intergenic 40.0%
TGAATTACAAGTGGCAGACA+TGG - Chr7:48985597-48985616 None:intergenic 40.0%
TGCTACCATAATGCCTCAAT+AGG - Chr7:48985821-48985840 None:intergenic 40.0%
TGGAGATTGAATCCAACTAG+GGG + Chr7:48986442-48986461 MsG0780038571.01.T01:intron 40.0%
TGTCATGTGACTGAAAGGTT+TGG + Chr7:48986499-48986518 MsG0780038571.01.T01:intron 40.0%
TTCTGACAGAATCTGTAGAC+CGG - Chr7:48985288-48985307 None:intergenic 40.0%
! AAAGGTTTGGGTTCAATTCC+TGG + Chr7:48986512-48986531 MsG0780038571.01.T01:intron 40.0%
! ATCAGCCTATTGAGGCATTA+TGG + Chr7:48985813-48985832 MsG0780038571.01.T01:intron 40.0%
! CTTCTGCTGATGTTACTTCA+AGG + Chr7:48986360-48986379 MsG0780038571.01.T01:CDS 40.0%
! CTTGTTGTCATGTGACTGAA+AGG + Chr7:48986494-48986513 MsG0780038571.01.T01:intron 40.0%
! GATCTACTTCTGGTTGCTTA+TGG + Chr7:48985929-48985948 MsG0780038571.01.T01:CDS 40.0%
! GGGAATAGGATTCCTTTTGA+GGG + Chr7:48987435-48987454 MsG0780038571.01.T01:CDS 40.0%
! TAAACTGATTCAGGTTCCGA+AGG - Chr7:48986406-48986425 None:intergenic 40.0%
! TGGGAATAGGATTCCTTTTG+AGG + Chr7:48987434-48987453 MsG0780038571.01.T01:CDS 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG + Chr7:48987262-48987281 MsG0780038571.01.T01:intron 40.0%
!! GTTAGGCATTGGTAAAGAGA+AGG + Chr7:48986873-48986892 MsG0780038571.01.T01:intron 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG + Chr7:48987440-48987459 MsG0780038571.01.T01:CDS 40.0%
!!! TTTTGGTGGTGTCAACAGTT+AGG + Chr7:48986856-48986875 MsG0780038571.01.T01:intron 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG + Chr7:48987261-48987280 MsG0780038571.01.T01:intron 40.0%
AAAGTGAAACCAGCAGCAAC+AGG - Chr7:48985335-48985354 None:intergenic 45.0%
AAGCTCTCTCAAAAAGGGCA+GGG - Chr7:48986643-48986662 None:intergenic 45.0%
ACCCCTGCAAAAAACAACTC+CGG - Chr7:48987255-48987274 None:intergenic 45.0%
ATAATTCCGCAATGTGCACC+AGG + Chr7:48985377-48985396 MsG0780038571.01.T01:CDS 45.0%
ATTCGCCAACAGCCTATTCT+AGG + Chr7:48985254-48985273 MsG0780038571.01.T01:CDS 45.0%
CAGAAGTAGATCCATCTGCA+GGG - Chr7:48985921-48985940 None:intergenic 45.0%
CAGCCTCTTGCGTAAAAAAC+AGG + Chr7:48986538-48986557 MsG0780038571.01.T01:intron 45.0%
CCCAGCTGATCACATATGTA+AGG - Chr7:48987418-48987437 None:intergenic 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG - Chr7:48987108-48987127 None:intergenic 45.0%
CTTGCGTAAAAAACAGGGCA+AGG + Chr7:48986544-48986563 MsG0780038571.01.T01:intron 45.0%
GCAGTTGAACGATTCTCTCT+TGG + Chr7:48987073-48987092 MsG0780038571.01.T01:intron 45.0%
GCTGCGTACTATACACCAAA+TGG + Chr7:48986566-48986585 MsG0780038571.01.T01:intron 45.0%
GGTCTACAGATTCTGTCAGA+AGG + Chr7:48985287-48985306 MsG0780038571.01.T01:CDS 45.0%
GTATCTGAATTCCCTGCAGA+TGG + Chr7:48985907-48985926 MsG0780038571.01.T01:intron 45.0%
GTGATCCTAGAATAGGCTGT+TGG - Chr7:48985262-48985281 None:intergenic 45.0%
TAAGCTCTCTCAAAAAGGGC+AGG - Chr7:48986644-48986663 None:intergenic 45.0%
TAATTCCGCAATGTGCACCA+GGG + Chr7:48985378-48985397 MsG0780038571.01.T01:CDS 45.0%
TAGAATAGGCTGTTGGCGAA+TGG - Chr7:48985255-48985274 None:intergenic 45.0%
TGAGGGTGAGGAAAATTACG+AGG + Chr7:48985085-48985104 MsG0780038571.01.T01:CDS 45.0%
TTCCAATCATAGCCAGGAAC+GGG - Chr7:48985196-48985215 None:intergenic 45.0%
! AACCCTACAGCTTTTCTTGC+AGG + Chr7:48987103-48987122 MsG0780038571.01.T01:CDS 45.0%
! AACTGCTAGTTCTCGATGCA+TGG - Chr7:48985621-48985640 None:intergenic 45.0%
! ATGCTCTAAACATGAGGGTG+AGG + Chr7:48985073-48985092 MsG0780038571.01.T01:CDS 45.0%
! CGGTCTTTTCATCAGTGAAG+AGG + Chr7:48985962-48985981 MsG0780038571.01.T01:CDS 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG + Chr7:48986335-48986354 MsG0780038571.01.T01:CDS 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG + Chr7:48987233-48987252 MsG0780038571.01.T01:intron 45.0%
! TGGTGTCAACAGTTAGGCAT+TGG + Chr7:48986862-48986881 MsG0780038571.01.T01:intron 45.0%
! TTTGGGTCTGTGCTTTTCAC+TGG + Chr7:48985994-48986013 MsG0780038571.01.T01:CDS 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG + Chr7:48987263-48987282 MsG0780038571.01.T01:intron 45.0%
!! AGGTTGGTACGTCAATAGCA+AGG + Chr7:48986099-48986118 MsG0780038571.01.T01:intron 45.0%
!! GCCCTTTTTGAGAGAGCTTA+TGG + Chr7:48986644-48986663 MsG0780038571.01.T01:intron 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG + Chr7:48987250-48987269 MsG0780038571.01.T01:intron 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG + Chr7:48987251-48987270 MsG0780038571.01.T01:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG + Chr7:48987249-48987268 MsG0780038571.01.T01:intron 45.0%
!!! TGCCCTGTTTTTTACGCAAG+AGG - Chr7:48986544-48986563 None:intergenic 45.0%
AACAGGAGCAACTGCTGAAG+AGG - Chr7:48985318-48985337 None:intergenic 50.0%
ATATCGGCCGTTCCCTCAAA+AGG - Chr7:48987450-48987469 None:intergenic 50.0%
ATCCCGTTCCTGGCTATGAT+TGG + Chr7:48985191-48985210 MsG0780038571.01.T01:CDS 50.0%
CCAGAAGTAGATCCATCTGC+AGG - Chr7:48985922-48985941 None:intergenic 50.0%
CCTGCAGATGGATCTACTTC+TGG + Chr7:48985919-48985938 MsG0780038571.01.T01:intron 50.0%
GACAGAATCTGTAGACCGGA+CGG - Chr7:48985284-48985303 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG - Chr7:48987109-48987128 None:intergenic 50.0%
GTTGAAGCAGCCACAGCATA+TGG - Chr7:48987602-48987621 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG + Chr7:48987477-48987496 MsG0780038571.01.T01:CDS 50.0%
TTCTGTCTCTCGACGGAACA+TGG + Chr7:48986123-48986142 MsG0780038571.01.T01:intron 50.0%
TTGCTTATGGCTGCAGGTTG+CGG + Chr7:48985942-48985961 MsG0780038571.01.T01:CDS 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG + Chr7:48987111-48987130 MsG0780038571.01.T01:CDS 50.0%
! TTACGCAAGAGGCTGTTTCC+AGG - Chr7:48986533-48986552 None:intergenic 50.0%
! TTCTGGTTGCTTATGGCTGC+AGG + Chr7:48985936-48985955 MsG0780038571.01.T01:CDS 50.0%
!! CCTATTCTAGGATCACCGTC+CGG + Chr7:48985266-48985285 MsG0780038571.01.T01:CDS 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG + Chr7:48987264-48987283 MsG0780038571.01.T01:intron 50.0%
ACAGAGCTACCGCATACGCA+GGG - Chr7:48986609-48986628 None:intergenic 55.0%
CAAATGGTTGGACGCCTTCC+CGG + Chr7:48986582-48986601 MsG0780038571.01.T01:intron 55.0%
CAAGACAGAGATCCCGTTCC+TGG + Chr7:48985181-48985200 MsG0780038571.01.T01:CDS 55.0%
CCGGACGGTGATCCTAGAAT+AGG - Chr7:48985269-48985288 None:intergenic 55.0%
GCAAGGCTTCTGTCTCTCGA+CGG + Chr7:48986116-48986135 MsG0780038571.01.T01:intron 55.0%
! TATGCGGTAGCTCTGTGGAC+CGG + Chr7:48986613-48986632 MsG0780038571.01.T01:intron 55.0%
!! AAGAGGAAGAAGGGGTACCC+TGG - Chr7:48985398-48985417 None:intergenic 55.0%
CACAGAGCTACCGCATACGC+AGG - Chr7:48986610-48986629 None:intergenic 60.0%
GCAGTTGCTCCTGTTGCTGC+TGG + Chr7:48985323-48985342 MsG0780038571.01.T01:CDS 60.0%
GGGTACCCTGGTGCACATTG+CGG - Chr7:48985386-48985405 None:intergenic 60.0%
TCAAAAAGGGCAGGGCAGCC+CGG - Chr7:48986635-48986654 None:intergenic 60.0%
! ATGCGGTAGCTCTGTGGACC+GGG + Chr7:48986614-48986633 MsG0780038571.01.T01:intron 60.0%
! CTGCGTATGCGGTAGCTCTG+TGG + Chr7:48986608-48986627 MsG0780038571.01.T01:intron 60.0%
!! CGGGAAGGCGTCCAACCATT+TGG - Chr7:48986584-48986603 None:intergenic 60.0%
CTACCGCATACGCAGGGTCC+GGG - Chr7:48986603-48986622 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + Chr7:48986597-48986616 MsG0780038571.01.T01:intron 65.0%
GCTACCGCATACGCAGGGTC+CGG - Chr7:48986604-48986623 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - Chr7:48986599-48986618 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 48985038 48987928 48985038 ID=MsG0780038571.01;Name=MsG0780038571.01
Chr7 mRNA 48985038 48987928 48985038 ID=MsG0780038571.01.T01;Parent=MsG0780038571.01;Name=MsG0780038571.01.T01;_AED=0.39;_eAED=0.43;_QI=0|0.66|0.57|1|0.83|0.85|7|267|287
Chr7 exon 48985038 48985399 48985038 ID=MsG0780038571.01.T01:exon:6533;Parent=MsG0780038571.01.T01
Chr7 exon 48985926 48986015 48985926 ID=MsG0780038571.01.T01:exon:6534;Parent=MsG0780038571.01.T01
Chr7 exon 48986298 48986382 48986298 ID=MsG0780038571.01.T01:exon:6535;Parent=MsG0780038571.01.T01
Chr7 exon 48986874 48986946 48986874 ID=MsG0780038571.01.T01:exon:6536;Parent=MsG0780038571.01.T01
Chr7 exon 48987077 48987132 48987077 ID=MsG0780038571.01.T01:exon:6537;Parent=MsG0780038571.01.T01
Chr7 exon 48987382 48987498 48987382 ID=MsG0780038571.01.T01:exon:6538;Parent=MsG0780038571.01.T01
Chr7 exon 48987581 48987928 48987581 ID=MsG0780038571.01.T01:exon:6539;Parent=MsG0780038571.01.T01
Chr7 CDS 48985038 48985399 48985038 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48985926 48986015 48985926 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48986298 48986382 48986298 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48986874 48986946 48986874 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48987077 48987132 48987077 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48987382 48987498 48987382 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 CDS 48987581 48987661 48987581 ID=MsG0780038571.01.T01:cds;Parent=MsG0780038571.01.T01
Chr7 three_prime_UTR 48987662 48987928 48987662 ID=MsG0780038571.01.T01:three_prime_utr;Parent=MsG0780038571.01.T01
Gene Sequence

>MsG0780038571.01.T01

ATGAAGTCACCTTTGCATTACAGAAGCAGAATTAAATGCTCTAAACATGAGGGTGAGGAAAATTACGAGGCGTTAAAATCTAAGGATATATTAGATACACAAGATAGAATTGAGGTGCAAACAAATGGTAAAGAGGGACATAACAAGACAGAGATCCCGTTCCTGGCTATGATTGGAATTGCATTAGGCATAGCTGCATTAGCTACAATAGCATCCATTCGCCAACAGCCTATTCTAGGATCACCGTCCGGTCTACAGATTCTGTCAGAAGGTTCTTCCTCTTCAGCAGTTGCTCCTGTTGCTGCTGGTTTCACTTTCAAAGTTTTTGGATTCAGCGTTATAATTCCGCAATGTGCACCAGGATGGATCTACTTCTGGTTGCTTATGGCTGCAGGTTGCGGTCTTTTCATCAGTGAAGAGGCTTTAAATATTTGGGTCTGTGCTTTTCACTGGGGAGTTTGCATTAGTGACATGATACCCTTTTACTTGGGGAAGCTTTTCAGAAAGTCTGGTGCTTCTGCTGATGTTACTTCAAGGTTAGGCATTGGTAAAGAGAAGGCTACAGAAATCACAGACGTTGTACAAAAGTATGGCAATCTTATTGGTTTTGTTGAACGATTCTCTCTTGGAGTGAGAAACCCTACAGCTTTTCTTGCAGGAGCCTTGAAAGTTTCTAATGTGATGACTAACATAAATTTTCCTTACATATGTGATCAGCTGGGAATAGGATTCCTTTTGAGGGAACGGCCGATATTTGCTCTTGCTACTGTCGCAACCGTAATGGGAATTTGGACAATTTTTCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTATGTCAGGCGGAAGTACTTATCTTAG

Protein sequence

>MsG0780038571.01.T01

MKSPLHYRSRIKCSKHEGEENYEALKSKDILDTQDRIEVQTNGKEGHNKTEIPFLAMIGIALGIAALATIASIRQQPILGSPSGLQILSEGSSSSAVAPVAAGFTFKVFGFSVIIPQCAPGWIYFWLLMAAGCGLFISEEALNIWVCAFHWGVCISDMIPFYLGKLFRKSGASADVTSRLGIGKEKATEITDVVQKYGNLIGFVERFSLGVRNPTAFLAGALKVSNVMTNINFPYICDQLGIGFLLRERPIFALATVATVMGIWTIFPYAVAASTALFFYVRRKYLS*